sp|J9QS23|TPS9_SELML ----> Copalyl diphosphate synthase 1
Intron 1 GTATGGAATA ... ATATTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.82 | 43 | 13 | 11 |
| A2 | 20.33 | 49 | 6 | 19 |
| A3 | 16.92 | 27 | 5 | 6 |
| A4 | 18.18 | 27 | 3 | 9 |
| A5 | 28.57 | 15 | 7 | 5 |
| A6 | 23.36 | 105 | 25 | 39 |
| A7 | 21.68 | 177 | 38 | 60 |
| A8 | 22.16 | 209 | 38 | 81 |
| A9 | 21.48 | 170 | 41 | 52 |
| A10 | 20.68 | 140 | 25 | 48 |
>TRINITY_DN116329_c0_g1_i15 from sample A2 / Example spliced isoformATCCACCCCAAGTACGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATTTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTG
CAAGCAGGTTGTATCATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATC
ATGGAAGAAGAACTTGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTT
GATTATTAAGGACCGTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCT
TGGAACTCCCTTATGATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCT
GCAACTGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGT
CTACAGATACTGGACACAGAAAGAAACAAACGTAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCAT
CACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGAT
CAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATA
TTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGC
AAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATT
GCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTC
AGGAACAACTGTGGAGGATGCCATTGTCTATTTGAGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATG
TCAAGGCAGTCATTGTTGATCCTATTCTGTAAAGTTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAAAA
>TRINITY_DN116329_c0_g1_i1 from sample A2 / Example unspliced isoform:GATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATA
TCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGgtatggaatactct
ctcttttcgacaccaaactatctgaaatgcttgttaaatcctgtgtgtgtataagaatccctgtcacttactgttgttcaaggattttcaattgtggaactgattatttaacaatccatatattatcagAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGA
GGATGCCATTGTCTATTTGAGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTG
TTGATCCTATTCTGTAAAGTTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAAAA
Intron 2 GTATGTCAAG ... TAATGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.2 | 24 | 47 | 2 |
| A2 | 71.7 | 15 | 38 | 2 |
| A3 | 79.59 | 10 | 39 | 3 |
| A4 | 61.54 | 10 | 16 | 1 |
| A5 | 68.75 | 5 | 11 | 0 |
| A6 | 75.34 | 54 | 165 | 5 |
| A7 | 74.23 | 101 | 291 | 10 |
| A8 | 76.91 | 145 | 483 | 36 |
| A9 | 74.94 | 112 | 335 | 20 |
| A10 | 71.65 | 72 | 182 | 4 |
>TRINITY_DN44148_c0_g1_i8 from sample A8 / Example spliced isoformGTGAATTTCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATCACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGACAGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCA
TCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATGTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATG
ATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTT
GAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGG
CCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGA
ATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAAACGTAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCT
TTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGA
AAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCAT
TGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTGCTGCGGCAACACTTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTT
ATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAG
CATCCATCTGAGAGAAATTTGGTATAGATTAGTGAACTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGT
ATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTGAGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTG
TTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGGTAGATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGC
ATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAGCAGGATATAAAGAATCCTGAGACACAATGTTTGGTGTCTGCGAATAGTTTCTGTGACTTCTCCTCTCCTTTTCTAGTATGCATGCCATAGTTTGTATTTTCATGCAAAATCTGGTTCATTAATAAAACTCT
TCCACTTGTAATGTATATACATACAAAGCAAACACAAGTAACTCCTGCCAGTTCAG
>TRINITY_DN44148_c0_g1_i2 from sample A8 / Example unspliced isoform:GTGAATTTCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATCACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGACAGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCA
TCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATGTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATG
ATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTT
GAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGG
CCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGA
ATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAAACGTAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCT
TTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGA
AAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCAT
TGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTGCTGCGGCAACACTTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTT
ATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAG
CATCCATCTGAGAGAAATTTGGTATAGATTAGTGAACTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGT
ATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTGAGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTG
TTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGgtatgtcaaggcagtcattgttgatcctattctgtaaagttgtagcttacaaaagagttatattctaagttgcacgaaacttag
gaatgggtgtggcatggaaaacatatatatatatattaaaaatagttttttctctaaatagcaaattatgatgaaaatgaaattctctaaaaattaatttaatgatgtctctaatgatctgctattctacatgacttaatgtccagGGTAGATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTC
AATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAGCAGGATATAAAGAATCCTGAGACACAATGTTTGGTGTCTGCGAATAGTTTCTGTGACTTCTCCTCTCCTTTTCTAGTATGCATGCCATAGTTTGTATTTTC
ATGCAAAATCTGGTTCATTAATAAAACTCTTCCACTTGTAATGTATATACATACAAAGCAAACACAAGTAACTCCTGCCAGTTCAG
Intron 3 GTAAGCTTTA ... TGGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.35 | 67.8 | 9.3 | 7.2 |
| A2 | 12.73 | 83 | 10.5 | 13.1 |
| A3 | 11.3 | 57.9 | 8.8 | 7.8 |
| A4 | 7.74 | 57.9 | 5.9 | 5 |
| A5 | 12.39 | 42.9 | 7.7 | 6.1 |
| A6 | 13.82 | 64.7 | 2.2 | 11.6 |
| A7 | 7.31 | 154.5 | 16.5 | 13 |
| A8 | 8.08 | 138.8 | 11.1 | 13.2 |
| A9 | 11.18 | 155.3 | 13.5 | 21.5 |
| A10 | 6.44 | 132.5 | 13.1 | 10 |
>TRINITY_DN131873_c1_g1_i10 from sample A1 / Example spliced isoformAGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTAT
CATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACT
TGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACC
GTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTAT
GATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGC
TCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGA
CACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTT
CCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAA
TGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTG
CTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAA
TGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACT
TTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTG
AGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAG
TTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAG
ATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
>TRINITY_DN131873_c1_g1_i15 from sample A1 / Example unspliced isoform:AGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGA
CAGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAA
GAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTC
TAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATC
AAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAG
GAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAA
ACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGGTCTGTCCATTCTACAAATTATACCTTAGTTTTCAGAGAATTTCAGGTTGAATATTTGTTCTTTTCGGACATGCACACTTGTGAATGGATTCCATAATTCTAGGCCACAG
ATTCTCTATGGAGAGGTTATATAAGGATAGAGTGGCATGTAAACATATATCCTGACAATAGCATAGCATGTAAACATGTATCCTGACAATAGTGAGTATGTCCTCTTCGTTATTTTTCATTGGCTTCAATGAAATTGATTGTGTAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCA
CAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTAGCTCAAAAACTTATTTTTAGATCCAAATCAGATATCTTA
AAACTTCTGGGCGTTTCAAAGTTTTTGACAGTAAAATTTGGAGGCTGCTCTGTTTCTTTGCAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAgtaagctttaattcagctcattgt
tgtgacacccaacatttgtatgatttttagttagtcatattttatgtaatgtgatgtaattagaatctccaaactattgaatttatgagtggattgcagGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGGT
AGGCACTTAATTTGCCCAAAACAGTTGAAGTACTACTTGGAAGTTACCATGTCATAGCAGCATTGCATTTACTGGATTTCTTAGAAAATTATAATATGCATTTGATGATGAGAGATGATCTGATGATTGATATGTCCCATCACAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATA
TATTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGG
Intron 4 GTGAGTTCTT ... ATCGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.57 | 100 | 14.8 | 40 |
| A2 | 30 | 70 | 11.1 | 30 |
| A3 | 32.46 | 77 | 16.6 | 37 |
| A4 | 27.19 | 63 | 7.9 | 23.5 |
| A5 | 31.58 | 26 | 3.7 | 12 |
| A6 | 31.25 | 11 | 2.1 | 5 |
| A7 | 33.82 | 99 | 13.7 | 50.6 |
| A8 | 27.12 | 43 | 7.9 | 16 |
| A9 | 24.55 | 83 | 13.8 | 27 |
| A10 | 34.21 | 133 | 14.8 | 69.2 |
>TRINITY_DN116251_c1_g1_i8 from sample A3 / Example spliced isoformGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTATC
ATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATGTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAAGAGAATGTTCTC
AGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTCTAGCATGTGTTA
TTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATCAAACTCATGCTC
ACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTG
TCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAAACGTAGAGGGAA
AATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTA
AAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTA
TAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAAT
TGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATT
ATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGG
GCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTGAGAAAAA
ATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAGTTGTAGC
TTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAGATTCAAGTGGT
CATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTG
>TRINITY_DN116251_c1_g1_i17 from sample A3 / Example unspliced isoform:GAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTATC
ATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATGTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTT
GTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCG
TCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATG
ATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCT
CTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGgtgagttcttctaagtacatagtgtgcatgttttcattttgattagcctttatcatttccaaagtctaagaacccacctttatcgttgcagTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCT
CAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGGTGATTGACTTCCTTGCTTATTATCAAATGTTATGTATTTTATACTTAGTTTCTAGAGTTTGCTGAAATTAATATTGTCTGGCCAGATACTGGACACAGAAAGAAACAAACGTAGAGG
GAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAG
Intron 5 GTAAATGTAT ... TATTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.6 | 105 | 6.4 | 27.1 |
| A2 | 10.5 | 97 | 13.3 | 24.1 |
| A3 | 5.6 | 111 | 7.1 | 25 |
| A4 | 6.25 | 110 | 8 | 22.1 |
| A5 | 7.41 | 20 | 1.8 | 2.8 |
| A6 | 4.98 | 139 | 7.7 | 41.1 |
| A7 | 4.84 | 285.4 | 15.6 | 73.3 |
| A8 | 5.61 | 302 | 19.2 | 71 |
| A9 | 6.67 | 255 | 20 | 59.4 |
| A10 | 7.15 | 223 | 18.8 | 44.4 |
>TRINITY_DN116329_c0_g1_i15 from sample A2 / Example spliced isoformATCCACCCCAAGTACGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATTTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTG
CAAGCAGGTTGTATCATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATC
ATGGAAGAAGAACTTGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTT
GATTATTAAGGACCGTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCT
TGGAACTCCCTTATGATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCT
GCAACTGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGT
CTACAGATACTGGACACAGAAAGAAACAAACGTAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCAT
CACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGAT
CAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATA
TTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGC
AAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATT
GCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTC
AGGAACAACTGTGGAGGATGCCATTGTCTATTTGAGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATG
TCAAGGCAGTCATTGTTGATCCTATTCTGTAAAGTTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAAAA
>TRINITY_DN116329_c0_g1_i14 from sample A2 / Example unspliced isoform:AGTTTTGTTGAAGCTGTTAGAGGgtaaatgtattaaacctccaatattgtcttgtatatgcatcaaaatcaaatcaatggtacagtcaatgtttaatcaatctctgaggaatttcaggtcttgtcttatctagatcttggatactgtagtgtatataacagattaaaaaaggactgatttctgatattgttcagATGGGA
CGAGGCAGCAACAGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAA
TGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAG
Intron 6 GTGAGTTCTT ... TGTATGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.91 | 57 | 28 | 57.3 |
| A2 | 44.16 | 57.7 | 20 | 44.3 |
| A3 | 50.39 | 58.3 | 27 | 56.3 |
| A4 | 51.33 | 45 | 14 | 42 |
| A5 | 48.54 | 17.7 | 7 | 16.3 |
| A6 | 44.46 | 13.7 | 4 | 10 |
| A7 | 56.54 | 70.7 | 25 | 83 |
| A8 | 50.26 | 33.3 | 15 | 32.7 |
| A9 | 44 | 58 | 26 | 44.7 |
| A10 | 54.31 | 87.7 | 28 | 95.3 |
>TRINITY_DN116251_c1_g1_i10 from sample A3 / Example spliced isoformGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGAC
AGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATGTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAAG
AGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTCT
AGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATCA
AACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAGG
AAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGGTGATTGACTTCCTTGCTTATTATCAGATGTTATGAATTTTATACTTAGTTTCTAGAG
TTTGCTGAAATTAATATTGTCTGGCCAGATACTGGACACAGAAAGAAACAAACGTAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAG
>TRINITY_DN116251_c1_g1_i17 from sample A3 / Example unspliced isoform:GAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTATC
ATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATGTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTT
GTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCG
TCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATG
ATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCT
CTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGgtgagttcttctaagtacatagtgtgcatgttttcattttgattagcctttatcatttccaaagtctaagaacccacctttatcgttgcagtgccaagtgtttaccccataaatttgtatgctagGATCT
CAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGGTGATTGACTTCCTTGCTTATTATCAAATGTTATGTATTTTATACTTAGTTTCTAGAGTTTGCTGAAATTAATATTGTCTGGCCAGATACTGGACACAGAAAGAAACAAACGTAGAGG
GAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAG
Intron 7 GTGATTGACT ... GTCTGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.58 | 144 | 39 | 24.7 |
| A2 | 8.83 | 126.4 | 29 | 12.5 |
| A3 | 12.9 | 108.7 | 39.7 | 16 |
| A4 | 12.82 | 111.4 | 24.9 | 16.6 |
| A5 | 11.03 | 36.2 | 8.5 | 4.4 |
| A6 | 9.32 | 26 | 4.3 | 2.7 |
| A7 | 5.76 | 171.6 | 58.2 | 10.5 |
| A8 | 13.2 | 75.6 | 20.7 | 11.8 |
| A9 | 8.13 | 113.5 | 24.9 | 10.2 |
| A10 | 10.61 | 202.2 | 65.6 | 24.2 |
>TRINITY_DN131873_c1_g1_i10 from sample A1 / Example spliced isoformAGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTAT
CATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACT
TGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACC
GTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTAT
GATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGC
TCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGA
CACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTT
CCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAA
TGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTG
CTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAA
TGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACT
TTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTG
AGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAG
TTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAG
ATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
>TRINITY_DN131873_c1_g1_i13 from sample A1 / Example unspliced isoform:AGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGA
CAGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAA
GAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTC
TAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATC
AAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAG
GAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGgtgattgacttccttgcttatta
tcaaatgttatgtattttatacttagtttctagagtttgctgaaattaatattgtctggccagATACTGGACACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCC
ATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCA
TTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAG
ATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTG
TTGAAGCTGTTAGAGGATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCT
AGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAA
GAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTGAGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGC
AACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAGTTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTAAATA
GCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAGATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAG
TGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
Intron 8 GTATTTTTCT ... GTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.74 | 63 | 22.4 | 23 |
| A2 | 5.36 | 53 | 16.5 | 3 |
| A3 | 15.96 | 79 | 21.4 | 15 |
| A4 | 19.7 | 53 | 11.7 | 13 |
| A5 | 15.79 | 32 | 9.9 | 6 |
| A6 | 25 | 6 | 1 | 2 |
| A7 | 17.72 | 65 | 20.4 | 14 |
| A8 | 25.86 | 43 | 6.8 | 15 |
| A9 | 22.89 | 64 | 18.5 | 19 |
| A10 | 18.18 | 63 | 15.6 | 14 |
>TRINITY_DN131873_c1_g1_i10 from sample A1 / Example spliced isoformAGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTAT
CATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACT
TGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACC
GTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTAT
GATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGC
TCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGA
CACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTT
CCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAA
TGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTG
CTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAA
TGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACT
TTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTG
AGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAG
TTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAG
ATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
>TRINITY_DN131873_c1_g1_i11 from sample A1 / Example unspliced isoform:AGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTAT
CATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAAGAGAATGTTCT
CAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTCTAGCATGTGTT
ATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATCAAACTCATGCT
CACTCATCGAGAAGAAATCATAAAGGGgtatttttctggattaatttatatcttcatcatctcctattctaaaagagtattctgtttattgctgtaagttttgtctgcctgcattttggtttctgcagTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGT
TGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGAC
TGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAG
CTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTA
TGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGG
AGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGT
TTTGTTGAAGCTGTTAGAGGATGGGACGAGGCAGCAACAGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAATGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATG
GGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACTTTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCT
GCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTGAGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATC
CTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAGTTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTA
AATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAGATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCC
TTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
Intron 9 GTAGCTCAAA ... TTCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.73 | 60 | 29 | 19.4 |
| A2 | 31.51 | 71 | 36 | 29.5 |
| A3 | 22.18 | 57 | 12 | 20.7 |
| A4 | 30.97 | 43 | 17 | 21.6 |
| A5 | 20.66 | 48 | 11 | 14 |
| A6 | 23.08 | 21 | 7 | 5.6 |
| A7 | 23.14 | 89 | 17 | 36.9 |
| A8 | 31.99 | 75.1 | 32.8 | 37.9 |
| A9 | 24.75 | 69 | 26 | 19.4 |
| A10 | 20.7 | 90 | 20 | 27.1 |
>TRINITY_DN131873_c1_g1_i10 from sample A1 / Example spliced isoformAGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTAT
CATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACT
TGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACC
GTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTAT
GATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGC
TCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGA
CACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTT
CCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAA
TGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTG
CTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAA
TGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACT
TTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTG
AGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAG
TTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAG
ATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
>TRINITY_DN131873_c1_g1_i15 from sample A1 / Example unspliced isoform:AGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGA
CAGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAA
GAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTC
TAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATC
AAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAG
GAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAA
ACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGGTCTGTCCATTCTACAAATTATACCTTAGTTTTCAGAGAATTTCAGGTTGAATATTTGTTCTTTTCGGACATGCACACTTGTGAATGGATTCCATAATTCTAGGCCACAG
ATTCTCTATGGAGAGGTTATATAAGGATAGAGTGGCATGTAAACATATATCCTGACAATAGCATAGCATGTAAACATGTATCCTGACAATAGTGAGTATGTCCTCTTCGTTATTTTTCATTGGCTTCAATGAAATTGATTGTGTAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCA
CAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGgtagctcaaaaacttatttttagatccaaatcagatatctta
aaacttctgggcgtttcaaagtttttgacagtaaaatttggaggctgctctgtttctttgcagGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGTAAGCTTTAATTCAGCTCATTGT
TGTGACACCCAACATTTGTATGATTTTTAGTTAGTCATATTTTATGTAATGTGATGTAATTAGAATCTCCAAACTATTGAATTTATGAGTGGATTGCAGGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGGT
AGGCACTTAATTTGCCCAAAACAGTTGAAGTACTACTTGGAAGTTACCATGTCATAGCAGCATTGCATTTACTGGATTTCTTAGAAAATTATAATATGCATTTGATGATGAGAGATGATCTGATGATTGATATGTCCCATCACAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATA
TATTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGG
Intron 10 GTCTGTCCAT ... GATTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.27 | 76.8 | 30.4 | 16.4 |
| A2 | 28.53 | 67.9 | 27.2 | 9.3 |
| A3 | 17.36 | 52 | 11 | 18.6 |
| A4 | 32.7 | 49.8 | 24.2 | 6.6 |
| A5 | 2.96 | 24 | 0.7 | 5.6 |
| A6 | 15.79 | 16 | 3 | 5.5 |
| A7 | 11.83 | 92.8 | 12.6 | 24.9 |
| A8 | 25.44 | 60 | 20.5 | 12.8 |
| A9 | 18.5 | 81.6 | 18.7 | 18.4 |
| A10 | 20.63 | 89.7 | 23.4 | 16.5 |
>TRINITY_DN131873_c1_g1_i10 from sample A1 / Example spliced isoformAGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTAT
CATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACT
TGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACC
GTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTAT
GATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGC
TCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGA
CACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTT
CCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAA
TGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTG
CTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAA
TGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACT
TTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTG
AGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAG
TTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAG
ATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
>TRINITY_DN131873_c1_g1_i15 from sample A1 / Example unspliced isoform:AGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGA
CAGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAA
GAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTC
TAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATC
AAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAG
GAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAA
ACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGgtctgtccattctacaaattataccttagttttcagagaatttcaggttgaatatttgttcttttcggacatgcacacttgtgaatggattccataattctaggccacag
attctctatggagaggttatataaggatagagtggcatgtaaacatatatcctgacaatagcatagcatgtaaacatgtatcctgacaatagtgagtatgtcctcttcgttatttttcattggcttcaatgaaattgattgtgtagATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCA
CAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTAGCTCAAAAACTTATTTTTAGATCCAAATCAGATATCTTA
AAACTTCTGGGCGTTTCAAAGTTTTTGACAGTAAAATTTGGAGGCTGCTCTGTTTCTTTGCAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGTAAGCTTTAATTCAGCTCATTGT
TGTGACACCCAACATTTGTATGATTTTTAGTTAGTCATATTTTATGTAATGTGATGTAATTAGAATCTCCAAACTATTGAATTTATGAGTGGATTGCAGGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGGT
AGGCACTTAATTTGCCCAAAACAGTTGAAGTACTACTTGGAAGTTACCATGTCATAGCAGCATTGCATTTACTGGATTTCTTAGAAAATTATAATATGCATTTGATGATGAGAGATGATCTGATGATTGATATGTCCCATCACAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATA
TATTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGG
Intron 11 GTAGGCACTT ... CCCATCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.87 | 83.7 | 3.3 | 41 |
| A2 | 26.73 | 74 | 3.2 | 27 |
| A3 | 39.8 | 68 | 5.9 | 45 |
| A4 | 30.33 | 68.9 | 4.8 | 30 |
| A5 | 11.83 | 14.9 | 0.6 | 2 |
| A6 | 25.59 | 72.7 | 1.3 | 25 |
| A7 | 26.35 | 131.4 | 2.5 | 47 |
| A8 | 22.56 | 123.6 | 0 | 36 |
| A9 | 21.64 | 126.7 | 5.1 | 35 |
| A10 | 30.9 | 129.7 | 1.3 | 58 |
>TRINITY_DN131873_c1_g1_i10 from sample A1 / Example spliced isoformAGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGCAAGCAGGTTGTAT
CATATGGAGGACCTTTTGATGATCAATCTACAATTGGCAGTGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACT
TGTTATGAGGATAAAGAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACC
GTCTCTGTCACACTCTAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTAT
GATTTGACATCCATCAAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGC
TCTAATGCATACGAGGAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGA
CACAGAAAGAAACAAACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCACAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTT
CCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAA
TGATACTTGGATTGCCAAGACTTGCTATAAGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATATATTGTTACTTTTCTG
CTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGGATGGCTTATCAGAAAATGTGCAAATTTTGTTCTCTGCACTGTACAATACTGTGAA
TGAGATTATTCAACAGGCTTTTGTTTTCCAAGGCCGGGATATCAGCATCCATCTGAGAGAAATTTGGTATAGATTAGTGAATTCAATGATGACAGAAGCCCAATGGGCTAGAACACATTGTATATCTTCAATGAACGAGTACATGGAAAATGCAGAAACGTCAATTGCTTTGGAGCCAATTGTTCTTTCATCACTCTACT
TTGTAGGGCCAAAGCTTTCAGAGGAAATCATCTGCCATCCTGAGTATTATAATCTCATGCATCTCCTCAATGTTTGCGGTCGTCTTTTGAATGACATTCAGGGCTGCAAGAGAGAGGCCAATCAAGGGAAGTTGAATAGCGTGACCTTGTACATGGAGGAAAATTCAGGAACAACTGTGGAGGATGCCATTGTCTATTTG
AGAAAAAATATTGATGAAAGCAGACAACTATTATTGAGAGAAGTGTTGAGACCAAGTATTGTTCCCCGTGAGTGTAAACAGCTCCATTGGAACATGATGAGAATCCTGCAACTTTTCTACCTGAAGAATGATGGTTTCACATCTCCGACAGAGATGCTTGGGTATGTCAAGGCAGTCATTGTTGATCCTATTCTGTAAAG
TTGTAGCTTACAAAAGAGTTATATTCTAAGTTGCACGAAACTTAGGAATGGGTGTGGCATGGAAAACATATATATATATATACATTAAAAATAGTTTTTTCTCTAAATAGCAAATTATGATGAAAATGAAATTCTCTAAAAATTAATTTAATGATGTCTCTAATGATCTGCTATTCTACATGACTTAATGTCCAGGGTAG
ATTCAAGTGGTCATTTGTAGGATTGAAATAGGATAGACCTAGATTGGTCAATGGTTGATTGGTTGTGGAATGAATAGGCATGCTTGCTTGGCTTCTTGTTCCTCCTTAGTGGAATGAGTTGTGTTGGTGCATGCATGTGAATAATAAAC
>TRINITY_DN131873_c1_g1_i15 from sample A1 / Example unspliced isoform:AGAAACATTTGGACAAGTGGCATTCTCACGTGAATTTCCTGCAGCAAAATAGCAATAGCGGCCAGCAGAGTAACCAATGCTGCTATATGCCAAAATAGCAATATTACAAAACCATCTTCATCTTGAAGCATGTATGCTGGTAGATTCAGAGCCACGAGGTGATGGAACATGAGCAATACACTGTTGTATCATATGGAGGA
CAGATGATCAATCTACAATTGTCAGAGTTATGTCTTACAATATATCTGCATCATGGATGTACTGATTTGACATTTTCTCAGAAAAGGAGATTTGACTGTGGCCTATGTTAAGTCCAATTGGGTTCTTTATCTCATAAAGCTGTCTCCAAGGTTCTGAATGAGAAAGAAATCATGGAAGAAGAACTTGTTATGAGGATAAA
GAGAATGTTCTCAGAAATAGAGAACATACAGACATCTGCTTCTCCTTATGATACAGCATGGGTGGCCATGGTCCCATCTCTGGACAGCTCTCAACAGCCACAGTTCCCACAATGCCTTTCCTGGATAATAGACAATCAACTCTTGGATGGATCCTGGGGAATTCTGGACTTGATTATTAAGGACCGTCTCTGTCACACTC
TAGCATGTGTTATTGCTCTTAGAAAATGGAATGCTGGCAATGAAAATGTTGAAACAGGTTTAAGATTTTTAAGAGAAAATATTGAAGGTATAATTCGTGAGGATGAATATACCCCCATTGGATTTCAAATTATCTTCCCTGCAATGTTGGAAGAGGCGAGAGGCTTGTGCTTGGAACTCCCTTATGATTTGACATCCATC
AAACTCATGCTCACTCATCGAGAAGAAATCATAAAGGGTAAAGCAATAGGCCATATGGATCAGTATGACTCATCTTTAATCTATATAGTCGAGGGAATTCATAAGATTGTTGACTGGAATAAAGTTCTCAAGCATCAGAACAAGGATGGATCGCTCTTCAATTCTCCTTCTGCAACTGCTTGTGCTCTAATGCATACGAG
GAAGAGCAATTGTCTCAAGTATTTGAGTTCAATGCTGCAAAAATTGGGGAATGGAGTGCCAAGTGTTTACCCCATAAATTTGTATGCTAGGATCTCAATGATAGATCGACTGCAGCGATTAGGATTAGCAAGACATTTCAAAAACCAGATAATGCATGCTTTAGATGATGTCTACAGATACTGGACACAGAAAGAAACAA
ACATAGAGGGAAAATCACCAACACCAGAAATTGTTAGCACTTCCATTGCTTTCATGCTTTTACGGTTGCATGGATATGATGTACCTGCAGGTCTGTCCATTCTACAAATTATACCTTAGTTTTCAGAGAATTTCAGGTTGAATATTTGTTCTTTTCGGACATGCACACTTGTGAATGGATTCCATAATTCTAGGCCACAG
ATTCTCTATGGAGAGGTTATATAAGGATAGAGTGGCATGTAAACATATATCCTGACAATAGCATAGCATGTAAACATGTATCCTGACAATAGTGAGTATGTCCTCTTCGTTATTTTTCATTGGCTTCAATGAAATTGATTGTGTAGATGTCTTTTGCCGTTATGAGCTCCATGCTATTGAGCAAAGTGGTGAAGCTGTCA
CAGCAATGTTGAGTTTATACAGAGCATCACAGGTTATGTTTCCGGGAGAAACAATTTTAGAAGAAGTAAAAACCTTCTCCAGGAAATATCTCGAGAAAAGAAAAGAAAATGGTAGAGTTTATGACCACAATATTGTTATGAAGGATCTTCATGGAGAGGTAGCTCAAAAACTTATTTTTAGATCCAAATCAGATATCTTA
AAACTTCTGGGCGTTTCAAAGTTTTTGACAGTAAAATTTGGAGGCTGCTCTGTTTCTTTGCAGGTTGAGTATGCATTAAGTGTTCCCTGGTATGCCAGTCTGGAAAGAATAGAAAATAGAAGATACATTGATCAATATGGTGTTAATGATACTTGGATTGCCAAGACTTGCTATAAGTAAGCTTTAATTCAGCTCATTGT
TGTGACACCCAACATTTGTATGATTTTTAGTTAGTCATATTTTATGTAATGTGATGTAATTAGAATCTCCAAACTATTGAATTTATGAGTGGATTGCAGGATACCCTGTATTAGCAATGATTTGTTCTTAGCATTGGCAAAACATGACTACAATATGTGTCAAACAATACAACAGAAGGAATTACGAGAGTTGGAGAGgt
aggcacttaatttgcccaaaacagttgaagtactacttggaagttaccatgtcatagcagcattgcatttactggatttcttagaaaattataatatgcatttgatgatgagagatgatctgatgattgatatgtcccatcacagATGGTTTGCAGATAATAAATTTAGTCACCTAAACTTTGCTCGACAAAAGCTGATA
TATTGTTACTTTTCTGCTGCGGCAACAATTTCTAGTCCAGAATTGTCTGCTGCCCGTGTGGTATGGGCCAAGAATGGAGTTATCACTACGGTGGTAGACGATTTTTTTGATGTAGGGGGGTCAAATGAAGAGATTCACAGTTTTGTTGAAGCTGTTAGAGG