sp|Q9SUH5|AUG8_ARATH ----> AUGMIN subunit 8
Intron 1 GCAGTGTGGA ... TCTTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.01 | 38 | 52 | 53 |
| A2 | 43.86 | 32 | 18 | 32 |
| A3 | 39.27 | 58 | 38 | 37 |
| A4 | 40.45 | 53 | 37 | 35 |
| A5 | 39.53 | 26 | 20 | 14 |
| A6 | 48.51 | 26 | 24 | 25 |
| A7 | 41.43 | 82 | 55 | 61 |
| A8 | 58.54 | 17 | 21 | 27 |
| A9 | 50.22 | 56 | 55 | 58 |
| A10 | 49.09 | 70 | 68 | 67 |
>TRINITY_DN106955_c1_g1_i4 from sample A3 / Example spliced isoformATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGAAGAAGGGTAAGAA
TTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCAT
TATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTC
AAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCA
GCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAG
GGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAG
TTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTT
CCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAG
TCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAA
ACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGG
CCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCG
GGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTT
CGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
>TRINITY_DN106955_c1_g1_i2 from sample A3 / Example unspliced isoform:ATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGgcagtgtggactgc
aaagaaatgattcactgggtttgctaagaatttatatgctcttgttctgcttcttgtttagAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATC
AGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGT
TCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCA
GAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATC
AAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATT
TGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTA
GGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCA
GATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTG
CATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATT
CCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGC
TACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTT
GATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAA
GCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
Intron 2 GTAATGGGAT ... CATTGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.93 | 101 | 14.9 | 15 |
| A2 | 16.13 | 52 | 5.5 | 10 |
| A3 | 16.67 | 85 | 11.1 | 17 |
| A4 | 21.52 | 62 | 2.5 | 17 |
| A5 | 17.65 | 28 | 4.2 | 6 |
| A6 | 18.83 | 418 | 39.2 | 97 |
| A7 | 18.36 | 556 | 65.5 | 125 |
| A8 | 20.03 | 658 | 73.5 | 164.8 |
| A9 | 19.96 | 389 | 37.8 | 97 |
| A10 | 21.39 | 316 | 30.6 | 86 |
>TRINITY_DN43557_c0_g1_i4 from sample A7 / Example spliced isoformGCAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCGTTAAAGATTAAATC
TGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACATTAAATAAAAAGAAG
AGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGAAATACATCCTGTAT
ATGTTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGGTCAGTCCCAATGTTGATAAATTAGATG
TTTTAGGGCTATAGGGATTTGTGTTTGCTAGATATAGAATTGATAGATATTCTTTCATTCTTTTATCCAATTAGGCAGTGTGGACTGCAAAGAAATGATTCACTGGGTTTGCTAAGAATTTATATGCTCTTGTTCTGCTTCTTGTTTAGAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTG
GAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCA
GATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAG
GAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCAC
TGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCT
AATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGC
CAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAA
TCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAAC
CGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAATGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTA
TCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGG
TTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTAT
TGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAA
AAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAATATTTTTTTCTTAAAGCTCTTAAAATGTATGGTTGAACTACCTACTACATGATACACTTTGTTTG
>TRINITY_DN43557_c0_g1_i2 from sample A7 / Example unspliced isoform:CTATATGCAGTCTGCTTCCCAAGTGCTATGTTATAATATTTTATTGTGTATATGGATGCAATGAGAATGAAGGGCTTGACAACTAGATATGTTGTACCTTGTTACATTTACAAGCATGCATGCAAACACACACATAATAAAACGCAGATGTAATGATGCAAGTGTGTATATAATATCTATATATCCATGTGCATATCAAA
AGGCTATGGAATTATCCATGGCCATTATTGAAATTCCCAATGTGTGTATCATATCTTATCAAATAGACTTCATGACCATATAGGTATCTTATCTATCATTTCAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACC
GGAGCATTAGAGgtaatgggataatgcttcataacttctagcggtatcattttttggggcagcaatgattatgccataattaactaactatgccattgcacagGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTT
GATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAA
AATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAATATTTTTTTCTTAAAGCTCTTAAAATGTATGGTTGAACTACCTACTACATGATACACTTTGTTTG
Intron 3 GTACGTATAT ... TATGGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.7 | 108 | 26 | 27 |
| A2 | 26.26 | 73 | 30 | 22 |
| A3 | 22.08 | 120 | 25 | 43 |
| A4 | 23.77 | 85 | 21 | 32 |
| A5 | 22.73 | 51 | 18 | 12 |
| A6 | 24.76 | 79 | 32 | 20 |
| A7 | 22.41 | 135 | 45 | 33 |
| A8 | 19.59 | 39 | 6 | 13 |
| A9 | 23.91 | 105 | 35 | 31 |
| A10 | 24.09 | 167 | 53 | 53 |
>TRINITY_DN98353_c1_g1_i3 from sample A4 / Example spliced isoformTCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACC
GACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTT
TACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTT
CAAGAAATACATCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGGTCAGTCCCAATGTTGATAAATTAG
ATGTTTTAGGGCTATAGGGATTTGTGTTTGCTAGATATAGAATTGATAGATATTCTTTCATTCTTTTATCCAATTAGGCAGTGTGGACTGCAAAGAAATGATTCACTGGGTTTGCTAAGAATTTATATGCTCTTGTTCTGCTTCTTGTTTAGAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGAT
TTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAA
TCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCA
GAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAG
CACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGA
CCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAG
AGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAA
TAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCAT
AACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAATGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGC
TTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCA
AGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGC
TATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGT
TAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCC
>TRINITY_DN98353_c1_g1_i4 from sample A4 / Example unspliced isoform:TCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACC
GACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTT
TACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTT
CAAGAAATACATgtacgtatatatatttatatatatccgtttcttttaaatagttacccaaagaggattgaaatattatcctgtgataatgtgatcgttatgtgatattttgataacagcctgtatatggtccagCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTT
ATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGGTCAGTCCCAATGTTGATAAATTAGATGTTTTAGGGCTATAGGGATTTGTGTTTGCTAGATATAGAATTGATAGATATTCTTTCATTCTTTTATCCAATTAG
GCAGTGTGGACTGCAAAGAAATGATTCACTGGGTTTGCTAAGAATTTATATGCTCTTGTTCTGCTTCTTGTTTAGAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGG
TACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGA
AATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTC
TAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATT
GAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCC
CAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGAC
CAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACT
ACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAATGAATGCACAGAGAGTTGCAGCTGAGAA
AATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAG
CCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGC
AAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGA
AATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCC
CAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCC
Intron 4 GTCAGTCCCA ... AAAACTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.11 | 70 | 79 | 132 |
| A2 | 64.42 | 47.6 | 64.4 | 108 |
| A3 | 58.88 | 88 | 108 | 144 |
| A4 | 56.45 | 81 | 80 | 130 |
| A5 | 67.48 | 26 | 36.9 | 71 |
| A6 | 58.31 | 58.6 | 49.9 | 114 |
| A7 | 58.61 | 159.2 | 117.8 | 333 |
| A8 | 53.91 | 59 | 33 | 105 |
| A9 | 60.23 | 125 | 103.7 | 275 |
| A10 | 63.74 | 150.6 | 122.4 | 407 |
>TRINITY_DN115319_c1_g1_i7 from sample A1 / Example spliced isoformCAAAATTCCAAAATCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTG
TGGGCTTTGAACCGACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGC
CACTTCAAAAGTTTACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAA
GCAGATATATTTTCAAGAAATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGT
TCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTC
CCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCA
GAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTC
TGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAG
GTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCC
ATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGG
GCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCAC
AGAGAGTTGCAGCTGAG
>TRINITY_DN115319_c1_g1_i6 from sample A1 / Example unspliced isoform:CAAAATTCCAAAATCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTG
TGGGCTTTGAACCGACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGC
CACTTCAAAAGTTTACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAA
GCAGATATATTTTCAAGAAATACATCCTGTATATGTTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGT
TCAGgtcagtcccaatgttgataaattagatgttttagggctatagggatttgtgtttgctagatatagaattgatagatattctttcattcttttatccaattaggcagtgtggactgcaaagaaatgattcactgggtttgctaagaatttatatgctcttgttctgcttcttgtttagaagaagggtaagaattttt
tggggggtgagtgttgttgatggaaggatttggaatttttttgggggtgagtgctgttgatggaaggatttgggtgttgacaaaactccagTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGG
AATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAA
ACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGC
AAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAG
GGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCG
GCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGG
TCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTG
AAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAG
TTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAAT
GAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGA
TTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCAT
AAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAATATTTTTTTCTTAAAGCTCG
Intron 5 GCAGTGTGGA ... GGGGATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.77 | 35 | 52 | 147 |
| A2 | 80 | 28 | 18 | 112 |
| A3 | 81.56 | 33 | 38 | 146 |
| A4 | 82.61 | 28 | 37 | 133 |
| A5 | 85.06 | 13 | 20 | 74 |
| A6 | 79.62 | 32 | 24 | 125 |
| A7 | 80.71 | 82 | 55 | 343 |
| A8 | 75.84 | 36 | 21 | 113 |
| A9 | 83.54 | 54 | 55 | 274 |
| A10 | 81.89 | 94 | 68 | 425 |
>TRINITY_DN106955_c1_g1_i3 from sample A3 / Example spliced isoformCTGGGTTCTGTGTATGTTCAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTG
CTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTT
TCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCA
GTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATT
CAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTC
GCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAG
GGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATG
CACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGA
GCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGA
GAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAG
TGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATG
CAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
>TRINITY_DN106955_c1_g1_i2 from sample A3 / Example unspliced isoform:ATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGgcagtgtggactgc
aaagaaatgattcactgggtttgctaagaatttatatgctcttgttctgcttcttgtttagaagaagggtaagaattttttggggggtgagtgttgttgatggaaggatttggaatttttttgggggtgagtgctgttgatggaaggatttgggtgttgacaaaactccagttatggggatttagGTACTCAAAGAAATC
AGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGT
TCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCA
GAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATC
AAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATT
TGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTA
GGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCA
GATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTG
CATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATT
CCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGC
TACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTT
GATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAA
GCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
Intron 6 GTCAGTCCCA ... TCTTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.96 | 38 | 79 | 75 |
| A2 | 63.3 | 32 | 64.4 | 46 |
| A3 | 59.15 | 58 | 108 | 60 |
| A4 | 55.83 | 53 | 80 | 54 |
| A5 | 55.9 | 26 | 36.9 | 29 |
| A6 | 64.05 | 26.4 | 49.9 | 44 |
| A7 | 57.7 | 82 | 117.7 | 106 |
| A8 | 69.64 | 17 | 33 | 45 |
| A9 | 62.38 | 56 | 103.7 | 82 |
| A10 | 61.03 | 70.4 | 122.4 | 98 |
>TRINITY_DN106955_c1_g1_i4 from sample A3 / Example spliced isoformATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGAAGAAGGGTAAGAA
TTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCAT
TATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTC
AAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCA
GCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAG
GGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAG
TTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTT
CCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAG
TCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAA
ACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGG
CCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCG
GGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTT
CGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
>TRINITY_DN106955_c1_g1_i1 from sample A3 / Example unspliced isoform:ATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGgtcagtcccaatgt
tgataaattagatgttttagggctatagggatttgtgtttgctagatatagaattgatagatattctttcattcttttatccaattaggcagtgtggactgcaaagaaatgattcactgggtttgctaagaatttatatgctcttgttctgcttcttgtttagAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTT
GATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCC
AGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCC
CAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAAC
AGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGA
CCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAG
ACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTC
CCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTC
GCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCA
GAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAG
TCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATC
AACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCC
CATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
Intron 7 GTCAGTCCCA ... GGGGATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.07 | 57 | 79 | 147 |
| A2 | 69.44 | 39.3 | 64.3 | 112 |
| A3 | 68.58 | 60.3 | 108 | 146 |
| A4 | 68.03 | 52 | 80 | 133 |
| A5 | 69.28 | 25.7 | 36.9 | 74 |
| A6 | 63.41 | 52 | 49.9 | 125 |
| A7 | 67.08 | 114.7 | 117.7 | 343 |
| A8 | 61.89 | 45.3 | 33 | 113 |
| A9 | 69.36 | 85.3 | 103.8 | 274 |
| A10 | 68.08 | 130 | 122.3 | 425 |
>TRINITY_DN106955_c1_g1_i3 from sample A3 / Example spliced isoformCTGGGTTCTGTGTATGTTCAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTG
CTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTT
TCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCA
GTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATT
CAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTC
GCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAG
GGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATG
CACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGA
GCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGA
GAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAG
TGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATG
CAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
>TRINITY_DN106955_c1_g1_i1 from sample A3 / Example unspliced isoform:ATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGgtcagtcccaatgt
tgataaattagatgttttagggctatagggatttgtgtttgctagatatagaattgatagatattctttcattcttttatccaattaggcagtgtggactgcaaagaaatgattcactgggtttgctaagaatttatatgctcttgttctgcttcttgtttagaagaagggtaagaattttttggggggtgagtgttgtt
gatggaaggatttggaatttttttgggggtgagtgctgttgatggaaggatttgggtgttgacaaaactccagttatggggatttagGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCC
AGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCC
CAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAAC
AGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGA
CCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAG
ACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTC
CCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTC
GCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCA
GAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAG
TCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATC
AACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCC
CATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
Intron 8 GTCAGTCCCA ... TGTTTAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.86 | 36 | 79 | 73 |
| A2 | 64.8 | 30 | 64.4 | 46 |
| A3 | 59.27 | 56 | 108 | 55 |
| A4 | 55.71 | 54 | 79.9 | 56 |
| A5 | 56.62 | 26 | 36.9 | 31 |
| A6 | 65.24 | 25 | 49.9 | 44 |
| A7 | 57.93 | 79 | 117.6 | 100 |
| A8 | 69.37 | 17 | 33 | 44 |
| A9 | 63.8 | 53 | 103.9 | 83 |
| A10 | 60.58 | 72 | 122.3 | 99 |
>TRINITY_DN115319_c1_g1_i8 from sample A1 / Example spliced isoformCAAAATTCCAAAATCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTG
TGGGCTTTGAACCGACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGC
CACTTCAAAAGTTTACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAA
GCAGATATATTTTCAAGAAATACATCCTGTATATGTTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGT
TCAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATA
CCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTA
CAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCA
CTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCAC
TGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCA
GCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCT
CTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGG
GAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATA
AGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCA
GTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAA
ACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAG
TTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAATATTTTTTTCTTAAAGC
TCG
>TRINITY_DN115319_c1_g1_i9 from sample A1 / Example unspliced isoform:CAAAATTCCAAAATCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTG
TGGGCTTTGAACCGACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGC
CACTTCAAAAGTTTACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGCCTGTATATGTT
CCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGgtcagtcccaatgttgataaattagatgtttta
gggctatagggatttgtgtttgctagatatagaattgatagatattctttcattcttttatccaattaggcagtgtggactgcaaagaaatgattcactgggtttgctaagaatttatatgctcttgttctgcttcttgtttagaagAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATT
TTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGA
AAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGAC
AGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAG
AAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCC
TGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAG
GAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCT
TCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCA
TTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAG
AAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAA
GATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTG
ATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAA
ATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAATATTTTTTTCTTAAAGCTCG
Intron 9 GTCAGTCCCA ... ATCCAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.01 | 52 | 79 | 106 |
| A2 | 77.78 | 18 | 64 | 62 |
| A3 | 70.54 | 38 | 108 | 74 |
| A4 | 67.4 | 37 | 80 | 73 |
| A5 | 64.6 | 20 | 37 | 36 |
| A6 | 68.21 | 24 | 50 | 53 |
| A7 | 68.84 | 55 | 117 | 126 |
| A8 | 67.69 | 21 | 33 | 55 |
| A9 | 65.73 | 55 | 104 | 107 |
| A10 | 66.25 | 68 | 122 | 145 |
>TRINITY_DN106955_c1_g1_i2 from sample A3 / Example spliced isoformATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGGCAGTGTGGACTGC
AAAGAAATGATTCACTGGGTTTGCTAAGAATTTATATGCTCTTGTTCTGCTTCTTGTTTAGAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATC
AGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGT
TCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCA
GAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATC
AAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATT
TGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTA
GGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCA
GATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTG
CATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATT
CCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGC
TACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTT
GATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAA
GCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
>TRINITY_DN106955_c1_g1_i1 from sample A3 / Example unspliced isoform:ATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACCGACCG
TTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTTTACAT
TAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTTCAAGA
AATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGgtcagtcccaatgt
tgataaattagatgttttagggctatagggatttgtgtttgctagatatagaattgatagatattctttcattcttttatccaattagGCAGTGTGGACTGCAAAGAAATGATTCACTGGGTTTGCTAAGAATTTATATGCTCTTGTTCTGCTTCTTGTTTAGAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTT
GATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCC
AGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCC
CAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAAC
AGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGA
CCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAG
ACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTC
CCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTC
GCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAAGGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCA
GAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAG
TCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATC
AACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCC
CATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCCAA
Intron 10 GTACGTATAT ... TTGATAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.46 | 106 | 26 | 22 |
| A2 | 26.2 | 69 | 30 | 19 |
| A3 | 20 | 108 | 25 | 29 |
| A4 | 22.34 | 73 | 21 | 21 |
| A5 | 22.48 | 50 | 18 | 11 |
| A6 | 24.24 | 75 | 32 | 16 |
| A7 | 21.89 | 132 | 45 | 29 |
| A8 | 18.28 | 38 | 6 | 11 |
| A9 | 22.41 | 90 | 35 | 17 |
| A10 | 23.08 | 160 | 53 | 43 |
>TRINITY_DN98353_c1_g1_i2 from sample A4 / Example spliced isoformTCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACC
GACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTT
TACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTT
CAAGAAATACATCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTTATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGGTCAGTCCC
AATGTTGATAAATTAGATGTTTTAGGGCTATAGGGATTTGTGTTTGCTAGATATAGAATTGATAGATATTCTTTCATTCTTTTATCCAATTAGGCAGTGTGGACTGCAAAGAAATGATTCACTGGGTTTGCTAAGAATTTATATGCTCTTGTTCTGCTTCTTGTTTAGAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTG
TTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGGTACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGT
AGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGAAATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAA
GTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTCTAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCAT
AAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATTGAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGC
AAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCCCAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCC
AGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGACCAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCA
ATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACTACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCT
TTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAATGAATGCACAGAGAGTTGCAGCTGAGAAAATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTC
TTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAGCCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATA
TGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGCAAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAA
GGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGAAATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGA
AGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCCCAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCC
>TRINITY_DN98353_c1_g1_i4 from sample A4 / Example unspliced isoform:TCAACATTTATACCGAATTACAACCCTATACAGCCAAGGTGATGGCCCAAATTATGAAGAATCCCCGGCGCAATGGATCCAAGGTGATTGATCCAAATTATTAAAAAAACAATCCAGCAAGGAAAATAAGCAACACCAACAAAGCGATCCAGCAAGCCACTGAAAATCTGGATCCTTTCTGTCCTTGTGGGCTTTGAACC
GACCGTTAAAGATTAAATCTGAAGGGAACTGTTGAAATTTCAAATTCTCAAACAAAAATAGCCGTTGCTTGTGGGATTTCCATCTATGAGGCGGCCGCCATGGCCCATATGACACCATGAGCGCAAGCATAGAGGGAAAACGTAACGTCATTCCATGGCAAAATCTCTTTCCTGAAGAAAGTCAAGCCACTTCAAAAGTT
TACATTAAATAAAAAGAAGAGATGTCATGCTTTCCATCATTCCTCCCTCGCTTCTATTTTCATGGCGGAAAGTTTGCCAGGACCCCACACCATCATATGAAAAGTTATTCAACGAAAACAGGAGAAAATGCTTCGTTCCAACTTCCAGTCAAATAAAAAGAGAAGGATCGTCATGGTAAATTTGCAAGCAGATATATTTT
CAAGAAATACATgtacgtatatatatttatatatatccgtttcttttaaatagttacccaaagaggattgaaatattatcctgtgataatgtgatcgttatgtgatattttgataacagCCTGTATATGGTCCAGCCAAAGCCTGTATATGTTCCAGCGTGTTCCCTCTCAATCCATTTTGGTGGTATTTCATTTGGGTT
ATTCTGATTATTGAGGATTTCATTCTTTATGGAGAGAAACGATTGGGCTACAAGGGATTCTGGGCTTTTGTATCAAGCTGGGTTCTGTGTATGTTCAGGTCAGTCCCAATGTTGATAAATTAGATGTTTTAGGGCTATAGGGATTTGTGTTTGCTAGATATAGAATTGATAGATATTCTTTCATTCTTTTATCCAATTAG
GCAGTGTGGACTGCAAAGAAATGATTCACTGGGTTTGCTAAGAATTTATATGCTCTTGTTCTGCTTCTTGTTTAGAAGAAGGGTAAGAATTTTTTGGGGGGTGAGTGTTGTTGATGGAAGGATTTGGAATTTTTTTGGGGGTGAGTGCTGTTGATGGAAGGATTTGGGTGTTGACAAAACTCCAGTTATGGGGATTTAGG
TACTCAAAGAAATCAGAGACTTCATTGCAGAGTATGATTTGAGGGCTGATGTAGGGAATTTTATGTTGAAGATACCCTCTTATACTCATTATGGAATCCATTGAAGTAGCCCAGCAGAAGAAATCAGATGAAAATCCTGCAAGGCTTCCCCCAGGATTGGCTGATAAGAAAAGTGGTGCTCCCAAAAAGCGTGTGAGAGA
AATAACTTCCAGGTTCATGTCTGCATCCATTTCTTCTTCGTCTTCTTCTGTTTCTGGTGTTGCTTCCTCTGTTACAAAAAGCCAATCTCAAAAAACTACTCATACAAGTCCCCAACCTGGCCAGAGGAGACAGCCGTCTCCTCATCCTAGCAATAGATTTGATCCCAGAGCATCCGTTTCAGAGGCTCCCAGAAGGACTC
TAGGACCCAGTTCAGAGACACTCCGGAGTTTATCAGTTTCATTGCAGGATGAGAAATTCAACACTGAACATCCACTGAGGCCAACTGCAGCGGCAAACACTCTTCATAAAACAGGCCAAGGAGCACTGGAGAAGAAAGGGACTGTAGTGGCACCATTACCAGGGGAAAGTGGTGATCAGTCTGAGAATGCAAGGCCTATT
GAGAATCTGCAATCAAGGCCCAACACTGGGAAACCCCAAGGAAATCCTTTGATCAAGAGCGTGAATATTATCACTGAAAAGCCTGTTAGGGTAGGGCAAAGCCGGGCAAGGACCACTCCTAGACCTAATCCTGCTAGCAGACCTGTTTCTGGATGCTTGGGCGATGCTTTGATGGATTCAGGTGCTGCAAGACTAGCGCC
CAGCATAGAGAATTTGTCTTCTGAATGCGCTTCTCAGACAAGGGATGCAGCTGGGAGTAGTCAAGAAGGTGGCAGCCAAGGTAGTATAGTTCCGGCCAGATTCTGCCAGGAGACAAGTATCAGAGCCAGAGGAATAGTAGATGCCCGGTCTTTAATGCCAGAGGCTGAACTCTCATTCGCCATATCAACAAGAGTAAGAC
CAACAGGAGGCTTAGGGTCAGGGAGGTTATCAAGATCATCAGCATCCCCTTGGGCGGGTTCTACAAACCAATCTCTGCCTCCACCCTTTCCAGGTCCCCAACCATCAATGTCCCCTGTAAAAATAATCCCTTCATCATCTCCTCCATCCAGATGCCTACCAAGTCCAACAAGGCCCAGGGGGCATCCACTGCCACCAACT
ACAGCAACTTCTCAGATCATCCGCAGCAGTGGGGTAGGATCTCTGCTCAACTTTATTGCTGACGGGAGGAAGGGGAAGAAGGGGCCTAGTCCTGAAGATGTTCACCTTTTTCGCTTGCTTCATAACCGCCATTTGCAGTGGCGATTTGTTAATACTAAAGCAGAGGCTGTAATGAATGCACAGAGAGTTGCAGCTGAGAA
AATGCTATATAGTGCATGGATAAGAATTTCAGAACTGCAAGATTCGGTTATAATGAAGCGCATAGAGCTGCATAAGGCAATGCATGCAAACAAGTTGAGGTCTGTTCTTTCAGAACAAAAGGCTTATCTAGAAGACTGGGCGTTGCTGGAACAAGATCATTGCAGTACCATTTCAGGAGCCATTAAAGATTTAGAAGCAG
CCACTCTCCGAATTCCGATCACCGATGGAGTTAAGGCTGACATCCGAGAGGTGAAGGAAGCTCTAAATTCAGCAGTTAATGTAATAGGGCCAATGAGCTCCACTATATGCAGTCTGCTTCCCAAGGTTGAAGATATGAGCAATTTGGTCTTAGAGCTTGCAGCAGTAGCTGCACAAGAGAGAGGATTATTGGATGAATGC
AAAGATTTAATAGCTACAACCGGAGCATTAGAGGTTGAGGAATCTAGCTTGAGAACAAATCTGATTCAACTAAAACGAGAGAAATGTCGGGGGATTGGATGATGTAAGGATCAACGTTGTTGCTATTGTTGATTAGCTTGTACTATTAAATTCTCTACATTGGTGCTGCCTGATTGAGTGGTGGTTGATTGAGTGGTGGA
AATTGTTGGTGCTTGATTGAGTGTAATACCAATTCTTGTTTGATATAATGATATATTGTAGAATAGCTTATTAGTTATGAGCATTGTTTCGCATAAATGCATGTTGAAGTCCCATTGATTTGTTAAAAAAAATAATAGTGGAGCACTGGAGGCTAGAGATGAAGCCTAGGTGACTATGCAGGAATGTATCCTCTTTATCC
CAAGGGCTTTTAAAGCCCAAATTTACACTGTTTTAATTGAAATGTTCCATTTCCC