NA ----> NA
Intron 1 GTGGGCGTGG ... TTCTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.27 | 9 | 26 | 11 |
| A2 | 56.25 | 7 | 11 | 7 |
| A3 | 65.52 | 5 | 12 | 7 |
| A4 | 57.89 | 4 | 4 | 7 |
| A5 | 83.33 | 1 | 4 | 6 |
| A6 | 58.82 | 7 | 5 | 15 |
| A7 | 46.22 | 32 | 26 | 29 |
| A8 | 61.29 | 12 | 14 | 24 |
| A9 | 46.67 | 20 | 17 | 18 |
| A10 | 47.17 | 14 | 9 | 16 |
>TRINITY_DN116715_c0_g1_i8 from sample A1 / Example spliced isoformTGAAATACCACAATGCACGGAAAGAAAGAAAAACAAACACGAAGAAGAGGAAGAGAGCAGCAAATTTCCCGAGACCTCTGACTGCCAAATTTTCCTCCGATTTATCATTTTTCTCCTCGCCGACCCCCGGCTTAGCAAGCCTTCCAGGACTGCCTCGGAGCTTCTCCCCGCCAAATTTCGAGGCGAGACGGGCCCATTTC
CCCTGAAACCATAAACCATGGACGAAGAGGGAAAAGAACGCCGGGAAGAAGATGCAACACCGCTTTCGGGTGGATTCGTAACGGAAAGCCGTGGTAGGAATCGGGCCGAGAATGGAGCGGTTCCGTCAGGCACACCGTTGGATTCCGTTCCATCAATTCCTGCCAAGGAGCCCAATTCCCGTGCCGACTGGAGAATCCCT
TTGGAACAAGTTGAGGCCATTCTCCAGCCATCTCTCAGTGCAGCAGAAACAAAAGTGACATTGGTGATGCGGCAGTTTGTTGAATCTATTGAGTCACAAATTTTATCAGCCCTTAAGCAGGCAGCAATGGATATCATTGAGCACTTAGGGAAAGAGGCTGCAATGAGGGTATTGGTTGCAGAGAGAAAGGCTGCATTTTT
TGAACAGGAATTGATTAATACCAAGCAAGAGGCATTAGCTATGCTTCTGCGGTTGAAAAACAGCATGGATTCTCAGATTGTTGAAGCAGAAAGGGCTTGTCTCATTGAAAGGAGACGGACACAAGAAATGGAATCCAAATTAGTGACATCACAAGATACAGTGAAAAAGTTGAAGGCTGAGTTGAAAAGAAAGGGAGAAG
TACTGGAGAAGATGCAAAACGTGGCATGCCCATTGGATGATAATTGTCTCGATCTAATGCGTTCTCACTCGGAATATTCAACAATTCAAGTAACATCTTCAGCGAAGCAATCACCTGAGAACATGCTTACTGGAAAATGTAGTTTGCCATCTATAATCATGAAGTGTAAAGAACAGCAGATACCTGCGAATGGATATAAG
CAGGGAAGATATAGAGAAACTGCAAATGAATCAACTGCAGATGTGTTGCCTTTATCAGAAGGAAACGAGAACAAAGAGTGCATGTCTACTGAGAATGATCTATTGCCGCAGTCAGTTGAGGAAAGACAGATTGGAAGCACTGTCTGTTTTAAAGGCCAAACAGATATACCTGTAACTACTGCTGCAAGTTTAACACAGGA
ATACCACACACATGCAAGACCGCAGCATGTTTCTATTACAATGGCATATCCTTGTGCCAAGTTTGAAAATACCAATGTAAATGTTGATTTTCAAGACATAAATTCTTTGCAGAAACAAAATGCTGGATGTTTTCTTTCTCAAAGCACAATCTTTGTAACTTCTACAGGGAAAAGTCGTATGCTTGATGGAGGTTCAGTCC
ATTTGGATAGAAAAACATCTCCAACTTCAGAGTCTGATGCTTCCCTAGGTGTTGAAAGCAAATTAGCTATGACTGATACAGGTGTAGTAGCAGTTAGAAATGCACAAAAGCAAAAAGATTCTGTTTCTCGTCCAGATGTATATACTGCAGCATTTCTTCCACAAGATGGAGAAGCAAGTGCACGGGACGCTGAATCTTCT
CAGACTGCTGGTGGAGATGAGAAAGCTGCGTCTTCTACTAGGGAGAGTCTAGGCATGAAAATTGAAAACAGAGATGCAAATAGTTGTGGACTGGACATCAATAAGCATGTTGAAGAGAAGGGGAATCCAGAAGTTGATTTCAGTCTCTCTAGCAAGCTTCTAGTTAGGGATGGTGTAAGTTTACAGTCTACACTATGTAG
CTCACCTGTGAAATTATCTCAAGAAAATAAAGGCATATCCTTGGAGAATACAGATAATCGGAATGATGGTGAAGGTGGAGTTCTGACAGGGACAGTTCAAACTGATGGCAATAAAGCAAGGTTGTCAGTAGGTCCAGATCTTACTGAACAAGAATGTGAGGGAGCAATTTTAGCCAGCCTGCCTTCTGCGACAGAGGGTT
TAAAAAACAATCATGGTGAGATGACAGATATTGATGTGGCCCAGGGTCCAGCAACCAATGTGAAAGCTTCTGAGCAACAGGCACACAGCAGACTTACTAGGTTTACATTTCAAAGGAAGCGTAGAAGGGAAGGTCCATTTCAGCAGAATGGTAATTTGGTTCAGGAAGAAAAGGACCCTAAAAAGGTGGAAACTAAACAA
CATGAACATTTTCCTAGTTGTCTGTCTGGTAAATCACCTCAGAAACACAGAATGGTTTCATTGGCATCGCAGAAGTCTAGCTTGGTTGCTGAGTCTTCTCGAGACAGCAGGCGGTTAATGCAAGGCGCTCGTCAGCTTATCTCATTGTCAGAAAAGAAGTCATGGTGATGATATGATTAGACAGTTCCTCCAATAAGAAT
GCGAAGAAAGGAAATGACTTTGCAACTGCTAAAATTTATCTTAGTATTTCTATTGATACTGCAATAATTCTGTCGTTTTGGGAAGGGCAAGCGAGAGTCATGCATCAGACCATGAATGTTCACAGCAAGTCTAGTTTGATTCTCAAGAGTATACCCCTATCCAGAATGAAATTCACGTAATGGATGTGAATCAGTGGTTT
CTGTTTTTCTTGAAAGCTCCTGTCAGGTTGTTCAAGTAGGTTGCGCTGGACAAAAAATTGTCTATGGGTAAGCCTCTTGTATATTTGTAATTATTCAATAATTTGATCCAGTTTATGTTCCGGATCCTTACTTTTCAAACTCAAGAGGTTGAATAATACTATGGAAGTCATGTTTTCAGGGTGAATGGAAGTTTCAGGGA
AAATTACCCATTCATCTGGGCATTGAACAATCCAATTAGTACTAAAAAATTAAAGGCGTATTCACTTGCAGTATTATGTCAGTGATAAGTGCTTGCAGTATCACATCGATGATAACAAAGTGTCAGATAAATCTTATGCACGGAACTGCTTTCTGAAGCAATCTAATGTAACAATGAGGTTTATTCTTCTTTCCTTGTAA
ATGGAATTGAATTGGTAAATATAGAGGAGTCG
>TRINITY_DN116715_c0_g1_i3 from sample A1 / Example unspliced isoform:CCTTATACTAGCTTGCCGCTCAGTATTTTCCAACTAGAAAGTAAAGCTGAACCGTCTGGTATTAATCTTCCTTTTTTTTCATTGTATAATCTATATATGATTTGCTGTTTTGCACTAAGTATTCTTCTACGATAAAGCCAGTTTGAAATGATACGTATATTCTCCCTTCAGATTATTGAAGCAGAAAGGGCTTGTCTGAT
TGAAAGGAGACGGACACAAGAAATGGAATCCAAATTAGTGACATCACAAGATACAGTGAAAAAGTTGAAGGCTGAGTTGAAAAGAAAGGGAGAAGTACTGGAGAAGATGCAAAACGTGGCATGCCCATTGGATGATAATTGTCTCGATCTAATGCGTTCTCACTCGGAATATTCAACAATTCAAGTAACATCTTCAGCGA
AGCAATCACCTGAGAACATGCTTACTGGAAAATGTAGTTTGCCATCTATAATCATGAAGTGTAAAGAACAGCAGATACCTGCGAATGGATATAAGCAGGGAAGATATAGAGAAACTGCAAATGAATCAACTGCAGATGTGTTGCCTTTATCAGAAGGAAACGAGAACAAAGAGTGCATGTCTACTGAGAATGATCTATTG
CCGCAGTCAGTTGAGGAAAGACAGATTGGAAGCACTGTCTGTTTTAAAGGCCAAACAGATATACCTGTAACTACTGCTGCAAGTTTAACACAGGAATACCACACACATGCAAGACCGCAGCATGTTTCTATTACAATGGCATATCCTTGTGCCAAGTTTGAAAATACCAATGTAAATGTTGATTTTCAAGACATAAATTC
TTTGCAGAAACAAAATGCTGGATGTTTTCTTTCTCAAAGCACAATCTTTGTAACTTCTACAGGGAAAAGTCGTATGCTTGATGGAGGTTCAGTCCATTTGGATAGAAAAACATCTCCAACTTCAGAGTCTGATGCTTCCCTAGGTGTTGAAAGCAAATTAGCTATGACTGATACAGGTGTAGTAGCAGTTAGAAATGCAC
AAAAGCAAAAAGATTCTGTTTCTCGTCCAGATGTATATACTGCAGCATTTCTTCCACAAGATGGAGAAGCAAGTGCACGGGACGCTGAATCTTCTCAGACTGCTGGTGGAGATGAGAAAGCTGCGTCTTCTACTAGGGAGAGTCTAGGCATGAAAATTGAAAACAGAGATGCAAATAGTTGTGGACTGGACATCAATAAG
CATGTTGAAGAGAAGGGGAATCCAGAAGTTGATTTCAGTCTCTCTAGCAAGCTTCTAGTTAGGGATGGTGTAAGTTTACAGTCTACACTATGTAGCTCACCTGTGAAATTATCTCAAGAAAATAAAGGCATATCCTTGGAGAATACAGATAATCGGAATGATGGTGAAGGTGGAGTTCTGACAGGGACAGTTCAAACTGA
TGGCAATAAAGCAAGGTTGTCAGTAGGTCCAGATCTTACTGAACAAGAATGTGAGGGAGCAATTTTAGCCAGCCTGCCTTCTGCGACAGAGGGTTTAAAAAACAATCATGGTGAGATGACAGATATTGATGTGGCCCAGGGTCCAGCAACCAATGTGAAAGCTTCTGAGCAACAGGCACACAGCAGACTTACTAGGTTTA
CATTTCAAAGGAAGCGTAGAAGGGAAGGTCCATTTCAGCAGAATGGTAATTTGGTTCAGGAAGAAAAGGACCCTAAAAAGGTGGAAACTAAACAACATGAACATTTTCCTAGTTGTCTGTCTGGTAAATCACCTCAGAAACACAGAATGGTTTCATTGGCATCGCAGAAGTCTAGCTTGGTTGCTGAGTCTTCTCGAGAC
AGCAGGCGGTTAATGCAAGGCGCTCGTCAGCTTATCTCATTGTCAGAAAAGAAGTCATGGTGATGATATGATTAGACAGTTCCTCCAATAAGAATGCGAAGAAAGGAAATGACTTTGCAACTGCTAAAATTTATCTTAGTATTTCTATTGATACTGCAATAATTCTGTCGTTTTGGGAAGGGCAAGCGAGgtgggcgtgg
atcaaaataatgcatttctttccatgttttatgactacagcctagtgcatgtactcattatctttccttcttaacagAGTCATGCATCAGACCATGAATGTTCACAGCAAGTCTAGTTTGATTCTCAAGAGTATACCCCTATCCAGAATGAAATTCACGTAATGGATGTGAATCAGTGGTTTCTGTTTTTCTTGAAAGCT
CCTGTCAGGTTGTTCAAGTAGGTTGCGCTGGACAAAAAATTGTCTATGGGTAAGCCTCTTGTATATTTGTAATTATTCAATAATTTGATCCAGTTTATGTTCCGGATCCTTACTTTTCAAACTCAAGAGGTTGAATAATACTATGGAAGTCATGTTTTCAGGGTGAATGGAAGTTTCAGGGAAAATTACCCATTCATCTG
GGCATTGAACAATCCAATTAGTACTAAAAAATTAAAGGCGTATTCACTTGCAGTATTATGTCAGTGATAAGTGCTTGCAGTATCACATCGATGATAACAAAGTGTCAGATAAATCTTATGCACGGAACTGCTTTCTGAAGCAATCTAATGTAACAATGAGGTTTATTCTTCTTTCCTTGTAAATGGAATTGAATTGGTAA
ATATAGAGGAGTCG
Intron 2 GTAAGCCTCT ... ATGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.33 | 2 | 15 | 5 |
| A2 | 55.56 | 2 | 4 | 1 |
| A3 | 71.43 | 2 | 8 | 2 |
| A4 | 60 | 4 | 7 | 5 |
| A5 | 50 | 2 | 3 | 1 |
| A6 | 73.91 | 3 | 6 | 11 |
| A7 | 50 | 11 | 14 | 8 |
| A8 | 53.85 | 9 | 6 | 15 |
| A9 | 55.22 | 15 | 22 | 15 |
| A10 | 51.35 | 9 | 14 | 5 |
>TRINITY_DN39236_c0_g1_i2 from sample A6 / Example spliced isoformTTTTCAAGACATAAATTCTTTGCAGAAACAAAATGCTGGATGTTTTCTTTCTCAAAGCACAATCTTTGTAACTTCTACAGGGAAAAGTCGTATGCTTGATGGAGGTTCAGTCCATTTGGATAGAAAAACATCTCCAACTTCAGAGTCTGATGCTTCCCTAGGTGTTGAAAGCAAATTAGCTATGACTGATACAGGTGTAG
TAGCAGTTAGAAATGCACAAAAGCAAAAAGATTCTGTTTCTCGTCCAGATGTATATACTGCAGCATTTCTTCCACAAGATGGAGAAGCAAGTGCACGGGACGCTGAATCTTCTCAGACTGCTGGTGGAGATGAGAAAGCTGCGTCTTCTACTAGGGAGAGTCTAGGCATGAAAATTGAAAACAGAGATGCAAATAGTTGT
GGACTGGACATCAATAAGCATGTTGAAGAGAAGGGGAATCCAGAAGTTGATTTCAGTCTCTCTAGCAAGCTTCTAGTTAGGGATGGTGTAAGTTTACAGTCTACACTATGTAGCTCACCTGTGAAATTATCTCAAGAAAATAAAGGCATATCCTTGGAGAATACAGATAATCGGAATGATGGTGAAGGTGGAGTTCTGAC
AGGGACAGTTCAAACTGATGGCAATAAAGCAAGGTTGTCAGTAGGTCCAGATCTTACTGAACAAGAATGTGAGGGAGCAATTTTAGCCAGCCTGCCTTCTGCGACAGAGGGTTTAAAAAACAATCATGGTGAGATGACAGATATTGATGTGGCCCAGGGTCCAGCAACCAATGTGAAGGCTTCTGAGCAACAGGCACACA
GCAGACTTACTAGGTTTACATTTCAAAGGAAGCGTAGAAGGGAAGGTCCATTTCAGCAGAATGGTAATTTGGTTCAGGAAGAAAAGGACCCTAAAAAGGTGGAAACTAAACAACATGAACATTTTCCTAGTTGTCTGTCTGGTAAATCACCTCAGAAACACAGAATGGTTTCATTGGCATCGCAGAAGTCTAGCTTGGTT
GCTGAGTCTTCTCGAGACAGCAGGCGGTTAATGCAAGGCGCTCGTCAGCTTATCTCATTGTCAGAAAAGAAGTCATGGTGATGATATGATTAGACAGTTCCTCCAATAAGAATGCGAAGAAAGGAAATGACTTTGCAACTGCTAAAATTTATCTTAGTATTTCTATTGATACTGCAATAATTCTGTCGTTTTGGGAAGGG
CAAGCGAGGTGGGCGTGGATCAAAATAATGCATTTCTTTCCATGTTTTATGACTACAGCCTAGTGCATGTACTCATTATCTTTCCTTCTTAACAGAGTCATGCATCAGACCATGAATGTTCACAGCAAGTCTAGTTTGATTCTCAAGAGTATACCCCTATCCAGAATGAAATTCACGTAATGGATGTGAATCAGTGGTTT
CTGTTTTTCTTGAAAGCTCCTGTCAGGTTGTTCAAGTAGGTTGCGCTGGACAAAAAATTGTCTATGGGGTGAATGGAAGTTTCAGGGAAAATTACCCATTCATCTGGGCATTGAACAATCCAATTAGTACTAAAAAATTAAAGGCGTATTCACTTGCAGTATTACGTCAGTGATAAGTGCTTGCAGTATCACATCGATGA
TAACAAAGTGTCAGATAAATCTTATGCACGGAACTGCTTTCTGAAGCAATCTAATGTAACAATGAGGTTTATTCTTCTTTCCTTGTAAATGGAATTGAATTGGTAAATATAGAGGAGTCAGGATAATGGTTTATGAGGTTCCATCCATTAGAAGATGAGAGTAATCTTGGATAAGCTACCTAGGTGTGTCTAGTTGAAGG
TAGCATTTTTAGAATATTTGGAATGCACTCTAGTTCATTTTCTAAGAATGCAACTGCACTCCAGAAAATGAATAGGGTAAAAGGCAAACAGACTCAGATTATCTCTCAGTGTTTTCAAAGTCTCTGCTCCGTCTTACTTTGCTACCTGTATACAACATTTGGGCCAATTGATTGTTCCTTTGTGAAATCAGCCCAGCTTC
ATCCTTTAG
>TRINITY_DN39236_c0_g1_i1 from sample A6 / Example unspliced isoform:TTTTCAAGACATAAATTCTTTGCAGAAACAAAATGCTGGATGTTTTCTTTCTCAAAGCACAATCTTTGTAACTTCTACAGGGAAAAGTCGTATGCTTGATGGAGGTTCAGTCCATTTGGATAGAAAAACATCTCCAACTTCAGAGTCTGATGCTTCCCTAGGTGTTGAAAGCAAATTAGCTATGACTGATACAGGTGTAG
TAGCAGTTAGAAATGCACAAAAGCAAAAAGATTCTGTTTCTCGTCCAGATGTATATACTGCAGCATTTCTTCCACAAGATGGAGAAGCAAGTGCACGGGACGCTGAATCTTCTCAGACTGCTGGTGGAGATGAGAAAGCTGCGTCTTCTACTAGGGAGAGTCTAGGCATGAAAATTGAAAACAGAGATGCAAATAGTTGT
GGACTGGACATCAATAAGCATGTTGAAGAGAAGGGGAATCCAGAAGTTGATTTCAGTCTCTCTAGCAAGCTTCTAGTTAGGGATGGTGTAAGTTTACAGTCTACACTATGTAGCTCACCTGTGAAATTATCTCAAGAAAATAAAGGCATATCCTTGGAGAATACAGATAATCGGAATGATGGTGAAGGTGGAGTTCTGAC
AGGGACAGTTCAAACTGATGGCAATAAAGCAAGGTTGTCAGTAGGTCCAGATCTTACTGAACAAGAATGTGAGGGAGCAATTTTAGCCAGCCTGCCTTCTGCGACAGAGGGTTTAAAAAACAATCATGGTGAGATGACAGATATTGATGTGGCCCAGGGTCCAGCAACCAATGTGAAGGCTTCTGAGCAACAGGCACACA
GCAGACTTACTAGGTTTACATTTCAAAGGAAGCGTAGAAGGGAAGGTCCATTTCAGCAGAATGGTAATTTGGTTCAGGAAGAAAAGGACCCTAAAAAGGTGGAAACTAAACAACATGAACATTTTCCTAGTTGTCTGTCTGGTAAATCACCTCAGAAACACAGAATGGTTTCATTGGCATCGCAGAAGTCTAGCTTGGTT
GCTGAGTCTTCTCGAGACAGCAGGCGGTTAATGCAAGGCGCTCGTCAGCTTATCTCATTGTCAGAAAAGAAGTCATGGTGATGATATGATTAGACAGTTCCTCCAATAAGAATGCGAAGAAAGGAAATGACTTTGCAACTGCTAAAATTTATCTTAGTATTTCTATTGATACTGCAATAATTCTGTCGTTTTGGGAAGGG
CAAGCGAGAGTCATGCATCAGACCATGAATGTTCACAGCAAGTCTAGTTTGATTCTCAAGAGTATACCCCTATCCAGAATGAAATTCACGTAATGGATGTGAATCAGTGGTTTCTGTTTTTCTTGAAAGCTCCTGTCAGGTTGTTCAAGTAGGTTGCGCTGGACAAAAAATTGTCTATGGgtaagcctcttgtatatttg
taattattcaataatttgatccagtttatgttccggatccttacttttcaaactcaagaggttgaataatactatggaagtcatgttttcagGGTGAATGGAAGTTTCAGGGAAAATTACCCATTCATCTGGGCATTGAACAATCCAATTAGTACTAAAAAATTAAAGGCGTATTCACTTGCAGTATTACGTCAGTGATA
AGTGCTTGCAGTATCACATCGATGATAACAAAGTGTCAGATAAATCTTATGCACGGAACTGCTTTCTGAAGCAATCTAATGTAACAATGAGGTTTATTCTTCTTTCCTTGTAAATGGAATTGAATTGGTAAATATAGAGGAGTCAGGATAATGGTTTATGAGGTTCCATCCATTAGAAGATGAGAGTAATCTTGGATAAG
CTACCTAGGTGTGTCTAGTTGAAGGTAGCATTTTTAGAATATTTGGAATGCACTCTAGTTCATTTTCTAAGAATGCAACTGCACTCCAGAAAATGAATAGGGTAAAAGGCAAACAGACTCAGATTATCTCTCAGTGTTTTCAAAGTCTCTGCTCCGTCTTACTTTGCTACCTGTATACAACATTTGGGCCAATTGATTGT
TCCTTTGTGAAATCAGCCCAGCTTCATCCTTTAG