sp|Q6WWW4|UPL3_ARATH ----> E3 ubiquitin-protein ligase UPL3
Intron 1 GTACTTGATA ... CTTTCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.95 | 68 | 12 | 4 |
| A2 | 15.59 | 65 | 13 | 10 |
| A3 | 12.53 | 95 | 14.7 | 11.3 |
| A4 | 13.89 | 76 | 13.3 | 7.7 |
| A5 | 9.53 | 48 | 5.3 | 4.7 |
| A6 | 10.13 | 240 | 28.7 | 29.7 |
| A7 | 10.13 | 257 | 30.3 | 37 |
| A8 | 9.28 | 266 | 28.7 | 31 |
| A9 | 11.78 | 177 | 25.3 | 21.7 |
| A10 | 11.97 | 209 | 30.3 | 22 |
>TRINITY_DN113548_c5_g3_i1 from sample A2 / Example spliced isoformAGCTGTAGAAAGGGATGTTCTGATGCCAGATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAAT
TTTGTCTTCTTGGGCGTCTAATGGCAAAAGCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTTGATCGAAAGAAATTCTTGGAGTCAATA
CTTGGTGATAAGGAAGAGGCAATATCAAATTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTTTGGTCAACATCGATAACATGGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTC
ACAATTAGAGGCCTTCCGAACAGGATTCAATCAGGTGTTGCCCCTCTCATCTTTGCAAATATTTACTGAAAATGAGTTGGATTATCTTTTCTGCGGTGTGCGTAACTTGTGGGTGGCTGAAACTCTTACTGATCACATCAAATTTGATCATGGCTATACAGCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGG
TAGAGTTCACCCCTACACAGCAGCAGGCATTTTTGCAGTTTATTACTGGTTGTCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGCAACTGGAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTC
AAACTTCCTCCTTACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATG
ACATGTAAATATCTGTAATAATCTGGTCTCTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATC
AATCATTGAATTATCCATTTCGTCTCATATAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAGATTTTAA
TATATCGTGTTTGGGTGGCCTATGTTATTCCCG
>TRINITY_DN113548_c5_g3_i2 from sample A2 / Example unspliced isoform:AGCTGTAGAAAGGGATGTTCTGATGCCAGATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAAT
TTTGTCTTCTTGGGCGTCTAATGGCAAAAGCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTTGATCGAAAGAAATTCTTGGAGTCAATA
CTTGGTGATAAGGAAGAGGCAATATCAAATTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTTTGgtacttgataaaatcctcactttttagttcatttcctgaaatttggcaaccttctctaacttatttcaaga
ttggtgtatgttatcatttatgcattgctttctgtagGTCAACATCGATAACATGGAAG
Intron 2 GCTGAAACTC ... GGCTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.51 | 32 | 73 | 80 |
| A2 | 76.79 | 13 | 47 | 39 |
| A3 | 63.49 | 46 | 74 | 86 |
| A4 | 70.37 | 20 | 44 | 51 |
| A5 | 79.31 | 9 | 36 | 33 |
| A6 | 70.98 | 64 | 134 | 179 |
| A7 | 75.88 | 65 | 192 | 217 |
| A8 | 71.52 | 87 | 199 | 238 |
| A9 | 71.54 | 74 | 178 | 194 |
| A10 | 74.11 | 40 | 117 | 112 |
>TRINITY_DN102923_c5_g3_i2 from sample A4 / Example spliced isoformCTTCCACTTCCTCTGCCTTCTCTTTTTAATTTGTTCATCATCAGGGCGGATGCAAAGCAGGAATTGGCATCCGGTTAAACCCAAACCCGCAACACCACCACCGGAATTCCTCCCTTGCGTCAGGAGTTCGAAACGCAGACACACACTAACAACAGGCTTTTAAGTGCGAGGGAGCCGACGAACGGTCCGGGGAGCCCAGA
TAATTTTATGGAAACAAGGAGCCGCAAGCGCGCGGAGGCCAAATCGCAGAGGCCAGCCGCTATTAATACTTCTTCGGCCGCCGATAAGAGCAGCAGCGACGGTAAGAAACGAGCTAGAGTCGAACCGCCTCAATCGACCCCGTCTGCCCCCGCCCCCACTCCCACTCGTCGCTTGACTCGATCCTCTGCCCGCATGGAAT
CCCCAGCCGGAGCTTCTGCTGCGAAGAAAGAAGAAATCGACAAGAAAGGGAAACGGGAAGCAACAGTGGACAGGGTTCGGGAACAGGAGCGGGAGCCGGACCGGAGGGAAATTCTGAGCGATTACTATGAAGAAGAGGAAAGCGGTGAAGATGATTACGCGGACGACGGCGACGATGAGGACCTAGGCGTCCGGAGCCAT
CACTACCCGCCCGCTGCGTTCGAGGGCCGGCTACGGGAATTCACCGGTTACTATGATGTTATGCCCCCATCGGCCCCTCAGAACGGCCGGATGAAGGAAATTCTGTCGCGATTGCGAGATAATGGCGATGATTTCAGTCAGACGGAGGCGCTTACTGAATTGTGCAATGTTTTGTCCATGGCGACTGAAAACAGTCTCGC
CGGCTTCTCACTCGAGTCTTTTGTCCCCGTGCTGGTCGGTTTGCTGAATCGAGAACCTTTTCCAGACGTGATGCTTCTGGCAGCGAGGGCTTTAACTCACCTCTGCGATGCTCTCCCTTCGTCTTGTTCGGCCGTTGTGCATCACGGCGCAATCCCTGCTTTCTGTGCGCGCTTGCTTACCATTGAGTACATGGATTTGG
CTGAACAGTCTTTGCAAGCTTTGGAAAAGATTTCTCACAGGCATGCAGCTGCTTGTCTTCGTGGTGGTGCTCTTATGGCAGTACTGTCTTACCTAGATTTTTTCTCCACTGGTGTAAAGAGAGTAGCTTTATCAACAGCTGCAAACATTTGCAAACAACTTTCAGTTGATACTATTGCTTCTGCAATGGAAACAATTCCA
ACCTTGACTGGTCTTCTTTCAGATAATGATACCAAGGTGGTAGAGAATGCATCGTTTTGCTTAGCTCGAATTGCAGAAGCTTGTGCTTCTTCTCCAGAAAACTTGAACAAACTCTCTAGCTACAGTCTGGTTTCACAAGCTGCAAATCTGATATCTGTCACTAACTCAGGCAGTGCCCGGGCATCTCTTAGTTCTTCAAC
ATACACGGTTTTAATTAGGCTTCTTTCAACTTGTGCAAGCAGCTCTGCTTTATCAACAAAGGAACTACTTGAAATGGGGATCTCTGGTATCCTTAGAGACATTCTAGCCGGCTCAGGCCTTGTTTCACAAATAGCTGTTCCTTTTTCATCAAATAGGCCTCCTGATCAGTTGTATGAAATTGTGTCCTTGGTGAATAAGC
TTCTTCCATCATTACCTCATAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAATTCGTTCTACAAGGAAGCAAATTGGCAGAAATAATAGAGAAAATGTGGAGGGTATCAGTAAAACTGTGGCAGACGTTTCTGATCATGAAAAACTGTTACGTGAAAAACCTGAACTTTTGGTTCAGTTTGGAGCAGATCTC
TTCCCAGTATTGGTTCAGGTACATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGTTGCTGTACTTTAGTACAGAGGACATGTTAAAGTCTTTACTACAGGCAACAAACATACCAAGTTTTTTGGCAGGAGTTTTAACAGGGAAAGATGTTGAAGTTTTGGTTCCAGCACTTCAAAT
GGCAGAAATTCTAATGCAAAAGCTTCCTGGCACAATTTCCAAGCTCTTTACGAAGGAAGGTGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAAGGCGTAACAAGCGACTACCTGGTGGGTCAACAAATGAAGCAATTAGAATAGAAGGAT
CCAAAGATAAAATGTCAGGAAAAGGTGGTGCACGTCCATCTGTTGGGACATTAACAATGACAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGAGCTACAGATAGTCTTTGCAAATTAAAAGATCTCTGTAAAAAATTAAATGGTTATTTG
ACTGATCCAAAGTCCAAATCAAAAGGTAGGGGTAAAAGGACTGAACTTGTTGCTGTTAATAATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAGAAGTGGACTTGTGGAAACTTTACTAAATTATTTTTCCGGGGGAGCTTTATCCAAAGA
AAACTTGTCAGAAGTTGATTTGTTGAAGCATCACAAACAGGTATTGAAGAGGCTCCAGTCATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCACTAGCCTCTTTGGAACATTTTGAGTTGGTTTTGAACCATATTCCAAATTCACACAGTG
CTAATACTAGCATTTCAGCAGTATTGAATGCATTATCAAAGCCTTTGAAATTACGGCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAAGATTTACTTTGGTCCAAAGTTCAGAGAAATGAAACTGAAACAAGATGTCATAGTAGT
GAAGTACAACCTTGTGCCACATCTGCATCAACTCAATCTCAAGCAATACCTGCACAAGCTGCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAAAGCATCAAGGGAAAAGGGAAAATCCATCTCAAGAAATGTCATTGATGACGTCAGGGG
CCCACAAACAAGAAGTGCAGCTAGGAGAAGAGCATCAATGGAAAGTTATTCACAAATCAAACAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATCGGAGAGGCTATACCTATGGAAGACGATTACTCTTCTGAAGAGGATGGAGAAGAAGATGACGAAGATGATGAAATTTACT
TGGCAGAGCGAGTGTATGAGGCAGAGTTTGGGCATTCATCATATGCCAGTGCATTAGCTTCATCAACTGCAATAACTGCTGCTATGACTGGCCATGCATCTACTAGTGCCAAAGGAGCTATTGGGAGTAGAGACCACAGGACTTTGCCTAATCATAGTAAGGCAAATGTCTGTCCTCGATTGAACTTTTTCATTGGTGGG
AAACAGCTTGACAGGTCATCAACATTATACCAGGCAATTATGCATCATACTGTATCAGATGGATATGAACCAAGGTATGCTGGTTCAGATTTTCCTGGGTATGACAGTCGAAGGTTTTGGGATGAAGTTTACACTATTACCTATCAGAGCATAGCTGTGACAACCAAGAGGGATTTGACTGGAACAATTAAAACGTATTC
TACTCCTAAGAATACTGAGTATATGTCACTTATAGATAGCATTTTGCAAAGAAAACTTCCCTGTGACCTTCAAAAATCAGATAGGACATATAATATTTTGTTGTTACTTAGAATAGTAGAAGGACTCAACTGTTTAGCTCCTTCTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAGGGAAAATTGACAAGCCTAG
ATCAATTGAAAGTCAATGGTCCTGTTGTTCCCCAAGAAGAATTTTCAAGTAAAAAGTTGACACCAAAGTTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAAGCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCA
CTAGGATTATCCCGTGCATTGCAGTATTTTCAGCAGCAGCAGAGTGCTGAAAATCCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGTCAAAAGGTTCGAGTATCAAGAAGGCGCATATTGGACTCAGCTGTGAAGGTGATGGACATGTTTTGTTCTGGGCAGAAGGCTGTCCTTGAAGTTGAGTA
CCTTGGGGAGGTTGGCACTGGTTTAGGTCCAACTCTCGAGTTCTATACTCTTGTTAGTCATGAATTGCAAAGGAGTACACTTGGCATGTGGAGAACAAGCTCGTCACCTAAAGAAGCTGTAGAAAGGGATGTTCTGATGCCAGATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGT
ATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAATTTTGTCTTCTTGGGCGTCTAATGGCAAAAGCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTT
GTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTCGATCGAAAGAAATTCTTGGAGTCAATACTTGGTGATAAGGAAGAGGCAATATCAAATTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGG
TTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTTTGGTCAACATCGATAACATGGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTCACAATTAGAGGCCTTCCGAACAGGATTCAATCAGGTGTTGCCCCTCTCATCTTTGCAAATATTTACTGAAAATGAGCTGGATTATC
TTTTCTGCGGTGTGCGTAACTTGTGGGTGCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGGTAGAGTTCACCCCTACACAGCAGCAGGCATTTTTGCAGTTTATTACTGGTTGTCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGCAACTG
GAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCTTACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAA
AGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTGTAATAATCTGGTCTCTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGC
TAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTCATATAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTG
CTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAGATTTTAATATATAGTGTTTGGGTGGCCG
>TRINITY_DN102923_c5_g3_i3 from sample A4 / Example unspliced isoform:ATTTTATTTTTCTAATTTAAATTTTATTTATGATAATAATATTTAGTATCTTGGCAATGAAATAAGATACAAGTCACAGGTATTGACCAAATCTTGTTTTTTAAAACAGTTGTATGAAATTGTGTCCTTGGTGAATAAGCTTCTTCCATCATTACCTCATAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAA
TTCGTTCTACAAGGAAGCAAATTGGCAGAAATAATAGAGAAAATGTGGAGGGTATCAGTAAAACTGTGGCAGACGTTTCTGATCATGAAAAACTGTTACGTGAAAAACCTGAACTTTTGGTTCAGTTTGGAGCAGATCTCTTCCCAGTATTGGTTCAGGTACATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGT
CTGGAAGGTATTAGCAAGTTGCTGTACTTTAGTACAGAGGACATGTTAAAGTCTTTACTACAGGCAACAAACATACCAAGTTTTTTGGCAGGAGTTTTAACAGGGAAAGATGTTGAAGTTTTGGTTCCAGCACTTCAAATGGCAGAAATTCTAATGCAAAAGCTTCCTGGCACAATTTCCAAGCTCTTTACGAAGGAAGG
TGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAAGGCGTAACAAGCGACTACCTGGTGGGTCAACAAATGAAGCAATTAGAATAGAAGGATCCAAAGATAAAATGTCAGGAAAAGGTGGTGCACGTCCATCTGTTGGGACATTAACAATGA
CAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGAGCTACAGATAGTCTTTGCAAATTAAAAGATCTCTGTAAAAAATTAAATGGTTATTTGACTGATCCAAAGTCCAAATCAAAAGGTAGGGGTAAAAGGACTGAACTTGTTGCTGTTAAT
AATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAGAAGTGGACTTGTGGAAACTTTACTAAATTATTTTTCCGGGGGAGCTTTATCCAAAGAAAACTTGTCAGAAGTTGATTTGTTGAAGCATCACAAACAGGTATTGAAGAGGCTCCAGTC
ATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCACTAGCCTCTTTGGAACATTTTGAGTTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCAGCAGTATTGAATGCATTATCAAAGCCTTTGAAATTACGGCTTT
GTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAAGATTTACTTTGGTCCAAAGTTCAGAGAAATGAAACTGAAACAAGATGTCATAGTAGTGAAGTACAACCTTGTGCCACATCTGCATCAACTCAATCTCAAGCAATACCTGCACAAGCT
GCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAAAGCATCAAGGGAAAAGGGAAAATCCATCTCAAGAAATGTCATTGATGACGTCAGGGGCCCACAAACAAGAAGTGCAGCTAGGAGAAGAGCATCAATGGAAAGTTATTCACAAATCAA
ACAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATCGGAGAGGCTATACCTATGGAAGACGATTACTCTTCTGAAGAGGATGGAGAAGAAGATGACGAAGATGATGAAATTTACTTGGCAGAGCGAGTGTATGAGGCAGAGTTTGGGCATTCATCATATGCCAGTGCATTAGCTT
CATCAACTGCAATAACTGCTGCTATGACTGGCCATGCATCTACTAGTGCCAAAGGAGCTATTGGGAGTAGAGACCACAGGACTTTGCCTAATCATAGTAAGGCAAATGTCTGTCCTCGATTGAACTTTTTCATTGGTGGGAAACAGCTTGACAGGTCATCAACATTATACCAGGCAATTATGCATCATACTGTATCAGAT
GGATATGAACCAAGGTATGCTGGTTCAGATTTTCCTGGGTATGACAGTCGAAGGTTTTGGGATGAAGTTTACACTATTACCTATCAGAGCATAGCTGTGACAACCAAGAGGGATTTGACTGGAACAATTAAAACGTATTCTACTCCTAAGAATACTGAGTATATGTCACTTATAGATAGCATTTTGCAAAGAAAACTTCC
CTGTGACCTTCAAAAATCAGATAGGACATATAATATTTTGTTGTTACTTAGAATAGTAGAAGGACTCAACTGTTTAGCTCCTTCTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAGGGAAAATTGACAAGCCTAGATCAATTGAAAGTCAATGGTCCTGTTGTTCCCCAAGAAGAATTTTCAAGTAAAAAGTTGA
CACCAAAGTTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAAGCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCACTAGGATTATCCCGTGCATTGCAGTATTTTCAGCAGCAGCAGAGTGCTGAAAATCCAAAT
TTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGTCAAAAGGTTCGAGTATCAAGAAGGCGCATATTGGACTCAGCTGTGAAGGTGATGGACATGTTTTGTTCTGGGCAGAAGGCTGTCCTTGAAGTTGAGTACCTTGGGGAGGTTGGCACTGGTTTAGGTCCAACTCTCGAGTTCTATACTCTTGTTAGTCA
TGAATTGCAAAGGAGTACACTTGGCATGTGGAGAACAAGCTCGTCACCTAAAGAAGCTGTAGAAAGGGATGTTCTGATGCCAGATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATT
GTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAATTTTGTCTTCTTGGGCGTCTAATGGCAAAAGCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAA
ACTTTGCAAGAAATGGAAGCCCTAGTCGATCGAAAGAAATTCTTGGAGTCAATACTTGGTGATAAGGAAGAGGCAATATCAAATTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTTTGGTCAACATCGATAACAT
GGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTCACAATTAGAGGCCTTCCGAACAGGATTCAATCAGGTGTTGCCCCTCTCATCTTTGCAAATATTTACTGAAAATGAGCTGGATTATCTTTTCTGCGGTGTGCGTAACTTGTGGGTGgctgaaactcttactgatcacatcaaatttg
atcatggctatacagCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGGTAGAGTTCACCCCTACACAGCAGCAGGCATTTTTGCAGTTTATTACTGGTTGTCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGCAACTGGAGATCCAAATTCA
GAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCTTACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAAAGGCAGGGTGATAA
TCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTGTAATAATCTGGTCTCTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGCTAGTAGCAGGGCAT
TCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTCATATAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTGCTGTCAACTTGTTC
AGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAGATTTTAATATATAGTGTTTGGGTGGCCG
Intron 3 GTAAGTACAC ... GGGAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.1 | 67 | 0 | 11 |
| A2 | 20 | 48 | 0 | 12 |
| A3 | 14.29 | 48 | 1 | 8 |
| A4 | 29.63 | 38 | 0 | 16 |
| A5 | 8.33 | 33 | 0 | 3 |
| A6 | 21.43 | 176 | 2 | 48 |
| A7 | 25.82 | 135 | 0 | 47 |
| A8 | 19.53 | 206 | 0 | 50 |
| A9 | 20.86 | 148 | 0 | 39 |
| A10 | 27.27 | 96 | 0 | 36 |
>TRINITY_DN40839_c0_g2_i1 from sample A6 / Example spliced isoformCGTCGCTTGACTCGATCCTCTGCCCGCATGGAATCCCCAGCCGGAGCTTCTGCTGCGAAGAAAGAAGAAATCGACAAGAAAGGGAAACGGGAAGCAACAGTGGACAGGGTTCGGGAACAGGAGCGGGAGCCGGACCGGAGGGAAATTCTGAGCGATTACTATGAAGAAGAGGAAAGCGGTGAAGATGATTACGCGGACGA
CGGCGACGATGAGGACCTAGGCGTCCGGAGCCATCACTACCCGCCCGCTGCGTTCGAGGGCCGGCTACGGGAATTCACCGGTTACTATGATGTTATGCCCCCATCGGCCCCTCAGAACGGCCGGATGAAGGAAATTCTGTCGCGATTGCGAGATAATGGCGATGATTTCAGTCAGACGGAGGCGCTTACTGAATTGTGCA
ATGTTTTGTCCATGGCGACTGAAAACAGTCTCGCCGGCTTCTCACTCGAGTCTTTTGTCCCCGTGCTGGTCGGTTTGCTGAATCGAGAACCTTTTCCAGACGTGATGCTTCTGGCAGCGAGGGCTTTAACTCACCTCTGCGATGCTCTCCCTTCGTCTTGTTCGGCCGTTGTGCATCACGGCGCAATCCCTGCTTTCTGT
GCGCGCTTGCTTACCATTGAGTACATGGATTTGGCTGAACAGTCTTTGCAAGCTTTGGAAAAGATTTCTCACAGGCATGCAGCTGCTTGTCTTCGTGGTGGTGCTCTTATGGCAGTACTGTCTTACCTAGATTTTTTCTCCACTGGTGTAAAGAGAGTAGCTTTATCAACAGCTGCAAACATTTGCAAACAACTTTCAGT
TGATACTATTGCTTCTGCAATGGAAACAATTCCAACCTTGACTGGTCTTCTTTCAGATAATGATACCAAGGTGGTAGAGAATGCATCGTTTTGCTTAGCTCGAATTGCAGAAGCTTGTGCTTCTTCTCCAGAAAACTTGAACAAACTCTCTAGCTACAGTCTGGTTTCACAAGCTGCAAATCTGATATCTGTCACTAACT
CAGGCAGTGCCCGGGCATCTCTTAGTTCTTCAACATACACGGTTTTAATTAGGCTTCTTTCAACTTGTGCAAGCAGCTCTGCTTTATCAACAAAGGAACTACTTGAAATGGGGATCTCTGGTATCCTTAGAGACATTCTAGCCGGCTCAGGCCTTGTTTCACAAATAGCTGTTCCTTTTTCATCAAATAGGCCTCCTGAT
CAGTTGTATGAAATTGTGTCCTTGGTGAATAAGCTTCTTCCATCATTACCTCATAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAATTCGTTCTACAAGGAAGCAAATTGGCAGAAATAATAGAGAAAATGTGGAGGGTATCAGTAAAACTGTGGCAGACGTTTCTGATCATGAAAAACTGTTACGTGAAAA
ACCTGAACTTTTGGTTCAGTTTGGAGCAGATCTCTTCCCAGTATTGGTTCAGGTACATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGTTGCTGTACTTTAGTACAGAGGACATGTTAAAGTCTTTACTACAGGCAACAAACATACCAAGTTTTTTGGCAGGAGTTTTAACAGGGA
AAGATGTTGAAGTTTTGGTTCCAGCACTTCAAATGGCAGAAATTCTAATGCAAAAGCTTCCTGGCACAATTTCCAAGCTCTTTACGAAGGAAGGTGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAAGGCGTAACAAGCGACTACCTGGT
GGGTCAACAAATGAAGCAATTAGAATAGAAGGATCCAAAGATAAAATGTCAGGAAAAGGTGGTGCACGTCCATCTGTTGGGACATTAACAATGACAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGAGCTACAGATAGTCTTTGCAAATT
AAAAGATCTCTGTAAAAAATTAAATGGTTATTTGACTGATCCAAAGTCCAAATCAAAAGGTAGGGGTAAAAGGACTGAACTTGTTGCTGTTAATAATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAGAAGTGGACTTGTGGAAACTTTAC
TAAATTATTTTTCCGGGGGAGCTTTATCCAAAGAAAACTTGTCAGAAGTTGATTTGTTGAAGCATCACAAACAGGTATTGAAGAGGCTCCAGTCATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCACTAGCCTCTTTGGAACATTTTGAG
TTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCAGCAGTATTGAATGCATTATCAAAGCCTTTGAAATTACGGCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAAGATTTACTTTGGTCCAAAGTTCA
GAGAAATGAAACTGAAACAAGATGTCATAGTAGTGAAGTACAACCTTGTGCCACATCTGCATCAACTCAATCTCAAGCAATACCTGCACAAGCTGCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAAAGCATCAAGGGAAAAGGGAAAAT
CCATCTCAAGAAATGTCATTGATGACATCAGGGGCCCACAAACAAGAAGTGCAGCTAGGAGAAGAGCATCAATGGAAAGTTATTCACAAATCAAACAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATCGGAGAGGCTATACCTATGGAAGACGATTACTCTTCTGAAGAGGAT
GGAGAAGAAGATGACGAAGATGATGAAATTTACTTGGCAGAGCGAGTGTATGAGGCAGAGTTTGGGCATTCATCATATGCCAGTGCATTAGCTTCATCAACTGCAATAACTGCTGCTATGACTGGCCATGCATCTACTAGTGCCAAAGGAGCTATTGGGAGTAGAGACCACAGGACTTTGCCTAATCATAGTAAGGCAAA
TGTCTGTCCTCGATTGAACTTTTTCATTGGTGGGAAACAGCTTGACAGGTCATCAACATTATACCAGGCAATTATGCATCATACTGTATCAGATGGATATGAACCAAGGTATGCTGGTTCAGATTTTCCTGGGTATGACAGTCGAAGGTTTTGGGATGAAGTTTACACTATTACCTATCAGAGCATAGCTGTGACAACCA
AGAGGGATTTGACTGGAACAATTAAAACGTATTCTACTCCTAAGAATACTGAGTATATGTCACTTATAGATAGCATTTTGCAAAGAAAACTTCCCTGTGACCTTCAAAAATCAGATAGGACATATAATATTTTGTTGTTACTTAGAATAGTAGAAGGACTCAACTGTTTAGCTCCTTCTTTGAGAGCTCAGGCCTCATCT
GATGCTTTTGCAGAGGGAAAATTGACAAGCCTAGATCAATTGAAAGTCAATGGTCCTGTTGTTCCCCAAGAAGAATTTTCAAGTAAAAAGTTGACACCAAAGTTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAAGCCTGTCCATTTCTGTTTCCATT
TGAGACAAGGAGGCAATATTTTTATTCCACTGCACTAGGATTATCCCGTGCATTGCAGTATTTTCAGCAGCAGCAGAGTGCTGAAAATCCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGTCAAAAGGTTCGAGTATCAAGAAGGCGCATATTGGACTCAGCTGTGAAGGTGATGGACATGTTTT
GTTCTGGGCAGAAGGCTGTCCTTGAAGTTGAGTACCTTGGGGAGGTTGGCACTGGTTTAGGTCCAACTCTCGAGTTCTATACTCTTGTTAGTCATGAATTGCAAAGGAGTACACTTGGCATGTGGAGAACAAGCTCGTCACCTAAAGAAGCTGTAGAAAGGGATGTTCTGATGCCAGATGCTGAAGAAGATAATTTGTCT
ATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAATTTTGTCTTCTTGGGCGTCTAATGGCAAAAGCTCTTCAGGATGGCAGGCTTCT
GGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTCGATCGAAAGAAATTCTTGGAGTCAATACTTGGTGATAAGGAAGAGGCAATATCAAATTTATCCTATCGTGGTGCAAGAA
TTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTTTGGTCAACATCGATAACATGGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTCACAATTAGAGGCCTTCCGAACAGGATTCAATCAGGTGTTGCCCCTCTCATCT
TTGCAAATATTTACTGAAAATGAGCTGGATTATCTTTTCTGCGGTGTGCGTAACTTGTGGGTGGCTGAAACTCTTACTGATCACATCAAATTTGATCATGGCTATACAGCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGGTAGAGTTCACCCCTACACAGCAGCAGGCATTTTTGCAGTTTATTACTGGTTG
TCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGCAACTGGAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCTTACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATG
CCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTGTAATAATCTGGTCTCTTTTTACTTAATCACAATGTAA
TCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTCATATAATTATGATGTAAAGTTTTGAT
CCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAGATTTTAATATATCGTGTTTGGGTGGCCTATGTTATTCCCTTTTTAGTACGAACAACTCT
ATAGAATTGTTATCCCGGATTAGTACATTATACTTTTATTCAAAGTTCACAAGATAAGTGGGTGCACATTGTACCGGTGTTTCTGCTTGATTTATTGGAATGCAGTTCTAATTGCTACCTCTAATGCAGTTCTAGTGGATACCACTTCAAATTTGCAAGAGTTGCTTACCTCTTAAACTAGATTTGGAGGTATATAATTG
ACCAAATCGTGAAAATAATATTTTTTGGAAAATATTCTAGGGTTTTTGTGAAATATCAACTGCTTGAGCTTGCTTCTTTTCAAAGAAG
>TRINITY_DN40839_c0_g2_i2 from sample A6 / Example unspliced isoform:CAAAATTAACTGTTGTTCGGAAGgtaagtacacttaatagttgcttgtgaacttaattaaggggttctgtggaaatgggctttaagttctaaacattttcgtgggagtgcagAATTTTTCAGGAGCAACTGGAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCA
AACTTCCTCCTTACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGA
CATGTAAATATCTGTAATAATCTGGTCTCTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCA
ATCATTGAATTATCCATTTCGTCTCATATAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAGATTTTAAT
ATATCGTGTTTGGGTGGCCTATGTTATTCCCTTTTTAGTACGAACAACTCTATAGAATTGTTATCCCGGATTAGTACATTATACTTTTATTCAAAGTTCACAAGATAAGTGGGTGCACATTGTACCGGTGTTTCTGCTTGATTTATTGGAATGCAGTTCTAATTGCTACCTCTAATGCAGTTCTAGTGGATACCACTTCA
AATTTGCAAGAGTTGCTTACCTCTTAAACTAGATTTGGAGGTATATAATTGACCAAATCGTGAAAATAATATTTTTTGGAAAATATTCTAGGGTTTTTGTGAAATATCAACTGCTTGAGCTTGCTTCTTTTCAAAGAAG
Intron 4 GTATGTAAAA ... GTTTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.23 | 74 | 18 | 15 |
| A2 | 16.81 | 47 | 10 | 9 |
| A3 | 22.68 | 75 | 27 | 17 |
| A4 | 25 | 45 | 9 | 21 |
| A5 | 15.29 | 36 | 7 | 6 |
| A6 | 17.28 | 134 | 29 | 27 |
| A7 | 17.42 | 192 | 36 | 45 |
| A8 | 17.94 | 199 | 43 | 44 |
| A9 | 20 | 178 | 41 | 48 |
| A10 | 18.47 | 117 | 31 | 22 |
>TRINITY_DN109275_c1_g4_i3 from sample A3 / Example spliced isoformCTCTTTTTAATTTGTTCATCATCAGGGCGGATGCAAAGCAGGAATTGGCATCCGGTTAAACCCAAACCCGCAACACCACCACCGGAATTCCTCCCTTGCGTCAGGAGTTCGAAACGCAGACACACACTAACAACAGGCTTTTAAGTGCGAGGGAGCCGACGAACGGTCCGGGGAGCCCAGATAATTTTATGGAAACAAGG
AGCCGCAAGCGCGCGGAGGCCAAATCGCAGAGGCCAGCCGCTGTTAATACTTCTTCGGCCGCCGATAAGAGCAGCAGCGACGGTAAGAAACGAGCTAGAGTCGAACCGCCTCAATCGACCCCGTCTGCCCCCGCCCCCACTCCCACTCGTCGCTTGACTCGATCCTCTGCCCGCATGGAATCCCCAGCCGGAGCTTCTGC
TGCGAAGAAAGAAGAAATCGACAAGAAAGGGAAACGGGAAGCAACAGTGGACAGGGTTCGGGAACAGGAGCGGGAGCCGGACCGGAGGGAAATTCTGAGCGATTACTATGAAGAAGAGGAAAGCGGTGAAGATGATTACGCGGACGACGGCGACGATGAGGACCTAGGCGTCCGGAGCCATCACTACCCGCCCGCTGCGT
TCGAGGGCCGGCTACGGGAATTCACCGGTTACTATGATGTTATGCCCCCATCGGCCCCTCAGAACGGCCGGATGAAGGAAATTCTGTCGCGATTGCGAGATAATGGCGATGATTTCAGTCAGACGGAGGCGCTTACTGAATTGTGCAATGTTTTGTCCATGGCGACTGAAAACAGTCTCGCCGGCTTCTCACTCGAGTCT
TTTGTCCCCGTGCTGGTCGGTTTGCTGAATCGAGAACCTTTTCCAGACGTGATGCTTCTGGCAGCGAGGGCTTTAACTCACCTCTGCGATGCTCTCCCTTCGTCTTGTTCGGCCGTTGTGCATCACGGCGCAATCCCTGCTTTCTGTGCGCGCTTGCTTACCATTGAGTACATGGATTTGGCTGAACAGTCTTTGCAAGC
TTTGGAAAAGATTTCTCACAGGCATGCAGCTGCTTGTCTTCGTGGTGGTGCTCTTATGGCAGTACTGTCTTACCTAGATTTTTTCTCCACTGGTGTAAAGAGAGTAGCTTTATCAACAGCTGCAAACATTTGCAAACAACTTTCAGTTGATACTATTGCTTCTGCAATGGAAACAATTCCAACCTTGACTGGTCTTCTTT
CAGATAATGATACCAAGGTGGTAGAGAATGCATCGTTTTGCTTAGCTCGAATTGCAGAAGCTTGTGCTTCTTCTCCAGAAAACTTGAACAAACTCTCTAGCTACAGTCTGGTTTCACAAGCTGCAAATCTGATATCTGTCACTAACTCAGGCAGTGCCCGGGCATCTCTTAGTTCTTCAACATACACGGTTTTAATTAGG
CTTCTTTCAACTTGTGCAAGCAGCTCTGCTTTATCAACAAAGGAACTACTTGAAATGGGGATCTCTGGTATCCTTAGAGACATTCTAGCCGGCTCAGGCCTTGTTTCACAAATAGCTGTTCCTTTTTCATCAAATAGGCCTCCTGATCAGTTGTATGAAATTGTGTCCTTGGTGAATAAGCTTCTTCCATCATTACCTCA
TAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAATTCGTTCTACAAGGAAGCAAATTGGCAGAAATAATAGAGAAAATGTGGAGGGTATCAGTAAAACTGTGGCAGACGTTTCTGATCATGAAAAACTGTTACGTGAAAAACCTGAACTTTTGGTTCAGTTTGGAGCAGATCTCTTCCCAGTATTGGTTCAGG
TACATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGTTGCTGTACTTTAGTACAGAGGACATGTTAAAGTCTTTACTACAGGCAACAAACATACCAAGGTATATGACACCCACTATTAGTTTTAAATTGTCTGCAGGTTCTTCTACTACTGACATGTTTCTTGTATATCTGCAGTTT
TTTGGCAGGAGTTTTAACAGGGAAAGATGTTGAAGTTTTGGTTCCAGCACTTCAAATGGCAGAAATTCTAATGCAAAAGCTTCCTGGCACAATTTCCAAGCTCTTTACGAAGGAAGGTGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAA
GGCGTAACAAGCGACTACCTGGTGGGTCAACAAATGAAGCAATTAGAATAGAAGGATCCAAAGATAAAATGTCAGGAAAAGGTGGTGCACGTCCATCTGTTGGGACATTAACAATGACAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGA
GCTACAGATAGTCTTTGCAAATTAAAAGATCTCTGTAAAAAATTAAATGGTTATTTGACTGATCCAAAGTCCAAATCAAAAGGTAGGGGTAAAAGGACTGAACTTGTTGCTGTTAATAATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAG
AAGTGGACTTGTGGAAACTTTACTAAATTATTTTTCCGGGGGAGCTTTATCCAAAGAAAACTTGTCAGAAGTTGATTTGTTGAAGCATCACAAACAGGTATTGAAGAGGCTCCAGTCATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCAC
TAGCCTCTTTGGAACATTTTGAGTTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCAGCAGTATTGAATGCATTATCAAAGCCTTTGAAATTACGGCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAA
GATTTACTTTGGTCCAAAGTTCAGAGAAATGAAACTGAAACAAGATGTCATAGTAGTGAAGTACAACCTTGTGCCACATCTGCATCAACTCAATCTCAAGCAATACCTGCACAAGCTGCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAA
AGCATCAAGGGAAAAGGGAAAATCCATCTCAAGAAATGTCATTGATGACATCAGGGGCCCACAAACAAGAAGTGCAGCTAGGAGAAGAGCATCAATGGAAAGTTATTCACAAATCAAACAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATCGGAGAGGCTATACCTATGGAAG
ACGATTACTCTTCTGAAGAGGATGGAGAAGAAGATGACGAAGATGATGAAATTTACTTGGCAGAGCGAGTGTATGAGGCAGAGTTTGGGCATTCATCATATGCCAGTGCATTAGCTTCATCAACTGCAATAACTGCTGCTATGACTGGCCATGCATCTACTAGTGCCAAAGGAGCTATTGGGAGTAGAGACCACAGGACT
TTGCCTAATCATAGTAAGGCAAATGTCTGTCCTCGATTGAACTTTTTCATTGGTGGGAAACAGCTTGACAGGTCATCAACATTATACCAGGCAATTATGCATCATACTGTATCAGATGGATATGAACCAAGGTATGCTGGTTCAGATTTTCCTGGGTATGACAGTCGAAGGTTTTGGGATGAAGTTTACACTATTACCTA
TCAGAGCATAGCTGTGACAACCAAGAGGGATTTGACTGGAACAATTAAAACGTATTCTACTCCTAAGAATACTGAGTATATGTCACTTATAGATAGCATTTTGCAAAGAAAACTTCCCTGTGACCTTCAAAAATCAGATAGGACATATAATATTTTGTTGTTACTTAGAATAGTAGAAGGACTCAACTGTTTAGCTCCTT
CTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAGGGAAAATTGACAAGCCTAGATCAATTGAAAGTCAATGGTCCTGTTGTTCCCCAAGAAGAATTTTCAAGTAAAAAGTTGACACCAAAGTTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAA
GCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCACTAGGATTATCCCGTGCATTGCAGTATTTTCAGCAGCAGCAGAGTGCTGAAAATCCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGTCAAAAGGTTCGAGTATCAAGAAGGCGCATATTGGACTCAGC
TGTGAAGGTGATGGACATGTTTTGTTCTGGGCAGAAGGCTGTCCTTGAAGTTGAGTACCTTGGGGAGGTTGGCACTGGTTTAGGTCCAACTCTCGAGTTCTATACTCTTGTTAGTCATGAATTGCAAAGGAGTACACTTGGCATGTGGAGAACAAGCTCGTCACCTAAAGAAGCTGTAGAAAGGGATGTTCTGATGCCAG
ATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAATTTTGTCTTCTTGGGCGTCTAATGGCAAAA
GCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTTGATCGAAAGAAATTCTTGGAGTCAATACTTGGTGATAAGGAAGAGGCAATATCAAA
TTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTTTGGTCAACATCGATAACATGGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTCACAATTAGAGGCCTTCCGAACAGGATTCA
ATCAGGTGTTGCCCCTCTCATCTTTGCAAATATTTACTGAAAATGAGTTGGATTATCTTTTCTGCGGTGTGCGTAACTTGTGGGTGGCTGAAACTCTTACTGATCACATCAAATTTGATCATGGCTATACAGCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGGTAGAGTTCACCCCTACACAGCAGCAGGCA
TTTTTGCAGTTTATTACTGGTTGTCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGCAACTGGAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCTTACTCATCCAAGGAGGT
AATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTGTAATAATCTGGTCT
CTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTCATA
TAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAG
>TRINITY_DN109275_c1_g4_i5 from sample A3 / Example unspliced isoform:CTCTTTTTAATTTGTTCATCATCAGGGCGGATGCAAAGCAGGAATTGGCATCCGGTTAAACCCAAACCCGCAACACCACCACCGGAATTCCTCCCTTGCGTCAGGAGTTCGAAACGCAGACACACACTAACAACAGGCTTTTAAGTGCGAGGGAGCCGACGAACGGTCCGGGGAGCCCAGATAATTTTATGGAAACAAGG
AGCCGCAAGCGCGCGGAGGCCAAATCGCAGAGGCCAGCCGCTGTTAATACTTCTTCGGCCGCCGATAAGAGCAGCAGCGACGGTAAGAAACGAGCTAGAGTCGAACCGCCTCAATCGACCCCGTCTGCCCCCGCCCCCACTCCCACTCGTCGCTTGACTCGATCCTCTGCCCGCATGGAATCCCCAGCCGGAGCTTCTGC
TGCGAAGAAAGAAGAAATCGACAAGAAAGGGAAACGGGAAGCAACAGTGGACAGGGTTCGGGAACAGGAGCGGGAGCCGGACCGGAGGGAAATTCTGAGCGATTACTATGAAGAAGAGGAAAGCGGTGAAGATGATTACGCGGACGACGGCGACGATGAGGACCTAGGCGTCCGGAGCCATCACTACCCGCCCGCTGCGT
TCGAGGGCCGGCTACGGGAATTCACCGGTTACTATGATGTTATGCCCCCATCGGCCCCTCAGAACGGCCGGATGAAGGAAATTCTGTCGCGATTGCGAGATAATGGCGATGATTTCAGTCAGACGGAGGCGCTTACTGAATTGTGCAATGTTTTGTCCATGGCGACTGAAAACAGTCTCGCCGGCTTCTCACTCGAGTCT
TTTGTCCCCGTGCTGGTCGGTTTGCTGAATCGAGAACCTTTTCCAGACGTGATGCTTCTGGCAGCGAGGGCTTTAACTCACCTCTGCGATGCTCTCCCTTCGTCTTGTTCGGCCGTTGTGCATCACGGCGCAATCCCTGCTTTCTGTGCGCGCTTGCTTACCATTGAGTACATGGATTTGGCTGAACAGTCTTTGCAAGC
TTTGGAAAAGATTTCTCACAGGCATGCAGCTGCTTGTCTTCGTGGTGGTGCTCTTATGGCAGTACTGTCTTACCTAGATTTTTTCTCCACTGGTGTAAAGAGAGTAGCTTTATCAACAGCTGCAAACATTTGCAAACAACTTTCAGTTGATACTATTGCTTCTGCAATGGAAACAATTCCAACCTTGACTGGTCTTCTTT
CAGATAATGATACCAAGGTGGTAGAGAATGCATCGTTTTGCTTAGCTCGAATTGCAGAAGCTTGTGCTTCTTCTCCAGAAAACTTGAACAAACTCTCTAGCTACAGTCTGGTTTCACAAGCTGCAAATCTGATATCTGTCACTAACTCAGGCAGTGCCCGGGCATCTCTTAGTTCTTCAACATACACGGTTTTAATTAGG
CTTCTTTCAACTTGTGCAAGCAGCTCTGCTTTATCAACAAAGGAACTACTTGAAATGGGGATCTCTGGTATCCTTAGAGACATTCTAGCCGGCTCAGGCCTTGTTTCACAAATAGCTGTTCCTTTTTCATCAAATAGGCCTCCTGATCAGTTGTATGAAATTGTGTCCTTGGTGAATAAGCTTCTTCCATCATTACCTCA
TAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAATTCGTTCTACAAGGAAGCAAATTGGCAGAAATAATAGAGAAAATGTGGAGGGTATCAGTAAAACTGTGGCAGACGTTTCTGATCATGAAAAACTGTTACGTGAAAAACCTGAACTTTTGGTTCAGTTTGGAGCAGATCTCTTCCCAGTATTGGTTCAGG
TACATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGTTGCTGTACTTTAGTACAGAGGACATGTTAAAGTCTTTACTACAGGCAACAAACATACCAAGTTTTTTGGCAGGAGTTTTAACAGGGAAAGATGTTGAAGTTTTGGTTCCAGCACTTCAAATGGCAGAAATTCTAATGCAA
AAGCTTCCTGGCACAATTTCCAAGCTCTTTACGAAGGAAGGTGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAAGGCGTAACAAGCGACTACCTGGTGGGTCAACAAATGAAGCAATTAGAATAGAAGGATCCAAAGATAAAATGTCAGG
AAAAGGTGGTGCACGTCCATCTGTTGGGACATTAACAATGACAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGAGCTACAGATAGTCTTTGCAAATTAAAAGATCTCTGTAAAAAATTAAATGGTTATTTGACTGATCCAAAGTCCAAAT
CAAAAGGTAGGGGTAAAAGGACTGAACTTGTTGCTGTTAATAATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAGAAGTGGACTTGTGGAAACTTTACTAAATTATTTTTCCGGGGGAGCTTTATCCAAAGAAAACTTGTCAGAAGTTGAT
TTGTTGAAGCATCACAAACAGGTATTGAAGAGGCTCCAGTCATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCACTAGCCTCTTTGGAACATTTTGAGTTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCAGC
AGTATTGAATGCATTATCAAAGCCTTTGAAATTACGGCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAAGATTTACTTTGGTCCAAAGTTCAGAGAAATGAAACTGAAACAAGATGTCATAGTAGTGAAGTACAACCTTGTGCCA
CATCTGCATCAACTCAATCTCAAGCAATACCTGCACAAGCTGCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAAAGCATCAAGGGAAAAGGGAAAATCCATCTCAAGAAATGTCATTGATGACATCAGGGGCCCACAAACAAGAAGTGCA
GCTAGGAGAAGAGCATCAATGGAAAGTTATTCACAAATCAAACAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATCGGAGAGGCTATACCTATGGAAGACGATTACTCTTCTGAAGAGGATGGAGAAGAAGATGACGAAGATGATGAAATTTACTTGGCAGAGCGAGTGTATGA
GGCAGAGTTTGGGCATTCATCATATGCCAGTGCATTAGCTTCATCAACTGCAATAACTGCTGCTATGACTGGCCATGCATCTACTAGTGCCAAAGGAGCTATTGGGAGTAGAGACCACAGGACTTTGCCTAATCATAGTAAGGCAAATGTCTGTCCTCGATTGAACTTTTTCATTGGTGGGAAACAGCTTGACAGGTCAT
CAACATTATACCAGGCAATTATGCATCATACTGTATCAGATGGATATGAACCAAGGTATGCTGGTTCAGATTTTCCTGGGTATGACAGTCGAAGGTTTTGGGATGAAGTTTACACTATTACCTATCAGAGCATAGCTGTGACAACCAAGAGGGATTTGACTGGAACAATTAAAACGTATTCTACTCCTAAGAATACTGAG
TATATGTCACTTATAGATAGCATTTTGCAAAGAAAACTTCCCTGTGACCTTCAAAAATCAGATAGGACATATAATATTTTGTTGTTACTTAGAATAGTAGAAGGACTCAACTGTTTAGCTCCTTCTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAGGGAAAATTGACAAGCCTAGATCAATTGAAAGTCAATGG
TCCTGTTGTTCCCCAAGAAGAATTTTCAAGTAAAAAGTTGACACCAAAGTTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAAGCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCACTAGGATTATCCCGTGCAT
TGCAGTATTTTCAGCAGCAGCAGAGTGCTGAAAATCCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGTCAAAAGGTTCGAGTATCAAGAAGGCGCATATTGGACTCAGCTGTGAAGGTGATGGACATGTTTTGTTCTGGGCAGAAGGCTGTCCTTGAAGTTGAGTACCTTGGGGAGGTTGGCACT
GGTTTAGGTCCAACTCTCGAGTTCTATACTCTTGTTAGTCATGAATTGCAAAGGAGTACACTTGGCATGTGGAGAACAAGCTCGTCACCTAAAGAAGCTGTAGAAAGGGATGTTCTGATGCCAGATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATG
GTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAATTTTGTCTTCTTGGGCGTCTAATGGCAAAAGCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTG
ATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTTGATCGAAAGAAATTCTTGGAGTCAATACTTGGTGATAAGGAAGAGGCAATATCAAATTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTC
AAACCAGGGGGGAACAACATTTTGGTCAACATCGATAACATGGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTCACAATTAGAGGCCTTCCGAACAGGATTCAATCAGGTGTTGCCCCTCTCATCTTTGCAAATATTTACTGAAAATGAGTTGGATTATCTTTTCTGCGGTGTGCGTAA
CTTGTGGGTGgtatgtaaaatctgatcttttaaaatttgagctattcttgatccatgttctctcaggaaagaactcttaatatgtgacatgtttcaacagGCTGAAACTCTTACTGATCACATCAAATTTGATCATGGCTATACAGCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGGTAGAGTTCACCCCTA
CACAGCAGCAGGCATTTTTGCAGTTTATTACTGGTTGTCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGCAACTGGAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCTTAC
TCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTG
TAATAATCTGGTCTCTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATC
CATTTCGTCTCATATAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAG
Intron 5 GTATATGACA ... ATATCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.72 | 88 | 10 | 23 |
| A2 | 11.48 | 54 | 9.5 | 7 |
| A3 | 11.43 | 62 | 8.5 | 8 |
| A4 | 8.33 | 77 | 11 | 7 |
| A5 | 11.54 | 23 | 3 | 3 |
| A6 | 0 | 16 | 3.5 | 0 |
| A7 | 6.25 | 15 | 3 | 1 |
| A8 | 0 | 3 | 0 | 0 |
| A9 | 0 | 12 | 0.5 | 0 |
| A10 | 25.53 | 35 | 1.5 | 12 |
>TRINITY_DN117110_c12_g2_i5 from sample A1 / Example spliced isoformAAATTCGCTTTTGATCTTCCACTTCCTCTGCCTTCTCTTTTTAATTTGTTCATCATCAGGGCGGATGCAAAGCAGGAATTGGCATCCGGTTAAACCCAAACCCGCAACACCACCACCGGAATTCCTCCCTTGCGTCAGGAGTTCGAAACGCAGACACACACTAACAACAGGCTTTTAAGTGCGAGGGAGCCGACGAACGG
TCCGGGGAGCCCAGATAATTTTATGGAAACAAGGAGCCGCAAGCGCGCGGAGGCCAAATCGCAGAGGCCAGCCGCTGTTAATACTTCTTCGGCCGCCGATAAGAGCAGCAGCGACGGTAAGAAACGAGCTAGAGTCGAACCGCCTCAATCGACCCCGTCTGCCCCCGCCCCCACTCCCACTCGTCGCTTGACTCGATCCT
CTGCCCGCATGGAATCCCCAGCCGGAGCTTCTGCTGCGAAGAAAGAAGAAATCGACAAGAAAGGGAAACGGGAAGCAACAGTGGACAGGGTTCGGGAACAGGAGCGGGAGCCGGACCGGAGGGAAATTCTGAGCGATTACTATGAAGAAGAGGAAAGCGGTGAAGATGATTACGCGGACGACGGCGACGATGAGGACCTA
GGCGTCCGGAGCCATCACTACCCGCCCGCTGCGTTCGAGGGCCGGCTACGGGAATTCACCGGTTACTATGATGTTATGCCCCCATCGGCCCCTCAGAACGGCCGGATGAAGGAAATTCTGTCGCGATTGCGAGATAATGGCGATGATTTCAGTCAGACGGAGGCGCTTACTGAATTGTGCAATGTTTTGTCCATGGCGAC
TGAAAACAGTCTCGCCGGCTTCTCACTCGAGTCTTTTGTCCCCGTGCTGGTCGGTTTGCTGAATCGAGAACCTTTTCCAGACGTGATGCTTCTGGCAGCGAGGGCTTTAACTCACCTCTGCGATGCTCTCCCTTCGTCTTGTTCGGCCGTTGTGCATCACGGCGCAATCCCTGCTTTCTGTGCGCGCTTGCTTACCATTG
AGTACATGGATTTGGCTGAACAGTCTTTGCAAGCTTTGGAAAAGATTTCTCACAGGCATGCAGCTGCTTGTCTTCGTGGTGGTGCTCTTATGGCAGTACTGTCTTACCTAGATTTTTTCTCCACTGGTGTAAAGAGAGTAGCTTTATCAACAGCTGCAAACATTTGCAAACAACTTTCAGTTGATACTATTGCTTCTGCA
ATGGAAACAATTCCAACCTTGACTGGTCTTCTTTCAGATAATGATACCAAGGTGGTAGAGAATGCATCGTTTTGCTTAGCTCGAATTGCAGAAGCTTGTGCTTCTTCTCCAGAAAACTTGAACAAACTCTCTAGCTACAGTCTGGTTTCACAAGCTGCAAATCTGATATCTGTCACTAACTCAGGCAGTGCCCGGGCATC
TCTTAGTTCTTCAACATACACGGTTTTAATTAGGCTTCTTTCAACTTGTGCAAGCAGCTCTGCTTTATCAACAAAGGAACTACTTGAAATGGGGATCTCTGGTATCCTTAGAGACATTCTAGCCGGCTCAGGCCTTGTTTCACAAATAGCTGTTCCTTTTTCATCAAATAGGCCTCCTGATCAGTTGTATGAAATTGTGT
CCTTGGTGAATAAGCTTCTTCCATCATTACCTCATAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAATTCGTTCTACAAGGAAGCAAATTGGCAGAAATAATAGAGAAAATGTGGAGGGTATCAGTAAAACTGTGGCAGACGTTTCTGATCATGAAAAACTGTTACGTGAAAAACCTGAACTTTTGGTTCAG
TTTGGAGCAGATCTCTTCCCAGTATTGGTTCAGGTACATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGTTGCTGTACTTTAGTACAGAGGACATGTTAAAGTCTTTACTACAGGCAACAAACATACCAAGTTTTTTGGCAGGAGTTTTAACAGGGAAAGATGTTGAAGTTTTGGT
TCCAGCACTTCAAATGGCAGAAATTCTAATGCAAAAGCTTCCTGGCACAATTTCCAAGCTCTTTACGAAGGAAGGTGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAAGGCGTAACAAGCGACTACCTGGTGGGTCAACAAATGAAGCAA
TTAGAATAGAAGGATCCAAAGATAAAATGTCAGGAAAAGGTGGTGCACGTCCATCTGTTGGGACATTAACAATGACAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGAGCTACAGATAGTCTTTGCAAATTAAAAGATCTCTGTAAAAAA
TTAAATGGTTATTTGACTGATCCAAAGTCCAAATCAAAAGGTAGGGGTAAAAGGACTGAACTTGTTGCTGTTAATAATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAGAAGTGGACTTGTGGAAACTTTACTAAATTATTTTTCCGGGGG
AGCTTTATCCAAAGAAAACTTGTCAGAAGTTGATTTGTTGAAGCATCACAAACAGGTATTGAAGAGGCTCCAGTCATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCACTAGCCTCTTTGGAACATTTTGAGTTGGTTTTGAACCATATTC
CAAATTCACACAGTGCTAATACTAGCATTTCAGCAGTATTGAATGCATTATCAAAGCCTTTGAAATTACGGCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAAGATTTACTTTGGTCCAAAGTTCAGAGAAATGAAACTGAAACA
AGATGTCATAGTAGTGAAGTACAACCTTGTGCCACATCTGCATCAACTCAATCTCAAGCAATACCTGCACAAGCTGCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAAAGCATCAAGGGAAAAGGGAAAATCCATCTCAAGAAATGTCAT
TGATGACGTCAGGGGCCCACAAACAAGAAGTGCAGCTAGGAGAAGAGCATCAATGGAAAGTTATTCACAAATCAAACAACAAAATGGAGAGTCTAGTGATGAGGTATTCATTCTGTTTTCTTTTGTTGCTCCCACTAAATAGTTAGCATTGCTTTTGGGCATAATCAAATTTTTTATTGGTATTTAGATGTAGACATAGA
ACAGTTATTTGACCCACATAAGCATAGGTTAAGTACTGTACTTGGAAATTAGACAACCAACATAGATCTATCTTAAACCTGGATCTATCAAGCATTGAGAGGC
>TRINITY_DN117110_c12_g2_i2 from sample A1 / Example unspliced isoform:CTACAGGCAACAAACATACCAAGgtatatgacacccactattagttttaaattgtctgcaggttcttctactactgacatgtttcttgtatatctgcagTTTTTTGGCAGGAGTTTTAACAGGGAAAGATGTTGAAGTTTTGGTTCCAGCACTTCAAATGGCAGAAATTCTAATGCAAAAGCTTCCTGGCACAATTTCCA
AGCTCTTTACGAAGGAAGGTGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAAGGCGTAACAAGCGACTACCTGGTGGGTCAACAAATGAAGCAATTAGAATAGAAGGATCCAAAGATAAAATGTCAGGAAAAGGTGGTGCACGTCCATCT
GTTGGGACATTAACAATGACAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGAGCTACAGATAGTCTTTGCAAATTAAAAGATCTCTGTAAAAAATTAAATGGTTATTTGACTGATCCAAAGTCCAAATCAAAAGGTAGGGGTAAAAGGAC
TGAACTTGTTGCTGTTAATAATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAGAAGTGGACTTGTGGAAACTTTACTAAATTATTTTTCCGGGGGAGCTTTATCCAAAGAAAACTTGTCAGAAGTTGATTTGTTGAAGCATCACAAACAGG
TATTGAAGAGGCTCCAGTCATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCACTAGCCTCTTTGGAACATTTTGAGTTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCAGCAGTATTGAATGCATTATCAAAG
CCTTTGAAATTACGGCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAAGATTTACTTTGGTCCAAAGTTCAGAGAAATGAAACTGAAACAAGATGTCATAGTAGTGAAGTACAACCTTGTGCCACATCTGCATCAACTCAATCTCA
AGCAATACCTGCACAAGCTGCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAAAGCATCAAGGGAAAAGGGAAAATCCATCTCAAGAAATGTCATTGATGACGTCAGGGGCCCACAAACAAGAAGTGCAGCTAGGAGAAGAGCATCAATGG
AAAGTTATTCACAAATCAAACAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATCGGAGAGGCTATACCTATGGAAGACGATTACTCTTCTGAAGAGGATGGAGAAGAAGATGACGAAGATGATGAAATTTACTTGGCAGAGCGAGTGTATGAGGCAGAGTTTGGGCATTCATCA
TATGCCAGTGCATTAGCTTCATCAACTGCAATAACTGCTGCTATGACTGGCCATGCATCTACTAGTGCCAAAGGAGCTATTGGGAGTAGAGACCACAGGACTTTGCCTAATCATAGTAAGGCAAATGTCTGTCCTCGATTGAACTTTTTCATTGGTGGGAAACAGCTTGACAGGTCATCAACATTATACCAGGCAATTAT
GCATCATACTGTATCAGATGGATATGAACCAAGGTATGCTGGTTCAGATTTTCCTGGGTATGACAGTCGAAGGTTTTGGGATGAAGTTTACACTATTACCTATCAGAGCATAGCTGTGACAACCAAGAGGGATTTGACTGGAACAATTAAAACGTATTCTACTCCTAAGAATACTGAGTATATGTCACTTATAGATAGCA
TTTTGCAAAGAAAACTTCCCTGTGACCTTCAAAAATCAGATAGGACATATAATATTTTGTTGTTACTTAGAATAGTAGAAGGACTCAACTGTTTAGCTCCTTCTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAGGGAAAATTGACAAGCCTAGATCAATTGAAAGTCAATGGTCCTGTTGTTCCCCAAGAAGAA
TTTTCAAGTAAAAAGTTGACACCAAAGTTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAAGCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCACTAGGATTATCCCGTGCATTGCAGTATTTTCAGCAGCAGCA
GAGTGCTGAAAATCCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGTCAAAAGGTTCGAGTATCAAGAAGGCGCATATTGGACTCAGCTGTGAAGGTGATGGACATGTTTTGTTCTGGGCAGAAGGCTGTCCTTGAAGTTGAGTACCTTGGGGAGGTTGGCACTGGTTTAGGTCCAACTCTCGAGT
TCTATACTCTTGTTAGTCATGAATTGCAAAGGAGTACACTTGGCATGTGGAGAACAAGCTCGTCACCTAAAGAAGCTGTAGAAAGGGATGTTCTGATGCCAGATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGC
TTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAATTTTGTCTTCTTGGGCGTCTAATGGCAAAAGCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTT
TGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTCGATCGAAAGAAATTCTTGGAGTCAATACTTGGTGATAAGGAAGAGGCAATATCAAATTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTT
TGGTCAACATCGATAACATGGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTCACAATTAGAGGCCTTCCGAACAGGATTCAATCAGGTGTTGCCCCTCTCATCTTTGCAAATATTTACTGAAAATGAGTTGGATTATCTTTTCTGCGGTGTGCGTAACTTGTGGGTGGCTGAAACTCTT
ACTGATCACATCAAATTTGATCATGGCTATACAGCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGGTAGAGTTCACCCCTACACAGCAGCAGGCATTTTTGCAGTTTATTACTGGTTGTCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGC
AACTGGAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCTTACTCATCCAAGGAGGTAATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGG
TTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTGTAATAATCTGGTCTCTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTAC
TATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTCATATAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCC
GGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAGATTTTAATATATCGTGTTTGGGTGGCCTATGTTATTCCCTTTTTAGTACGAAC
Intron 6 GTTTGTAGTG ... ATTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.63 | 81 | 3 | 15 |
| A2 | 17.33 | 62 | 3.4 | 13 |
| A3 | 24.59 | 46 | 2.4 | 15 |
| A4 | 18.18 | 72 | 2.2 | 16 |
| A5 | 15.69 | 43 | 0.6 | 8 |
| A6 | 16.49 | 238 | 8.4 | 47 |
| A7 | 16.54 | 217 | 8.4 | 43 |
| A8 | 22 | 312 | 7.6 | 88 |
| A9 | 21.63 | 221 | 5.4 | 61 |
| A10 | 16.86 | 143 | 7.4 | 29 |
>TRINITY_DN109275_c1_g4_i3 from sample A3 / Example spliced isoformCTCTTTTTAATTTGTTCATCATCAGGGCGGATGCAAAGCAGGAATTGGCATCCGGTTAAACCCAAACCCGCAACACCACCACCGGAATTCCTCCCTTGCGTCAGGAGTTCGAAACGCAGACACACACTAACAACAGGCTTTTAAGTGCGAGGGAGCCGACGAACGGTCCGGGGAGCCCAGATAATTTTATGGAAACAAGG
AGCCGCAAGCGCGCGGAGGCCAAATCGCAGAGGCCAGCCGCTGTTAATACTTCTTCGGCCGCCGATAAGAGCAGCAGCGACGGTAAGAAACGAGCTAGAGTCGAACCGCCTCAATCGACCCCGTCTGCCCCCGCCCCCACTCCCACTCGTCGCTTGACTCGATCCTCTGCCCGCATGGAATCCCCAGCCGGAGCTTCTGC
TGCGAAGAAAGAAGAAATCGACAAGAAAGGGAAACGGGAAGCAACAGTGGACAGGGTTCGGGAACAGGAGCGGGAGCCGGACCGGAGGGAAATTCTGAGCGATTACTATGAAGAAGAGGAAAGCGGTGAAGATGATTACGCGGACGACGGCGACGATGAGGACCTAGGCGTCCGGAGCCATCACTACCCGCCCGCTGCGT
TCGAGGGCCGGCTACGGGAATTCACCGGTTACTATGATGTTATGCCCCCATCGGCCCCTCAGAACGGCCGGATGAAGGAAATTCTGTCGCGATTGCGAGATAATGGCGATGATTTCAGTCAGACGGAGGCGCTTACTGAATTGTGCAATGTTTTGTCCATGGCGACTGAAAACAGTCTCGCCGGCTTCTCACTCGAGTCT
TTTGTCCCCGTGCTGGTCGGTTTGCTGAATCGAGAACCTTTTCCAGACGTGATGCTTCTGGCAGCGAGGGCTTTAACTCACCTCTGCGATGCTCTCCCTTCGTCTTGTTCGGCCGTTGTGCATCACGGCGCAATCCCTGCTTTCTGTGCGCGCTTGCTTACCATTGAGTACATGGATTTGGCTGAACAGTCTTTGCAAGC
TTTGGAAAAGATTTCTCACAGGCATGCAGCTGCTTGTCTTCGTGGTGGTGCTCTTATGGCAGTACTGTCTTACCTAGATTTTTTCTCCACTGGTGTAAAGAGAGTAGCTTTATCAACAGCTGCAAACATTTGCAAACAACTTTCAGTTGATACTATTGCTTCTGCAATGGAAACAATTCCAACCTTGACTGGTCTTCTTT
CAGATAATGATACCAAGGTGGTAGAGAATGCATCGTTTTGCTTAGCTCGAATTGCAGAAGCTTGTGCTTCTTCTCCAGAAAACTTGAACAAACTCTCTAGCTACAGTCTGGTTTCACAAGCTGCAAATCTGATATCTGTCACTAACTCAGGCAGTGCCCGGGCATCTCTTAGTTCTTCAACATACACGGTTTTAATTAGG
CTTCTTTCAACTTGTGCAAGCAGCTCTGCTTTATCAACAAAGGAACTACTTGAAATGGGGATCTCTGGTATCCTTAGAGACATTCTAGCCGGCTCAGGCCTTGTTTCACAAATAGCTGTTCCTTTTTCATCAAATAGGCCTCCTGATCAGTTGTATGAAATTGTGTCCTTGGTGAATAAGCTTCTTCCATCATTACCTCA
TAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAATTCGTTCTACAAGGAAGCAAATTGGCAGAAATAATAGAGAAAATGTGGAGGGTATCAGTAAAACTGTGGCAGACGTTTCTGATCATGAAAAACTGTTACGTGAAAAACCTGAACTTTTGGTTCAGTTTGGAGCAGATCTCTTCCCAGTATTGGTTCAGG
TACATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGTTGCTGTACTTTAGTACAGAGGACATGTTAAAGTCTTTACTACAGGCAACAAACATACCAAGGTATATGACACCCACTATTAGTTTTAAATTGTCTGCAGGTTCTTCTACTACTGACATGTTTCTTGTATATCTGCAGTTT
TTTGGCAGGAGTTTTAACAGGGAAAGATGTTGAAGTTTTGGTTCCAGCACTTCAAATGGCAGAAATTCTAATGCAAAAGCTTCCTGGCACAATTTCCAAGCTCTTTACGAAGGAAGGTGTTGTCCATGCAGTAGATATGCTTATATCCTCAGATTCACGATCAGCTGTAAATGAAAGTGCTACAATGCTACCAACTCTAA
GGCGTAACAAGCGACTACCTGGTGGGTCAACAAATGAAGCAATTAGAATAGAAGGATCCAAAGATAAAATGTCAGGAAAAGGTGGTGCACGTCCATCTGTTGGGACATTAACAATGACAAATGTTAAGTCGGATATTAGTGCCTATGCAAAGCATTTTAAAGATACCTATTTTTCTGTAGATTCAGGTGTTGATGCTGGA
GCTACAGATAGTCTTTGCAAATTAAAAGATCTCTGTAAAAAATTAAATGGTTATTTGACTGATCCAAAGTCCAAATCAAAAGGTAGGGGTAAAAGGACTGAACTTGTTGCTGTTAATAATGATCAGTTACTAAGTATTATAGCTGATATACTAACAGAGATTAGTGAAGGGGATGGAGTATCAACTTTTGAATTTGTTAG
AAGTGGACTTGTGGAAACTTTACTAAATTATTTTTCCGGGGGAGCTTTATCCAAAGAAAACTTGTCAGAAGTTGATTTGTTGAAGCATCACAAACAGGTATTGAAGAGGCTCCAGTCATTTGTTGAACTCTCTCTTCCAGTGAATTATGAACAGAGAGAAACTCCTCTAACAAGTTTAGTGCGGAAGCTACATGATGCAC
TAGCCTCTTTGGAACATTTTGAGTTGGTTTTGAACCATATTCCAAATTCACACAGTGCTAATACTAGCATTTCAGCAGTATTGAATGCATTATCAAAGCCTTTGAAATTACGGCTTTGTAGAGCACAAGGAGAAAAGTCTCTTCGTGATCACTCTAGTGTTCTATTTATGAACCCTTTGGCTAGTTGTGCTGACCTTGAA
GATTTACTTTGGTCCAAAGTTCAGAGAAATGAAACTGAAACAAGATGTCATAGTAGTGAAGTACAACCTTGTGCCACATCTGCATCAACTCAATCTCAAGCAATACCTGCACAAGCTGCTGAAAGTCGGCCTTCAACAAGATCCAGGTCGTTTATTGTATTGGGAAGTTCTACAAATGCCATGGACACTTCACATTCGAA
AGCATCAAGGGAAAAGGGAAAATCCATCTCAAGAAATGTCATTGATGACATCAGGGGCCCACAAACAAGAAGTGCAGCTAGGAGAAGAGCATCAATGGAAAGTTATTCACAAATCAAACAACAAAATGGAGAGTCTAGTGATGAGGATGAGGATCATGATTTCACTCCTGTTGAGATCGGAGAGGCTATACCTATGGAAG
ACGATTACTCTTCTGAAGAGGATGGAGAAGAAGATGACGAAGATGATGAAATTTACTTGGCAGAGCGAGTGTATGAGGCAGAGTTTGGGCATTCATCATATGCCAGTGCATTAGCTTCATCAACTGCAATAACTGCTGCTATGACTGGCCATGCATCTACTAGTGCCAAAGGAGCTATTGGGAGTAGAGACCACAGGACT
TTGCCTAATCATAGTAAGGCAAATGTCTGTCCTCGATTGAACTTTTTCATTGGTGGGAAACAGCTTGACAGGTCATCAACATTATACCAGGCAATTATGCATCATACTGTATCAGATGGATATGAACCAAGGTATGCTGGTTCAGATTTTCCTGGGTATGACAGTCGAAGGTTTTGGGATGAAGTTTACACTATTACCTA
TCAGAGCATAGCTGTGACAACCAAGAGGGATTTGACTGGAACAATTAAAACGTATTCTACTCCTAAGAATACTGAGTATATGTCACTTATAGATAGCATTTTGCAAAGAAAACTTCCCTGTGACCTTCAAAAATCAGATAGGACATATAATATTTTGTTGTTACTTAGAATAGTAGAAGGACTCAACTGTTTAGCTCCTT
CTTTGAGAGCTCAGGCCTCATCTGATGCTTTTGCAGAGGGAAAATTGACAAGCCTAGATCAATTGAAAGTCAATGGTCCTGTTGTTCCCCAAGAAGAATTTTCAAGTAAAAAGTTGACACCAAAGTTGACACGCCAGATGCAAGATGCTCTGGCATTATGTAGTGGTAGTATGCCACCTTGGTGTCAAGAACTGACCAAA
GCCTGTCCATTTCTGTTTCCATTTGAGACAAGGAGGCAATATTTTTATTCCACTGCACTAGGATTATCCCGTGCATTGCAGTATTTTCAGCAGCAGCAGAGTGCTGAAAATCCAAATTTGGTAAACAATCGTGGACGTAATGTTGTTAGACTGGAACGTCAAAAGGTTCGAGTATCAAGAAGGCGCATATTGGACTCAGC
TGTGAAGGTGATGGACATGTTTTGTTCTGGGCAGAAGGCTGTCCTTGAAGTTGAGTACCTTGGGGAGGTTGGCACTGGTTTAGGTCCAACTCTCGAGTTCTATACTCTTGTTAGTCATGAATTGCAAAGGAGTACACTTGGCATGTGGAGAACAAGCTCGTCACCTAAAGAAGCTGTAGAAAGGGATGTTCTGATGCCAG
ATGCTGAAGAAGATAATTTGTCTATGTCAGCTGCAAAGAATGATGGACACCAGGGGTATACAAACCAAAGTGGATGGTTTGTTCAAGCACCTCTTGGCTTATTTCCTCGTCCATATTGTTCTAATATGGATTCTTCAAATGAAAGTGGATTTTCCAAAGTGAGAGATAAATTTTGTCTTCTTGGGCGTCTAATGGCAAAA
GCTCTTCAGGATGGCAGGCTTCTGGACTTGCCTCTGTCAACAGCTTTTTATAAACTTGTTCTTGGGCAGGAGCTTGATTTACATGATATCAGGTCCTTTGATCTTCAACTTGGTCAAACTTTGCAAGAAATGGAAGCCCTAGTTGATCGAAAGAAATTCTTGGAGTCAATACTTGGTGATAAGGAAGAGGCAATATCAAA
TTTATCCTATCGTGGTGCAAGAATTGAAGATCTTTGTATTGATTTCACTCTTCCCGGTTACCCTGACTATCCTCTCAAACCAGGGGGGAACAACATTTTGGTCAACATCGATAACATGGAAGAATACGTGTCATTAGTTGTGGACGCAACTATCAAAATAGGAGTCATGTCACAATTAGAGGCCTTCCGAACAGGATTCA
ATCAGGTGTTGCCCCTCTCATCTTTGCAAATATTTACTGAAAATGAGTTGGATTATCTTTTCTGCGGTGTGCGTAACTTGTGGGTGGCTGAAACTCTTACTGATCACATCAAATTTGATCATGGCTATACAGCTCAAAGCTCTCCCATTTTGAATCTTCTTGAAATCATGGTAGAGTTCACCCCTACACAGCAGCAGGCA
TTTTTGCAGTTTATTACTGGTTGTCCAAGACTTCCTCCTGGAGGGTTGGGTGCTCTAAACCCAAAATTAACTGTTGTTCGGAAGAATTTTTCAGGAGCAACTGGAGATCCAAATTCAGAAAAAACAATGGATGCAGAATTGCCGAGTGTTATGACTTGTGCAAATTACCTCAAACTTCCTCCTTACTCATCCAAGGAGGT
AATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGGTAATCCTTTGGTTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTGTAATAATCTGGTCT
CTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTCCTTTCACCTACTATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTCATA
TAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTTGTATTCAGGCCGGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAG
>TRINITY_DN109275_c1_g4_i4 from sample A3 / Example unspliced isoform:TACCTCAAACGTCCTCCTTACTCATCCAAGgtttgtagtgctgtcagattataagctcctatgccgtaattaatatatggtgttcctaatgatgcaaaatttttgcagGAGGTAATGCGTGATAGGCTGTTATATGCCATTACTGAAGGGCAAGGGTCTTTTGACCTATCGTGAGTTTTGTGTGTAGAAGAAAAATCTGG
TAATCCTTTGGTTCAAAGGCAGGGTGATAATCTGCATTATTCGACTCTTCAAGCATCAAATACTGACAAATGATGAAATCCATGACATGTAAATATCTGTAATAATCTGGTCTCTTTTTACTTAATCACAATGTAATCTGGTCACCACTCTGCGATTGTTGTTGACTAAGTATGCAACAGAATTGACGAGGCTTCCCTTC
CTTTCACCTACTATGCTAGTAGCAGGGCATTCAATTTGGGCAAATTATATGATATGCCCAGCTCATGGTTGTATTCATTATATCAATCATTGAATTATCCATTTCGTCTCATATAATTATGATGTAAAGTTTTGATCCAAATTGTTCTCATGTCGTTTAAATTGCTTTTTGAATGAAAAGGTAGCCTTTCTCCTGAATTT
GTATTCAGGCCGGTTGCTGTCAACTTGTTCAGTGGTTTATGTGCACGTTTTTTTTTGCTCTGGACATTATACAGAAG