NA ----> NA
Intron 1 GTAAGGCAAT ... ATCTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.95 | 29 | 22 | 15 |
| A2 | 18.18 | 27 | 8 | 4 |
| A3 | 44.12 | 19 | 12 | 18 |
| A4 | 13.79 | 25 | 6 | 2 |
| A5 | 18.75 | 13 | 3 | 3 |
| A6 | 10 | 9 | 0 | 2 |
| A7 | 17.43 | 45 | 12 | 7 |
| A8 | 16.42 | 28 | 5 | 6 |
| A9 | 14.29 | 48 | 11 | 5 |
| A10 | 20.55 | 58 | 13 | 17 |
>TRINITY_DN116941_c0_g3_i3 from sample A1 / Example spliced isoformACTCTATTTAGTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATACTTTGGGAAGAAGGCGCACCAGTTGGAAGAAATACTCAGGCAACAGTCATCTTTAATATATTGGAGGTTATTCTCATTATCTACTCTATTTAGTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATGCTTTGGGAAGAAGGCGCACCAGTT
GGAAGAAATACCTAGGCAACATTCATCTTTGATATATTGGAGGTTATTCCTGAGAAGGGCGAGCCATACATCAGTGCCCTTCTGCTGCCATCGTAACCAAGAGAAGAAAGGGAGAAGAACTGTTGAAGGGCGTAGGAGTTCACCTCCATATATCAGTCAGCGTACCTGCTATTATCTGTTATTTAGAAAATCGTGCCACT
ACAAGAAGGGCCTTACTGCTGTACCAGTTATTCACCTCACTCTTTCTGCTAATACACAAGGAGGGCGCAATCATTGTATGGGTTCACTTGCTGGTGGGGTAACGCCCAGCTAGGGGCATCATTATTCCATTACACAGGCTGTATTTTGTGGTCAAAGAGGGGCTACGATTTGACTGTCCATATTACAGTGGAGCTGAACG
TTGCAAAGGAGAAGATATATCAGCTTACATCACCAAAAGTGATAGTAATTCAGCAGAATTATTTCAAACTTCACCAAGCAGTGGGTTATCTTCGGGTTCAGTAAATCAACATGCCGGCTCCTAAAACGTTAACCCTAGATGACGAAGTCGATGATGCAGGCTTTGGGTTAGAAACATGCCATTTCTTTGATGGAAGTGAC
AATGAAGACAATGGCGATGGAAACACTGACTTTCCTAGTTATCTTCCTGAGGATGGACGACTCAGATTGCGACCCAACATATCATTGGAAGGGACAGAGTATTCTGGTCAGAAGAGCAACAGAAAGGAAGCATTTGGTGAAGATGGCAGGAAATCGAAATTGCTTGTAGATAGATTGGCTAGGAAAAGGCACCGCAGCGC
ACATTCAGATTCTGAAAACATCTCTGGTGAAGAACTTGACTCTGAAGAAGGTGACGATGAGCCACAGGCTGTACACTTAGAAGATGAGATGGAAGCCCTCACAAAAGAATATACAGATCTGCGTGAAGAGGAAGACAACCTTTTGAGGAACTTGAAGGAACATGGGGATGAAGACTTACGGAAAGGTCAAGCAGTAAAGA
ACCAAAAGGTTCTATGGGACAAAGCTTTGGAAAATAGGATATGTTTACAAAAAGTCTTCTCATCTTGTAATCAATTACCACAGGCTTCTGTGAAGTCTTATTTCTGCAAATCCGACGACAATATTGACAGAGCATATTCTGAACTGATATCCTCTGCTCATAAAACACTAGATTGCCTTCTAGATCTGCAGGAGGTTTTA
ATTGACAAGAATAGTGCTATCAGTGAAGCTTTTGATAATGGTAATATTAAATCAGGAAATGAAGATTGTAAAAACAACATGCTATCATCAGAAACGGATGAAGATTGGGCTAGAATAAATACACTTCATACCAGAATTGTTCCATTCCGTAATC
>TRINITY_DN116941_c0_g3_i1 from sample A1 / Example unspliced isoform:ACTCTATTTAGTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATACTTTGGGAAGAAGGCGCACCAGTTGGAAGAAATACTCAGGCAACAGTCATCTTTAATATATTGGAGGTTATTCTCATTATCTACTCTATTTAGTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATGCTTTGGGAAGAAGGCGCACCAGTT
GGAAGAAATACCTAGGCAACATTCATCTTTGATATATTGGAGGTTATTCCTGAGAAGGGCGAGCCATACATCAGTGCCCTTCTGCTGCCATCGTAACCAAGAGAAGAAAGGGAGAAGAACTGTTGAAGGGCGTAGGAGTTCACCTCCATATATCAGTCAGCGTACCTGCTATTATCTGTTATTTAGAAAATCGTGCCACT
ACAAGAAGGGCCTTACTGCTGTACCAGTTATTCACCTCACTCTTTCTGCTAATACACAAGGAGGGCGCAATCATTGTATGGGTTCACTTGCTGGTGGGGTAACGCCCAGCTAGGGGCATCATTATTCCATTACACAGGCTGTATTTTGTGGTCAAAGAGGGGCTACGATTTGACTGTCCATATTACAGTGGAGCTGAACG
TTGCAAAGGAGAAGATATATCAGCTTACATCACCAAAAGTGATAGTAATTCAGCAGAATTATTTCAAACTTCACCAAGCAGTGGGTTATCTTCGGGTTCAGTAAATCAACATGCCGGCTCCTAAAACGTTAACCCTAGATGACGAAGTCGATGATGCAGGCTTTGGGTTAGAAACATGCCATTTCTTTGATGGAAGTGAC
AATGAAGACAATGGCGATGGAAACACTGACTTTCCTAGTTATCTTCCTGAGGATGGACGACTCAGATTGCGACCCAACATATCATTGGAAGGGACAGAGTATTCTGGTCAGAAGAGCAACAGAAAGGAAGCATTTGGTGAAGATGGCAGGAAATCGAAATTGCTTGTAGATAGATTGGCTAGGAAAAGGCACCGCAGCGC
ACATTCAGATTCTGAAAACATCTCTGGTGAAGAACTTGACTCTGAAGAAGGTGACGATGAGCCACAGGCTGTACACTTAGAAGATGAGATGGAAGCCCTCACAAAAGAATATACAGATCTGCGTGAAGAGGAAGAgtaaggcaattatttaaacagtgtttttctgtatgttttcaatgctacacagggattaggccaga
ctgaaacctttcaataacccatggcaattacatgttttgttgaaggttcatttatttgattgaaatacttgttttcatttaacctatttagttgtttaggtttaattaacaatatattttctgcatgatatgtgtgtgtgatgttttgtgtatgttcatgtggactaaacatttaatctaagagttgcaattatgttctt
ataagtattccaggtgtcagtctgatattttgtctcttaataattacaatgacgggtagcctattttgtatttattgttttaaggacaagtatttaaattattttactagaaatatttaacaagagcatctccttctgagtcgtcacttcattcttcatcattggataaaattatttaatttctgttttgcatagtggta
aagctccctttttctctcctgtgttcatgcatgtgaacatgtgcattacatgtattcattgaaaatacatccatatacacacatacagacaaaaacgtgttgtgtttgcatgaacacacaagcatgtgtatgtacatgtacacgactaacatatgagttgtttatggtgttcaaacaatgcatttgtgaaatagcatctg
atatcctcctcagctatttgtggagtacacatccatacatatttatgggcagagttctatataagcttcgagttcaataaattctttcactactttggaaatatacctccaaggtctatacattatgatgtgcagaattttgcacaaacttctgagatgtgaaacctgtattatgatttatcttcttgataagcgtaggt
aatataaattgcagtttgcctgatggagtggtatcactgattactgttctttttcctgtttttaacttctgacagccttctgtgatctgtgtagCAACCTTTTGAGGAACTTGAAGGAACATGGGGATGAAGACTTACGGAAAGGTCAAGCAGTAAAGAACCAAAAGGTTCTATGGGACAAAGCTTTGGAAAATAGGATA
TGTTTACAAAAAGTCTTCTCATCTTGTAATCAATTACCACAGGCTTCTGTGAAGTCTTATTTCTGCAAATCCGACGACAATATTGACAGAGCATATTCTGAACTGATATCCTCTGCTCATAAAACACTAGATTGCCTTCTAGATCTGCAGGAGGTTTTAATTGACAAGAATAGTGCTATCAGTGAAGCTTTTGATAATGG
TAATATTAAATCAGGAAATGAAGATTGTAAAAACAACATGCTATCATCAGAAACGGATGAAGATTGGGCTAGAATAAATACACTTCATACCAGAATTGTTCCATTCCGTAATC
Intron 2 GTTTGTGTGC ... AATATAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.67 | 25 | 5 | 1 |
| A2 | 29.17 | 17 | 7 | 0 |
| A3 | 23.53 | 13 | 4 | 0 |
| A4 | 15 | 17 | 3 | 1 |
| A5 | 40 | 3 | 2 | 2 |
| A6 | 14.29 | 12 | 2 | 0 |
| A7 | 26 | 37 | 13 | 2 |
| A8 | 24.68 | 58 | 19 | 0 |
| A9 | 15.25 | 50 | 9 | 0 |
| A10 | 9.09 | 20 | 2 | 0 |
>TRINITY_DN37328_c0_g1_i3 from sample A7 / Example spliced isoformCAAGAAACAAGCCATAACTTCTTGTTATTTCCTTTCATGGCCAGCTATCATACAAATCTCTTGCGCATTACGGTGACTGAGTTACCATTAAAATTTCGGATGTGGAGTTGGCGGCGAGTTTAGTAACTACCTGAATTATCTGAAGAGGGCGCACTCGTGGTTGAGTTCTAGGCTTCTTCTCTCATTATTTACTCTAATTA
CTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATGCTTTGGGAAGAAGGCGCACCAGTTGGAAGAAATACTCAGGCAACAGTCATCTTTAATATATTGGAGGTTATTCTCATTATCTACTCTATTTAGTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATGCTTTGGGAAGAAGGCGCACCAGTTGGAAGAAATA
CCTAGGCAACATTCATCTTTGATATATTGGAGGTTATTCCTGAGAAGGGCGAGCCATACATCAGTGCCCTTCTGCTGCCATCGTAACCAAGAGAAGAAAGGGAGAAGAACTGTTGAAGGGCGTAGGAGTTCACCTCCATATATCAGTCAGCGTACCTGCTATTATCTGTTATTTAGAAAATCGTGCCACTACAAGAAGGG
CCTTACTGCTGTACCAGTTATTCACCTCACTCTTTCTGCTAATACACAAGGAGGGCGCAATCATTGTATGGGTTCACTTGCTGGTGGGGTAACGCCCAGCTAGGGGCATCATTATTCCATTACACAGGCTGTATTTTGTGGTCAAAGAGGGGCTACGATTTGACTGTCCATATTACAGTGGAGCTGAACGTTGCAAAGGA
GAAGATATATCAGCTTACATCACCAAAAGTGATAGTAATTCAGCAGAATTATTTCAAACTTCACCAAGCAGTGGGTTATCTTCGGGTTCAGTAAATCAACATGCCGGCTCCTAAAACGTTAACCCTAGATGACGAAGTCGATGATGCAGGCTTTGGGTTAGAAACATGCCATTTCTTTGATGGAAGTGACAATGAAGACA
ATGGCGATGGAAACACTGACTTTCCTAGTTATCTTCCTGAGGATGGACGACTCAGATTGCGACCCAACATATCATTGGAAGGGACAGAGTATTCTGGTCAGAAGAGCAACAGAAAGGAAGCATTTGGTGAAGATGGCAGGAAATCGAAATTGCTTGTAGATAGATTGGCTAGGAAAAGGCACCGCAGCGCACATTCAGAT
TCTGAAAACATCTCTGGTGAAGAACTTGACTCTGAAGAAGGTGACGATGAGCCACAGGCTGTACACTTAGAAGATGAGATGGAAGCCCTCACAAAAGAATATACAGATCTGCGTGAAGAGGAAGACAACCTTTTGAGGAACTTGAAGGAACATGGGGATGAAGACTTACGGAAAGGTCAAGCAGTAAAGAACCAAAAGGT
TCTATGGGACAAAGCTTTGGAAAATAGGATATGTTTACAAAAAGTCTTCTCATCTTGTAATCAATTACCACAGGCTTCTGTGAAGTCTTATTTCTGCAAATCCGACGACAATATTGACAGAGCATATTCTGAACTGATATCCTCTGCTCATAAAACACTAGATTGCCTTCTAGATCTGCAGGAGGTTTTAATTGACAAGA
ATAGTGCTATCAGTGAAGCTTTTGATAATGGTAATATTAAATCAGGAAATGAAGATTGTAAAAACAACATGCTATCATCAGAAACGGATGAAGATTGGGCTAGAATAAATACACTTCATACCAGAATTGTTCCATTCCGTAATCACTCTGTAGACAAATGGCATCGAAAGACACAGCTATCAGCAGGTGCTGCAGCAATG
AAAAACAAATTACGTGCTTTTAATCAGAGCATAACTCAGCAAGTGTCAGCATATATGAGAGACCCTACAAGCATGATCAAGAGGATGCAACAGATGCCATCTTCTGTTCATGTCCTCGGAGTTTCTCCACAGGGACCAGTAGTTGAAAAAACAGAGGGCTCAGAAAGAAATGCTCAGGAAGTAAACGAGGATGGTGATCC
AGAGTTACTTGATGACTCTGAGTTCTACCAGCTACTGCTTCAAGAGTTTCTTGAGTCAACAGATCCTACATCCTTAGGGTCAAGTATCCATTCAATGAAAAAGATGAAAAATAGAAAAAGAAAGGCCGTGGATAGACGGGCTTCTAAAAGTCGCAAGATAAGGTATAATGCTCACGAGAAAATCGTAAATTTTATGGCAC
CAGAACCTATGGTCCTACCTCCTATGGCACCGAAATTGTTTTCAAATTTGTTTGGGCAACACAATGCTCAGTCAGTATGAGGTGGAGTTTCTTGTTAATAAAGATAGTAATGATTGCAAGATTCGGCAGGAATCTTGTGCCTTTATTATCGCAAATGTTTTAACAAGAAAGAAAGAAATAAGGGCTCCGAGTTATAGGTC
CATGTTTCATGTGGATGGTTCTTTCATAGTCCAGCATTTTAGAGACTGAACGAAATAAAATTTCAAGGATATGCTGATTTTAGGTTCTTTATTTATGGTATATAGAATTTAACATTTTTATCAAGCAGATCTAAATTATGTTGTAGATTTGGTCTTTTTTTATCAATCCACAGAGGTTAATTTTTTTCTTCTATATAAAT
TGTAAGCCTCTCTATCCCTTACTCTTGTTCTTAGCATTCATAGCAGGGTTTCATTACATGAGAGGAGTCATTTAAAATATCTATTAATCAATATTATGGCTCCATTCTGGTATCAGTTTGTCATTGATGCGTCATGATAAGTTGATACCATAAAAGGAAAGATTTTGTTGGTAGGGTAATTGTGTAAAGATTATATGAAA
AGTGTTTGCTGTTAAAAAAGATTTAGTAGCTTGGCCGTTAATATCTGCATTGGAAACCGAGCATTTGAAACGAGCTCAGTGTAGTGATTTGATCACTAGTGTGGGCCTGCATAGTATCGCCATATGTAGAAGACATTTCCATCGTATATAAAGCCCGGTGACAACCTTTTTCGGAAGCAAATAACTTTTTATATTTAGGC
TGTGGCACGAGCACAATTTTTTTCACAATTTAAGATCTCTGATGACTGTTTGTATGGACACCATATTATTTACGGTGAAACACTCGCAAAAAGCTTCATTGTAAATAACTGAAATTGAAGAATGATGGGTACAAGATAATTTTTCCCGTTATACTAAGGAGCCGC
>TRINITY_DN37328_c0_g1_i2 from sample A7 / Example unspliced isoform:CAAGAAACAAGCCATAACTTCTTGTTATTTCCTTTCATGGCCAGCTATCATACAAATCTCTTGCGCATTACGGTGACTGAGTTACCATTAAAATTTCGGATGTGGAGTTGGCGGCGAGTTTAGTAACTACCTGAATTATCTGAAGAGGGCGCACTCGTGGTTGAGTTCTAGGCTTCTTCTCTCATTATTTACTCTAATTA
CTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATGCTTTGGGAAGAAGGCGCACCAGTTGGAAGAAATACTCAGGCAACAGTCATCTTTAATATATTGGAGGTTATTCTCATTATCTACTCTATTTAGTCTGCTGCAAGAGGGCGAACATCCCCACAGTCCATGCTTTGGGAAGAAGGCGCACCAGTTGGAAGAAATA
CCTAGGCAACATTCATCTTTGATATATTGGAGGTTATTCCTGAGAAGGGCGAGCCATACATCAGTGCCCTTCTGCTGCCATCGTAACCAAGAGAAGAAAGGGAGAAGAACTGTTGAAGGGCGTAGGAGTTCACCTCCATATATCAGTCAGCGTACCTGCTATTATCTGTTATTTAGAAAATCGTGCCACTACAAGAAGGG
CCTTACTGCTGTACCAGTTATTCACCTCACTCTTTCTGCTAATACACAAGGAGGGCGCAATCATTGTATGGGTTCACTTGCTGGTGGGGTAACGCCCAGCTAGGGGCATCATTATTCCATTACACAGGCTGTATTTTGTGGTCAAAGAGGGGCTACGATTTGACTGTCCATATTACAGTGGAGCTGAACGTTGCAAAGGA
GAAGATATATCAGCTTACATCACCAAAAGTGATAGTAATTCAGCAGAATTATTTCAAACTTCACCAAGCAGTGGGTTATCTTCGGGTTCAGTAAATCAACATGCCGGCTCCTAAAACGTTAACCCTAGATGACGAAGTCGATGATGCAGGCTTTGGGTTAGAAACATGCCATTTCTTTGATGGAAGTGACAATGAAGACA
ATGGCGATGGAAACACTGACTTTCCTAGTTATCTTCCTGAGGATGGACGACTCAGATTGCGACCCAACATATCATTGGAAGGGACAGAGTATTCTGGTCAGAAGAGCAACAGAAAGGAAGCATTTGGTGAAGATGGCAGGAAATCGAAATTGCTTGTAGATAGATTGGCTAGGAAAAGGCACCGCAGCGCACATTCAGAT
TCTGAAAACATCTCTGGTGAAGAACTTGACTCTGAAGAAGGTGACGATGAGCCACAGGCTGTACACTTAGAAGATGAGATGGAAGCCCTCACAAAAGAATATACAGATCTGCGTGAAGAGGAAGACAACCTTTTGAGGAACTTGAAGGAACATGGGGATGAAGACTTACGGAAAGGTCAAGCAGTAAAGAACCAAAAGGT
TCTATGGGACAAAGCTTTGGAAAATAGGATATGTTTACAAAAAGTCTTCTCATCTTGTAATCAATTACCACAGGCTTCTGTGAAGTCTTATTTCTGCAAATCCGACGACAATATTGACAGAGCATATTCTGAACTGATATCCTCTGCTCATAAAACACTAGATTGCCTTCTAGATCTGCAGGAGGTTTTAATTGACAAGA
ATAGTGCTATCAGTGAAGCTTTTGATAATGGTAATATTAAATCAGGAAATGAAGATTGTAAAAACAACATGCTATCATCAGAAACGGATGAAGATTGGGCTAGAATAAATACACTTCATACCAGAATTGTTCCATTCCGTAATCACTCTGTAGACAAATGGCATCGAAAGACACAGCTATCAGCAGGTGCTGCAGCAATG
AAAAACAAATTACGTGCTTTTAATCAGgtttgtgtgcagatttaaatccttaatcaattttgacccctactgctggaatcctaatactgtggcaattattactgctggatggtggtttttgaatatacctactgcaatataacagAGCATAACTCAGCAAGTGTC