sp|Q8GYP6|PPR49_ARATH ----> Pentatricopeptide repeat-containing protein At1g18900
Intron 1 GTTGTTGCTT ... CTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.38 | 10 | 11 | 1.3 |
| A2 | 58.3 | 6.5 | 9 | 0.5 |
| A3 | 59.85 | 3.1 | 2 | 3.1 |
| A4 | 46.59 | 3.5 | 3 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 74.35 | 14.5 | 42 | 1.9 |
| A7 | 71.98 | 11 | 28 | 5.9 |
| A8 | 67.66 | 16.9 | 35 | 3.5 |
| A9 | 71.81 | 11.8 | 30 | 0 |
| A10 | 40.68 | 9.1 | 6 | 4.5 |
>TRINITY_DN117328_c2_g1_i3 from sample A1 / Example spliced isoformACCCTTTTCAACAACTTGACATATTTCTCTTCTAGCATCCTTCAGTTAACTCCGCGATTGGTAAAAATGGTATTGGATAAAACATCCTCCCTAAGTTCGGTTCTGAGGTTTCTTCAATGGGCCAAAACGCAACCAAGGTTTGAAGATGACAGCTCAACTTATGACAAAACTGCCGAAGCCCCAGAAATAAAGGAATGGAA
ACTGAAGGATGCTAGAAGAGAAATATGTCAAGTTGTTGAAAAGGGCCATGAAGACATGGAAGCAACCCTAACTAAATTGGGTGTTCGGGTAACTCCACAACTAGTAAATCAAGTATTTGTTGAAATAAATTCCCGTAGTTCGGCTCTTAGGTTTTTCCAATGGGTCAAATTACAACCAGGGTTCAAACACTTCACTTCAA
TTTATGACTGTCTTACCAATATTCTCGGCCGCTCTAAGGACTTTGAAGCTCTGCAGAGGGTTTTGTCGGAGAGATTAGCTGTGTCTTGTAATTATTCTGCCAAAACATTTTCTTTCGCTACTGCCTGGCATAATGATCCGGATATGCTGAATGAATTTATGGAAATGTTTGAGAAGCTGAAGCTTCGTGTCAGAAGATTT
GCTTATGAAATGCTTATTGTAGCTCTCTGTAAAGAAAATCACATCAATGCAGCCATAGTTGCATTGGAAAAGATGGCAAGATCTGGTTGTGCTCCGAGCATGCAGACTTATCGTCCACTTATACAGGTGTACTGTCAGAACAACCAGATGGATAAGGTCCACGAGATTTTTGAGAGGATGAAAGACTGTCCTCGAGATTA
CACCTGCTATAGCATGATTTTAAGTGCACTTTGTAATAGGAAACGATTTGCAGAGTCAGTCGAATTTCTTCGGAGAATGGTTAATATGGGCTACAAACCAGATGCATATACATATAATATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTA
CGCCTTTGAATTTTACTTGAGGCATATTCCTGATGTACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGAATGGATCGCAAAATGGATTCGAGTAACTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGGTGCATGCAATCTTATGATGGAAATGAAAGCTAAG
GGATTTGCTTGATGCTTTGAATGTCAAAAAACCCCTTGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGAGGGAAGGAGGAGCTATTCCACGAGGTCAAAGGTGTTTGTGTCAATTTGCTGGATTTACATCTAAAAGATCTGGAGAGTAGTAAGATGCATCTGGTAAGATTTTCACTA
ACTAGGTGCAGGGAAC
>TRINITY_DN117328_c2_g1_i1 from sample A1 / Example unspliced isoform:GCATCGATTTCTCTTTGAAGCCAAGGGGGAAAATCGTCAACCGGCAAATTCAGACAATGGCTTGTGTGCGTCGTGCAGGACTGGACCTTGTCAAGGTAGCATTTTCAAAAACCCAGCTGCGCCCTTTGCAATGGAGTTCTGCACCAGAAAAATGGTACCAAAATCTGGACTTGACGCCCCTCAAAACTTTCCAAAACGGT
AAGAACTGTTTTCGTGATTATGAATTCCTTTTGAGCCATAAATTTTATGTAACGGATTCATTCGAGAGCGAGGACAAAGAAGAGGAAGACACCTTGCCCGAATTGGGCAAAATTGACGAAACCCCAGAAAAAAAGAAATGGGATCTGGTGGATGCTGCAAGACAAATGTGTCAAATCATTGAAAAGGGGGATGGAGACAC
GGGAGAAGGCCTGACTCAATTGGGTGTTCAGTTAACTCCGCGATTGGTAAAAATGGTATTGGATAAAACATCCTCCCTAAGTTCGGTTCTGAGGTTTCTTCAATGGGCCAAAACGCAACCAAGGTTTGAAGATGACAGCTCAACTTATGACAAAACTGCCGAAGCCCCAGAAATAAAGGAATGGAAACTGAAGGATGCTA
GAAGAGAAATATGTCAAGTTGTTGAAAAGGGCCATGAAGACATGGAAGCAACCCTAACTAAATTGGGTGTTCGGGTAACTCCACAACTAGTAAATCAAGTATTTGTTGAAATAAATTCCCGTAGTTCGGCTCTTAGGTTTTTCCAATGGGTCAAATTACAACCAGGGTTCAAACACTTCACTTCAATTTATGACTGTCTT
ACCAATATTCTCGGCCGCTCTAAGGACTTTGAAGCTCTGCAGAGGGTTTTGTCGGAGAGATTAGCTGTGTCTTGTAATTATTCTGCCAAAACATTTTCTTTCGCTACTGCCTGGCATAATGATCCGGATATGCTGAATGAATTTATGGAAATGTTTGAGAAGCTGAAGCTTCGTGTCAGAAGATTTGCTTATGAAATGCT
TATTGTAGCTCTCTGTAAAGAAAATCACATCAATGCAGCCATAGTTGCATTGGAAAAGATGGCAAGATCTGGTTGTGCTCCGAGCATGCAGACTTATCGTCCACTTATACAGGTGTACTGTCAGAACAACCAGATGGATAAGGTCCACGAGATTTTTGAGAGGATGAAAGACTGTCCTCGAGATTACACCTGCTATAGCA
TGATTTTAAGTGCACTTTGTAATAGGAAACGATTTGCAGAGTCAGTCGAATTTCTTCGGAGAATGGTTAATATGGGCTACAAACCAGATGCATATACATATAATATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTACGCCTTTGAATTTT
ACTTGAGGCATATTCCTGATGTACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGAATGGATCGCAAAATGGATTCGAGTAACTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGGTGCATGCAATCTTATGATGGAAATGAAAGCTAAGGGATTTGCTTGATG
CTTTGAATGTCAAAAAACCCCTTGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGAGGGAAGGAGGAGCTATTCCACGAGGTCAAAGgttgttgctttaataccctaatatgactaattgatatttgcgaagaattaaataattaaaaaaagtgctttatgtgtacaatggtttgtct
gtgagaaagtatagttattaattatcaataactttgctttagtgatgacttgttttgcaacaaagcagtgctatctggttttgttctgaatgacaaaactgcaggtttccgtccctttgcctttctgcagacacaatgtaaattaagttgttagtatggcttttggcagGTGTTTGTGTCAATTTGCTGGATTTACATCT
AAAAGATCTGGAGAGTAGTAAGATGCATCTGGTAAGATTTTCACTAACTAGGTGCAGGGAAC
Intron 2 GTAAGTATTT ... AACCGCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.95 | 3.5 | 1 | 4 |
| A2 | 71.43 | 1 | 2 | 3 |
| A3 | 60 | 5 | 6 | 9 |
| A4 | 77.78 | 1 | 3 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 81.25 | 5 | 17 | 25 |
| A7 | 57.33 | 15 | 17 | 23 |
| A8 | 51.75 | 9.5 | 11 | 8 |
| A9 | 70.71 | 6 | 8 | 20 |
| A10 | 57.14 | 6 | 7 | 9 |
>TRINITY_DN110732_c2_g8_i1 from sample A3 / Example spliced isoformTCCAAATGTTGATCGCTGAGCCCATATTCTCAAAACTCTACTGGCTTAATCCCTAGCAATAACAAAACCCCTGCGCCAACATTTCTAAATCCCATTGCATCGATTTCTCTTTGAAGCCAAGGGGGAAAATCGTCAACCGGCAAATTCAGACAATGGCTTGTGTGCGTCGTGCAGGACTGGACCTTGTCAAGGTAGCATTT
TCAAAAACCCAGCTGCGCCCTTTGCAATGGAGTTCTGCACCAGAAGAATGGTACCAAAATCTGGACTTGACGCCCCTCAAAACTTTCCAAAACGGTAAGAACTGTTTTCGTGATTATGAATTCCTTTTGAGCCATAAATTTTATGTAACGGATTCATTCGAGAGCGAGGACAAAGAAGAGGAAGACACCTTGCCCGAATT
GGGCAAAATTGACGAAACCCCAGAAAAAAAGAAATGGGATCTGGTGGATGCTGCAAGACAAATGTGTCAAATCATTGAAAAGGGGGATGGAGACACGGGAGAAGGCCTGACTCAATTGGGTGTTCAGTTAACTCCGCGATTGGTAAAAATGGTATTGGATAAAACATCCTCCCTAAGTTCGGTTCTGAGGTTTCTTCAAT
GGGCCAAAACGCAACCAAGGTTTGAAGATGACAGCTCAACTTATGACAAAACTGCCGAAGCCCCAGAAATAAAGGAATGGAAACTGAAGGATGCTAGAAGAGAAATATGTCAAGTTGTTGAAAAGGGCCATGAAGACATGGAAGCAACCCTAACTAAATTGGGTGTTCGGGTAACTCCACAACTAGTAAATCAAGTATTT
GTTGAAATAAATTCCCGTAGTTCGGCTCTTAGGTTTTTCCAATGGGTCAAATTACAACCAGGGTTCAAACACTTCACTTCAATTTATGACAGTCTTACCAATATTCTCGGCCACTCTAAGGACTTTGAAGCTCTGCAGAGGGTTTTGTCGGAGAGATTAGCTGTGTCTTGTAATTATTCTGCCAAAACATTTTCTTTCGC
TACTGCCTGGCATAATGATCCGGATATGCTGAATGAATTTATGGAAATGTTTGACAAGCTGAAGCTTCGTGTCAGAAGATTTGCTTATGAAATGCTTATTGTAGCTCTCTGTAAAGAAAATCACATCAATGCAGCCATAGTTGCATTGGAAAAGATGGCAAGATCTGGTTGTGCTCCGAGCATGCAGACTTATCGTCCAC
TTATACAGGTGTACTGTCAGAACAACCAGATGGATAAGGTCCACGAGATTTTTGAGAGGATGAAAGACTGTCCTCGAGATTACACCTGCTATAGCATGATTTTAAGTGCACTTTGTAATAGGAAACGATTTGCAGAGTCAGTCGAATTTCTTCGGAGAATGGTTAATATGGGCTACAAACCAGATGCATATACATATAAT
ATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTACGCCTTTGAATTTTACTTGAGGCATATTCCTGATGTACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGAATGGATCGCAAACTGGATTCGAGTAA
CTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGATGCATGCAATCTTATGATGGAAATGAAAGCTAAGGGATTTGCTTGATGCTTTGAATGTCAAAAAACCCCTTGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGAGGGAAGGAGGAGCTATTCCACGAGGT
CAAAGGTGTTTGTGTCAATTTGCTGGATTTACATCTAAAAGATCTGGAGAGTAGTAAGATGCATCTGTGAGCGCTGTCAACTGAACCACCTGGATACCAAACCCACGAGCCGGGGCCAGCCTAAATGTTGGACAGGACTAATCAACGAGAGTATGGCCACCACCGCAGTCGCACGAGCTTTTTCTGGGGTGCAGTTTTCT
GAAGGAGCTTACGCCCGCCGCACCTTCCCCGCAGGAATCGAAACTGGGCTTCTGTCGGGACAACCATCAGACCTCACCTCTGGCTCCTGCCCTCAACCCCATTCGGTGGATTTATATCTAAAGGGTATGGAGAGTAGTAAGATGCATCTGGTAAGATTTTCACTAACTAGGTGCAGGGAACACTTGTTAGGTCTTAGTTG
TGGCCTTTTCTAGGATAGAGATTTAGTCATTTAAAAATTTCCAAATCATTTTGTTGAGTACAAGCTAACATATAAAATATGAAGACATAACATTCAAATGTGTATGAAATTGACTTTACCAATACACAGTGAAATGCTAATCTGAAATAAACCATATCCAAATGGAAAGG
>TRINITY_DN110732_c2_g8_i2 from sample A3 / Example unspliced isoform:TCCAAATGTTGATCGCTGAGCCCATATTCTCAAAACTCTACTGGCTTAATCCCTAGCAATAACAAAACCCCTGCGCCAACATTTCTAAATCCCATTGCATCGATTTCTCTTTGAAGCCAAGGGGGAAAATCGTCAACCGGCAAATTCAGACAATGGCTTGTGTGCGTCGTGCAGGACTGGACCTTGTCAAGGTAGCATTT
TCAAAAACCCAGCTGCGCCCTTTGCAATGGAGTTCTGCACCAGAAGAATGGTACCAAAATCTGGACTTGACGCCCCTCAAAACTTTCCAAAACGGTAAGAACTGTTTTCGTGATTATGAATTCCTTTTGAGCCATAAATTTTATGTAACGGATTCATTCGAGAGCGAGGACAAAGAAGAGGAAGACACCTTGCCCGAATT
GGGCAAAATTGACGAAACCCCAGAAAAAAAGAAATGGGATCTGGTGGATGCTGCAAGACAAATGTGTCAAATCATTGAAAAGGGGGATGGAGACACGGGAGAAGGCCTGACTCAATTGGGTGTTCAGTTAACTCCGCGATTGGTAAAAATGGTATTGGATAAAACATCCTCCCTAAGTTCGGTTCTGAGGTTTCTTCAAT
GGGCCAAAACGCAACCAAGGTTTGAAGATGACAGCTCAACTTATGACAAAACTGCCGAAGCCCCAGAAATAAAGGAATGGAAACTGAAGGATGCTAGAAGAGAAATATGTCAAGTTGTTGAAAAGGGCCATGAAGACATGGAAGCAACCCTAACTAAATTGGGTGTTCGGGTAACTCCACAACTAGTAAATCAAGTATTT
GTTGAAATAAATTCCCGTAGTTCGGCTCTTAGGTTTTTCCAATGGGTCAAATTACAACCAGGGTTCAAACACTTCACTTCAATTTATGACAGTCTTACCAATATTCTCGGCCACTCTAAGGACTTTGAAGCTCTGCAGAGGGTTTTGTCGGAGAGATTAGCTGTGTCTTGTAATTATTCTGCCAAAACATTTTCTTTCGC
TACTGCCTGGCATAATGATCCGGATATGCTGAATGAATTTATGGAAATGTTTGACAAGCTGAAGCTTCGTGTCAGAAGATTTGCTTATGAAATGCTTATTGTAGCTCTCTGTAAAGAAAATCACATCAATGCAGCCATAGTTGCATTGGAAAAGATGGCAAGATCTGGTTGTGCTCCGAGCATGCAGACTTATCGTCCAC
TTATACAGGTGTACTGTCAGAACAACCAGATGGATAAGGTCCACGAGATTTTTGAGAGGATGAAAGACTGTCCTCGAGATTACACCTGCTATAGCATGATTTTAAGTGCACTTTGTAATAGGAAACGATTTGCAGAGTCAGTCGAATTTCTTCGGAGAATGGTTAATATGGGCTACAAACCAGATGCATATACATATAAT
ATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTACGCCTTTGAATTTTACTTGAGGCATATTCCTGATGTACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGAATGGATCGCAAACTGGATTCGAGTAA
CTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGATGCATGCAATCTTATGATGGAAATGAAAGCTAAGGGATTTGCTTGATGCTTTGAATGTCAAAAAACCCCTTGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGAGGGAAGGAGGAGCTATTCCACGAGGT
CAAAGGTGTTTGTGTCAATTTGCTGGATTTACATCTAAAAGATCTGGAGAGTAGTAAGATGCATCTGgtaagtatttcactaactaggtgcaggggaatttctgttgggtcttagttttggcaggtctttgtgtccattcggtggatttatttatttttccgtaaccgtgggaacctctccaaaccgcccagTGAGCGCT
GTCAACTGAACCACCTGGATACCAAACCCACGAGCCGGGGCCAGCCTAAATGTTGGACAGGACTAATCAACGAGAGTATGGCCACCACTGCAGTTGCACGAGCTTTTTCTGGGGTGCAGTTTTCTGAAGGAGCTTATGTCTGCCGCACCTCCCCCGTAGGAATCGAAACTGGGCTTCCATCGGGACAACCATCAGACCTC
ACCTCTGGCTCCTGCCCTCAACCCCATTCGGTGGATTTATATCTAAAGGGTATGGAGAGTAGTAAGATGCATCTGGTAAGATTTTCACTAACTAGGTGCAGGGAACACTTGTTAGGTCTTAGTTGTGGCCTTTTCTAGGATAGAGATTTAGTCATTTAAAAATTTCCAAATCATTTTGTTGAGTACAAGCTAACATATAA
AATATGAAGACATAACATTCAAATGTGTATGAAATTGACTTTACCAATACACAGTGAAATGCTAATCTGAAATAAACCATATCCAAATGGAAAGG
Intron 3 GTGTTTGTGT ... GTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.71 | 9 | 10 | 0 |
| A2 | 42.86 | 6 | 7 | 2 |
| A3 | 100 | 0 | 6 | 6 |
| A4 | 46.67 | 4 | 3 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 62.07 | 11 | 16 | 20 |
| A7 | 65.96 | 8 | 13 | 18 |
| A8 | 55.56 | 10 | 17 | 8 |
| A9 | 41.18 | 20 | 11 | 17 |
| A10 | 55.56 | 8 | 11 | 9 |
>TRINITY_DN44057_c1_g3_i3 from sample A7 / Example spliced isoformACAAACCAGATGCATATACATATAATATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTACGCCTTTGAATTTTACTTGAGGCATATTCCTGATGTACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGA
ATGGATCGCAAACTGGATTCGAGTAACTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGATGCATGCAATCTTATGATGGAAATGAAAGCTAAGGGATTTGCTTGATGCTTTGAATGTCAAAAAACCCCTTGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGA
GGGAAGGAGGAGCTATTCCACGAGGTCAAAGGTCTTTGTGTCCATTCGGTGGATTTATTTATTTTTCCGTAACCGTGGGAACCTCTCCAAACCGCCCAGTGAGCGCTGTCAACTGAACCACCTGGATACCAAACCCACGAGCCGGGGCCAGCCTAAATGTTGGACAGGACTAATCAACGAGAGTATGGCCACCACTGCAG
TTGCACGAGCTTTTTCTGGGGTGCAGTTTTCTGAAGGAGCTTATGTCTGCCGCACCTCCCCCGTAGGAATCGAAACTGGGCTTCCATCGGGACAACCATCAGACCTCACCTCTGGCTCCTGCCCTCAACCCCATTCGGTGGTTTTATATCTAAAGGGTATGGAGAGTAGTAAGATGCATCTGGTAAGATTTTCACTAACT
AGGTGCAGGGAACACTTGTTAGGTCTTAGTTGTGGCCTTTTCTAGGATAGAGATTTAGTCATTTGAAAATTTCCAAATCATTTTGTTGAGTACAAGCTAACATATAAAATATGAAGACATAACATTCAAATGTGTATGAAATTGACTTTACCAATACACAGTGAAATGCTAATCTGAAATAAACCATATCCAAATGGAAA
GGATTACGAGTATGATTGCTT
>TRINITY_DN44057_c1_g3_i6 from sample A7 / Example unspliced isoform:AATTCCTTTTGAGCCATAAATTTTATGTAACGGATTCATTCGAGAGCGAGGACAAAGAAGAGGAAGACACCTTGCCCGAATTGGGCAAAATTGACGAAACCCCAGAAAAAAAGAAATGGGATCTGGTGGATGCTGCAAGAGAAATGTGTCAAATCATTGAAAAGGGGGATGGAGACACGGGAGAATGCCTGACTCAATTG
GGTGTTCAGTTAACTCCGCGATTGGTAAAAATGGTATTGGATAAAACATCCTCCCTAAGTTCGGTTCTGAGGTTTCTTCAATGGGCCAAAACGCAACCAAGGTTTGAAGATGACAGCTCAACTTATGACAAAACTGCCGAAGCCCCAGAAATAAAGGAATGGAAACTGAAGGATGCTAGAAGAGAAATATGTCAAGTTGT
TGAAAAGGGCCATGAAGACATGGAAGCAACCCTAACTAAATTGGGTGTTCGGGTAACTCCACAACTAGTAAATCAAGTATTTGTTGAAATAAATTCCCGTAGTTCGGCTCTTAGGTTTTTCCAATGGGTCAAATTACAACCAGGGTTCAAACACTTCACTTCAATTTATGACTGTCTTACCAATATTCTCGGCCGCTCTA
AGGACTTTGAAGCTCTGCAGAGGGTTTTGTCGGAGAGATTAGCTGTGTCTTGTAATTATTCTGCCAAAACATTTTCTTTCGCTACTGCCTGGCATAATGATCCGGATATGCTGAATGAATTTATGGAAATGTTTGACAAGCTGAAGCTTCGTGTCAGAAGATTTGCTTATGAAATGCTTATTGTAGCTCTCTGTAAAGAA
AATCACATCAATGCAGCCATAGTTGCATTGGAAAAGATGGCAAGATCTGGTTGTGCTCCGAGCATGCAGACTTATCGTCCACTTATACAGGTGTACTGTCAGAACAACCAGATGGATAAGGTCCACGAGATTTTTGAGAGGATGAAAGACTGTCCTCGAGATTACACCTGCTATAGCATGATTTTAAGTGCACTTTGTAA
TAGGAAACGATTTGCAGAGACAGTCGAATTTCTTCGGAGAATGGTTAATATGGGCTACAAACCAGATGCATATACATATAATATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTACGCCTTTGAATTTTACTTGAGGCATATTCCTGATGT
ACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGAATGGATCGCAAACTGGATTCGAGTAACTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGATGCATGCAATCTTATGATGGAAATGAAAGCTAAGGGATTTGCTTGATGCTTTGAATGTCAAAAAACCCCT
TGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGAGGGAAGGAGGAGCTATTCCACGAGGTCAAAGgtgtttgtgtcaatttgctggatttacatctaaaagatctggagagtagtaagatgcatctggtaagtatttcactaactaggtgcaggggaatttctgttgggtcttagttt
tggcagGTCTTTGTGTCCATTCGGTGGATTTATTTATTTTTCCGTAACCGTGGGAACCTCTCCAAACCGCCCAGTGAGCGCTGTCAACTGAACCACCTGGATACCAAACCCACGAGCCGGGGCCAGCCTAAATGTTGGACAGGACTAATCAACGAGAGTATGGCCACCACTGCAGTTGCACGAGCTTTTTCTGGGGTGCA
GTTTTCTGAAGGAGCTTATGTCTGCCGCACCTCCCCCGTAGGAATCGAAACTGGGCTTCCATCGGGACAACCATCAGACCTCACCTCTGGCTCCTGCCCTCAACCCCATTCGGTGGTTTTATATCTAAAGGGTATGGAGAGTAGTAAGATGCATCTGGTAAGATTTTCACTAACTAGGTGCAGGGAACACTTGTTAGGTC
TTAGTTGTGGCCTTTTCTAGGATAGAGATTTAGTCATTTGAAAATTTCCAAATCATTTTGTTGAGTACAAGCTAACATATAAAATATGAAGACATAACATTCAAATGTGTATGAAATTGACTTTACCAATACACAGTGAAATGCTAATCTGAAATAAACCATATCCAAATGGAAAGGATTACGAGTATGATTGCTT
Intron 4 GTTGTTGCTT ... GTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.93 | 9 | 11 | 0 |
| A2 | 47.83 | 6 | 9 | 2 |
| A3 | 100 | 0 | 2 | 6 |
| A4 | 46.67 | 4 | 3 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 73.81 | 11 | 42 | 20 |
| A7 | 74.19 | 8 | 28 | 18 |
| A8 | 68.25 | 10 | 35 | 8 |
| A9 | 54.02 | 20 | 30 | 17 |
| A10 | 48.39 | 8 | 6 | 9 |
>TRINITY_DN44057_c1_g3_i3 from sample A7 / Example spliced isoformACAAACCAGATGCATATACATATAATATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTACGCCTTTGAATTTTACTTGAGGCATATTCCTGATGTACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGA
ATGGATCGCAAACTGGATTCGAGTAACTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGATGCATGCAATCTTATGATGGAAATGAAAGCTAAGGGATTTGCTTGATGCTTTGAATGTCAAAAAACCCCTTGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGA
GGGAAGGAGGAGCTATTCCACGAGGTCAAAGGTCTTTGTGTCCATTCGGTGGATTTATTTATTTTTCCGTAACCGTGGGAACCTCTCCAAACCGCCCAGTGAGCGCTGTCAACTGAACCACCTGGATACCAAACCCACGAGCCGGGGCCAGCCTAAATGTTGGACAGGACTAATCAACGAGAGTATGGCCACCACTGCAG
TTGCACGAGCTTTTTCTGGGGTGCAGTTTTCTGAAGGAGCTTATGTCTGCCGCACCTCCCCCGTAGGAATCGAAACTGGGCTTCCATCGGGACAACCATCAGACCTCACCTCTGGCTCCTGCCCTCAACCCCATTCGGTGGTTTTATATCTAAAGGGTATGGAGAGTAGTAAGATGCATCTGGTAAGATTTTCACTAACT
AGGTGCAGGGAACACTTGTTAGGTCTTAGTTGTGGCCTTTTCTAGGATAGAGATTTAGTCATTTGAAAATTTCCAAATCATTTTGTTGAGTACAAGCTAACATATAAAATATGAAGACATAACATTCAAATGTGTATGAAATTGACTTTACCAATACACAGTGAAATGCTAATCTGAAATAAACCATATCCAAATGGAAA
GGATTACGAGTATGATTGCTT
>TRINITY_DN44057_c1_g3_i2 from sample A7 / Example unspliced isoform:AATTCCTTTTGAGCCATAAATTTTATGTAACGGATTCATTCGAGAGCGAGGACAAAGAAGAGGAAGACACCTTGCCCGAATTGGGCAAAATTGACGAAACCCCAGAAAAAAAGAAATGGGATCTGGTGGATGCTGCAAGAGAAATGTGTCAAATCATTGAAAAGGGGGATGGAGACACGGGAGAATGCCTGACTCAATTG
GGTGTTCAGTTAACTCCGCGATTGGTAAAAATGGTATTGGATAAAACATCCTCCCTAAGTTCGGTTCTGAGGTTTCTTCAATGGGCCAAAACGCAACCAAGGTTTGAAGATGACAGCTCAACTTATGACAAAACTGCCGAAGCCCCAGAAATAAAGGAATGGAAACTGAAGGATGCTAGAAGAGAAATATGTCAAGTTGT
TGAAAAGGGCCATGAAGACATGGAAGCAACCCTAACTAAATTGGGTGTTCGGGTAACTCCACAACTAGTAAATCAAGTATTTGTTGAAATAAATTCCCGTAGTTCGGCTCTTAGGTTTTTCCAATGGGTCAAATTACAACCAGGGTTCAAACACTTCACTTCAATTTATGACTGTCTTACCAATATTCTCGGCCGCTCTA
AGGACTTTGAAGCTCTGCAGAGGGTTTTGTCGGAGAGATTAGCTGTGTCTTGTAATTATTCTGCCAAAACATTTTCTTTCGCTACTGCCTGGCATAATGATCCGGATATGCTGAATGAATTTATGGAAATGTTTGACAAGCTGAAGCTTCGTGTCAGAAGATTTGCTTATGAAATGCTTATTGTAGCTCTCTGTAAAGAA
AATCACATCAATGCAGCCATAGTTGCATTGGAAAAGATGGCAAGATCTGGTTGTGCTCCGAGCATGCAGACTTATCGTCCACTTATACAGGTGTACTGTCAGAACAACCAGATGGATAAGGTCCACGAGATTTTTGAGAGGATGAAAGACTGTCCTCGAGATTACACCTGCTATAGCATGATTTTAAGTGCACTTTGTAA
TAGGAAACGATTTGCAGAGACAGTCGAATTTCTTCGGAGAATGGTTAATATGGGCTACAAACCAGATGCATATACATATAATATATTGGTTCGTGCTGCTTGCAATTTAGGGGGAATCCAAAGTGCGCTTCAGCTCTTTGATAGATTGAAAGAGGAAGGGATTACGCCTTTGAATTTTACTTGAGGCATATTCCTGATGT
ACTCCTCCAAATCAGAGGTTTTGATGGAGCACATTCATTCCTGATTCAGCAGTGGAATGGATCGCAAACTGGATTCGAGTAACTATAGATACTTGATTAGGGTTTGTAACAAATCAGGCCAAGAGCAAGATGCATGCAATCTTATGATGGAAATGAAAGCTAAGGGATTTGCTTGATGCTTTGAATGTCAAAAAACCCCT
TGCTTCTACTTGGCAATGGGATTTGTTGATGTGCTGCATATCAATCAAGGGATAGAGGGAAGGAGGAGCTATTCCACGAGGTCAAAGgttgttgctttaataccctaatatgactaattgatatttgcgaagaattaaataattaaaaaaagtgctttatgtgtacaatggtttgtctgtgagaaagtatagttattaat
tatcaataactttgctttagtgatgacttgttttgcaacaaagcagtgctatctggttttgttctgaatgacaaaactgcaggtttccgtccctttgcctttctgcagacacaatgtaaattaagttgttagtatggcttttggcaggtgtttgtgtcaatttgctggatttacatctaaaagatctggagagtagtaag
atgcatctggtaagtatttcactaactaggtgcaggggaatttctgttgggtcttagttttggcagGTCTTTGTGTCCATTCGGTGGATTTATTTATTTTTCCGTAACCGTGGGAACCTCTCCAAACCGCCCAGTGAGCGCTGTCAACTGAACCACCTGGATACCAAACCCACGAGCCGGGGCCAGCCTAAATGTTGGAC
AGGACTAATCAACGAGAGTATGGCCACCACTGCAGTTGCACGAGCTTTTTCTGGGGTGCAGTTTTCTGAAGGAGCTTATGTCTGCCGCACCTCCCCCGTAGGAATCGAAACTGGGCTTCCATCGGGACAACCATCAGACCTCACCTCTGGCTCCTGCCCTCAACCCCATTCGGTGGTTTTATATCTAAAGGGTATGGAGA
GTAGTAAGATGCATCTGGTAAGATTTTCACTAACTAGGTGCAGGGAACACTTGTTAGGTCTTAGTTGTGGCCTTTTCTAGGATAGAGATTTAGTCATTTGAAAATTTCCAAATCATTTTGTTGAGTACAAGCTAACATATAAAATATGAAGACATAACATTCAAATGTGTATGAAATTGACTTTACCAATACACAGTGAA
ATGCTAATCTGAAATAAACCATATCCAAATGGAAAGGATTACGAGTATGATTGCTT