sp|Q9LPW3|SCRM2_ARATH ----> Transcription factor SCREAM2
Intron 1 GTAGTAGTTC ... ACGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.57 | 11 | 24 | 3 |
| A2 | 84.21 | 3 | 16 | 1 |
| A3 | 66.67 | 9 | 18 | 0 |
| A4 | 74.07 | 7 | 20 | 0 |
| A5 | 90 | 1 | 9 | 0 |
| A6 | 87.5 | 1 | 7 | 0 |
| A7 | 57.14 | 6 | 8 | 0 |
| A8 | 87.5 | 1 | 7 | 0 |
| A9 | 50 | 1 | 1 | 0 |
| A10 | 100 | 0 | 1 | 1 |
>TRINITY_DN44113_c0_g1_i5 from sample A7 / Example spliced isoformGGCCATGGCACGGTACTTTCCCATTCAAGGACATACTACACAAAGGATTCCATGAGATTGGGGGTTCGATTATCCAGAGAGATAGACTATTTATGTGAAGAGCATCCAGAGATTATACTGCTATGCTTACCTATCATTTCGGTGCAAGTCGTGTTGAAATCGATGCCCAACACATGAAGAGAATCACACTTTCCATCGAT
GTCTTGTCCATGAAAGAGTTCCTGCCCTAGTTGTTCTGACAAGTTTTGTTGGATGAATTTGATGTGTTGTACACTCATCTCATGTTCAACCTCGAGAGTGGCAAGGACAGATGGGGTGGCCTCCCTTTCATTTACAACAAGGTCGGGGTTTTTAACGAGGGTTTGAGAGCCAAGCATTGCAACTATTTCCTCAACATATT
TTCTCGCAAGGGTTGCCGGATTGTTGAGATCTCGTGTGCAGAACAATATCGCTCTACCACGGAGAGTCAATTCATTAATCACACTGCTGGGAGGATGCTGGGAATGTTGGGCTTGGAGTCCACTCCAATTGCTAGCAAGGGTTTTGAGATATTACTAGAAGCGGCTCGGAATACTATAGGGGATAGTTTTGATATTTATT
ACGGGCTCTTCATGTATAATGTCAATTCGATTGAACAAATTGAGAGGTTAGATATGGCATTCGATTCAGTCAAGAAGCAGCTGGTTGGGTGGTTACATGCCATACTCAAGGGCAGAGGCATACACAGAGGCATATTGCTCTTTCTACCATAGAGGCAGAGTATCGAGGAGCTGCTAATGCCCCTCTGGTAACCGAGCTTA
AGTCCTCAGATGGACAGGGCCTCAACAATGGCAGATGTTTTTGAGTACATGAAGGAGATTCTGCAACGTATTAAAGATCTCCATATCGAGCTCATGTCAGGTTCCTCCAACTTGAAGCCCTTGGCACCTGCACTGCCAGAGTTTTCTTGCATAATGAACCAAGGGTATCAAGCTTCATTGCTTAATCCAGAATTAAACCC
AGCAAAGGTGGACGTGCGGGCAAGAGAAGGGAAGTCCCTAAACATCCACATGTTCTGTTCCAGAAATACCGACTTACTTCTATCCACAATCAGGACTCTGGATGGACTTGGTCTTGAGATTAAGCACGCAACCATAAGCTACCAAGGTGGATTTTCACTAGATGTATTTCAAGCAGAGCAATCCACGAGGGTAGATTTTA
CAGCCGAGGAGATCAAAGCGTTGCTACTGCATATTGGAGGATATGTCACTGGAATGTACCTAAAGCATCTAAGTACATTTCTTCAATTTCTTCTTCGACTGAAAAGTGTAATATTGTCTTAATCAAACTTCATATCAGAAGCCATGGAATTTCCATAGCGGTAGCATTTTCTTGGAGTGGCTTCTGATTTAGAAGATGCC
AAGTAGGCTTAGATTTTCCTTAGATATCCATATTTCAAATGGTTGATAATATTTTACAGTTGTCATTTTGTTGAGTGTTCTGCCTGAATTAGTAATCTTCAGTGAGTCATGTGAAGGCCAAGCTTTAGTCGAGGGATGGTTTGTCTCAGAGATTCATGGTGAGAATGAGTTTGTTAGAGATGCTCTTGGATTATAGCTAC
TCCTACAAGGGCGTTGTCTGCGATGTACATTACAGAGATATCCTTTTTTTTAAGTCTATTTTTGAATATTCTCATTCACGAGTTATATATAATATGATCCAGTAAAAGCTCATCATTGCGTTACAAGAGGCCAAACTAGCACTATGGTACTAGAAAAACCCTACATTTAGATTAGCAGAGAGGAGGACGAACAAGATGCT
CCTCCAAAACCAGATATTTGATAGATCTTAACTTGATGCATACTATAGCTTCCCATCATGAGGGTTCTATTGTGAGAGCAAAGAACAAGCTGCAATTTGATTGGAAAAAATTCAAGGAATAGAAGCCAAGTATTCAAAATTGGAATCTGCTAATTACAAAGCATGATATTCAAGGACTCTCGGTTATATTTTGCTGCCCT
AATTTCAGAATGATGCATCTATGACCCATTTTGAACGCTGGAGCAGATAAGTTATACGGATATTGATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGGAACCATTAAACTTGATGAATGTGAAGGCCATTTTGGA
CATATTCGTCTTCCAATTCCAGTTTTTCATCCTTCTCACATTCCGTCTAACTCCATTTGATATCATCCATCTAGAACATGAAGCTTGCCTCGCATGGAGATGTCAAACTGAATGCATAATCATATTCAATCCATTGTGAGAGGCGTAGAAAGTTTATTTTGCTGTAATAGTGATTTTTGAACCTGCCATAGTTGAATAAT
CCAGAACAATAGAGGAATTTTATAGCAGTGGCCTGGAAAATGAGGGTTGAGCATTCTAGAGCTGAGTTCATAAACTATGCTTGCATCAGGACATAGTTTCGGTTTTAATGGATGAATATCACCAATCCTTGCTTTCCATTTTCTGAGTTTGGGAGATGCAAGAGAGCAACTGTTTTATACTAAACTAGGCATTAGATTGC
CAACAAAGACCCAGAATACAGAAAGAGTGGGCTTTCCTAGCACAATGTGGTTCTTTTGTTTTGCTATGGCTTCCTCTAAGGAGATAACCTAAGGAA
>TRINITY_DN44113_c0_g1_i1 from sample A7 / Example unspliced isoform:TTATCCATTATCGTTTGAACAACACTTGATCAAAAGACTTTTAAATCTCTGTAAAGGTTATTGTGTCTTCATGGGAATCTACTGATACATTTGGTAATGGTACTAGGTAACCAATCTCTTACATCAAACAATTATTCACAGTTATATAAAGTTACAAAGTGTGCATGTTCTACTGTATTGAAGTTGCAAGAAAACCTCCA
TTCATATTCAATAGCTATTTTTTTGTGTCCAAATGCAGATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGGAACCATTAAACTTGATGAATGTGAAGGCCATTTTGGACATATTCGTCTTCCAATTCCAGTTTTT
CATCCTTCTCACATTCCGgtagtagttcgtattctaaagagcatttgtctaaactgtttcaagcttaaaaagaagaaaaatgttagagcagctgaaaagaggaaaatattgtagatttctgcaaaatttgtttcatatttcattaaaattttagtatgtttgaagctaatgatggggttaaaatgtgaatttcgtgccac
ctttcatcttttgaatgtttaccttggacgttttcagTCTAACTCCATTTGATATCATC
Intron 2 ATATCCTTTT ... TGATGCATAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.62 | 1 | 3 | 8 |
| A2 | 68.42 | 3 | 5 | 8 |
| A3 | 45.45 | 6 | 4 | 6 |
| A4 | 66.67 | 1 | 0 | 4 |
| A5 | 46.67 | 8 | 6 | 8 |
| A6 | 33.33 | 9 | 7 | 2 |
| A7 | 51.52 | 8 | 12 | 5 |
| A8 | 63.64 | 8 | 20 | 8 |
| A9 | 86.67 | 1 | 8 | 5 |
| A10 | 31.25 | 11 | 7 | 3 |
>TRINITY_DN44113_c0_g1_i3 from sample A7 / Example spliced isoformGGCCATGGCACGGTACTTTCCCATTCAAGGACATACTACACAAAGGATTCCATGAGATTGGGGGTTCGATTATCCAGAGAGATAGACTATTTATGTGAAGAGCATCCAGAGATTATACTGCTATGCTTACCTATCATTTCGGTGCAAGTCGTGTTGAAATCGATGCCCAACACATGAAGAGAATCACACTTTCCATCGAT
GTCTTGTCCATGAAAGAGTTCCTGCCCTAGTTGTTCTGACAAGTTTTGTTGGATGAATTTGATGTGTTGTACACTCATCTCATGTTCAACCTCGAGAGTGGCAAGGACAGATGGGGTGGCCTCCCTTTCATTTACAACAAGGTCGGGGTTTTTAACGAGGGTTTGAGAGCCAAGCATTGCAACTATTTCCTCAACATATT
TTCTCGCAAGGGTTGCCGGATTGTTGAGATCTCGTGTGCAGAACAATATCGCTCTACCACGGAGAGTCAATTCATTAATCACACTGCTGGGAGGATGCTGGGAATGTTGGGCTTGGAGTCCACTCCAATTGCTAGCAAGGGTTTTGAGATATTACTAGAAGCGGCTCGGAATACTATAGGGGATAGTTTTGATATTTATT
ACGGGCTCTTCATGTATAATGTCAATTCGATTGAACAAATTGAGAGGTTAGATATGGCATTCGATTCAGTCAAGAAGCAGCTGGTTGGGTGGTTACATGCCATACTCAAGGGCAGAGGCATACACAGAGGCATATTGCTCTTTCTACCATAGAGGCAGAGTATCGAGGAGCTGCTAATGCCCCTCTGGTAACCGAGCTTA
AGTCCTCAGATGGACAGGGCCTCAACAATGGCAGATGTTTTTGAGTACATGAAGGAGATTCTGCAACGTATTAAAGATCTCCATATCGAGCTCATGTCAGGTTCCTCCAACTTGAAGCCCTTGGCACCTGCACTGCCAGAGTTTTCTTGCATAATGAACCAAGGGTATCAAGCTTCATTGCTTAATCCAGAATTAAACCC
AGCAAAGGTGGACGTGCGGGCAAGAGAAGGGAAGTCCCTAAACATCCACATGTTCTGTTCCAGAAATACCGACTTACTTCTATCCACAATCAGGACTCTGGATGGACTTGGTCTTGAGATTAAGCACGCAACCATAAGCTACCAAGGTGGATTTTCACTAGATGTATTTCAAGCAGAGCAATCCACGAGGGTAGATTTTA
CAGCCGAGGAGATCAAAGCGTTGCTACTGCATATTGGAGGATATGTCACTGGAATGTACCTAAAGCATCTAAGTACATTTCTTCAATTTCTTCTTCGACTGAAAAGTGTAATATTGTCTTAATCAAACTTCATATCAGAAGCCATGGAATTTCCATAGCGGTAGCATTTTCTTGGAGTGGCTTCTGATTTAGAAGATGCC
AAGTAGGCTTAGATTTTCCTTAGATATCCATATTTCAAATGGTTGATAATATTTTACAGTTGTCATTTTGTTGAGTGTTCTGCCTGAATTAGTAATCTTCAGTGAGTCATGTGAAGGCCAAGCTTTAGTCGAGGGATGGTTTGTCTCAGAGATTCATGGTGAGAATGAGTTTGTTAGAGATGCTCTTGGATTATAGCTAC
TCCTACAAGGGCGTTGTCTGCGATGTACATTACAGAGTATAGCTTCCCATCATGAGGGTTCTATTGTGAGAGCAAAGAACAAGCTGCAATTTGATTGGAAAAAATTCAAGGAATAGAAGCCAAGTATTCAAAATTGGAATCTGCTAATTACAAAGCATGATATTCAAGGACTCTCGGTTATATTTTGCTGCCCTAATTTC
AGAATGATGCATCTATGACCCATTTTGAACGCTGGAGCAGATAAGTTATACGGATATTGATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGGAACCATTAAACTTGATGAATGTGAAGGCCATTTTGGACATATT
CGTCTTCCAATTCCAGTTTTTCATCCTTCTCACATTCCGATTATGAATGATGTGACAAAAGTACTACCGGAGAAAAAACCTATTAGTTATGGGACGGATTTACAGGGTACGAAAGCTAATAGTTCGATAAATTTCAAAAGGAAGAACTCCGATGCAATTAGTATTGATGCAAGTTCTAACTATGAAGAGGATCCTTTATT
ATGTTCTTTGATTCCAATAAGAACTTATGTGCAGCGCACTCCTTGCACGCC
>TRINITY_DN44113_c0_g1_i5 from sample A7 / Example unspliced isoform:GGCCATGGCACGGTACTTTCCCATTCAAGGACATACTACACAAAGGATTCCATGAGATTGGGGGTTCGATTATCCAGAGAGATAGACTATTTATGTGAAGAGCATCCAGAGATTATACTGCTATGCTTACCTATCATTTCGGTGCAAGTCGTGTTGAAATCGATGCCCAACACATGAAGAGAATCACACTTTCCATCGAT
GTCTTGTCCATGAAAGAGTTCCTGCCCTAGTTGTTCTGACAAGTTTTGTTGGATGAATTTGATGTGTTGTACACTCATCTCATGTTCAACCTCGAGAGTGGCAAGGACAGATGGGGTGGCCTCCCTTTCATTTACAACAAGGTCGGGGTTTTTAACGAGGGTTTGAGAGCCAAGCATTGCAACTATTTCCTCAACATATT
TTCTCGCAAGGGTTGCCGGATTGTTGAGATCTCGTGTGCAGAACAATATCGCTCTACCACGGAGAGTCAATTCATTAATCACACTGCTGGGAGGATGCTGGGAATGTTGGGCTTGGAGTCCACTCCAATTGCTAGCAAGGGTTTTGAGATATTACTAGAAGCGGCTCGGAATACTATAGGGGATAGTTTTGATATTTATT
ACGGGCTCTTCATGTATAATGTCAATTCGATTGAACAAATTGAGAGGTTAGATATGGCATTCGATTCAGTCAAGAAGCAGCTGGTTGGGTGGTTACATGCCATACTCAAGGGCAGAGGCATACACAGAGGCATATTGCTCTTTCTACCATAGAGGCAGAGTATCGAGGAGCTGCTAATGCCCCTCTGGTAACCGAGCTTA
AGTCCTCAGATGGACAGGGCCTCAACAATGGCAGATGTTTTTGAGTACATGAAGGAGATTCTGCAACGTATTAAAGATCTCCATATCGAGCTCATGTCAGGTTCCTCCAACTTGAAGCCCTTGGCACCTGCACTGCCAGAGTTTTCTTGCATAATGAACCAAGGGTATCAAGCTTCATTGCTTAATCCAGAATTAAACCC
AGCAAAGGTGGACGTGCGGGCAAGAGAAGGGAAGTCCCTAAACATCCACATGTTCTGTTCCAGAAATACCGACTTACTTCTATCCACAATCAGGACTCTGGATGGACTTGGTCTTGAGATTAAGCACGCAACCATAAGCTACCAAGGTGGATTTTCACTAGATGTATTTCAAGCAGAGCAATCCACGAGGGTAGATTTTA
CAGCCGAGGAGATCAAAGCGTTGCTACTGCATATTGGAGGATATGTCACTGGAATGTACCTAAAGCATCTAAGTACATTTCTTCAATTTCTTCTTCGACTGAAAAGTGTAATATTGTCTTAATCAAACTTCATATCAGAAGCCATGGAATTTCCATAGCGGTAGCATTTTCTTGGAGTGGCTTCTGATTTAGAAGATGCC
AAGTAGGCTTAGATTTTCCTTAGATATCCATATTTCAAATGGTTGATAATATTTTACAGTTGTCATTTTGTTGAGTGTTCTGCCTGAATTAGTAATCTTCAGTGAGTCATGTGAAGGCCAAGCTTTAGTCGAGGGATGGTTTGTCTCAGAGATTCATGGTGAGAATGAGTTTGTTAGAGATGCTCTTGGATTATAGCTAC
TCCTACAAGGGCGTTGTCTGCGATGTACATTACAGAGatatccttttttttaagtctatttttgaatattctcattcacgagttatatataatatgatccagtaaaagctcatcattgcgttacaagaggccaaactagcactatggtactagaaaaaccctacatttagattagcagagaggaggacgaacaagatgct
cctccaaaaccagatatttgatagatcttaacttgatgcatacTATAGCTTCCCATCATGAGGGTTCTATTGTGAGAGCAAAGAACAAGCTGCAATTTGATTGGAAAAAATTCAAGGAATAGAAGCCAAGTATTCAAAATTGGAATCTGCTAATTACAAAGCATGATATTCAAGGACTCTCGGTTATATTTTGCTGCCCT
AATTTCAGAATGATGCATCTATGACCCATTTTGAACGCTGGAGCAGATAAGTTATACGGATATTGATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGGAACCATTAAACTTGATGAATGTGAAGGCCATTTTGGA
CATATTCGTCTTCCAATTCCAGTTTTTCATCCTTCTCACATTCCGTCTAACTCCATTTGATATCATCCATCTAGAACATGAAGCTTGCCTCGCATGGAGATGTCAAACTGAATGCATAATCATATTCAATCCATTGTGAGAGGCGTAGAAAGTTTATTTTGCTGTAATAGTGATTTTTGAACCTGCCATAGTTGAATAAT
CCAGAACAATAGAGGAATTTTATAGCAGTGGCCTGGAAAATGAGGGTTGAGCATTCTAGAGCTGAGTTCATAAACTATGCTTGCATCAGGACATAGTTTCGGTTTTAATGGATGAATATCACCAATCCTTGCTTTCCATTTTCTGAGTTTGGGAGATGCAAGAGAGCAACTGTTTTATACTAAACTAGGCATTAGATTGC
CAACAAAGACCCAGAATACAGAAAGAGTGGGCTTTCCTAGCACAATGTGGTTCTTTTGTTTTGCTATGGCTTCCTCTAAGGAGATAACCTAAGGAA
Intron 3 GTAATGAAAT ... ATGTCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 4 | 2 | 2 |
| A2 | 42.86 | 8 | 8 | 4 |
| A3 | 20 | 2 | 1 | 0 |
| A4 | 33.33 | 3 | 1 | 2 |
| A5 | 28.57 | 5 | 3 | 1 |
| A6 | 26.32 | 7 | 4 | 1 |
| A7 | 23.82 | 17.6 | 3 | 8 |
| A8 | 31.43 | 12 | 6 | 5 |
| A9 | 14.29 | 6 | 2 | 0 |
| A10 | 20 | 6 | 1 | 2 |
>TRINITY_DN41767_c0_g1_i2 from sample A8 / Example spliced isoformGAATTTTCTTATGCAAGTTTGTTCAAGTCTGTGTGACAGTGAAGAAACCCTGAATGGAAAGGTTGCATTTATCCTAGCATTCAAGGCCGATATTCATCCATCTCAAGCAACATTCTTGCTTCAACTTTGTATCCTATCAGCCTGGTTTCCATTGATTGACACATATATATCACAGAAGGTGAAACGAAAATAAAATCTCC
TACATTTCTCAGTGACCGTGAAGTCCTCATTCTTCTAGTATTGAATGGGTTTTCGCTTGCTTCATTGAATATTTCTTTCATGGCTCTATTTTTGTTTTCCACGCTGGAAGCTCACCAATGTCAATCAACTTGTTCTTCCATTGTAGGCTTTTGTGAATTTATTATTGTCTGTCAAATTAAAACTTATCAGAGACTATCAA
TTTCATGTTTTTCATTTCTTTTGTTTGCAAACTTTTGTGGATCTTCTATTGTTTATCACAGTGGAATATCACATGTCCCATTCCTTATGTTTACAAGCTTAATGCATATTCTATTATTTTTTCTCATTGTTGGTTTCCTTATAAGCTCATGGGTGGCTGATTGGCTGAGAAAGAGAACCCTTTCTCATATCCTTTGTCTT
GAAATGAAGGTGGACGTGCGGGCAAGAGAAGGGAAGTCCCTAAACATCCACATGTTCTGTTCCAGAAATACCGACTTACTTCTATCCACAATCAGGACTCTGGATGGACTTGGTCTTGAGATTAAGCACGCAACCATAAGCTACCAAGGTGGATTTTCACTAGATGTATTTCAAGCAGAGCAATCCACGAGGGTAGATTT
TACAGCCGAGGAGATCAAAGCGTTGCTACTGCATATTGGAGGATATGTCACTGGAATGTACCTAAAGCATCTAAGTACATTTCTTCAATTTCTTCTTCGACTGAAAAGTGTAATATTGTCTTAATCAAACTTCATATCAGAAGCCATGGAATTTCCATAGCGGTAGCATTTTCTTGGAGTGGCTTCTGATTTAGAAGATG
CCAAGGAGGCTTAGATTTTCCTTAGATATCCATATTTCAAATGGTTGATAATATGTTACAGTTGTCATTTTGTTGAGTGTTCTGCCTGAATTAGTAATCTTCAGTGAGTCATGTGAAGGCCAAGCTTTAGTCGAGGGATGGTTTGTCTCAGAGATTCATGGTGAGAATGAGTTTGTTAGAGATGCTCTTGGATTATAGCT
ACTCCTACAAGGGCGTTGTCTGCGATGTACATTACAGAGTATAGCTTCCCATCATGAGGGTTCTATTGTGAGAGCAAAGAACAAGCTGCAATTTGATTGGAAAAAATTCAAGGAATAGAAGCCAAGTATTCAAAATTGGAATCTGCTAATTACAAAGCATGATATTCAAGGACTCTCGGTTATATTTTGCTGCCCTAATT
TCAGAATGATGCATCTATGACCCATTTTGAACGCTGGAGCAGATAAGTTATACGGATATTGGTAAGTAGTTTTGTTTCTTTTTATTTAGGTGCAAGTTTCTTCTAAGTGGTTAACGGTGGTCATGTACTAATCCAGTGTGCACTCTATTGATTAATCAATTGTTATATACGTTTATATTATATACAATAGCAGTTGACAA
CAGGAATACGACTGCGTTTTAATGCTAGAAAGTTGTATTGTATATATTATCCATTATCGTTTGAACAACACTTGATCAAAAGACTTTTAAATCTCTGTAAAGGTTATTGTGTCTTCATGGGAATCTACTGATACATTTGGTAATGGTACTAGGTAACCAATCTCTTACATCAAACAATTATTCACAGTTATATAAAGTTA
CAAAGTGTGCATGTTCTACTGTATTGAAGTTGCAAGAAAACCTCCATTCATATTCAATAGCTATTTTTTTGTGTCCAAATGCAGATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGGAACCATTAAACTTGATGA
ATGTGAAGGCCATTTTGGACATATTCGTCTTCCAATTCCAGTTTTTCATCCTTCTCACATTCCGGTAGTAGTTCGTATTCTAAAGAGCATTTGTCTAAACTGTTTCAAGCTTAAAAAGAAGAAAAATGTTAGAGCAGCTGAAAAGAGGAAAATATTGTAGATTTCTGCAAAATTTGTTTCATATTTCATTAAAATTTTAG
TATGTTTGAAGCTAATGATGGGGTTAAAATGTGAATTTCGTGCCACCTTTCATCTTTTGAATGTTTACCTTGGACGTTTTCAGTCTAACTCCATTTGATATCATCCATCTAGAACATGAAGCTTGCCTCGCATGGAGATGTCAAACTGAATGCATAATCATATTCAATCCATTGTGAGAGGCGTAGAAAGTTTATTTTGC
TGTAATAGTGATTTTTGAACCTGCCATAGTTGAATAATCCAGAACAATAGAGGAATTTTATAGCAGTGGCCTGGAAAATGAGGGTTGAGCATTCTAGAGCTGAGTTCATAAACTATGCTTGCATCAGGACATAGTTTCGGTTTTAATGGATGAATATCACCAATCCTTGCTTTCCATTTTCTGAGTTTGGGAGATGCAAG
AGAGCAACTGTTTTATACTAAACTAGGCATTAGATTGCCAACAAAGACCCAGAATACAGAAAGAGTGGGCTTTCCTAGAACAATGTGTTTCTGTTGTTTTGCTATGGCTTCCTCTAAGGAGATAACCTAAGGAAATGACTTATTTCTTCTTTTATTGAATCGTTCAATA
>TRINITY_DN41767_c0_g1_i9 from sample A8 / Example unspliced isoform:GTTAGATATGGCATTCGATTCAGTCAAGAAGCAGTTGGTTGGGTGGTTACATGCCATACTCAAGGGCAGAGGCATACACAGAGGCATATTGCTCTTTCTACCATAGAGGCAGAGTATCGAGGAGCTGCTAATGCCCCTCTGGTAACCGAGCTTAAGTCCTCAGCAGATGGACAGGGCCTCAACAATGGCAGATGTTTTTG
AGTACATGAAGGAGATTCTGCAACGTATTAAAGATCTCCATATCGAGCTCATGTCAGGTTCCTCCAACTTGAAGCCCTTGGCACCTGCACTGCCAGAGTTTTCTTGCATAATGAACCAAGGGTATCAAGCTTCATTGCTTAATCCAGAATTAAACCCAGCAAAGGTGGACGTGCGGGCAAGAGAAGGGAAGTCCCTAAAC
ATCCACATGTTCTGTTCCAGAAATACCGACTTACTTCTATCCACAATCAGGACTCTGGATGGACTTGGTCTTGAGATTAAGCACGCAACCATAAGCTACCAAGGTGGATTTTCACTAGATGTATTTCAAGCAGAGgtaatgaaatatttcaattgattattaattacacttgattaggtaatggtctaactctgttgttt
tgcacatgtcatcagCAATCCACGAGGGTAGATTTTACAGCCGAGGAGATCAAAGCGTTGCTACTGCATATTGGAGGATATGTCACTGGAATGTACCTAAAGCATCTAAGTACATTTCTTCAATTTCTTCTTCGACTGAAAAGTGTAATATTGTCTTAATCAAACTTCATATCAGAAGCCATGGAATTTCCATAGCGGTA
GCATTTTCTTGGAGTGGCTTCTGATTTAGAAGATGCCAAGGAGGCTTAGATTTTCCTTAGATATCCATATTTCAAATGGTTGATAATATGTTACAGTTGTCATTTTGTTGAGTGTTCTGCCTGAATTAGTAATCTTCAGTGAGTCATGTGAAGGCCAAGCTTTAGTCGAGGGATGGTTTGTCTCAGAGATTCATGGTGAG
AATGAGTTTGTTAGAGATGCTCTTGGATTATAGCTACTCCTACAAGGGCGTTGTCTGCGATGTACATTACAGAGATATCCTTTTTTTTAAGTCTATTTTTGAATATTCTCATTCACGAGTTATATATAATATGATCCAGTAAAAGCTCATCATTGCGTTACAAGAGGCCAAACTAGCACTATGGTACTAGAAAAACCCTA
CATTTAGATTAGCAGAGAGGAGGACGAACAAGATGCTCCTCCAAAACCAGATATTTGATAGATCTTAACTTGATGCATACTATAGCTTCCCATCATGAGGGTTCTATTGTGAGAGCAAAGAACAAGCTGCAATTTGATTGGAAAAAATTCAAGGAATAGAAGCCAAGTATTCAAAATTGGAATCTGCTAATTACAAAGCA
TGATATTCAAGGACTCTCGGTTATATTTTGCTGCCCTAATTTCAGAATGATGCATCTATGACCCATTTTGAACGCTGGAGCAGATAAGTTATACGGATATTGATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGG
AACCATTAAACTTGATGAATGTGAAGGCCATTTTGGACATATTCGTCTTCCAATTCCAGTTTTTCATCCTTCTCACATTCCGGTAGTAGTTCGTATTCTAAAGAGCATTTGTCTAAACTGTTTCAAGCTTAAAAAGAAGAAAAATGTTAGAGCAGCTGAAAAGAGGAAAATATTGTAGATTTCTGCAAAATTTGTTTCAT
ATTTCATTAAAATTTTAGTATGTTTGAAGCTAATGATGGGGTTAAAATGTGAATTTCGTGCCACCTTTCATCTTTTGAATGTTTACCTTGGACGTTTTCAGTCTAACTCCATTTGATATCATCCATCTAGAACATGAAGCTTGCCTCGCATGGAGATGTCAAACTGAATGCATAATCATATTCAATCCATTGTGAGAGGC
GTAGAAAGTTTATTTTGCTGTAATAGTGATTTTTGAACCTGCCATAGTTGAATAATCCAGAACAATAGAGGAATTTTATAGCAGTGGCCTGGAAAATGAGGGTTGAGCATTCTAGAGCTGAGTTCATAAACTATGCTTGCATCAGGACATAGTTTCGGTTTTAATGGATGAATATCACCAATCCTTGCTTTCCATTTTCT
GAGTTTGGGAGATGCAAGAGAGCAACTGTTTTATACTAAACTAGGCATTAGATTGCCAACAAAGACCCAGAATACAGAAAGAGTGGGCTTTCCTAGAACAATGTGTTTCTGTTGTTTTGCTATGGCTTCCTCTAAGGAGATAACCTAAGGAAATGACTTATTTCTTCTTTTATTGAATCGTTCAATA
Intron 4 GTAAGTAGTT ... CCAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.67 | 8 | 5 | 9 |
| A2 | 41.18 | 5 | 1 | 6 |
| A3 | 70 | 3 | 10 | 4 |
| A4 | 50 | 11 | 10 | 12 |
| A5 | 46.67 | 8 | 8 | 6 |
| A6 | 42.86 | 2 | 1 | 2 |
| A7 | 45.45 | 6 | 4 | 6 |
| A8 | 28.21 | 14 | 6 | 5 |
| A9 | 14.29 | 3 | 1 | 0 |
| A10 | 20 | 2 | 1 | 0 |
>TRINITY_DN41767_c0_g1_i3 from sample A8 / Example spliced isoformGAATTTTCTTATGCAAGTTTGTTCAAGTCTGTGTGACAGTGAAGAAACCCTGAATGGAAAGGTTGCATTTATCCTAGCATTCAAGGCCGATATTCATCCATCTCAAGCAACATTCTTGCTTCAACTTTGTATCCTATCAGCCTGGTTTCCATTGATTGACACATATATATCACAGAAGGTGAAACGAAAATAAAATCTCC
TACATTTCTCAGTGACCGTGAAGTCCTCATTCTTCTAGTATTGAATGGGTTTTCGCTTGCTTCATTGAATATTTCTTTCATGGCTCTATTTTTGTTTTCCACGCTGGAAGCTCACCAATGTCAATCAACTTGTTCTTCCATTGTAGGCTTTTGTGAATTTATTATTGTCTGTCAAATTAAAACTTATCAGAGACTATCAA
TTTCATGTTTTTCATTTCTTTTGTTTGCAAACTTTTGTGGATCTTCTATTGTTTATCACAGTGGAATATCACATGTCCCATTCCTTATGTTTACAAGCTTAATGCATATTCTATTATTTTTTCTCATTGTTGGTTTCCTTATAAGCTCATGGGTGGCTGATTGGCTGAGAAAGAGAACCCTTTCTCATATCCTTTGTCTT
GAAATGAAGGTGGACGTGCGGGCAAGAGAAGGGAAGTCCCTAAACATCCACATGTTCTGTTCCAGAAATACCGACTTACTTCTATCCACAATCAGGACTCTGGATGGACTTGGTCTTGAGATTAAGCACGCAACCATAAGCTACCAAGGTGGATTTTCACTAGATGTATTTCAAGCAGAGCAATCCACGAGGGTAGATTT
TACAGCCGAGGAGATCAAAGCGTTGCTACTGCATATTGGAGGATATGTCACTGGAATGTACCTAAAGCATCTAAGTACATTTCTTCAATTTCTTCTTCGACTGAAAAGTGTAATATTGTCTTAATCAAACTTCATATCAGAAGCCATGGAATTTCCATAGCGGTAGCATTTTCTTGGAGTGGCTTCTGATTTAGAAGATG
CCAAGGAGGCTTAGATTTTCCTTAGATATCCATATTTCAAATGGTTGATAATATGTTACAGTTGTCATTTTGTTGAGTGTTCTGCCTGAATTAGTAATCTTCAGTGAGTCATGTGAAGGCCAAGCTTTAGTCGAGGGATGGTTTGTCTCAGAGATTCATGGTGAGAATGAGTTTGTTAGAGATGCTCTTGGATTATAGCT
ACTCCTACAAGGGCGTTGTCTGCGATGTACATTACAGAGATATCCTTTTTTTTAAGTCTATTTTTGAATATTCTCATTCACGAGTTATATATAATATGATCCAGTAAAAGCTCATCATTGCGTTACAAGAGGCCAAACTAGCACTATGGTACTAGAAAAACCCTACATTTAGATTAGCAGAGAGGAGGACGAACAAGATG
CTCCTCCAAAACCAGATATTTGATAGATCTTAACTTGATGCATACTATAGCTTCCCATCATGAGGGTTCTATTGTGAGAGCAAAGAACAAGCTGCAATTTGATTGGAAAAAATTCAAGGAATAGAAGCCAAGTATTCAAAATTGGAATCTGCTAATTACAAAGCATGATATTCAAGGACTCTCGGTTATATTTTGCTGCC
CTAATTTCAGAATGATGCATCTATGACCCATTTTGAACGCTGGAGCAGATAAGTTATACGGATATTGATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGGAACCATTAAACTTGATGAATGTGAAGGCCATTTTG
GACATATTCGTCTTCCAATTCCAGTTTTTCATCCTTCTCACATTCCGATTATGAATGATGTGACAAAAGTACTACCGGAGAAAAAACCTATTAGTTATGGGACGGATTTACAGGGTACGAAAGCTAATAGTTTGATAAATTGCAAAAGGAAGAACTCTGATGCAGGACATAATGCAACTAGTATTGATGCAAGTTCTAAC
TATGAAGAGGTAATTTTAGTGCTGGGTAATTGTGAAGCATACAATATTTAGGAAGCATGCACATGACATATTGCACTTAGTACTAATGCAAAATTCTGAAGAGGTAAAGGTAATTTTATTGTTGGGCAATTGTGAAACAAACAATATTTATAAAGCATGCATAGGACATATGCTATTAGTACTTTTATGCAATTTCTAAT
TCTGAAGAGGTAATTTTAGAGTTGGC
>TRINITY_DN41767_c0_g1_i11 from sample A8 / Example unspliced isoform:GTTAGATATGGCATTCGATTCAGTCAAGAAGCAGTTGGTTGGGTGGTTACATGCCATACTCAAGGGCAGAGGCATACACAGAGGCATATTGCTCTTTCTACCATAGAGGCAGAGTATCGAGGAGCTGCTAATGCCCCTCTGGTAACCGAGCTTAAGTCCTCAGATGGACAGGGCCTCAACAATGGCAGATGTTTTTGAGT
ACATGAAGGAGATTCTGCAACGTATTAAAGATCTCCATATCGAGCTCATGTCAGGTTCCTCCAACTTGAAGCCCTTGGCACCTGCACTGCCAGAGTTTTCTTGCATAATGAACCAAGGGTATCAAGCTTCATTGCTTAATCCAGAATTAAACCCAGCAAAGGTGGACGTGCGGGCAAGAGAAGGGAAGTCCCTAAACATC
CACATGTTCTGTTCCAGAAATACCGACTTACTTCTATCCACAATCAGGACTCTGGATGGACTTGGTCTTGAGATTAAGCACGCAACCATAAGCTACCAAGGTGGATTTTCACTAGATGTATTTCAAGCAGAGCAATCCACGAGGGTAGATTTTACAGCCGAGGAGATCAAAGCGTTGCTACTGCATATTGGAGGATATGT
CACTGGAATGTACCTAAAGCATCTAAGTACATTTCTTCAATTTCTTCTTCGACTGAAAAGTGTAATATTGTCTTAATCAAACTTCATATCAGAAGCCATGGAATTTCCATAGCGGTAGCATTTTCTTGGAGTGGCTTCTGATTTAGAAGATGCCAAGGAGGCTTAGATTTTCCTTAGATATCCATATTTCAAATGGTTGA
TAATATGTTACAGTTGTCATTTTGTTGAGTGTTCTGCCTGAATTAGTAATCTTCAGTGAGTCATGTGAAGGCCAAGCTTTAGTCGAGGGATGGTTTGTCTCAGAGATTCATGGTGAGAATGAGTTTGTTAGAGATGCTCTTGGATTATAGCTACTCCTACAAGGGCGTTGTCTGCGATGTACATTACAGAGTATAGCTTC
CCATCATGAGGGTTCTATTGTGAGAGCAAAGAACAAGCTGCAATTTGATTGGAAAAAATTCAAGGAATAGAAGCCAAGTATTCAAAATTGGAATCTGCTAATTACAAAGCATGATATTCAAGGACTCTCGGTTATATTTTGCTGCCCTAATTTCAGAATGATGCATCTATGACCCATTTTGAACGCTGGAGCAGATAAGT
TATACGGATATTGgtaagtagttttgtttctttttatttaggtgcaagtttcttctaagtggttaacggtggtcatgtactaatccagtgtgcactctattgattaatcaattgttatatacgtttatattatatacaatagcagttgacaacaggaatacgactgcgttttaatgctagaaagttgtattgtatatatt
atccattatcgtttgaacaacacttgatcaaaagacttttaaatctctgtaaaggttattgtgtcttcatgggaatctactgatacatttggtaatggtactaggtaaccaatctcttacatcaaacaattattcacagttatataaagttacaaagtgtgcatgttctactgtattgaagttgcaagaaaacctccatt
catattcaatagctatttttttgtgtccaaatgcagATAAAGGTGTCTCGCTCTGAGCCTATTCAACTTCCAGGCCAACTATCTGGCCCTTTACTTGTACTTCCTACAGAGTCGCACAAATTGTCATCGTGTGGAACCATTAAACTTGATGAATGTGAAGGCCATTTTGGACATATTCGTCTTCCAATTCCAGTTTTTCA
TCCTTCTCACATTCCGGTAGTAGTTCGTATTCTAAAGAGCATTTGTCTAAACTGTTTCAAGCTTAAAAAGAAGAAAAATGTTAGAGCAGCTGAAAAGAGGAAAATATTGTAGATTTCTGCAAAATTTGTTTCATATTTCATTAAAATTTTAGTATGTTTGAAGCTAATGATGGGGTTAAAATGTGAATTTCGTGCCACCT
TTCATCTTTTGAATGTTTACCTTGGACGTTTTCAGTCTAACTCCATTTGATATCATCCATCTAGAACATGAAGCTTGCCTCGCATGGAGATGTCAAACTGAATGCATAATCATATTCAATCCATTGTGAGAGGCGTAGAAAGTTTATTTTGCTGTAATAGTGATTTTTGAACCTGCCATAGTTGAATAATCCAGAACAAT
AGAGGAATTTTATAGCAGTGGCCTGGAAAATGAGGGTTGAGCATTCTAGAGCTGAGTTCATAAACTATGCTTGCATCAGGACATAGTTTCGGTTTTAATGGATGAATATCACCAATCCTTGCTTTCCATTTTCTGAGTTTGGGAGATGCAAGAGAGCAACTGTTTTATACTAAACTAGGCATTAGATTGCCAACAAAGAC
CCAGAATACAGAAAGAGTGGGCTTTCCTAGAACAATGTGTTTCTGTTGTTTTGCTATGGCTTCCTCTAAGGAGATAACCTAAGGAAATGACTTATTTCTTCTTTTATTGAATCGTTCAATA