sp|F4J8K6|RRP5_ARATH ----> rRNA biogenesis protein RRP5


Intron 1 GTCTGAACTC ... CCACTGACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A179.57196682
A275.38164355
A383.33114565
A470.86225948
A570.37122136
A666.67152238
A771.95234276
A880.7113458
A969.783449108
A1068.31295570



>TRINITY_DN123417_c0_g3_i10 from sample A2 / Example spliced isoform
AGGAATTCAAGTCCCTTGATGGTAAGCCGTCATTGTAACATCTCTCTTCGACTCCAGAACTCCCACAGGGTCTCTCTCTCTTCTTATACTGATTTCAAAGCAATTTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTAA
CTACCGTAGGGTTTAGCGCCTCTATTGCCACAAACACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACGCGATTTTTAACGTAATCCGGTTCACATTTTATCTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCATG
GCCGAGGGATTTTCCAGTTCCTTCAAGAGCTTATGGTAGCAGCAGCCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAAGGAAGAAGACGTGGTCTCTTTGAATGGGAGCGAGTTCCTCTTCCAATCGAGCCCGATGTTGTCCTTCTTGACATTGCTTTTGTTACAGGCGAGCGCACCCTTACCAAACATTTCC
GGTACATACGCGTGTTAGTTTTTCGATTCGCTCGAAAGACGAGGAATCTGAAAGAGTGATCGCGAGCTGATATCTCATTGTGAAAAACTCCTACGGCGTAATTAGGGCTGAAAGGAAGCGGGACCCACTCAAGTTTTGTAGCCTCAAGTTCTTCAACAATCATGGGGTCGACGAAAACTCCGAAGAGGAAAAGAAGCGAT
ATAAAACCTTCAGCAGAGACCTTAACCCCACTGGAGGAAGAAGCTCCTGATTTCCCTCGAGGAGGTGCGAGCGTGCTGAGTCGGTCGGAGATAGACGAAGCAAGAGCCGAGGTGGATGCCAAGTTCGAAGCCGAGCAGAGAGGGTCTAAAAAGCGTAAGAAAACTAGACAGTCGAATGCTTTCGATCATGAGGGCGACGC
TCTTTTTCACAATGGGATCAGCGGAAAACTCCCGAAAATTGTCAAGATTCTTCGTTTCAAGAGTTTATCGACTGGAATGAAGCTGTGGGGGGTCATTGCTGAGGTGAATAGTAAGGATCTTGTCATAAGCCTCCCTGGTGGCCTGCGTGGGATTGTCACTGCAGATGAAGCATCTGATTACTTATCTGAGTTACAAAGCA
TAATGCCAAGTACTACACAAGATGTTATTATAAAGAAGAAGGCATTGCATGGGAAAGAAATCTCGAAATCCAGAAATGAAATTGGTAATTTGTCCATAGAGGATTTGTTCACAGTAGGACAGCTTGTTCCTTGTGTTGTCTGCAGACTGGGACGCGGTGAGGAAAATGAAACAATAAAGGACAGTAAAAGAATCTGCCTG
TCATTGCGACTTAGTTTGCTCCACAAAGGACTGACTATTGAGGCAGTTCAAGATGGAATGGTGATGATGGCTTGTGTGAAAAGTGTAGAAGATCATGGTTATGTCCTATCATTTGGGTTGCCTTCATTCTCTGGTTTCTTGCCGCACAGGGACAATAAAGCTGGGAGTACCGGATCAAAGTTGAAGAAGGGCCAGCTAGT
CCAAGGAGTTGTTTCAGGCATTGATAGAGTAACACGTGTGATTTCTATGAAAATTGATCCTACGCTGGTGAATAATAATATGATTAAAGACTATGGAGGATTATCAGTGGATCTTCTGGTACCTGGGACAATGGTTAATGCACGCGTGCAAGCAATATTGCGTAATGGATTGTTACTCTCGTTTCTTACCTATTTTACAG
GGACAGTTGATATCTTCCATTTGCAAGATCCATTTCCTAGTTCGAATTGGAAAGAAAAGTTCCCAGAAAATGCAAGGTTGAAAGCAAGGATTTTGTATGTAGATCCCACGACAAAGGCTGTTGGCTTGACACTTAATCCTCACCTCATTCAGAACAAGGTTCCCCCCATGGCTGTTAAATTAGGGGAAATTTTTGACGAA
GCACAGGTGGTTAGAGTTGATCATGCTTTTGGTGTCTTAGTGGAGCTTCCCTCGAAACCAGTTCCAACACCCGGCTTTGTAAATATTAAAGATGCTTCTGATGACGGTCTTCAAAAGTTGGAGAAGAGATTCAAAGAGGGCAGCAAAGTTCGTGCAAGAGTTCTGGGATTTAGATTCACTGAAGGGATAGCTCTAGCCAC
ACTGAAGGCGTCTGTTTTAGAACAATCAGTTTTTCATTATTCAGATGTAAAGCCTGGCATGTTGGTGCAAGCTAAGGTTTCTAGAGTAGTACCATCTGGTGCAGTTCTACAGCTTTTAAACGGTCTAAAGGCTTTCTGCCCTCTTCAGCACATGTCAGAGTTTGGTGTTGCAAAGCCAACCGAGAGATTTCAGGTTGGAG
CAAAACTGCAGTTTCGTGTTTTGGGATGCAAGTCAAAGCGAATATCTGTGACACATAAGAAGACTTTGGTCACGTCAAAGTTGGAAACAGTTAGTAGTTATGATGCTGCTGAGGGCATTATCACTCATGGATGGATTGCTGGCATCACAAGTTATGGATGCGTTGTGAAATTCTACAATGGCATCAGAGGTTATGCACAC
AG
AGGCTTTCATGGATGTACAGTAGATAATGTAGATGACCTTAGACCTGGCACGGAGGTCCAGGTGGATGAGGAAAATAAGCATATATCATTGGGCATGAAAGAAACTAGTGTACTTACATATAAAGAGTCTGTAGAGGAGGATGGTAGTGAGGACACTGTAAGGGATAATTCTGACCCGAGTTCTGAAGATAACAGGGA
ATACAAAATACAGGTTTTATCCAAAGAAAATGACAAGGTTGAAACTAGGGATCTGGCAGCTGATATTTTTAATTCTCTTGAACTAGCAAGAGAAGTTGAATCAAGGGCGTCTATACCTCCCCTGGAAGTTAACTTTGATACAGACGCAAATGTGTCTGGGAGTGCAATTGTTGACAAGAGAAAGCATCTTGATAATGAGC
CTTCTGAAATGGGAAGCAAGGATGACGAAAAGTTGACCAAGCGAGCAAAGAAAAAGCTTAAAGAAAAGAGGGAGCTAGAGATCAGAGCTGCTGAAAAAAAACGTTTGGAAGGTGGCCAAGCACCAGATAGCGTGGATGAATATGAGCAGTTGGTGCGGACATCTCCAAATAGTAGCTTTGTTTGGATCAAGTACATGGCT
TTCCTGTTATCCATTGCAGATGTTGAGAAAGCACGTGCCATTGCTGAAAGGGCTTTGCAAACAATAAATTTCAGGGAGGAGGAGGAAAAGCTAAATGTTTGGGTGGCTTTTTTTAATCTGGAAAATGTTTATGGCACTCCACCAAATGAGGCTGTTTTAAAAGTCTTCCAGAGAGCACTGCAGTATTGTGACCCCAAAAA
AGTTCACCTTGCTTTACTGGGAATGTATGAACGGACTGGACAGCAAGAAATGGCTGATCAGCTACTTAAAGCCATGACCAAAAAGTTCAAAGCGTCTGCCAAGGTGTGGCTGAGGAATATGCAAAACCTGTTGAAGCAAGGAAGTGATGGAGCTGAAATGATTTTAAATCGTGCACTAGTTAGTCTTCCACGTCATAAGC
ACATTAAGTTTATTTCACGGGCTGCAGTTCTTGAATATAAAATTGGTTCAGCTGAAAGAGCACGATTACTGTTCGAAGGAGTGTTAAGGAATTACCCTAAGAGAACAGATCTGTGGAGCGTGTATCTTGACCAGGAAATTTGCCGAGGAGATGCATCTGTCATTCGATTACTTTTTGAAAGAGTCACTTGTCTGGACTTG
CCCCCCAAGAAGATGAAGTTTCTCTTCAAGAAGTACCTTGATTATGAGAAATCTCAAGGTGAGGAATCACGGATTGAATATGTGAAGAAAAAGGCAATGGAGTTTGTTAACAGCAAACTTGGTTGAGAAACTTCTTGATTATATATGTTTCAATGGATTGAATATGTCAGCATTAGAGATTCCAGTACTGGTTACATACC
CAAAATGCTGGTATGGTTATGGGTATACTGGATACACGACAAATGTATCCTTGCTATGTATGCTAATCTTCTTGCATGCAGATCCTAGGTTCTTTTATCCCTTACCTATATTGATTATTATTTGTACATGAGAATATGGGCTTGTCTTTTGTTCTATGAATGTGAATGGCATCTCGTGACCATGGCCCATGTCAAGGCAC
ATCAGTGGTGGTATTAGCGCAAATTTGGACCTTGTTGGCCTGTGCCTAATATTTCGCTCGTGGCTACTTAACTCTAGCTTACACATGATTCTACTGTAAAACACAACCACAATACTCCTCATTTTAAGAGTGTTCCAGCATAATGTATCAGTTGTGAATTATATTCTGCTAATTTCCA


>TRINITY_DN123417_c0_g3_i9 from sample A2 / Example unspliced isoform:
AGGAATTCAAGTCCCTTGATGGTAAGCCGTCATTGTAACATCTCTCTTCGACTCCAGAACTCCCACAAGGTCTCTCTCTCTTCTTATGCTGATTTCAAAGCAAATTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTAA
CCACCGTAGGGTTTGGCGCCTCTATTGCCACAAACACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACGCGATTTTTAACGTAATCCGGTTCACATTTTATCTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCATG
GCCGAGGGATTTTCCAGTTCCGTCAAGAGCTTATGGTAGCAGCAAACCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAAGGAAGAAGACGTGGTCTCTTTGAATGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGACATTGCTTTTGTTACAGGCGAGCGCACCCTTACCAAACATTTC
CGGTACATACGCGTGTTAGTTTTTCGATTCGCTCGAAAGACGAGGAATCTGAAAGAGTGATCGCGAGCTGATATCTCATTGTGAAAAACTCCTACGGCGTAATTAGGGCTGAAAGGAAGCGGGACCCACTCAAGTTTTGTAGCCTCAAGTTCTCCAACAATCATGGGGTCGACGAAAACTCCGAAGAGGAAAAGAAGCGA
TATAAAACCTTCAGCAGAGACCTTAACCCCACTGGAGGAAGAAGCTCCTGATTTCCCTCGAGGAGGTGCGAGCGTGCTGAGTCGGTCGGAGATAGACGAAGCAAGAGCCGAGGCGGATGCCAAGTTCGAAGCCGAACAGAGAGGGTCTAAAAAGCGGAAGAAAACTAGACAGTCGAATGCTTTCGATCATGAGGGCGACG
CTCTTTTTCACAATGGGATCAGCGGAAAACTCCCGAAAATTGTCAAGATTCTTCGTTTCAAGAGTTTATCGACTGGAATGAAGCTGTGGGGGGTCATTGCTGAGGTGAATAGTAAGGATCTTGTCATAAGCCTCCCTGGTGGCCTGCGTGGGATTGTCACTGCAGATGAAGCATCTGATTACTTATCTGAGTTACAAAGC
ATAATGCCAAGTACTACACAAGATGTTATTATAAAGAAGAAGGCATTGCATGGGAAAGAAATCTCGAAATCCAGAAATGAAATTGGTAATTTGTCCATAGAGGATTTGTTCACAGTAGGACAGCTTGTTCCTTGTGTTGTCTGCAGACTGGGACGCGGTGAGGAAAATGAAACAATAAAGGACAGTAAAAGAATCTGCCT
GTCATTGCGACTTAGTTTGCTCCACAAAGGACTGACTATTGAGGCAGTTCAAGATGGAATGGTGATGATGGCTTGTGTGAAAAGTGTAGAAGATCATGGTTATGTCCTATCATTTGGGTTGCCTTCATTCTCTGGTTTCTTGCCGCACAGGGACAATAAAGCTGGGAGTACCGGATCAAAGTTGAAGAAGGGCCAGCTAG
TCCAAGGAGTTGTTTCAGGCATTGATAGAGTAACACGTGTGATTTCTATGAAAATTGATCCTACGCTGGTGAATAATAATATGATTAAAGACTATGGAGGATTATCAGTGGATCTTCTGGTACCTGGGACAATGGTTAATGCACGCGTGCAAGCAATATTGCGTAATGGATTGTTACTCTCGTTTCTTACCTATTTTACA
GGGACAGTTGATATCTTCCATTTGCAAGATCCATTTCCTAGTTCGAATTGGAAAGAAAAGTTCCCAGAAAATGCAAGGTTGAAAGCAAGGATTTTGTATGTAGATCCCACGACAAAGGCTGTTGGCTTGACACTTAATCCTCACCTCATTCAGAACAAGGTTCCCCCCATGGCTGTTAAATTAGGGGAAATTTTTGACGA
AGCACAGGTGGTTAGAGTTGATCATGCTTTTGGTGTCTTAGTGGAGCTTCCCTCGAAACCAGTTCCAACACCCGGCTTTGTAAATATTAAAGATGCTTCTGATGACGGTCTTCAAAAGTTGGAGAAGAGATTCAAAGAGGGCAGCAAAGTTCGTGCAAGAGTTCTGGGATTTAGATTCACTGAAGGGATAGCTCTAGCCA
CACTGAAGGCGTCTGTTTTAGAACAATCAGTTTTTCATTATTCAGATGTAAAGCCTGGCATGTTGGTGCAAGCTAAGGTTTCTAGAGTAGTACCATCTGGTGCAGTTCTACAGCTTTTAAACGGTCTAAAGGCTTTCTGCCCTCTTCAGCACATGTCAGAGTTTGGTGTTGCAAAGCCAACCGAGAGATTTCAGGTTGGA
GCAAAACTGCAGTTTCGTGTTTTGGGATGCAAGTCAAAGCGAATATCTGTGACACATAAGAAGACTTTGGTCACGTCAAAGTTGGAAACAGTTAGTAGTTATGATGCTGCTGAGGGCATTATCACTCATGGATGGATTGCTGGCATCACAAGTTATGGATGCGTTGTGAAATTCTACAATGGCATCAGAGGTTATGCACA
CAG
gtctgaactcggaattgatccaggaaaagaagtgggatcagcatttcatattggacaggttgttaggtgtagagtattacgttcggatcctgcatttcataacgttcagcttagttttatcatctccactgacagAGGCTTTCATGGATGTACAGTAGATAATGTAGATGACCTTAGACCTGGCACGGAGGTCCAGG
TGGATGAGGAAAATAAGCATATATCATTGGGCATGAAAGAAACTAGTGTACTTACATATAAAGAGTCTGTAGAGGAGGATGGTAGTGAGGACACTGTAAGGGATAATTCTGACCCGAGTTCTGAAGATAACAGGGAATACAAAATACAGGTTTTATCCAAAGAAAATGACAAGGTTGAAACTAGGGATCTGGCAGCTGAT
ATTTTTAATTCTCTTGAACTAGCAAGAGAAGTTGAATCAAGGGCGTCTATACCTCCCCTGGAAGTTAACTTTGATACAGACGCAAATGTGTCTGGGAGTGCAATTGTTGACAAGAGAAAGCATCTTGATAATGAGCCTTCTGAAATGGGAAGCAAGGATGACGAAAAGTTGACCAAGCGAGCAAAGAAAAAGCTTAAAGA
AAAGAGGGAGCTAGAGATCAGAGCTGCTGAAAAAAAACGTTTGGAAGGTGGCCAAGCACCAGATAGCGTGGATGAATATGAGCAGTTGGTGCGGACATCTCCAAATAGTAGCTTTGTTTGGATCAAGTACATGGCTTTCCTGTTATCCATTGCAGATGTTGAGAAAGCACGTGCCATTGCTGAAAGGGCTTTGCAAACAA
TAAATTTCAGGGAGGAGGAGGAAAAGCTAAATGTTTGGGTGGCTTTTTTTAATCTGGAAAATGTTTATGGCACTCCACCAAATGAGGCTGTTTTAAAAGTCTTCCAGAGAGCACTGCAGTATTGTGACCCCAAAAAAGTTCACCTTGCTTTACTGGGAATGTATGAACGGACTGGACAGCAAGAAATGGCTGATCAGCTA
CTTAAAGCCATGACCAAAAAGTTCAAAGCGTCTGCCAAGGTGTGGCTGAGGAATATGCAAAACCTGTTGAAGCAAGGAAGTGATGGAGCTGAAATGATTTTAAATCGTGCACTAGTTAGTCTTCCACGTCATAAGCACATTAAGTTTATTTCACGGGCTGCAGTTCTTGAATATAAAATTGGTTCAGCTGAAAGAGCACG
ATTACTGTTCGAAGGAGTGTTAAGGAATTACCCTAAGAGAACAGATCTGTGGAGCGTGTATCTTGACCAGGAAATTTGCCGAGGAGATGCATCTGTCATTCGATTACTTTTTGAAAGAGTCACTTGTCTGGACTTGCCCCCCAAGAAGATGAAGTTTCTCTTCAAGAAGTACCTTGATTATGAGAAATCTCAAGGTGAGG
AATCACGGATTGAATATGTGAAGAAAAAGGCAATGGAGTTTGTTAACAGCAAACTTGGTTGAGAAACTTCTTGATTATATATGTTTCAATGGATTGAATATGTCAGCATTAGAGATTCCAGTACTGGTTACATACCCAAAATGCTGGTATGGTTATGGGTATACTGGATACACGACAAATGTATCCTTGCTATGTATGCT
AATCTTCTTGCATGCAGATCCTAGGTTCTTTTATCCCTTACCTATATTGATTATTATTTGTACATGAGAATATGGGCTTGTCTTTTGTTCTATGAATGTGAATGGCATCTCGTGACCATGGCCCATGTCAAGGCACATCAGTGGTGGTATTAGCGCAAATTTGGACCTTGTTGGCCTGTGCCTAATATTTCGCTCGTGGC
TACTTAACTCTAGCTTACACATGATTCTACTGTAAAACACAACCACAATACTCCTCATTTTAAGAGTGTTCCAGCATAATGTATCAGTTGTGAATTATATTCTGCTAATTTCCA




Intron 2 GTAAAATTTC ... CGTTTTACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A125.1621724.6
A223.28591223.9
A322.0295.91935.1
A426.7652830
A529.26482910.7
A625.73731.9
A722.6729116
A824.29603.9
A933.4821813.1
A1022.5229412.9



>TRINITY_DN132329_c0_g1_i1 from sample A1 / Example spliced isoform
GTAACATCTCTCTTCGACTCCAGAACTCCCACAAGGTCTCTCTCTCTTCTTATGCTGATTTCAAAGCAAATTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTAACTACCGTAGGGTTTAGCGCCTCTATTGCCACAAA
CACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACACGATTTTTAACGTAATCCGGTTCACATTTTATTTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCATGGCCGAGGGATTTTCCAGTTCCTTCAAGAGCTTAT
GGTAGCAGCAGCCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAAGGAAGAAGACGTGGTCTCTCTGAATGGGAGCGAGTTCCTCTTCCAATCGAGCCCGATGTTGTCCTTCTTGACATTGCTTTTGTTACAGGCGAGCGCACCCTTACCAAACATTTCCGGTACATACGCGTGTTAGTTTTTCGATTCGCTCG
AAAGACGAGGAATCTGAAAGAGTGATCGCGAGCTGATATCTCATTGTGAAAAACTCCTACGGCGTAATTAGGGCTGAAAGGAAGCGGGACCCACTCAAGTTTTGTAGCCTCAAGTTCTTCAACAATCATGGGGTCGACGAAAACTCCGAAGAGGAAAAGAAGCGATATCAAACCTTCAGCAGAGACCTTAACCCCACTGG
AGGAAGAAGCTCCTGATTTCCCTCGAGGAGGTGCGAGCGTGCTGAGTCGGTCGGAGATAGACGAAGCAAGAGCCGAGGTGGATGCCAAGTTCGAAGCCGAGCAGAGAGGGTCTAAAAAGCGTAAGAAAACTAGACAGTCGAATGCTTTCGATCATGAGGGCGACGCTCTTTTTCACAATGGGATCAGCGGAAAACTCCCG
AAAATTGTCAAGATTCTTCGTTTCAAGAGTTTATCGACTGGAATGAAGCTGTGGGGGGTCATTGCTGAGGTGAATAGTAAGGATCTTGTCATAAGCCTCCCTGGTGGCCTGCGTGGGATTGTCACTGCAGATGAAGCATCTGATTACTTATCTGAGTTACAAAGCATAATGCCAAGTACTACACAAGATGTTATTATAAA
GAAGAAGACATTGCATGGGAAAGAAATCTCGAAATCCAGAAATGAAATTGGTAATTTGTCCATAGAGGATTTGTTCACAGTAGGACAGCTTGTTCCTTGTGTTGTCTGCAGACTGGGACGCGGTGAGGAAAATGAAACAATAAAGGACAGTAAAAGAATCTGCCTGTCATTGCGACTTAGTTTGCTCCACAAAGGACTGA
CTATTGAGGCAGTTCAAGATGGAATGGTGATGATGGCTTGTGTGAAAAGTGTAGAAGATCATGGTTATGTCCTATCATTTGGGTTGCCTTCATTCTCTGGTTTCTTGCCGCACAGGGACAATAAAGCTGGGAGTACCGGATCAAAGTTGAAGAAGGGCCAGCTAGTCCAAGGAGTTGTTTCAGGCATTGATAGAGTAACA
CGTGTGATTTCTATGAAAATTGATCCTACGCTGGTGAATAATAATATGATTAAAGACTATGGAGGATTATCAGTGGATCTTCTGGTACCTGGGACAATGGTTAATGCACGCGTGCAAGCAATATTGCGTAATGGATTGTTACTCTCGTTTCTTACCTATTTTACAGGGACAGTTGATATCTTCCATTTGCAAGATCCATT
TCCTAGTTCGAATTGGAAAGAAAAGTTCCCAGAAAATGCAAGGTTGAAAGCAAGGATTTTGTATGTAGATCCCACGACAAAGGCTGTTGGCTTGACACTTAATCCTCACCTCATTCAGAACAAGGTCCCCCCCATGGCTGTTAAATTAGGGGAAATTTTTGACGAAGCACAGGTGGTTAGAGTTGATCATGCTTTTGGTG
TCTTAGTGGAGCTTCCCTCGAAACCAGTTCCAACACCCGGCTTTGTAAATATTAAAGATGCTTCTGATGACGGTCTTCAAAAGTTGGAGAAGAGATTCAAAGAGGGCAGCAAAGTTCGTGCAAGAGTTCTGGGATTTAGATTCACTGAAGGGATAGCTCTAGCCACACTGAAGGCGTCTGTTTTAGAACAATCAGTTTTT
CATTATTCAGATGTAAAGCCTGGCATGTTGGTGCAAGCTAAGGTTTCTAGAGTAGTACCATCTGGTGCAGTTCTACAGCTTTTAAACGGTCTAAAGGCTTTCTGCCCTCTTCAGCACATGTCAGAGTTTGGTGTTGCAAAGCCAACCGAGAGATTTCAGGTTGGAGCAAAACTGCAGTTTCGTGTTTTGGGATGCAAGTC
AAAGCGAATATCTGTGACACATAAGAAGACTTTGGTCACGTCAAAGTTGGAAACAGTTAGTAGTTATGATGCTGCTGAGGGCATTATCACTCATGGATGGATTGCTGGCATCACAAGTTATGGATGCGTTGTGAAATTCTACAATGGCATCAGAGGTTATGCACACAGGTCTGAACTCGGAATTGATCCAGGAAAAGAAG
TGGGATCAGCATTTCATATTGGACAGGTTGTTAGGTGTAGAGTATTACGTTCGGATCCTGCATTTCATAACGTTCAGCTTAGTTTTATCATCTCCACTGACAGAGGCTTTCATGGATGTACAGTAGATAAAGTAGATGACCTTAGACCTGGCACGGAGGTCCAGGTAACTGTTTACTTTTCAAAAGTTTAATCTGCAATA
CTTGGATATTCTTAGTGTAAATTTTTCACTGCTATTCCCCAACCCGGTTTCAAGCTAACTTCTCATTGTTTAATGCCCAACCCAATGAACGTGACAGCTGCAAATGAATTGTTTTCTCATAAACAAATTGAACTGGAATCACTAGCAGAATTTTGCAAACTTTATGAGCAGAAATAAAATCACATTCACACCATGAAATT
GCAGACTCAGTAATTTTTGGCCAACTAGCCCAGAAAAAACCCCCGCAAAACCTGTGAGAGATAGTGAGAGTATTTATTTCTTCATCAAAAAATGAAATTTACAGCAGTAATGAAGACAGTGAATACAACTTATCTCAACCCAATGAAGACAATAATCCAAGCCTGAAAATTTTAGTGCTGTAGATGACTTGTGCTTAGTA
CAAAAACAGCATTGAAAATGTGCAAATTCAAATTCAGAAAAGTGTGCATTGAAAAGTGTGCTCACAG


>TRINITY_DN132329_c0_g1_i10 from sample A1 / Example unspliced isoform:
GTAACATCTCTCTTCGACTCCAGAACTCCCACAAGGTCTCTCTCTCTTCTTATGCTGATTTCAAAGCAAATTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTAACCACCGTAGGGTTTGGCGCCTCTATTGCCACAAA
CACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACACGATTTTTAACGTAATCCGGTTCACATTTTATTTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCATGGCCGAGGGATTTTCCAGTTCCGTCAAGAGCTTAT
GGTAGCAGCAAACCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAAGGAAGAAGACGTGGTCTCTCTGAATGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGACATTGCTTTTGTTACAGGCGAGCGCACCCTTACCAAACATTTCCGGTACATACGCGTGTTAGTTTTTCGATTCGCTC
GAAAGACGAGGAATCTGAAAGAGTGATCGCGAGCTGATATCTCATTGTGAAAAACTCCTACGGCGTAATTAGGGCTGAAAGGAAGCGGGACCCACTCAAGTTTTGgtaaaatttctttcctcagagctttgaggttttggagaggtttatgttctgcagaaattttatttgtccgaccttatcctgatcacgccatccgc
tgcttccgccgttttacag
TAGCCTCAAGTTCTTCAACAATCATGGGGTCGACGAAAACTCCGAAGAGGAAAAGAAGCGATATCAAACCTTCAGCAGAGACCTTAACCCCACTGGAGGAAGAAGCTCCTGATTTCCCTCGAGGAGGTGCGAGCGTGCTGAGTCGGTCGGAGATAGACGAAGCAAGAGCCGAGGCGGATGC
CAAGTTCGAAGCCGAACAGAGAGGGTCTAAAAAGCGGAAGAAAACTAGACAGTCGAATGCTTTCGATCATGAGGGCGACGCTCTTTTTCACAATGGGATCAGCGGAAAACTCCCGAAAATTGTCAAGATTCTTCGTTTCAAGAGTTTATCGACTGGAATGAAGCTGTGGGGGGTCATTGCTGAGGTGAATAGTAAGGATC
TTGTCATAAGCCTCCCTGGTGGCCTGCGTGGGATTGTCACTGCAGATGAAGCATCTGATTACTTATCTGAGTTACAAAGCATAATGCCAAGTACTACACAAGATGTTATTATAAAGAAGAAGACATTGCATGGGAAAGAAATCTCGAAATCCAGAAATGAAATTGGTAATTTGTCCATAGAGGATTTGTTCACAGTAGGA
CAGCTTGTTCCTTGTGTTGTCTGCAGACTGGGACGCGGTGAGGAAAATGAAACAATAAAGGACAGTAAAAGAATCTGCCTGTCATTGCGACTTAGTTTGCTCCACAAAGGACTGACTATTGAGGCAGTTCAAGATGGAATGGTGATGATGGCTTGTGTGAAAAGTGTAGAAGATCATGGTTATGTCCTATCATTTGGGTT
GCCTTCATTCTCTGGTTTCTTGCCGCACAGGGACAATAAAGCTGGGAGTACCGGATCAAAGTTGAAGAAGGGCCAGCTAGTCCAAGGAGTTGTTTCAGGCATTGATAGAGTAACACGTGTGATTTCTATGAAAATTGATCCTACGCTGGTGAATAATAATATGATTAAAGACTATGGAGGATTATCAGTGGATCTTCTGG
TACCTGGGACAATGGTTAATGCACGCGTGCAAGCAATATTGCGTAATGGATTGTTACTCTCGTTTCTTACCTATTTTACAGGGACAGTTGATATCTTCCATTTGCAAGATCCATTTCCTAGTTCGAATTGGAAAGAAAAGTTCCCAGAAAATGCAAGGTTGAAAGCAAGGATTTTGTATGTAGATCCCACGACAAAGGCT
GTTGGCTTGACACTTAATCCTCACCTCATTCAGAACAAGGTCCCCCCCATGGCTGTTAAATTAGGGGAAATTTTTGACGAAGCACAGGTGGTTAGAGTTGATCATGCTTTTGGTGTCTTAGTGGAGCTTCCCTCGAAACCAGTTCCAACACCCGGCTTTGTAAATATTAAAGATGCTTCTGATGACGGTCTTCAAAAGTT
GGAGAAGAGATTCAAAGAGGGCAGCAAAGTTCGTGCAAGAGTTCTGGGATTTAGATTCACTGAAGGGATAGCTCTAGCCACACTGAAGGCGTCTGTTTTAGAACAATCAGTTTTTCATTATTCAGATGTAAAGCCTGGCATGTTGGTGCAAGCTAAGGTTTCTAGAGTAGTACCATCTGGTGCAGTTCTACAGCTTTTAA
ACGGTCTAAAGGCTTTCTGCCCTCTTCAGCACATGTCAGAGTTTGGTGTTGCAAAGCCAACCGAGAGATTTCAGGTACTTGATGTCTGCATTTTAACCTCCTTTTACTTCTATTTTTTTGCAGTAGACCATAATTTGCTATTATGAGTTTTTGTGAGTTTGCTTTTTGACAATATTAAGTATGCAGGAATTTACTCCTAG
CATGAAGGACCGGAAGGGAAGAAAATGCTTGTAGGCTAGTTTGCTTGTTTTTGAGCTATGATGTATAAGAATTTGCTGTAATTATTAAAAGGTTTGACAGTTTTTTCTTCATGAAACATCTGTCCAGTATAATAGTATATATCTATCTTACACCAATTTTCTGGTACGTGGGCATGCTGGTCATGGGTATGTGTGGAAAT
CGTCCCAAAAAAATTCCAGGG




Intron 3 GTAAACAATA ... ATGCTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A118.751330
A201100
A316.671020
A431.821573
A50400
A613.513250
A7203280
A8203690
A913.953760
A1012.823450



>TRINITY_DN110289_c0_g1_i13 from sample A4 / Example spliced isoform
GTAACATCTCTCTTCGACTCCAGAACTCCCACAAGGTCTCTCTCTCTTCTTATGCTGATTTCAAAGCAAATTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTAACCACCGTAGGGTTTGGCGCCTCTATTGCCACAAA
CACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACGCGATTTTTAACGTAATCCGGTTCACATTTTATCTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCATGGCCGAGGGATTTTCCAGTTCCTTCAAGAGCTTAT
GGTAGCAGCAGCCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAGGGCAGAAGACGTGGGTCTCTCTGAGTGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGACATTGCTTTTGTTCCAGGCGAGCCCACCCATGGTTTTCTCCTTGGTACAAGGCAAACGCTTTTGGAGACGAAGGATG
GGGGGGCCTCCTGGGTTCCCCGCTCAATCCCTGCAGCAGAAGATGAAGACTTCAATTACAGATTCAATTCCATAAGTTTCAAGGGAAAAGAGGGTTGGATAGTTGGAAAGCCAGCTATTTTACTGCACACTTCTGATGCTGGAGAAAACTGGGAGCGTATACCTTTAAGTTCTCAACTTCCTGGGGATCTGGTATATATC
CAAGCAACCGGTGAAAAAAGTGCAGAGATGGTTACTGATGAAGGGGCTATTTATGTAACTTCAAATAAAGGATACAATTGGAAGGCTGCTGTGCAAGAAACTGTTTCTGCTACCTTAAACCGCACAGTTTCTAGTGGTATCAGTGGTGCAAGTTACTACACGGGAACTTTTAATACAGTTAACCGTTCTCCCAATGGTGA
TTATGTGGCTGTTTCAAGCCGTGGGAATTTTTATCTAACATGGGAGCCTGGCCAGCCATATTGGCAGCCACACAACAGAACCAGTGCTCGCAGGATTCAGAACATGGGTTGGCGTGCTGATGGTGGACTGTGGCTTCTTGTACGTGGCGGTAGTCTCTACCTTAGCAGAGGCTCAGGGATCACTGAGGAGTTTGATGAAG
TACCAATTTCAAGTCGGGGTTTTGGCATTCTTGACGTTGGGTATCGTTCAAAGGATGAAGCTTGGGCAGCTGGAGGCAGTGGCATTTTGCTGAGGACAGTAAATGGTGGAAAGACATGGATCCGTGACAAGGCTGCAGATAATATAGCAGCTAATCTTTACGCTGTGAACACAGTTTCTAGTGGTATCAGTGGTGCAAGT
TACTACACGGGAACTTTTAATACAGTTAACCGTTCTCCCAATGGTGATTATGTGGCTGTTTCAAGCCGTGGGAATTTTTATCTAACATGGGAGCCTGGCCAGCCATATTGGCAGCCACACAA


>TRINITY_DN110289_c0_g1_i10 from sample A4 / Example unspliced isoform:
GCTTTGTGTTAGGCGGGCTTTGCACGTAGAAGAAGAATGGCCACGACAGTTCAGGCAGCTGCGGCTGCAGCAACAGCCAGTCTTTCATATGCAACTAGTAATGGTAATAATTACTATGCGACTCATATGCCATCCTTCATGGGTCTGAGGCCTTTCTCAACACAATTGAGAAGGAGGGAAGCTGCTGGGAATCGCATTGC
CAGTGCTAGTTCTTCGTCAACAAATAAAAACATTAAATTGTGGGGTGGATACATTAGGGCCCGAGCGTCCATCGATGAGGAAGAACTAGAAGAAGATATGGGGAGAAGGCAATGGCTAGCAGCAACAGCAGCAACCTCATTCGCTGTTCTCAATCTCCGCGAAGGAATCGCCAGGGCAGAAGACGTGGGTCTCTCTGAGT
GGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGACATTGCTTTTGTTCCAGGCGAGCCCACCCATGGTTTTCTCCTTGGTACAAGGCAAACGCTTTTGGAGACGAAGGATGGGGGGGCCTCCTGGGTTCCCCGCTCAATCCCTGCAGCAGAAGATGAAGACTTCAATTACAGATTCAATTCCATAAGT
TTCAAGGGAAAAGAGGGTTGGATAGTTGGAAAGCCAGCTATTTTACTGCACACTTCTGATGCTGGAGAAAACTGGGAGCGTATACCTTTAAGTTCTCAACTTCCTGGGGATCTGgtaaacaatatctagttgagattaagatttatgcatattgaaaggccttgtgttagagttgaccttcaattgtctatgctttcagG
TATAT
ATCCAAGCAACCGGTG




Intron 4 GTGCGCTCTG ... TTCATTATAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A117.02117024
A227.5942316
A314.1379013
A4104505
A511.433104
A615119021
A715.45186034
A815.65194036
A915.14185033
A1013.58210033



>TRINITY_DN123417_c0_g3_i9 from sample A2 / Example spliced isoform
AGGAATTCAAGTCCCTTGATGGTAAGCCGTCATTGTAACATCTCTCTTCGACTCCAGAACTCCCACAAGGTCTCTCTCTCTTCTTATGCTGATTTCAAAGCAAATTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTAA
CCACCGTAGGGTTTGGCGCCTCTATTGCCACAAACACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACGCGATTTTTAACGTAATCCGGTTCACATTTTATCTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCATG
GCCGAGGGATTTTCCAGTTCCGTCAAGAGCTTATGGTAGCAGCAAACCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAAGGAAGAAGACGTGGTCTCTTTGAATGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGACATTGCTTTTGTTACAGGCGAGCGCACCCTTACCAAACATTTC
CGGTACATACGCGTGTTAGTTTTTCGATTCGCTCGAAAGACGAGGAATCTGAAAGAGTGATCGCGAGCTGATATCTCATTGTGAAAAACTCCTACGGCGTAATTAGGGCTGAAAGGAAGCGGGACCCACTCAAGTTTTGTAGCCTCAAGTTCTCCAACAATCATGGGGTCGACGAAAACTCCGAAGAGGAAAAGAAGCGA
TATAAAACCTTCAGCAGAGACCTTAACCCCACTGGAGGAAGAAGCTCCTGATTTCCCTCGAGGAGGTGCGAGCGTGCTGAGTCGGTCGGAGATAGACGAAGCAAGAGCCGAGGCGGATGCCAAGTTCGAAGCCGAACAGAGAGGGTCTAAAAAGCGGAAGAAAACTAGACAGTCGAATGCTTTCGATCATGAGGGCGACG
CTCTTTTTCACAATGGGATCAGCGGAAAACTCCCGAAAATTGTCAAGATTCTTCGTTTCAAGAGTTTATCGACTGGAATGAAGCTGTGGGGGGTCATTGCTGAGGTGAATAGTAAGGATCTTGTCATAAGCCTCCCTGGTGGCCTGCGTGGGATTGTCACTGCAGATGAAGCATCTGATTACTTATCTGAGTTACAAAGC
ATAATGCCAAGTACTACACAAGATGTTATTATAAAGAAGAAGGCATTGCATGGGAAAGAAATCTCGAAATCCAGAAATGAAATTGGTAATTTGTCCATAGAGGATTTGTTCACAGTAGGACAGCTTGTTCCTTGTGTTGTCTGCAGACTGGGACGCGGTGAGGAAAATGAAACAATAAAGGACAGTAAAAGAATCTGCCT
GTCATTGCGACTTAGTTTGCTCCACAAAGGACTGACTATTGAGGCAGTTCAAGATGGAATGGTGATGATGGCTTGTGTGAAAAGTGTAGAAGATCATGGTTATGTCCTATCATTTGGGTTGCCTTCATTCTCTGGTTTCTTGCCGCACAGGGACAATAAAGCTGGGAGTACCGGATCAAAGTTGAAGAAGGGCCAGCTAG
TCCAAGGAGTTGTTTCAGGCATTGATAGAGTAACACGTGTGATTTCTATGAAAATTGATCCTACGCTGGTGAATAATAATATGATTAAAGACTATGGAGGATTATCAGTGGATCTTCTGGTACCTGGGACAATGGTTAATGCACGCGTGCAAGCAATATTGCGTAATGGATTGTTACTCTCGTTTCTTACCTATTTTACA
GGGACAGTTGATATCTTCCATTTGCAAGATCCATTTCCTAGTTCGAATTGGAAAGAAAAGTTCCCAGAAAATGCAAGGTTGAAAGCAAGGATTTTGTATGTAGATCCCACGACAAAGGCTGTTGGCTTGACACTTAATCCTCACCTCATTCAGAACAAGGTTCCCCCCATGGCTGTTAAATTAGGGGAAATTTTTGACGA
AGCACAGGTGGTTAGAGTTGATCATGCTTTTGGTGTCTTAGTGGAGCTTCCCTCGAAACCAGTTCCAACACCCGGCTTTGTAAATATTAAAGATGCTTCTGATGACGGTCTTCAAAAGTTGGAGAAGAGATTCAAAGAGGGCAGCAAAGTTCGTGCAAGAGTTCTGGGATTTAGATTCACTGAAGGGATAGCTCTAGCCA
CACTGAAGGCGTCTGTTTTAGAACAATCAGTTTTTCATTATTCAGATGTAAAGCCTGGCATGTTGGTGCAAGCTAAGGTTTCTAGAGTAGTACCATCTGGTGCAGTTCTACAGCTTTTAAACGGTCTAAAGGCTTTCTGCCCTCTTCAGCACATGTCAGAGTTTGGTGTTGCAAAGCCAACCGAGAGATTTCAGGTTGGA
GCAAAACTGCAGTTTCGTGTTTTGGGATGCAAGTCAAAGCGAATATCTGTGACACATAAGAAGACTTTGGTCACGTCAAAGTTGGAAACAGTTAGTAGTTATGATGCTGCTGAGGGCATTATCACTCATGGATGGATTGCTGGCATCACAAGTTATGGATGCGTTGTGAAATTCTACAATGGCATCAGAGGTTATGCACA
CAGGTCTGAACTCGGAATTGATCCAGGAAAAGAAGTGGGATCAGCATTTCATATTGGACAGGTTGTTAGGTGTAGAGTATTACGTTCGGATCCTGCATTTCATAACGTTCAGCTTAGTTTTATCATCTCCACTGACAGAGGCTTTCATGGATGTACAGTAGATAATGTAGATGACCTTAGACCTGGCACGGAGGTCCAGG
TGGATGAGGAAAATAAGCATATATCATTGGGCATGAAAGAAACTAGTGTACTTACATATAAAGAGTCTGTAGAGGAGGATGGTAGTGAGGACACTGTAAGGGATAATTCTGACCCGAGTTCTGAAGATAACAGGGAATACAAAATACAGGTTTTATCCAAAGAAAATGACAAGGTTGAAACTAGGGATCTGGCAGCTGAT
ATTTTTAATTCTCTTGAACTAGCAAGAGAAGTTGAATCAAGGGCGTCTATACCTCCCCTGGAAGTTAACTTTGATACAGACGCAAATGTGTCTGGGAGTGCAATTGTTGACAAGAGAAAGCATCTTGATAATGAGCCTTCTGAAATGGGAAGCAAGGATGACGAAAAGTTGACCAAGCGAGCAAAGAAAAAGCTTAAAGA
AAAGAGGGAGCTAGAGATCAGAGCTGCTGAAAAAAAACGTTTGGAAGGTGGCCAAGCACCAGATAGCGTGGATGAATATGAGCAGTTGGTGCGGACATCTCCAAATAGTAGCTTTGTTTGGATCAAGTACATGGCTTTCCTGTTATCCATTGCAGATGTTGAGAAAGCACGTGCCATTGCTGAAAGGGCTTTGCAAACAA
TAAATTTCAGGGAGGAGGAGGAAAAGCTAAATGTTTGGGTGGCTTTTTTTAATCTGGAAAATGTTTATGGCACTCCACCAAATGAGGCTGTTTTAAAAGTCTTCCAGAGAGCACTGCAGTATTGTGACCCCAAAAAAGTTCACCTTGCTTTACTGGGAATGTATGAACGGACTGGACAGCAAGAAATGGCTGATCAGCTA
CTTAAAGCCATGACCAAAAAGTTCAAAGCGTCTGCCAAGGTGTGGCTGAGGAATATGCAAAACCTGTTGAAGCAAGGAAGTGATGGAGCTGAAATGATTTTAAATCGTGCACTAGTTAGTCTTCCACGTCATAAGCACATTAAGTTTATTTCACGGGCTGCAGTTCTTGAATATAAAATTGGTTCAGCTGAAAGAGCACG
ATTACTGTTCGAAGGAGTGTTAAGGAATTACCCTAAGAGAACAGATCTGTGGAGCGTGTATCTTGACCAGGAAATTTGCCGAGGAGATGCATCTGTCATTCGATTACTTTTTGAAAGAGTCACTTGTCTGGACTTGCCCCCCAAGAAGATGAAGTTTCTCTTCAAGAAGTACCTTGATTATGAGAAATCTCAAGGTGAGG
AATCACGGATTGAATATGTGAAGAAAAAGGCAATGGAGTTTGTTAACAGCAAACTTGGTTGAGAAACTTCTTGATTATATATGTTTCAATGGATTGAATATGTCAGCATTAGAGATTCCAGTACTGGTTACATACCCAAAATGCTGGTATGGTTATGGGTATACTGGATACACGACAAATGTATCCTTGCTATGTATGCT
AATCTTCTTGCATGCAGATCCTAGGTTCTTTTATCCCTTACCTATATTGATTATTATTTGTACATGAGAATATGGGCTTGTCTTTTGTTCTATGAATGTGAATGGCATCTCGTGACCATGGCCCATGTCAAGGCACATCAGTGGTGGTATTAGCGCAAATTTGGACCTTGTTGGCCTGTGCCTAATATTTCGCTCGTGGC
TACTTAACTCTAGCTTACACATGATTCTACTGTAAAACACAACCACAATACTCCTCATTTTAAGAGTGTTCCAGCATAATGTATCAGTTGTGAATTATATTCTGCTAATTTCCA


>TRINITY_DN123417_c0_g3_i6 from sample A2 / Example unspliced isoform:
GTTTATGGCACTCCACCAAATgtgcgctctgattttcaactcaactcttgttttttaaactaggaagcatgcagtcttttatcgttgtaaaagtaatcatccattggatttaactatttggttattcattatagGAGGCTGTTTTAAAAGTCTTCCAGAGAGCACTGCAGTATTGTGACCCCAAAAAAGTTCACCTTGCT
TTACTGGGAATGTATGAACGGACTGGACAGCAAGAAATGGCTGATCAGCTACTTAAAGCCATGACCAAAAAGTTCAAAGCGTCTGCCAAGGTGTGGCTGAGGAATATGCAAAACCTGTTGAAGCAAGGAAGTGATGGAGCTGAAATGATTTTAAATCGTGCACTAGTTAGTCTTCCACGTCATAAGCACATTAAGTTTAT
TTCACGGGCTGCAGTTCTTGAATATAAAATTGGTTCAGCTGAAAGAGCACGATTACTGTTCGAAGGAGTGTTAAGGAATTACCCTAAGAGAACAGATCTGTGGAGCGTGTATCTTGACCAGGAAATTTGCCGAGGAGATGCATCTGTCATTCGATTACTTTTTGAAAGAGTCACTTGTCTGGACTTGCCCCCCAAGAAGA
TGAAGTTTCTCTTCAAGAAGTACCTTGATTATGAGAAATCTCAAGGTGAGGAATCACGGATTGAATATGTGAAGAAAAAGGCAATGGAGTTTGTTAACAGCAAACTTGGTTGAGAAACTTCTTGATTATATATGTTTCAATGGATTGAATATGTCAGCATTAGAGATTCCAGTACTGGTTACATACCCAAAATGCTGGTA
TGGTTATGGGTATACTGGATACACGACAAATGTATCCTTGCTATGTATGCTAATCTTCTTGCATGCAGATCCTAGGTTCTTTTATCCCTTACCTATATTGATTATTATTTGTACATGAGAATATGGGCTTGTCTTTTGTTCTATGAATGTGAATGGCATCTCGTGACCATGGCCCATGTCAAGGCACATCAGTGGTGGTA
TTAGCGCAAATTTGGACCTTGTTGGCCTGTGCCTAATATTTCGCTCGTGGCTACTTAACTCTAGCTTACACATGATTCTACTGTAAAACACAACCACAATACTCCTCATTTTAAGAGTGTTCCAGCATAATGTATCAGTTGTGAATTATATTCTGCTAATTTCCA




Intron 5 GTAGAGTGCA ... TGCAATGTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A119.5166257
A218.84561511
A317.4652913
A418.7539126
A521.572056
A617.261392137
A718.592084748
A819.892905985
A918.51965138
A1019.111634730



>TRINITY_DN47708_c1_g3_i2 from sample A7 / Example spliced isoform
AAGGAATTCAAGTCCCTTGATGGTAAGCCGTCATTGTAACATCTCTCTTCGACTCCAGAACTCCCACAGGGTCTCTCTCTCTTCTTATACTGATTTCAAAGCAATTTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTA
ACCACCGTAGGGTTTGGCGCCTCTATTGCCACAAACACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACGCGATTTTTAACGTAATCCGGTTCACATTTTATTTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCAT
GGCCGAGGGATTTTCCAGTTCCGTCAAGAGCTTATGGTAGCAGCAAACCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAAGGAAGAAGACGTGGTCTCTCTGAATGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGACATTGCTTTTGTTACAGGCGAGCGCACCCTTACCAAACATTT
CCGGTACATACGCGTGTTAGTTTTTCGATTCGCTCGAAAGACGAGGAATCTGAAAGAGTGATCGCGAGCTGATATCTCATTGTGAAAAACTCCTACGGCGTAATTAGGGCTGAAAGGAAGCGGGACCCACTCAAGTTTTGTAGCCTCAAGTTCTCCAACAATCATGGGGTCGACGAAAACTCCGAAGAGGAAAAGAAGCG
ATATAAAACCTTCAGCAGAGACCTTAACCCCACTGGAGGAAGAAGCTCCTGATTTCCCTCGAGGAGGTGCGAGCGTGCTGAGTCGGTCGGAGATAGACGAAGCAAGAGCCGAGGTGGATGCCAAGTTCGAAGCCGAGCAGAGAGGGTCTAAAAAGCGTAAGAAAACTAGACAGTCGAATGCTTTCGATCATGAGGGCGAC
GCTCTTTTTCACAATGGGATCAGCGGAAAACTCCCGAAAATTGTCAAGATTCTTCGTTTCAAGAGTTTATCGACTGGAATGAAGCTGTGGGGGGTCATTGCTGAGGTGAATAGTAAGGATCTTGTCATAAGCCTCCCTGGTGGCCTGCGTGGGATTGTCACTGCAGATGAAGCATCTGATTACTTATCTGAGTTACAAAG
CATAATGCCAAGTACTACACAAGATGTTATTATAAAGAAGAAGGCATTGCATGGGAAAGAAATCTCGAAATCCAGAAATGAAATTGGTAATTTGTCCATAGAGGATTTGTTCACAGTAGGACAGCTTGTTCCTTGTGTTGTCTGCAGACTGGGACGCGGTGAGGAAAATGAAACAATAAAGGACAGTAAAAGAATCTGCC
TGTCATTGCGACTTAGTTTGCTCCACAAAGGACTGACTATTGAGGCAGTTCAAGATGGAATGGTGATGATGGCTTGTGTGAAAAGTGTAGAAGATCATGGTTATGTCCTATCATTTGGGTTGCCTTCATTCTCTGGTTTCTTGCCGCACAGGGACAATAAAGCTGGGAGTACCGGATCAAAGTTGAAGAAGGGCCAGCTA
GTCCAAGGAGTTGTTTCAGGCATTGATAGAGTAACACGTGTGATTTCTATGAAAATTGATCCTACGCTGGTGAATAATAATATGATTAAAGACTATGGAGGATTATCAGTGGATCTTCTGGTACCTGGGACAATGGTTAATGCACGCGTGCAAGCAATATTGCGTAATGGATTGTTACTCTCGTTTCTTACCTATTTTAC
AGGGACAGTTGATATCTTCCATTTGCAAGATCCATTTCCTAGTTCGAATTGGAAAGAAAAGTTCCCAGAAAATGCAAGGTTGAAAGCAAGGATTTTGTATGTAGATCCCACGACAAAGGCTGTTGGCTTGACACTTAATCCTCACCTCATTCAGAACAAGGTCCCCCCCATGGCTGTTAAATTAGGGGAAATTTTTGACG
AAGCACAGGTGGTTAGAGTTGATCATGCTTTTGGTGTCTTAGTGGAGCTTCCCTCGAAACCAGTTCCAACACCCGGCTTTGTAAATATTAAAGATGCTTCTGATGACGGTCTTCAAAAGTTGGAGAAGAGATTCAAAGAGGGCAGCAAAGTTCGTGCAAGAGTTCTGGGATTTAGATTCACTGAAGGGATAGCTCTAGCC
ACACTGAAGGCGTCTGTTTTAGAACAATCAGTTTTTCATTATTCAGATGTAAAGCCTGGCATGTTGGTGCAAGCTAAGGTTTCTAGAGTAGTACCATCTGGTGCAGTTCTACAGCTTTTAAACGGTCTAAAGGCTTTCTGCCCTCTTCAGCACATGTCAGAGTTTGGTGTTGCAAAGCCAACCGAGAGATTTCAGGTTGG
AGCAAAACTGCAGTTTCGTGTTTTGGGATGCAAGTCAAAGCGAATATCTGTGACACATAAGAAGACTTTGGTCACGTCAAAGTTGGAAACAGTTAGTAGTTATGATGCTGCTGAGGGCATTATCACTCATGGATGGATTGCTGGCATCACAAGTTATGGATGCATTGTGAAATTCTACAATGGCATCAGAGGTTATGCAC
ACAGGTCTGAACTCGGTATTGATCCAGAAAAAGAAGTGGGATCAGCATTTCATATTGGACAGGTTGTTAGGTGTAGAGTATTACGTTCGGATCCTGCATTTCATAACGTTCAGCTTAGTTTTATCATCTCCACTGACAGAGGCTTTCATGGATGTACAGTAGATAATGTAGATGACCTTAGACCTGGCACGGAGGTCCAG
GTGGATGAGGAAAATAAGCGTATATCATTGGGCATGAAAGAAACTAGTGTACTTACATATAAAGAGTCTGTAGAGGAGGATGGTAGTGAGGACACTGTAAGGGATAATTCTGACCCGAGTTCTGAAGATAACAGGGAATACAAAATACAGGTTTTATCCAAAGAAAATGACAAGGTTGAAACTAGGGATCTGGCAGCTGA
TATTTTTAATTCTCTTGAACTAGCAAGAGAAGTTGAATCAAGGGCGTCTATACCTCCCCTGGAAGTTAACTTTGATACAGACGCAAATGTGTCTGGGAGTGCAATTGTTGACAAGAGAAAGCATCTTGATAATGAGCCTTCTGAAATGGGAAGCAAGGATGACGAAAAGTTGACCAAGCGAGCAAAGAAAAAGCTTAAAG
AAAAGAGGGAGCTAGAGATCAGAGCTGCTGAAAAAAAACGTTTGGAAGGTGGCCAAGCACCAGATAGCGTGGATGAATACGAGCAGTTGGTGCGGACATCTCCAAATAGTAGCTTTGTTTGGATCAAGTACATGGCTTTCCTGTTATCCATTGCAGATGTTGAGAAAGCACGTGCCATTGCTGAAAGGGCTTTGCAAACA
ATAAATTTCAGGGAGGAGGAGGAAAAGCTAAATGTTTGGGTGGCTTTTTTTAATCTGGAAAATGTTTATGGCACTCCACCAAATGAGGCTGTTTTAAAAGTCTTCCAGAGAGCACTGCAGTATTGTGACCCCAAAAAAGTTCACCTTGCTTTACTGGGAATGTATGAACGGACTGGACAGCAAGAAATGGCTGATCAGCT
ACTTAAAGCCATGACCAAAAAGTTCAAAGCGTCTGCCAAGGTGTGGCTGAGGAATATGCAAAACCTGTTGAAGCAAGGAAGTGATGGAGCTGAAATGATTTTAAATCGTGCACTAGTTAGTCTTCCACGTCATAAGCACATTAAGTTTATTTCACGGGCTGCAGTTCTTGAATATAAAATTGGTTCAGCTGAAAGAGCAC
GATTACTGTTCGAAGGAGTGTTAAGGAATTACCCTAAGAGAACAGATCTGTGGAGCGTGTATCTTGACCAGGAAATTTGCCGAGGAGATGCATCTGTCATTCGATTGCTTTTTGAAAGAGTCACTTGTCTGGACTTGCCCCCCAAGAAGATGAAGTTTCTCTTCAAGAAGTACCTTGATTATGAGAAATCTCAAGGTGAG
GAATCACGGATTGAATATGTGAAGAAAAAGGCAATGGAGTTTGTTAACAGCAAACTTGGTTGAGAAACTTCTTGATTATATATGTTTCAATGGATTGAATATGTCAGCATCAGAGATTCCAGTACTGGTTACATACCCAAAATGCTGGTATGGTTATGGGTATACTGGATACACGACAAATGTATCCTTGCTATGTATGC
TAATCTTCTTGCATGCAGATCCTAGGTTCTTTTATCCTTTACCTATATTAATTATTATTTGTACACGAGAATATGGGCTTGTCTTTTGTTCTATGAATGTGAATGGCATCTCGTGACCATGGCCCATGTCAAGGCACATCAGTGGTGGTATTAGCGCAAATTTGGACCTTGTTGGCCTGTGCCTAATATTTCGCTCGTGG
CTACTTAACTCTAGCTTACACATGATTCTACTGTAAAACACAACCACAATACTCCTCATTTTAAGAGTGTTCCAGCATAATGTATCAGTTGTGAATTATATTCTGCTAATTTCCAAGCATAAGAAATTCAATATCTCATCATTGTTACTATTTCTACAATCTGCCACAGCCAGAGAGGTAAACTTATAACTTGCCAAAAT
AATTAGTATTGTAACAAAGGACGTGGATACTTTTGTTGTTACATGACTCCATGTGAAACCTGTAAGAAGGATAAATCGTGAACAATTGGGTGAGAGGACCTGATACTAATGCAATCTATTTTTAGGGGTATTCAACATTTACTTGGTGCCAGTTTAGACTTTCAAATTTATAGATGTATTGGCG


>TRINITY_DN47708_c1_g3_i3 from sample A7 / Example unspliced isoform:
AAGGAATTCAAGTCCCTTGATGGTAAGCCGTCATTGTAACATCTCTCTTCGACTCCAGAACTCCCACAGGGTCTCTCTCTCTTCTTATACTGATTTCAAAGCAATTTCGTGCTCACATACCGCTGTCCCAGCTCCGTTTCTTTCGATGTGTCACTGAAAGTCCGAGCGAACTGTTCTTCTAAAAAACGCAAAACCTACTA
ACCACCGTAGGGTTTGGCGCCTCTATTGCCACAAACACTCCGACTCTCCGAGCACTTGCTTTGTTGTTGACTGTTTGCACGTTTAAACGCAAGACGCGATTTTTAACGTAATCCGGTTCACATTTTATTTTCGATTCCTCCTTTTGACGGCGGCCTAGTTTACTTGTCCAACATCCCGAGCTACTGGAGGAGAAGATCAT
GGCCGAGGGATTTTCCAGTTCCGTCAAGAGCTTATGGTAGCAGCAAACCTCATTCGCTACTCTCAATCTCCGCGAAGGAATCGCCAAGGAAGAAGACGTGGTCTCTCTGAATGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGACATTGCTTTTGTTACAGGCGAGCGCACCCTTACCAAACATTT
CCGGTACATACGCGTGTTAGTTTTTCGATTCGCTCGAAAGACGAGGAATCTGAAAGAGTGATCGCGAGCTGATATCTCATTGTGAAAAACTCCTACGGCGTAATTAGGGCTGAAAGGAAGCGGGACCCACTCAAGTTTTGTAGCCTCAAGTTCTCCAACAATCATGGGGTCGACGAAAACTCCGAAGAGGAAAAGAAGCG
ATATAAAACCTTCAGCAGAGACCTTAACCCCACTGGAGGAAGAAGCTCCTGATTTCCCTCGAGGAGGTGCGAGCGTGCTGAGTCGGTCGGAGATAGACGAAGCAAGAGCCGAGGTGGATGCCAAGTTCGAAGCCGAGCAGAGAGGGTCTAAAAAGCGTAAGAAAACTAGACAGTCGAATGCTTTCGATCATGAGGGCGAC
GCTCTTTTTCACAATGGGATCAGCGGAAAACTCCCGAAAATTGTCAAGATTCTTCGTTTCAAGAGTTTATCGACTGGAATGAAGCTGTGGGGGGTCATTGCTGAGGTGAATAGTAAGGATCTTGTCATAAGCCTCCCTGGTGGCCTGCGTGGGATTGTCACTGCAGATGAAGCATCTGATTACTTATCTGAGTTACAAAG
CATAATGCCAAGTACTACACAAGATGTTATTATAAAGAAGAAGGCATTGCATGGGAAAGAAATCTCGAAATCCAGAAATGAAATTGGTAATTTGTCCATAGAGGATTTGTTCACAGTAGGACAGCTTGTTCCTTGTGTTGTCTGCAGACTGGGACGCGGTGAGGAAAATGAAACAATAAAGGACAGTAAAAGAATCTGCC
TGTCATTGCGACTTAGTTTGCTCCACAAAGGACTGACTATTGAGGCAGTTCAAGATGGAATGGTGATGATGGCTTGTGTGAAAAGTGTAGAAGATCATGGTTATGTCCTATCATTTGGGTTGCCTTCATTCTCTGGTTTCTTGCCGCACAGGGACAATAAAGCTGGGAGTACCGGATCAAAGTTGAAGAAGGGCCAGCTA
GTCCAAGGAGTTGTTTCAGGCATTGATAGAGTAACACGTGTGATTTCTATGAAAATTGATCCTACGCTGGTGAATAATAATATGATTAAAGACTATGGAGGATTATCAGTGGATCTTCTGGTACCTGGGACAATGGTTAATGCACGCGTGCAAGCAATATTGCGTAATGGATTGTTACTCTCGTTTCTTACCTATTTTAC
AGGGACAGTTGATATCTTCCATTTGCAAGATCCATTTCCTAGTTCGAATTGGAAAGAAAAGTTCCCAGAAAATGCAAGGTTGAAAGCAAGGATTTTGTATGTAGATCCCACGACAAAGGCTGTTGGCTTGACACTTAATCCTCACCTCATTCAGAACAAGGTCCCCCCCATGGCTGTTAAATTAGGGGAAATTTTTGACG
AAGCACAGGTGGTTAGAGTTGATCATGCTTTTGGTGTCTTAGTGGAGCTTCCCTCGAAACCAGTTCCAACACCCGGCTTTGTAAATATTAAAGATGCTTCTGATGACGGTCTTCAAAAGTTGGAGAAGAGATTCAAAGAGGGCAGCAAAGTTCGTGCAAGAGTTCTGGGATTTAGATTCACTGAAGGGATAGCTCTAGCC
ACACTGAAGGCGTCTGTTTTAGAACAATCAGTTTTTCATTATTCAGATGTAAAGCCTGGCATGTTGGTGCAAGCTAAGGTTTCTAGAGTAGTACCATCTGGTGCAGTTCTACAGCTTTTAAACGGTCTAAAGGCTTTCTGCCCTCTTCAGCACATGTCAGAGTTTGGTGTTGCAAAGCCAACCGAGAGATTTCAGGTTGG
AGCAAAACTGCAGTTTCGTGTTTTGGGATGCAAGTCAAAGCGAATATCTGTGACACATAAGAAGACTTTGGTCACGTCAAAGTTGGAAACAGTTAGTAGTTATGATGCTGCTGAGGGCATTATCACTCATGGATGGATTGCTGGCATCACAAGTTATGGATGCATTGTGAAATTCTACAATGGCATCAGAGGTTATGCAC
ACAGGTCTGAACTCGGTATTGATCCAGAAAAAGAAGTGGGATCAGCATTTCATATTGGACAGGTTGTTAGGTGTAGAGTATTACGTTCGGATCCTGCATTTCATAACGTTCAGCTTAGTTTTATCATCTCCACTGACAGAGGCTTTCATGGATGTACAGTAGATAATGTAGATGACCTTAGACCTGGCACGGAGGTCCAG
GTGGATGAGGAAAATAAGCGTATATCATTGGGCATGAAAGAAACTAGTGTACTTACATATAAAGAGTCTGTAGAGGAGGATGGTAGTGAGGACACTGTAAGGGATAATTCTGACCCGAGTTCTGAAGATAACAGGGAATACAAAATACAGGTTTTATCCAAAGAAAATGACAAGGTTGAAACTAGGGATCTGGCAGCTGA
TATTTTTAATTCTCTTGAACTAGCAAGAGAAGTTGAATCAAGGGCGTCTATACCTCCCCTGGAAGTTAACTTTGATACAGACGCAAATGTGTCTGGGAGTGCAATTGTTGACAAGAGAAAGCATCTTGATAATGAGCCTTCTGAAATGGGAAGCAAGGATGACGAAAAGTTGACCAAGCGAGCAAAGAAAAAGCTTAAAG
AAAAGAGGGAGCTAGAGATCAGAGCTGCTGAAAAAAAACGTTTGGAAGGTGGCCAAGCACCAGATAGCGTGGATGAATACGAGCAGTTGGTGCGGACATCTCCAAATAGTAGCTTTGTTTGGATCAAGTACATGGCTTTCCTGTTATCCATTGCAGATGTTGAGAAAGCACGTGCCATTGCTGAAAGGGCTTTGCAAACA
ATAAATTTCAGGGAGGAGGAGGAAAAGCTAAATGTTTGGGTGGCTTTTTTTAATCTGGAAAATGTTTATGGCACTCCACCAAATGAGGCTGTTTTAAAAGTCTTCCAGAGAGCACTGCAGTATTGTGACCCCAAAAAAGTTCACCTTGCTTTACTGGGAATGTATGAACGGACTGGACAGCAAGAAATGGCTGATCAGCT
ACTTAAAGCCATGACCAAAAAGTTCAAAGCGTCTGCCAAGGTGTGGCTGAGGAATATGCAAAACCTGTTGAAGCAAGGAAGTGATGGAGCTGAAATGATTTTAAATCGTGCACTAGTTAGTCTTCCACGTCATAAGCACATTAAGTTTATTTCACGGGCTGCAGTTCTTGAATATAAAATTGGTTCAGCTGAAAGAGCAC
GATTACTGTTCGAAGGAGTGTTAAGGAATTACCCTAAGAGAACAGATCTGTGGAGCGTGTATCTTGACCAGgtagagtgcaaagtgcaagatgtattttcctatgagaaaaatgcatttcttgaagatatctttcagaaattcgatttgagatgcatattcacagtgggttacccaatgtgaatttattgttggatcagg
ctgtttagttctttactaaaactcttctttgctgcaagttgccattattcagtatattactgtactttttcttatgcaatgtag
GAAATTTGCCGAGGAGATGCATCTGTCATTCGATTGCTTTTTGAAAGAGTCACTTGTCTGGACTTGCCCCCCAAGAAGATGAAGTTTCTCTTCAAGAAGTACCTTGATTATGAGAA
ATCTCAAGGTGAGGAATCACGGATTGAATATGTGAAGAAAAAGGCAATGGAGTTTGTTAACAGCAAACTTGGTTGAGAAACTTCTTGATTATATATGTTTCAATGGATTGAATATGTCAGCATCAGAGATTCCAGTACTGGTTACATACCCAAAATGCTGGTATGGTTATGGGTATACTGGATACACGACAAATGTATCC
TTGCTATGTATGCTAATCTTCTTGCATGCAGATCCTAGGTTCTTTTATCCTTTACCTATATTAATTATTATTTGTACACGAGAATATGGGCTTGTCTTTTGTTCTATGAATGTGAATGGCATCTCGTGACCATGGCCCATGTCAAGGCACATCAGTGGTGGTATTAGCGCAAATTTGGACCTTGTTGGCCTGTGCCTAAT
ATTTCGCTCGTGGCTACTTAACTCTAGCTTACACATGATTCTACTGTAAAACACAACCACAATACTCCTCATTTTAAGAGTGTTCCAGCATAATGTATCAGTTGTGAATTATATTCTGCTAATTTCCAAGCATAAGAAATTCAATATCTCATCATTGTTACTATTTCTACAATCTGCCACAGCCAGAGAGGTAAACTTAT
AACTTGCCAAAATAATTAGTATTGTAACAAAGGACGTGGATACTTTTGTTGTTACATGACTCCATGTGAAACCTGTAAGAAGGATAAATCGTGAACAATTGGGTGAGAGGACCTGATACTAATGCAATCTATTTTTAGGGGTATTCAACATTTACTTGGTGCCAGTTTAGACTTTCAAATTTATAGATGTATTGGCG