sp|Q8RWH3|YAK1_ARATH ----> Dual specificity protein kinase YAK1 homolog
Intron 1 GTACGTATCA ... TACTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 6 | 17 | 13 |
| A2 | 63.64 | 4 | 7 | 7 |
| A3 | 57.89 | 4 | 4 | 7 |
| A4 | 80.95 | 2 | 17 | 0 |
| A5 | 100 | 0 | 2 | 1 |
| A6 | 53.46 | 37 | 36 | 49 |
| A7 | 60 | 36 | 46 | 62 |
| A8 | 59.38 | 65 | 83 | 107 |
| A9 | 54.5 | 43 | 56 | 47 |
| A10 | 43.53 | 24 | 28 | 9 |
>TRINITY_DN39968_c0_g1_i2 from sample A6 / Example spliced isoformGCTATCGGCAAGTCGGGGGATGTCAGAAGATTTATCCGACCGACTTTCCGGATTCGCAACCGCCGCCGATGGTGATTGCTTTAGTGAATCTCCTATTGATTTCCCCTGCCCAAATTGGGTTGATTACCCTTGCCAAAATTGGGAATCCGATACATATGAAGATGATGATGATCCTGGGTACCATAGACAACAAATTGAAG
ATAAAGCGTGGTTTTTGGCTCACGAAATTGATCATCCTAGTGGCGATGAAGAGGTGAAGTTGGAGAATGATTGTAGTCCGGATGAGGATCCTGGAAAATGGGGTGGAGATATCAAATCTGTTACGGAAGAAGAACCTTGGGAACCAAGGTTGAGGAATATGCTCAAGGAAAGAGTACAACCCAATGTGGATGGTGTGATT
GTCCTCCATGAAAATAATGATGTAAAAGTCTATGAAGGAGATTTTGTAGACTTGTTAAAGATGAGAAATCCTTGGCATTGTGTAAACAAAGATACACAGGTGAAAGATAGTGATAAGGATGATTGCGGCAAAGGGCATTACCATTGCTCAACAGAACGTGGTGCTACATTTCCTGAAATGGCAAGATTAGATAGCATATT
GATAAACAATGATTTATCAGTTTCAGAAATTGAGTGCATGACAGAGGAAAACAGCGGAGGAGATATGGAAAAATCAAGAAAGGGAGGGTCAGGGGTTGAGGAATCCATGCATGTTTCATATTGGGAAAGTTCCAGTTTTCAGGAGTGTTTGGTTCCGTCTAGAATTGATCATCTTGAGTCAGAGTATGCAGCAATGAGGC
CTCTTGAAGATGATTATGTCGAGCAATATGGATTTCGTGCATACTACAATGAGTCATCAGGGCAGAATTTAGACTTGCAATTACCAGACAAAGATTTACAGGAACAGTGCTCCACGTTGGTTGGTTTGCATTCAACTGATCGGAAATGCCTGAGTGTTGAATCTTCCTTCAGCAGCAGTGTGAAGAGTAAAGAAATTCTC
AGCTTGGGTCTTTATGAACATTCAGATTTGTCTTCTCAGACCACTAATGACGATCTTTGCATGGAAGCAAGAGGGGAGGGTAAAGAAGAACATGATATATGCGAAGAAAGAGTCTGTGAAGATTCTATAGCAGCAGAGGATGAAGATATGGAAGCTGTGCAGGACCAGATTCAGAGAATAGTTAGTGATGAAGATGAATA
CGAGGAATTTGATCTAAAGATTATACACAGGAAAAACAGAACTGGGTTCGAAGAGGAAAAAGATATATTTGTTGAGATAAATTCTGTGATAGCTGGGCGATATCATGTTAGTGAATACCTGGGGTCAGCTGCATTCAGTAAAGCTATTCAGGCACATGATCTGCATACGGGAATGGACGTTTGTATGAAAATAATTAAAA
ACAACAAAGATTTTTTTGATCAGAGCCTGGATGAGATCAAACTTCTTAAGTATGTAAATAAGCATGATCCTGCAGACAGATATCACATCTTGCGTCTTTATGATTATTTCTATCATCGGGAGCATCTTTTCATAGTATGTGAACTGCTGAGAGCTAATTTATATGAGTTCCAAAAATTCAATAAAGAATCAGGTGGGGAG
GTTTATTTCACTATGCCTCGTTTACAGTCTATAACTCGTCAATGCTTGGAGGCTTTGGATTTCTTACATGGTTTAGGACTTATTCACTGTGATCTGAAGCCTGAAAACATTCTTGTAAAAAGTTACAGTCGGTGTGAAATAAAAGTTATAGATCTTGGGAGCAGTTGTTTTCAAACAGATCACTTATGTTCATATGTACA
GTCACGCTCCTATCGTGCACCAGAAGTCATTCTGGGCCTGCCATATGATAAAAAAATTGACATCTGGTCCCTCGGCTGTATCTTGGCAGAACTTTGCTCTGGAAATGTCCTTTTTCAAAATGATTCCTTGGCAACATTGCTTGCACGTATAATAGGTATACTTGGTCCAATAGATCCAGAGATGCTTGCTAAAGGACAGG
ATACACACAAATATTTCACTAAGAACCATGTGTTGTATGAGCGGATTGAGGAAACTGAGCAATTGGAATATATTCTTCCCAAAAAAACATCACTAAGTCATCGTCTTCCCTCAGCAGACCCTGGTTTTGTTGAGTTTGTTGGATACCTGCTCCAGATTAATCCACTGTATCGTCCAACTGCCAAAGAAGCAAAGGAGCAT
CCGTGGCTTTCCTACCCTTACGAGCCGATTTCTGGTTGACATGTTTATTTGGAAGTTAGCTTCTGACTTGTTTGGAGCCAGTGGTGAAATTGCTTCTGAAGTGATCCAGATTGCATATTGAATCACATTCTGCATCCCAGTCTTTGGTTCTTTTTCCTCTTCCTATGCATCTGAGTTTTAAGTTTTCATGTTGTTATATG
CAACAGAGCTGTCATTCACATCGTTCATATTCAAAAAAAATCACGAGGAATTCATTGAAGACAAGCAAACTTTGATGTGATGTGAGTGTGGTTTCATTGGAGATGGTCAACTATGATAGGGTGTTTTCTTTGTTTTACAAGTGTCAATTATCGGGAAACTGTACAAAGCTTTTATACAAAGTTGGTTTGTTTTTCTGTAA
AATTCGACTGGATACAGTTAACTATTTGGAGATTGTGGCAGCTGAGACTCCGCTGGAAGATCTCTTCTTTTTCCTCCCCTCATTTTTATGTTCATGCATCTGCATTAATTTTTAATTTTATTATTGTTGTCTGGCTATTTAGCTCTTTTGATGTAGTGATAGGAATTGCTTTTGCACTCCCACTTTATATTTGCACTAGT
GTTTTTGAACATTTTGATAAAGTGATATGAATTGCTTTTGCACTCCCAC
>TRINITY_DN39968_c0_g1_i3 from sample A6 / Example unspliced isoform:CAGGTTGGGGAGCAGTCCACCGGTATCGTATTTCTTCATCATAGCTTGGAACGGAGGGAAGGAGCATCTTTTCATAGTATGTGAACTGCTGAGAGCTAATTTATATGAGTTCCAAAAATTCAATAAAGAATCAGGTGGGGAGGTTTATTTCACTATGCCTCGTTTACAGTCTATAACTCGTCAATGCTTGGAGGCTTTGG
ATTTCTTACATGGTTTAGGACTTATTCACTGTGATCTGAAGCCTGAAAACATTCTTGTAAAAAGTTACAGTCGGTGTGAAATAAAAGTTATAGATCTTGGGAGCAGTTGTTTTCAAACAGATCACTTATGTTCATATGTACAGTCACGCTCCTATCGTGCACCAGAAGTCATTCTGGGCCTGCCATATGATAAAAAAATT
GACATCTGGTCCCTCGGCTGTATCTTGGCAGAACTTTGCTCTGGAAATGTCCTTTTTCAAAATGATTCCTTGGCAACATTGCTTGCACGTATAATAGGTATACTTGGTCCAATAGATCCAGAGATGCTTGCTAAAGGACAGGATACACACAAATATTTCACTAAGAACCATGTGTTGTATGAGCGGATTGAGGAAACTGA
GCAATTGGAATATATTCTTCCCAAAAAAACATCACTAAGTCATCGTCTTCCCTCAGCAGACCCTGGTTTTGTTGAGTTTGTTGGATACCTGCTCCAGATTAATCCACTGTATCGTCCAACTGCCAAAGAAGCAAAGGAGCATCCGTGGCTTTCCTACCCTTACGAGCCGATTTCTGGTTGACATGTTTATTTGGAAGTTA
GCTTCTGACTTGTTTGGAGCCAGTGGTGAAATTGCTTCTGAAGTGATCCAGATTGCATATTGAATCACATTCTGCATCCCAGTCTTTGGTTCTTTTTCCTCTTCCTATGCATCTGAGTTTTAAGTTTTCATGTTGTTATATGCAACAGAGCTGTCATTCACATCGTTCATATTCAAgtacgtatcatgaagattatattt
gttaatttacaaatagactcctttgtagatatattcttttagatatgccgtatctgtttataccaaaagcagggtaatgtaaattgtaggattcttcatggtgcccaattattgtgagcggtctccgattgctactgtaaaatttgtgaactgtagtctatattttgtcaaattaatttgttaaacccagaaaaatcaat
tttcccatcatagcatggagatgtgaaggtggctttactgtgcagAAAAAATCACGAGGAATTCATTGAAGACAAGCAAACTTTGATGTGATGTGAGTGTGGTTTCATTGGAGATGGTCAACTATGATAGGGTGTTTTCTTTGTTTTACAAGTGTCAATTATCGGGAAACTGTACAAAGCTTTTATACAAAGTTGGTTTG
TTTTTCTGTAAAATTCGACTGGATACAGTTAACTATTTGGAGATTGTGGCAGCTGAGACTCCGCTGGAAGATCTCTTCTTTTTCCTCCCCTCATTTTTATGTTCATGCATCTGCATTAATTTTTAATTTTATTATTGTTGTCTGGCTATTTAGCTCTTTTGATGTAGTGATAGGAATTGCTTTTGCACTCCCACTTTATA
TTTGCACTAGTGTTTTTGAACATTTTGATAAAGTGATATGAATTGCTTTTGCACTCCCAC
Intron 2 GTAAGTGGGT ... CCAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.42 | 6 | 2 | 13 |
| A2 | 72.22 | 5 | 3 | 13 |
| A3 | 100 | 0 | 1 | 6 |
| A4 | 88.89 | 1 | 1 | 8 |
| A5 | 77.78 | 2 | 0 | 7 |
| A6 | 100 | 0 | 1 | 1 |
| A7 | 78.57 | 3 | 0 | 11 |
| A8 | 75 | 1 | 2 | 3 |
| A9 | 83.33 | 3 | 1 | 15 |
| A10 | 70.59 | 5 | 2 | 12 |
>TRINITY_DN116241_c0_g1_i7 from sample A1 / Example spliced isoformTGCTATTTGAAAAGTGCATTATAATCTGGTTTAGTGTGGAATGGAATAAAGTCAAGTCACACAACCGCTGTTTCCTCACTAACCGTCCTGCCATGAGCTGCTACGACTGAATTCGAAAGACGACAATGGAGGCCACAGTAGAAGTGATCTTGGAGTTCCTGAAAAACAACAATTTCAGCAACACCGAGTCCGTATTGAGA
GCCGAACTGATGGCAATGAAGTCTTCGACACTTCCACCAGCTCTTGCTGCTGCTGTGGATGAACTTCCAAGGCTTCCGCCTGTAAGGCTTCAATTGGGGAATTGCAACAATTTGAATGGAAATTCCGAGGATGGAAATTCTAGTAGGAGCTTCGATTCAGCCACATTTCTAAGCGTGACTGATACCCCCGAAGGCTTTTT
TGGGTTGGGCTCTTTCATGGGTCAGGACACTTCTTCTTCAGGAATGAAAATTTCGTGCGGAAGGCTATCGGCAAGTCGGGGGATGTCAGAAGATTTATCCGACCGACTTTCCGGATTCGCAACCGCCGCCGATGGTGATTGCTTTAGTGAATCTCCTATTGATTTCCCCTGCCCAAATTGGGTTGATTACCCTTGCCAAA
ATTGGGAATCCGATACATATGAAGATGATGATGATCCTGGGTACCATAGACAACAAATTGAAGATAAAGCGTGGTTTTTGGCTCACGAAATTGATCATCCTAGTGGCGATGAAGAGGTGAAGTTGGAGAATGATTGTAGTCCGGATGAGGATCCTGGAAAATGGGGTGGAGATATCAAATCTGTTACGGAAGAAGAACCT
TGGGAACCAAGGTTGAGGAATATGCTCAAGGAAAGAGTACAACCCAATGTGGATGGTGTGATTGTCCTCCATGAAAATAATGATGTAAAAGTCTATGAAGGAGATTTTGTAGACTTGTTAAAGATGAGAAATCCTTGGCATTGTGTAAACAAAGATACACAGGTGAAAGATAGTGATAAGGATGATTGCGGCAAAGGGCA
TTACCATTGCTCAACAGAACGTGGTGCTACATTTCCTGAAATGGCAAGATTAGATAGCATATTGATAAACAATGATTTATTAGTTTCAGAAATTGAGTGCATGGCAGAGGAAAACAGCGGAGGAGATATGGAAAAATCAAGAAAGGGAGGGTCAGGGGTTGAGGAATCCATGCATGTTTCATATTGGGAAAGTTCCAGTT
TTCAGGAGTGTTTGGTTCCGTCTAGAATTGATCATCTTGAGTCAGAGTATGCAGCAATGAGGCCTCTTGAAGATGATTATGTCGAGCAATATGGATTTCGTGCATACTACAATGAGTCATCAGGGCAGAATTTAGACTTGCAATTACCAGACAAAGATTTACAGGAACAGTGCTCCACGTTGGTTGGTTTGCATTCAACT
GATCGGAAATGCCTGAGTGTTGAATCTTCCTTCAGCAGCAGTGTGAAGAGTAAAGAAATTCTCAGCTTGGGTCTTTATGAACATTCAGATTTGTCTTCTCAGACCACTAATGACGATCTTTGCATGGAAGCAAGAGGGGAGGGTAAAGAAGAACATGATATATGCGAAGAAAGAGTCTGTGAAGATTCTATAGCAGCAGA
GGATGAAGATATGGAAGCTGTGCAGGACCAGATTCAGAGAATAGTTAGTGATGAAGATGAATACGAGGAATTTGATCTAAAGATTATACACAGGAAAAACAGAACTGGGTTCGAAGAGGAAAAAGATATATTTGTTGAGATAAATTCTGTGATAGCTGGGCGATATCATGTTAGTGAATACCTGGGGTCAGCTGCATTCA
GTAAAGCTATTCAGGCACATGATCTGCATACGGGAATGGACGTTTGTATGAAAATAATTAAAAACAACAAAGATTTTTTTGATCAGAGCCTGGATGAGATCAAACTTCTTAAGTATGTAAATAAGCATGATCCTGCAGACAGATATCACATCTTGCGTCTTTATGATTATTTCTATCATCGGGAGCATCTTTTCATAGTA
TGTGAACTGCTGAGAGCTAATTTATATGAGTTCCAAAAATTCAATAAAGAATCAGGTGGGGAGGTTTATTTCACTATGCCTCGTTTACAGTCTATAACTCGTCAATGCTTGGAGGCTTTGGATTTCTTACATGGTTTAGGACTTATTCACTGTGATCTGAAGCCTGAAAACATTCTTGTAAAAAGTTACAGTCGGTGTGA
AATAAAAGTTATAGATCTTGGGAGCAGTTGTTTTCAAACAGATCACTTATGTTCATATGTACAGTCACGCTCCTATCGTGCACCAGAAGTCATTCTGGGCCTGCCATATGATAAAAAAATTGACATCTGGTCCCTCGGCTGTATCTTGGCAGAACTTTGCTCTGGAAATGTCCTTTTTCAAAATGATTCCTTGGCAACAT
TGCTTGCACGTATAATAGGTATACTTGGTCCAATAGATCCAGAGATGCTTGCTAAAGGACAGGATACACACAAATATTTCACTAAGAACCATGTGTTGTATGAGCGGATTGAGGAAACTGAGCAATTGGAATATATTCTTCCCAAAAAAACATCACTAAGTCATCGTCTTCCCTCAGCAGACCCTGGTTTTGTTGAGTTT
GTTGGATACCTGCTCCAGATTAATCCACTGTATCGTCCAACTGCCAAAGAAGCAAAGGAGCATCCGTGGCTTTCCTACCCTTACGAGCCGATTTCTGGTTGACATGTTTATTTGGAAGTTAGCTTCTGACTTGTTTGGAGCCAGTGGTGAAATTGCTTCTGAAGTGATCCAGATTGCATATTGAATCACATTCTGCATCC
CAGTCTTTGGTTCTTTTTCCTCTTCCTATGCATCTGAGTTTTAAGTTTTCATGTTGTTATATGCAACAGAGCTGTCATTCACATCGTTCATATTCAAGTACGTATCATGAAGATTATATTTGTTAATTTACAAATAGACTCCTTTGTAGATATATTCTTTTAGATATGCCGTATCTGTTTATACCAAAAGCAGGGTAATG
TAAATTGTAGGATTCTTCATGGTGCCCAATTATTGTGAGCGGTCTCCGATTGCTACTGTAAAATTTGTGAACTGTAGTCTATATTTTGTCAAATCAATTTGTTAAACCCAGAAAAATCAATTTTCCCATCACAGCATGGAGATGTGAAGGTGGCTTTACTGTGCAGAAAAAATCACGAGGAATTCATTGAAGACAAGCAA
ACTTTGATGTGATGTGAGTGTGGTTTCATTGGAGATGGTCAACTATGATAGGGTGTTTTCTTTGTTTTACAAGTGTCAATTATCGGGAAACTGTACAAAGCTTTTATACAAAGTTGGTTTGTTTTTCTGTAAAATTCGACTGGATACAGTTAACTATTTGGAGATTGTGGCAGCTGAGACTCCGCTGGAAGATCTCTTCT
TTTTCCTCCCCTCATTTTTATGTTCATGCATCTGCATTAATTTTTAATTTTATTATTGTTGTCTGGCTATTTAGCTCTTTTGATGTAGTGATAGGAATTGCTTTTGCAC
>TRINITY_DN116241_c0_g1_i8 from sample A1 / Example unspliced isoform:TGCTATTTGAAAAGTGCATTATAATCTGGTTTAGTGTGGAATGGAATAAAGTCAAGTCACAgtaagtgggtgatcaccgagggaatacgttccgaaagaaaatgatttatcgtagttctacgcttttgctttttagctttttcctttacttcgtttttttcccaatttcagCAACCGCTGTTTCCTCACTAACCGTCCTG
CCATGAGCTGCTACGACTGAATTCGAAAGACGACAATGGAGGCCACAGTAGAAGTGATCTTGGAGTTCCTGAAAAACAACAATTTCAGCAACACCGAGTCCGTATTGAGAGCCGAACTGATGGCAATGAAGTCTTCGACACTTCCACCAGCTCTTGCTGCTGCTGTGGATGAACTTCCAAGGCTTCCGCCTGTAAGGCTT
CAATTGGGGAATTGCAACAATTTGAATGGAAATTCCGAGGATGGAAATTCTAGTAGGAGCTTCGATTCAGCCACATTTCTAAGCGTGACTGATACCCCCGAAGGCTTTTTTGGGTTGGGCTCTTTCATGGGTCAGGACACTTCTTCTTCAGGTATGAAAGATCATAATCTTTGACACTGG