sp|Q1G3Q4|RITF1_ARATH ----> Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
Intron 1 GTTTTTCGTT ... AGTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.85 | 39.3 | 23.3 | 29.4 |
| A2 | 32.56 | 69.2 | 24 | 43.2 |
| A3 | 35.38 | 58 | 25.3 | 38 |
| A4 | 33.77 | 41.2 | 11.3 | 30.5 |
| A5 | 21.68 | 39.9 | 11 | 11.3 |
| A6 | 23.97 | 135 | 40.6 | 45.8 |
| A7 | 35.6 | 166.1 | 109.6 | 74.1 |
| A8 | 34.07 | 126.6 | 73.6 | 57.1 |
| A9 | 28.71 | 253.5 | 140.6 | 64.6 |
| A10 | 24.7 | 192.9 | 70 | 57.2 |
>TRINITY_DN116192_c0_g1_i5 from sample A1 / Example spliced isoformCACGCATGTAGTTAGAGATTGAACGGAAATTAAGGTTTCTCGATGATCGTGCAAGCGAGACGACAGAAGGGATCAAATCCATGCAGAGAGAGGAGGCAATGAGGACAGAATACGAAGGCAAATCAAGCCAACCAAAATTAGGTTGGCAGGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCA
GCATCAGCAGATATTATTGACAGCACCAGCAATAGCACTGTAAACATGGTCGGTTACGCATTGCAACACCAGAAGCCAGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGGATTCATGACACTGCAAGAAAGAACGAGAAGAATATATACTGTTTGGATTGCTGCAAGAGTATATGCCCTCATTG
TTTACCAGCACATCTCACACACCGCTTACTGCAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCGGCCTTTCAAAGGATCTGGAAACATGTGCGGAACTT
GTGAAAGAATCTTGCAGGAACCTTACTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATGGAGATTTGGATGATGGGCAGATGACACCCAATTCA
ATTTTTGACAACCCAATGTCTTCTGGATCCAGTGCTAGTGGCACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGAAAGGGCACTCCTCAAAGGTCTCCTCTTTATTAGTA
GCCTTTTCGCTTTCTTCATTGAATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTTCGGCAAATCAGATGCACAAACAAAGCAAAGGATGAGAAATTCCTTAGATAATATGTCTACCATGACTTCATCTGCCATGGTTTTTGGTGATAATTATATTGTCTCGACCATATAGAGAAGGGAAATTTGCAGGTCT
GCTCTGGTTGGGCCCATTCCCTTGCATTATCAAAACTCATTCAGAGGACAGGATACTTATTCTGCTGGGAGTATAGTTTGCAGCTTGCAAGCCCTCGGGCAAAGGACATGTTGTTTTGAGGCTTGCAATTTTGAATGCAATTATGTTAGTGTGCAATGGGAAGAAGGTCAAAGTTGTATGGACAGTCAAAAAGATAAGGC
ATGTGTATGCCAATACTTGTAACAGAAATACTTTATTGTTTCTTGCTTAATTTATGGAGATATCATTATCTTTGCTTACCATTTTGAAATTTTGTTGATACTTTCCATTTCTTAGACGGTAGAGTAAAC
>TRINITY_DN116192_c0_g1_i4 from sample A1 / Example unspliced isoform:CACGCATGTAGTTAGAGATTGAACGGAAATTAAGGTTTCTCGATGATCGTGCAAGCGAGACGACAGAAGGGATCAAATCCATGCAGAGAGAGGAGGCAATGAGGACAGAATACGAAGGCAAATCAAGCCAACCAAAATTAGGgtttttcgttctcgcctttctttatgttttctttaatttgaaaaaaaagataaataca
agttgaattgaatgcatttgaacgaagaggcaagatgatgtttacaaacaataagtacagtagagaaggcttgtggacattgtttcccgcctcattgtgagcatctaagagagttgttcagTTGGCAGGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCAGCATCAGCAGATATTATTGAC
AGCACCAGCAATAGCACTGTAAACATGGTCGGTTACGCATTGCAACACCAGAAGCCAGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGGATTCATGACACTGCAAGAAAGAACGAGAAGAATATATACTGTTTGGATTGCTGCAAGAGTATATGCCCTCATTGTTTACCAGCACATCTCACACA
CCGCTTACTGCAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCGGCCTTTCAAAGGATCTGGAAACATGTGCGGAACTTGTGAAAGAATCTTGCAGGAAC
CTTACTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATGGAGATTTGGATGATGGGCAGATGACACCCAATTCAATTTTTGACAACCCAATGTCT
TCTGGATCCAGTGCTAGTGGCACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGAAAGGGCACTCCTCAAAGGTCTCCTCTTTATTAGTAGCCTTTTCGCTTTCTTCATTG
AATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTTCGGCAAATCAGATGCACAAACAAAGCAAAGGATGAGAAATTCCTTAGATAATATGTCTACCATGACTTCATCTGCCATGGTTTTTGGTGATAATTATATTGTCTCGACCATATAGAGAAGGGAAATTTGCAGGTCTGCTCTGGTTGGGCCCATTCCC
TTGCATTATCAAAACTCATTCAGAGGACAGGATACTTATTCTGCTGGGAGTATAGTTTGCAGCTTGCAAGCCCTCGGGCAAAGGACATGTTGTTTTGAGGCTTGCAATTTTGAATGCAATTATGTTAGTGTGCAATGGGAAGAAGGTCAAAGTTGTATGGACAGTCAAAAAGATAAGGCATGTGTATGCCAATACTTGTA
ACAGAAATACTTTATTGTTTCTTGCTTAATTTATGGAGATATCATTATCTTTGCTTACCATTTTGAAATTTTGTTGATACTTTCCATTTCTTAGACGGTAGAGTAAAC
Intron 2 GTTAGTAAAG ... TAAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.5 | 42 | 0 | 6 |
| A2 | 22.58 | 24 | 0 | 7 |
| A3 | 21.95 | 32 | 0 | 9 |
| A4 | 21.05 | 30 | 0 | 8 |
| A5 | 25 | 30 | 1 | 10 |
| A6 | 22.69 | 92 | 0 | 27 |
| A7 | 21.9 | 107 | 0 | 30 |
| A8 | 17.39 | 95 | 1 | 20 |
| A9 | 12.31 | 114 | 0 | 16 |
| A10 | 16.67 | 90 | 0 | 18 |
>TRINITY_DN40686_c0_g1_i3 from sample A6 / Example spliced isoformTCACTCAAAATAAAAAAAACATGAGAAGAATATGCTATAAATGCATTGATGCAACAGGTTTAGGATCCTACCCGTTCAAGCTTGATCTGGTTTGAGGGGAATGATGCATCTCAGTTTTGCCAAGGATTTTGAAGTCCTTGTAGCCAACAGGTTGAATTTTGGTTCTTTGTTGAAGGGAAGCATGTCTTGCAGTCATGCAA
GGCACAATAGGGTCCTTAGACTGGGGGTTTCAGACTTTCCTTTCAATATTTGATCTCTGTTAATTCTCGCAACATTTTGAAGGGAAGCAAATTTATTATTGAACCGTTTCTGTCAAAATTCGATCCATGTTTAATTTAAGGAGCAATTTGAAGATAATTTTGCAAATAATGTCCTAAAATCTACTCGTCAAAAGTTGATT
ATTTATTTGAATCCAACTTTGTTTAGAGTCATGTTGTTTCTATCAAGTGAACCTATTTAATTTCTGAAAGGTGTGTGAATGTTTGATGACCTACTTATTTATTTAGAAAAGTGCTTTTGGTTAGTGTGTACATTAAGTTATTACTAATATGGCTGATGCTCCAACAGATTAGGAATTTGGTTAGCAACTTAGTTTTACTG
TGTTTTCTAAAACAATCATCTTATTGTTTTTCTTGTGGGAATTTTCTGCAATAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCGGCCTTTCAAAGGATC
TGGAAACATGTGCGGAACTTGTGAAAGAATCTTGCAGGAACCTTACTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATGGAGATTTGGATGATG
GGCAGATGACACCCAATTCAATTTTTGACAACCCAATGTCTTCTGGATCCAGTGCTAGTGGTACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGAAAGGGCACTCCTCAA
AGGTCTCCTCTTTATTAGTAGCCTTTTCGCTTTCTTCATTGAATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTTCGGCAAATCAGATGCACAAACAAAACAAAGGATGAGAAATTCCTTAGATAATATGTCTACCATGACTTCATCTGCCATGGTTTTTGGTGATAATTATATTGTCTCGACCATATAGA
GAAGGGAAATTTGCAGGTCTGCTCTGGTTGGGCCCATTCCCTTGCATTCTCAAAACTCATTCAGAGGACAGGATACTTATTCTGCTGGGAGTATAGTTTGCAGCTTGCAAGCCCTCGGGCAAAGGACATGTTGTTTTGAGGCTTGCAATTTTGAATGCAATTATGTTAGTGTGCAATGGGAAGAAGGTCAAAGTTGTATG
GACAGTCAAAAAGATAAGGCATGTGTATGCCAATACTTGTAACAGAAATACTTTATTGTTTCTTGCTTAATTTATGGAGATATCATTATCTTTGCTTACCAA
>TRINITY_DN40686_c0_g1_i2 from sample A6 / Example unspliced isoform:TATTGCTCTCTAGCTTGCAAGgttagtaaagttcctcatctttcagtttcattctcttgtaaattttggggcgcagccattctactgattttcacttaactttgctagttccatttgggctagcacttagaaactggaattgattttcatcatctttttgttatcccaagattaaaattagatggtattataaattgcag
GTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATGGAGATTTGGATGATGGGCAGATGACACCCAATTCAATTTTTGACAACCCAATGTCTTCTGGATCCAGTGCTAGTGGTACAGTGGG
TTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGAAAGGGCACTCCTCAAAGGTCTCCTCTTTATTAGTAGCCTTTTCGCTTTCTTCATTGAATGTAATGGTTTCTTCTGTGTACGTTTT
TTTCACTTTTTTTTCGGCAAATCAGATGCACAAACAAAACAAAGGATGAGAAATTCCTTAGATAATATGTCTACCATGACTTCATCTGCCATGGTTTTTGGTGATAATTATATTGTCTCGACCATATAGAGAAGGGAAATTTGCAGGTCTGCTCTGGTTGGGCCCATTCCCTTGCATTCTCAAAACTCATTCAGAGGACA
GGATACTTATTCTGCTGGGAGTATAGTTTGCAGCTTGCAAGCCCTCGGGCAAAGGACATGTTGTTTTGAGGCTTGCAATTTTGAATGCAATTATGTTAGTGTGCAATGGGAAGAAGGTCAAAGTTGTATGGACAGTCAAAAAGATAAGGCATGTGTATGCCAATACTTGTAACAGAAATACTTTATTGTTTCTTGCTTAA
TTTATGGAGATATCATTATCTTTGCTTACCAA
Intron 3 GTGTGTAAGT ... TGGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.41 | 66 | 14.4 | 19 |
| A2 | 21.28 | 88.9 | 23 | 24 |
| A3 | 13 | 60.5 | 16.8 | 9 |
| A4 | 30.88 | 45.9 | 16.4 | 20.4 |
| A5 | 52.88 | 19.1 | 8.4 | 21.4 |
| A6 | 17.41 | 135.8 | 27.4 | 28.6 |
| A7 | 16.53 | 180.9 | 48.7 | 35.7 |
| A8 | 15.97 | 132.2 | 29.2 | 25 |
| A9 | 16.96 | 212 | 44.5 | 43 |
| A10 | 14.35 | 174.3 | 37.7 | 29 |
>TRINITY_DN116192_c0_g1_i4 from sample A1 / Example spliced isoformCACGCATGTAGTTAGAGATTGAACGGAAATTAAGGTTTCTCGATGATCGTGCAAGCGAGACGACAGAAGGGATCAAATCCATGCAGAGAGAGGAGGCAATGAGGACAGAATACGAAGGCAAATCAAGCCAACCAAAATTAGGGTTTTTCGTTCTCGCCTTTCTTTATGTTTTCTTTAATTTGAAAAAAAAGATAAATACA
AGTTGAATTGAATGCATTTGAACGAAGAGGCAAGATGATGTTTACAAACAATAAGTACAGTAGAGAAGGCTTGTGGACATTGTTTCCCGCCTCATTGTGAGCATCTAAGAGAGTTGTTCAGTTGGCAGGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCAGCATCAGCAGATATTATTGAC
AGCACCAGCAATAGCACTGTAAACATGGTCGGTTACGCATTGCAACACCAGAAGCCAGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGGATTCATGACACTGCAAGAAAGAACGAGAAGAATATATACTGTTTGGATTGCTGCAAGAGTATATGCCCTCATTGTTTACCAGCACATCTCACACA
CCGCTTACTGCAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCGGCCTTTCAAAGGATCTGGAAACATGTGCGGAACTTGTGAAAGAATCTTGCAGGAAC
CTTACTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATGGAGATTTGGATGATGGGCAGATGACACCCAATTCAATTTTTGACAACCCAATGTCT
TCTGGATCCAGTGCTAGTGGCACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGAAAGGGCACTCCTCAAAGGTCTCCTCTTTATTAGTAGCCTTTTCGCTTTCTTCATTG
AATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTTCGGCAAATCAGATGCACAAACAAAGCAAAGGATGAGAAATTCCTTAGATAATATGTCTACCATGACTTCATCTGCCATGGTTTTTGGTGATAATTATATTGTCTCGACCATATAGAGAAGGGAAATTTGCAGGTCTGCTCTGGTTGGGCCCATTCCC
TTGCATTATCAAAACTCATTCAGAGGACAGGATACTTATTCTGCTGGGAGTATAGTTTGCAGCTTGCAAGCCCTCGGGCAAAGGACATGTTGTTTTGAGGCTTGCAATTTTGAATGCAATTATGTTAGTGTGCAATGGGAAGAAGGTCAAAGTTGTATGGACAGTCAAAAAGATAAGGCATGTGTATGCCAATACTTGTA
ACAGAAATACTTTATTGTTTCTTGCTTAATTTATGGAGATATCATTATCTTTGCTTACCATTTTGAAATTTTGTTGATACTTTCCATTTCTTAGACGGTAGAGTAAAC
>TRINITY_DN116192_c0_g1_i6 from sample A1 / Example unspliced isoform:TTGGCAGGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCAGCATCAGCAGATATTATTGACAGCACCAGCAATAGCACTGTAAACATGgtgtgtaagtgtgtgggggttacctatgtttgtgtgttgggtgtgtcaactctctttcactacttgctatccatttgagtacggcctgaagtct
ttgaatgtgtgtctgtcagtttgttgcagatgggtcctgcttgctacctttggatctgtgtttttaatttttctttctgtaccttttgtaatttaacctttcggggagactagggtggggatggttccagttgaattataacaacacacccaattgctttttgatgtgtgtggaattgagactggattggaattttaggg
agaggattgaaattgtaggaagaggatgggtgaaagtggccatgagtgtgatgagattgatggtggtttgcagGTCGGTTACGCATTGCAACACCAGAAGCCAGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGTACTCATGACACTGCAAGAAAGAACGAGAAGAATATATACTGTTTGGATT
GCTGCAAGAGTATATGCCCTCATTGTTTACCAGCACATCTCACACACCGCTTACTGCAGGTAACTAACCAATCTTTTATAATCTTTAATTTTCTAATTTTGGTCTTTGGTTTAAAGGAGGCTTCCATTTTGAACTTTCAGTAATCTTTAATTTTCTACTTGTGGTCTTTGGTTTAAGGAGGTTTCCATCCCCAACTTTAA
TTTGGTTTTTTTCTTGTCTATTATACATGTTACAGAATTTCAGCGTTGGTAGCATTTTTGGGGG
Intron 4 GTGAGTTAGT ... TTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.83 | 45 | 18 | 21 |
| A2 | 17.31 | 33.5 | 3 | 11 |
| A3 | 25.73 | 35.8 | 15 | 9 |
| A4 | 22.66 | 28 | 10 | 6 |
| A5 | 19.62 | 16.5 | 4 | 4 |
| A6 | 26.27 | 76 | 27 | 26 |
| A7 | 27.15 | 94.8 | 42 | 26 |
| A8 | 27.79 | 106.5 | 28 | 53 |
| A9 | 24.77 | 109.5 | 31 | 40 |
| A10 | 24.77 | 91 | 26 | 33 |
>TRINITY_DN38917_c0_g1_i3 from sample A9 / Example spliced isoformAACCTCACAACAAACCCAAACTTAACCTCCTCTAATTATTTAAAAATCCTAATAAATACTAATTTTGAAAAGAAAAAGATTCAAACCCACACGCATGTAGTTAGAGATTGAACGGAAATTAAGGTTTCTCGATGATCGTGCAAGCGAGACGACAGAAGGGATCAAATCCATGCAGAGAGAGGAGGCAATGAGGACAGAAT
ACGAAGGCAAATCAAGCCAACCAAAATTAGGGTTTTTCGTTCTCGCCTTTCTTTATGTTTTCTTTAATTTGAAAAAAAAGATAAATACAAGTTGAATTGAATGCATTTGAACGAAGAGGCAAGATGATGTTTACAAACAATAAGTACAGTAGAGAAGGCTTGTGGGCGTTGTTTCCCGCCTCATTGTGAGCATCTAAGAG
AGTTGTTCAGTTGGCAGGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCAGCATCAGCAGATATTATTGACAGCACCAGCAATAGCACTGTAAACATGGTGTGTAAGTGTGTGGGGGTTACCTATGTTTGTGTGTTGGGTGTGTCAACTCTCTTTCACTACTTGCTATCCATTTGAGTACGG
CCTGAAGTCTTTGAATGTGTGTCTGTCAGTTTGTTGCAGATGGGTCCTGCTTGCTACCTTTGGATCTGTGTTTTTAATTTTTCTTTCTGTACCTTTTGTAATTTAACCTTTCGGGGAGACTAGGGTGGGGATGGTTCCAGTTGAATTATAACAACACACCCAATTGCTTTTTGATGTGTGTGGAATTGAGACTGGATTGG
AATTTTAGGGAGAGGATTGAAATTGTAGGAAGAGGATGGGTGAAAGTGGCCATGAGTGTGATGAGATTGATGGTGGTTTGCAGGTCGGTTACGCATTGCAACACCAGAAGCCAGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGTACTCATGACACTGCAAGAAAGAACGAGAAGAATATATAC
TGTTTGGATTGCTGCAAGAGTATATGCCCTCATTGTTTACCAGCACATCTCACACACCGCTTACTGCAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCG
GCCTTTCAAAGGATCTGGAAACATGTGCGGAACTTGTGAAAGAATCTTGCAGGAACCTTATTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATG
GAGATTTGGATGATGGGCAGATGACACCCAATTCAATTTTTGACAACCCAATGTCTTCTGGATCCAGTGCTAGTGGCACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGA
AAGGGCACTCCTCAAAGGTCTCCTCTTTATTAGTAGCCTTTTCGCTTTCTTCATTGAATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTTCGGCAAATCAGATGCACAAACAAAACAAAGGATGAGAAATTCCTTAGATAATATGTCTACCATGACTTCATCTGCCATGGTTTTTGGTGATAATTATATTG
TCTCGACCATATAGAGAAGGGAAATTTGCAGGTCTGCTCTGGTTGGGCCCATTCCCTTGCATTATCAAAACTCATTCAGAGGACAGGATACTTATTCTGCTGGGAGTATAGTTTGCAGCTTGCAAGCCCTCGGGCAAAGGACATGTTGTTTTGAGGCTTGCAATTTTGAATGCAATTATGTTAGTGTGCAATGGGAAGAA
GGTCAAAGTTGTATGGACAGTCAAAAAGATAAGGCATGTGTATGCCAATACTTGTAACAGAAATACTTTATTGTTTCTTGCTTAATTTATGGAGATATCATTATCTTTGCTTACCAAAA
>TRINITY_DN38917_c0_g1_i6 from sample A9 / Example unspliced isoform:AACCTCACAACAAACCCAAACTTAACCTCCTCTAATTATTTAAAAATCCTAATAAATACTAATTTTGAAAAGAAAAAGATTCAAACCCACACGCATGTAGTTAGAGATTGAACGGAAATTAAGGTTTCTCGATGATCGTGCAAGCGAGACGACAGAAGGGATCAAATCCATGCAGAGAGAGGAGGCAATGAGGACAGAAT
ACGAAGGCAAATCAAGCCAACCAAAATTAGGGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCAGCATCAGCAGATATTATTGACAGCACCAGCAATAGCACTGTAAACATGGTGTGTAAGTGTGTGGGGGTTACCTATGTTTGTGTGTTGGGTGTGTCAACTCTCTTTCACTACTTGCTAT
CCATTTGAGTACGGCCTGAAGTCTTTGAATGTGTGTCTGTCAGTTTGTTGCAGATGGGTCCTGCTTGCTACCTTTGGATCTGTGTTTTTAATTTTTCTTTCTGTACCTTTTGTAATTTAACCTTTCGGGGAGACTAGGGTGGGGATGGTTCCAGTTGAATTATAACAACACACCCAATTGCTTTTTGATGTGTGTGGAAT
TGAGACTGGATTGGAATTTTAGGGAGAGGATTGAAATTGTAGGAAGAGGATGGGTGAAAGTGGCCATGAGTGTGATGAGATTGATGGTGGTTTGCAGGTCGGTTACGCATTGCAACACCAGAAGCCAGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGGATTCATGACACTGCAAGAAAGAACG
AGAAGAATATATACTGTTTGGATTGCTGCAAGAGTATATGCCCTCATTGTTTACCAGCACATCTCACACACCGCTTACTGCAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGgtgagttagtacttttgctgcaaggctagactcttcctcatt
ttattgttagaaattatttgaattttgcaataggaaatgtcatgagaagaaaactccttaaattagaaaattattcaaaattctcttcattagtttgagaagcaacaaaattcctgattcatgtcacttaacgcctttttttcagTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTC
GGCCTTTCAAAGGATCTGGAAACATGTGCGGAACTTGTGAAAGAATCTTGCAGGAACCTTATTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAAT
GGAGATTTGGATGATGGGCAGATGACACCCAATTCAATTTTTGACAACCCAATGTCTTCTGGATCCAGTGCTAGTGGCACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAG
AAAGGGCACTCCTCAAAGGTCTCCTCTTTATTAGTAGCCTTTTCGCTTTCTTCATTGAATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTTCGGCAAATCAGATGCACAAACAAAACAAAGGATGAGAAATTCCTTAGATAATATGTCTACCATGACTTCATCTGCCATGGTTTTTGGTGATAATTATATT
GTCTCGACCATATAGAGAAGGGAAATTTGCAGGTCTGCTCTGGTTGGGCCCATTCCCTTGCATTATCAAAACTCATTCAGAGGACAGGATACTTATTCTGCTGGGAGTATAGTTTGCAGCTTGCAAGCCCTCGGGCAAAGGACATGTTGTTTTGAGGCTTGCAATTTTGAATGCAATTATGTTAGTGTGCAATGGGAAGA
AGGTCAAAGTTGTATGGACAGTCAAAAAGATAAGGCATGTGTATGCCAATACTTGTAACAGAAATACTTTATTGTTTCTTGCTTAATTTATGGAGATATCATTATCTTTGCTTACCAAAA
Intron 5 GTTGAATTTT ... TCTGCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.67 | 12 | 5 | 16 |
| A2 | 38.46 | 12 | 3 | 12 |
| A3 | 64.29 | 5 | 3 | 15 |
| A4 | 45.45 | 6 | 4 | 6 |
| A5 | 47.83 | 6 | 5 | 6 |
| A6 | 51.52 | 16 | 13 | 21 |
| A7 | 42.42 | 19 | 9 | 19 |
| A8 | 43.75 | 18 | 7 | 21 |
| A9 | 33.33 | 27 | 2 | 25 |
| A10 | 35.59 | 19 | 3 | 18 |
>TRINITY_DN38917_c0_g1_i2 from sample A9 / Example spliced isoformCTAGATTGACCGTTTTTTTCCGAAGAGTGATTTCATTCATGCATTTTGTTTCAGGGTATGCTCTACTGTTTTGTGGGGTTGTTGGTCTCTAATCCTGGACACCAAAGTGCAAGAATCAGAAATTTACTTCCCTGGGCTTCAACCTTCAGCTTACTGGTTCAATTCTAGCAGAATTGTGTTTGAAGTTTGCAGATGGTTAT
AATGCCCCTCAGAGTCTCTTGTCTGTTTCCGTGGTTATAATGTCCCTAGAGTCTCTCTGTTCTATTTCTATCCATAAGACCATGATGATGGAAAATTCGTAAGTGTCCAGCGCGGACTTCTCAAGCCAAACTGAGAACATGGGTTTCCAATAAGCATGGAGTAGCTTATGTTTCCTGAGCTTTCTTCACTCAAAATAAAA
AAAACATGAGAAGAATATGCTATAAATGCATTGATGCAACAGGTTTAGGATCCTACCCGTTCAAGCTTGATCTGGTTTGAGGGGAATGATGCATCTCAGTTTTGCCAAGGATTTTGAAGTCCTTGTAGCCAACAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTC
ATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCGGCCTTTCAAAGGATCTGGAAACATGTGCGGAACTTGTGAAAGAATCTTGCAGGAACCTTATTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATA
AATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATGGAGATTTGGATGATGGGCAGATGACACCCAATTCAATTTTTGACAACCCAATGTCTTCTGGATCCAGTGCTAGTGGCACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAG
AGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGAAAGGGCACTCCTCAAAGGTCTCCTCTTTATTAGTAGCCTTTTCGCTTTCTTCATTGAATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTT
>TRINITY_DN38917_c0_g1_i8 from sample A9 / Example unspliced isoform:CTAGATTGACCGTTTTTTTCCGAAGAGTGATTTCATTCATGCATTTTGTTTCAGGGTATGCTCTACTGTTTTGTGGGGTTGTTGGTCTCTAATCCTGGACACCAAAGTGCAAGAATCAGAAATTTACTTCCCTGGGCTTCAACCTTCAGCTTACTGGTTCAATTCTAGCAGAATTGTGTTTGAAGTTTGCAGATGGTTAT
AATGCCCCTCAGAGTCTCTTGTCTGTTTCCGTGGTTATAATGTCCCTAGAGTCTCTCTGTTCTATTTCTATCCATAAGACCATGATGATGGAAAATTCGTAAGTGTCCAGCGCGGACTTCTCAAGCCAAACTGAGAACATGGGTTTCCAATAAGCATGGAGTAGCTTATGTTTCCTGAGCTTTCTTCACTCAAAATAAAA
AAAACATGAGAAGAATATGCTATAAATGCATTGATGCAACAGGTTTAGGATCCTACCCGTTCAAGCTTGATCTGGTTTGAGGGGAATGATGCATCTCAGTTTTGCCAAGGATTTTGAAGTCCTTGTAGCCAACAGgttgaattttggttctttgttgaagggaagcatgtcttgcagtcatgcaaggcacaatagggtcc
ttagactgggggtttcagactttcctttcaatatttgatctctgttaattctcgcaacattttgaagggaagcaaatttattattgaaccgtttctgtcaaaattcgatccatgtttaatttaggagcaatttgaagataattttgcaaataatgtcctaaaatctactcgtcaaaagttgattatttatttgaatccaa
ctttgtttagagtcatgttgtttctatcaagtgaacctatttaatttctgaaaggtgtgtgaatgtttgatgacctacttatttatttagaaaagtgcttttggttagtgtgtacattaagttattactaatatggctgatgctccaacagattaggaatttggttagcaacttagttttactgtgttttctaaaacaat
catcttattgtttttcttgtgggaattttctgcaatagGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCGGCCTTTCAAAGGATCTGGAAACATGTGCGGA
ACTTGTGAAAGAATCTTGCAGGAACCTTATTGTTATTGCTCTCTAGCTTGCAAGGTGGATCATATAGTGAATCAAGGGAAAGATCTCTCTCGGTATTTACATAAATGTGAAACCTTACCACTCTCTGATTTTGTATTCACTCAACTTGAAAGCTTGAAGAGTGATAATGGAGATTTGGATGATGGGCAGATGACACCCAA
TTCAATTTTTGACAACCCAATGTCTTCTGGATCCAGTGCTAGTGGCACAGTGGGTTGCAAGACCTTGGCTTGCACCGCTACCACAGATTATGTTAAGAAAAAGAGAAGTGGGCAAATTAGTCAAGACTTCCCACCAACCACAGAGGTGGTTGCATCTCTTAGCAGGAGAAAGGGCACTCCTCAAAGGTCTCCTCTTTATT
AGTAGCCTTTTCGCTTTCTTCATTGAATGTAATGGTTTCTTCTGTGTACGTTTTTTTCACTTTTTTTT
Intron 6 GTTTTTCGTT ... CAGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.54 | 48.8 | 23.5 | 29.2 |
| A2 | 30.15 | 78 | 24 | 44.3 |
| A3 | 32.03 | 67.8 | 25.5 | 39 |
| A4 | 29.02 | 49.3 | 11.5 | 29 |
| A5 | 21.47 | 41 | 11 | 11.6 |
| A6 | 21.95 | 158.3 | 40.9 | 50.3 |
| A7 | 31.75 | 198 | 109.9 | 76.2 |
| A8 | 30.78 | 148.7 | 73.9 | 59.4 |
| A9 | 26.43 | 286.4 | 141.3 | 66.7 |
| A10 | 23.35 | 225.8 | 70.4 | 68.4 |
>TRINITY_DN110681_c0_g1_i6 from sample A2 / Example spliced isoformCGGAAATTAAGGTTTCTCGATGATCGTGCAAGCGAGACGACAGAAGGGATCAAATCCATGCAGAGAGAGGAGGCAATGAGGACAGAATACGAAGGCAAATCAAGCCAACCAAAATTAGGGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCAGCATCAGCAGATATTATTGACAGCACCAGC
AATAGCACTGTAAACATGGTCGGTTACGCATTGCAACACCAGAAGCCAGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGTACTCATGACACTGCAAGAAAGAACGAGAAGAATATATACTGTTTGGATTGCTGCAAGAGTATATGCCCTCATTGTTTACCAGCACATCTCACACACCGCTTACT
GCAGGTTCGACGTTATGTTTATCATGATGTTATCAGGCTTGATGATCTGGTGAAATTGATAGATTGCTCATATGTTCAGTCATACACCATCAACAGTGCGAAAGTGGTTTTCCTAAATCAGAGGCCACAGTCTCGGCCTTTCAAAGGATCTGGAAACATGTGCGGAACTTGTGAAAGAATCTTGCAGGAACCTTACTGTT
ATTGCTCTCTAGCTTGCAAGGTTAGTAAAGTTCCTCATCTTTCAGTTTCATTCTCTAGTAAATTTTGGGGCACAG
>TRINITY_DN110681_c0_g1_i3 from sample A2 / Example unspliced isoform:CGGAAATTAAGGTTTCTCGATGATCGTGCAAGCGAGACGACAGAAGGGATCAAATCCATGCAGAGAGAGGAGGCAATGAGGACAGAATACGAAGGCAAATCAAGCCAACCAAAATTAGGgtttttcgttctcgcctttctttatgttttctttaatttgaaaaaaaagataaatacaagttgaattgaatgcatttgaac
gaagaggcaagatgatgtttacaaacaataagtacagtagagaaggcttgtgggcgttgtttcccgcctcattgtgagcatctaagagagttgttcagttggcagGCAGTGGTAGCAGTAGCAGCAGGAGCAACAGGAACAGGATCAGCAGGATCAGCATCAGCAGATATTATTGACAGCACCAGCAATAGCACTGTAAA
CATGGTGTGTAAGTGTGTGGGGGTTACCTATGTTTGTGTGTTGGGTGTGTCAACTCTCTTTCACTACTTGCTATCCATTTGAGTACGGCCTGAAGTCTTTGAATGTGTGTCTGTCAGTTTGTTGCAGATGGGTCCTGCTTGCTACCTTTGGATCTGTGTTTTTAATTTTTCTTTCTGTACCTTTTGTAATTTAACCTTTC
GGGGAGACTAGGGTGGGGGTGGTTCCAGTTGAATTATAACAACACACCCAATTGCTTTTTGATGTGTGTGGAATTGAGACTGGATTGGAATTTTAGGGAGAGGATTGAAATTGTAGGAAGAGGATGGGTGAAAGTGGCCATGAGTGTGATGAGATTGATGGTGGTTTGCAGGTCGGTTACGCATTGCAACACCAGAAGCC
AGCATGGATGGAGGGACTGCTGAGTGAGAAATTCTTTGTTGGGTGTGGGATTCATGACACTGCAAGAAAGAACGAGAAGAATATATACTGTTTGGATTGCTGCAAGAGTATATGCCCTCATTGTTTACCAGCACATCTCACACACCGCTTACTGCAGGTAACTAACCAATCTTTTATAATCTTTAATTTTCTAATTTTGG
TCTTTGGTTTAAAGGAGGCTTCCATTTTGAACTTTCAGTAATCTTTAATTTTCTACTTGTGGTCTTTGGTTTAAGGAGGC