sp|B1Q3J6|DNM1B_ORYSJ ----> DNA (cytosine-5)-methyltransferase 1B
Intron 1 GTAATCGTTT ... CAAAAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.04 | 96 | 144 | 91 |
| A2 | 53.49 | 110 | 194 | 59 |
| A3 | 57.23 | 71 | 110 | 80 |
| A4 | 53.37 | 83 | 135 | 55 |
| A5 | 55.65 | 53 | 112 | 21 |
| A6 | 60 | 13 | 15 | 24 |
| A7 | 50.99 | 62 | 26 | 103 |
| A8 | 58.26 | 24 | 7 | 60 |
| A9 | 51.45 | 42 | 6 | 83 |
| A10 | 48.63 | 75 | 29 | 113 |
>TRINITY_DN46656_c0_g1_i1 from sample A7 / Example spliced isoformGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATT
GGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGG
GAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGG
>TRINITY_DN46656_c0_g1_i2 from sample A7 / Example unspliced isoform:GTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATT
GGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTgtaatcgtttaaaccgaattgttttctacggctcattcttgaagtattttggaccattccccatttattcttatgccttcttggtcaatttggaacaatttagggttattgggaacgatgcagaggtgc
gtctgcagtgagaaatgttggtcgacttccagtcaagattacaaagtcaagctggtcaatttcgactaagcttcggcggaatttggtgtcaaaaactggatatctgtttctggtggattattgtgaattctagtgcaaaaacaacaatttcttttggtttttgctgtatgtcgtgtggcaatgtcatggcatgctttaaa
aaatgagagttccgatagaaattcactttcagagcgacgatttttgggccatctggatcgttctggcttagtttatgtaaaatttaccatttttctgaatcccgatcatcttttatgtgcagataagaggagtttgtgagtatttgggattcaagcagctatacgttttgcagtttttttgaataaaatcactgcatatt
agcatgaaaatggccatatcaccgtcgttttagttgcctgcaagatttgtggtgccggctggttattttgtttccttgcttaatatcttggtcaagatttttgctttcgttggttgctaaatttggagggtcagttgtctttctccgctaaatatagaggacttcttacgaggccgaataaaactctggaatgattttct
agcttgagtcgaacttttaaacatggcgagctgctatataacgtcttgatccgatttgttaaaacgccgaggcgtttgggcattcatgccccgtcaaagctaaaggctctccactttggctttgttgcggccggtattggcggaaattttggagacgtaagggatttttttggggaaaaaatcaccgcaaaccttagtcc
agccccgctctttgcgcaatgaaattatcggtttaattgccaaggtacacggagtgtataaaatgcggatttcagttgaagacacaccttcaaagactttttgttaatggcggcggctggggcatccggcctgattcagcgggagcaacaagaaggcattgtgctccaaatgatcgcgaccgatgctcgaattcggcggc
cttacatttcttccacaggtattgacgaattcctttattcacgtcatctctcttatccacagactctgcattagtttgccatcaaaataaaagaacataacaaatgcctcttggatacttgattgctatgatacctgcgttcgtcgtctccgccattatgatattcaagcccttgctcgtccgtgcacacaggcgataag
ttccgtagccgaaaagagtgcgtagatacttggcatcggccaggaactgtaatagttctcaagaaatggggaataataagccgaaaaaacaaacaagacctaaacaggttaaagaagtggatgttcaaggcaccgatgagcggaatcaaatcagaaaacagcccaagcgcacggctacgagaatggattacaaggaaaaa
aagcttcgtctcgacaaagaacagtcaattattgaagccaagaagtatcgaacaacagaccaggaggacgtcgctatcttacttacagtggatgcgcaagaatcggacgaaagtcctccgcaaaggcgtttaacggatttcactgtccatgacgatcagggtaaatctcagggcatcgaaatggtaaacgtaattaacct
gtacatttctggttatatttttccaaagaatagttcgttggacaaatcagaaggggtccgctgcgagggttttgggcgtgtagagacatggtctataaccggttatgaggatgggtttcctattgtctggctcacaacggatgcagcagagtatatctgcgtccagccttcgggttcatacaacaaattcttcaccattt
tgcacgagaaggcaatgctatgtgtcgaggtttatcgtgccctatcaaaggctgatggtggcaatcctgagctagggttgaatgaattagtggctcgggtgaaccggtccatttccaagaactatcagggaatgtctatggggcgagatttcattgtgtctcagggttcttttattgcgaatcagctagaagctctggat
gatgattcatcagagaatgaacagcacttcacgggtctgccttctctcatagctctggagaacgagtgcgtaaagttctcaaagagggaatcggaaggggtaaaaattggggagtcttcgactgcatcttcttcctctgccccggttgctgacaaggatgaaaaactggcgagatcgattcacgaggagaaagactggaa
ggctgcaaaaccaagtcgcaagtctcaggagaagaagttttacatcaagatcaatgaggatgaaattgtcaatgattatcctttaccagcattttataaggcagatgaagatgaaatggatgaatatgtcctttttgatgactattcatctgcattaactcccgatagtcttccccacagaatgttacacgattggtcta
tctataactctgattccaggcttgtttcattagaacttcttcctatgcttggcagcaccgagacagatactgaaatatttggttcaggaatcatgactgaagatgatggcagtggatattgtcttgatgatggctctgcagagggtcacaagtatgaagaaaaacagccacaaggaattcgcatatacctgagtgcaatc
aaggaatggttgattgaattcagagctaatatgctctttatatcaattcgcactgatggggcttggtatagacttggtaaaccctcgaagcagtattccccttggtataagcctgtgctgaaaacagctagaattgcaatcaaagtaattgtaatgttgaaggagcagagccgtgtttccaagattttgttctcagatgt
gatcaggaaactggcagaccaagacaaaggtgaaccgacttttatctcatctaacttggcagatgtagagaggtatgttatagttcatggtcagataattttgcagcaatttgcagagtatccagatgaatgtatccaaaggagtgcctttgtgacagacctttcaaccaagatggaacaaaggcatcacacaaaactag
ctttgacaaagaagaaagtaatagtcaaggcaaaaaatctgaatccccgggccattgtgagacttgatactaccaagccgaaagcaatgcgtgcaactatgacaaagcttataaatcgcatctggagtgagtattattcatgctctgcattggaagaagccatggactttgctgataatggtgacaatgatgtagaggaa
caggaagaccaggaagacagtgaagatgacgaggatacaaatttggcttcagagattgcaacaaaaccatatcccccaatcagaaaagggaagggcagaccaaaccgaaaagatgcaagctgggtgggaaattgtatgggtaaaacaaggtttggtgaacccctctacaagagtgcctctgttcatggagttattgttgc
tgtgggtggtgcagttttagtggatttagatgaacagaatttgccagttattctttttgtggaatacatgtgtgagaaatctcatggtacaaaaatccttcatggaagggtgcttcagagaggaagccaaactgtgctaggaaatgcagctaattcaagagaagtttttttgactagtcaatgcctacatattgatctga
atgatgtaaaagagaccgtagaagtggatatcaggttacgaccttggggtcatcaatatcggaaggaaaacttttccgcagatgaagctgataggttacgagctgtggagcgtgagcggaagaggctgcctgtggaatacttctgcaaatatctgtattcccctgagaggggtgcttttctttctcttccttatgacact
ctaggccttggtaatggccaatgtctttcttgcagactcagagaacacgaaaaacagagtcataaactctacatgcttaaaaataaggatgggtttaggtatgaaggtgtggagtactatctttctgattttatttatgtggacccagagcaatttcctccacttggagaagaaaaggaaccaatagaaagattcaaagc
aagtaggaatagagggcttagagcctacattgtttgccagattttagagattagaagttcaagtagcttaaataaaggtgaattaaagcccacagaaataatagctaggagattctaccggccagaggacatcgggactgaaaaggcttatactgctgacatcagagaggtctattatagtgatgaaactgctactatag
aagtgagtgcaataaagggaaaatgtgaagttagaagacatcagtatttatctctagtacctggcaatgctatttttgatcacattttcttttgcagctgcatctacaatccaaagaagggcacattcatgcagttgcctgcaaatgtcaagttaagctcttcaaaaagcatggtaggcaagaagaacaagcgtcttgta
catgaaactgcaagtgctaagcgaaagggaaacaccatttcagttgaacaatctgcagaagagatgttagaagcctctcatgattgtcgtttgtcaacactagatatttttgctggctgtggtggtttgtcaaaggggttgcaaaaatcagGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGA
ATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGAC
CGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATG
GGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATT
GGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAAC
GAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGC
AAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATT
AATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAG
CCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGCC
Intron 2 GTTTTGCAAT ... GGGGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.41 | 78 | 41 | 177 |
| A2 | 63.64 | 44 | 21 | 77 |
| A3 | 67.66 | 65 | 21 | 136 |
| A4 | 64.23 | 44 | 23 | 79 |
| A5 | 61.45 | 32 | 9 | 51 |
| A6 | 72.73 | 30 | 3 | 80 |
| A7 | 63.57 | 106 | 48 | 185 |
| A8 | 65.93 | 77 | 30 | 149 |
| A9 | 64.85 | 71 | 44 | 131 |
| A10 | 70.78 | 45 | 26 | 109 |
>TRINITY_DN46727_c2_g2_i2 from sample A10 / Example spliced isoformCTTATACTGCTGACATCAGAGAGCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGC
CTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGG
AAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTT
ATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGA
TCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAA
TAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGT
TTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTC
AGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAAT
CCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCA
>TRINITY_DN46727_c2_g2_i8 from sample A10 / Example unspliced isoform:GGGCTGATGGTGGCAATCCTGAGCTAGGGTTGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTC
ATAGCTCTGGAGAACGAGTGCGTAAAGTTCTCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAA
GATCAATGAGGATGAAATTGTCAATGATTATCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGC
TTGGCAGCACCGAGACAGATACTGAAATATTTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATT
CGCACTGATGGGGCTTGGTATAGACTTGGTAAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTC
ATCTAACTTGGCAGATGTAGAGAGGTATGTTATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCC
GGGCCATTGTGAGACTTGATACTACCAAGCCGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCT
TCAGAGATTGCAACAAAACCATATCCCCCAATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGT
TATTCTTTTTGTGGAATACATGTGTGAGAAATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGG
GTCATCAATATCGGAAGGAAAACTTTTCCGCAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACAC
GAAAAACAGAGTCATAAACTCTACATGCTTAAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGA
GATTAGAAGTTCAAGTAGCTTAAATAAAGGTGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGGTCTATTATAGTGATGAAACTGCTACTATAGAAGTGAGTGCAATAAAGGGAAAATGTGAAGTTAGAAGACATCAGTATT
TATCTCTAGTACCTGGCAATGCTATTTTTGATCACATTTTCTTTTGCAGCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAA
CAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTG
CAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGgttttgcaatttattctgtggcatcaagttgctataa
atgtgaaaatgtttcagattccgtcttgtggagtttacacaagctgttgaaaggctttgaaaagtccaaaagaaatcctggtttttctggaatgaatagatttaaccaaagaacttggagtgaagtgcaatgggagattgtattgacattcctctcatatgctgattattttcggccaagattcattttattggagaatg
tcagaaattttgtatccttcaacaaaggtcagacattttgtcttatgctggcgtcactcttggaaatggggtatcagGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTT
TCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGA
TACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAG
GTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAAT
GCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGAT
ATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATT
TGCA
Intron 3 GTCTATTATA ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.87 | 57.8 | 119 | 84.3 |
| A2 | 61.74 | 36.4 | 48 | 68.8 |
| A3 | 58.96 | 42.9 | 49 | 69.2 |
| A4 | 77.09 | 18.4 | 59 | 63.4 |
| A5 | 64.22 | 16.9 | 26 | 32 |
| A6 | 46.66 | 12 | 6 | 15 |
| A7 | 67.02 | 41.7 | 86 | 75.6 |
| A8 | 60.63 | 22.2 | 36 | 29.6 |
| A9 | 63.95 | 32 | 59 | 50 |
| A10 | 72.4 | 29.6 | 88 | 59.9 |
>TRINITY_DN114977_c0_g1_i12 from sample A1 / Example spliced isoformTTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATA
AGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATC
TTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCG
TGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGT
TGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTC
TCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTA
TCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATAT
TTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGT
AAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGT
TATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGC
CGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCA
ATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAA
ATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCG
CAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTT
AAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGG
TGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAA
ACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTT
CAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTT
GTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTAT
CAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGC
ACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCC
CTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTA
GGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAG
CTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATAT
TCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGC
>TRINITY_DN114977_c0_g1_i11 from sample A1 / Example unspliced isoform:TTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATA
AGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATC
TTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCG
TGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGT
TGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTC
TCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTA
TCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATAT
TTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGT
AAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGT
TATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGC
CGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCA
ATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAA
ATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCG
CAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTT
AAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGG
TGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGgtctattatagtgatgaaactgctactatagaagtgagtgcaataaagggaaaatgtgaagttagaagacatcagtatttatctctagtacctggcaatgctatttttg
atcacattttcttttgcagCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCT
CATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAA
GGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGA
CATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGG
GCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTT
GGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTG
ATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCA
GACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAG
ACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCC
ATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGC
Intron 4 GTATTGACGA ... GATATTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.02 | 34.6 | 39.6 | 45 |
| A2 | 60.24 | 17.8 | 32.8 | 21 |
| A3 | 42.16 | 54 | 41.4 | 37 |
| A4 | 57.93 | 33.4 | 44.5 | 47 |
| A5 | 53.97 | 27.6 | 36.5 | 28 |
| A6 | 100 | 0 | 2 | 0 |
| A7 | 47.15 | 17.9 | 11.9 | 20 |
| A8 | 55.56 | 2 | 2 | 3 |
| A9 | 57.27 | 3 | 5.9 | 2 |
| A10 | 77.92 | 5 | 18 | 17 |
>TRINITY_DN114977_c0_g1_i12 from sample A1 / Example spliced isoformTTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATA
AGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATC
TTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCG
TGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGT
TGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTC
TCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTA
TCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATAT
TTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGT
AAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGT
TATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGC
CGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCA
ATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAA
ATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCG
CAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTT
AAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGG
TGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAA
ACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTT
CAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTT
GTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTAT
CAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGC
ACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCC
CTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTA
GGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAG
CTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATAT
TCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGC
>TRINITY_DN114977_c0_g1_i10 from sample A1 / Example unspliced isoform:TTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGgtattgacgaattcctttattcacgtcatctctcttatccacagactctgcattagtttgccatcaaaataaaagaacataacaaatgcctcttggatacttgattgct
atgatacctgcgttcgtcgtctccgccattatgatattcaagCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATAAGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCA
AGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATCTTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGC
GTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCGTGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTC
TGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGTTGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCA
GGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTCTCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCAT
CTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTATCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATAT
GTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATATTTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGA
TGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGTAAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAG
CTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGTTATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGAT
GAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGCCGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAG
TGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCAATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGG
GAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAAATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGC
CAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCGCAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCT
GCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTTAAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTG
ATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGGTGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAG
GACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGGTCTATTATAGTGATGAAACTGCTACTATAGAAGTGAGTGCAATAAAGGGAAAATGTGAAGTTAGAAGACATCAGTATTTATCTCTAGTACCTGGCAATGCTATTTTTGATCACATTTTCTTTTGCAGCTGCATCTACAATCCAAAGAAGGGCACATT
CATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTT
TGTCAAAGGGGTTGCAAAAATCAGGTGCCTCTGGGTTCTCTTTGTATGCATTTTTTTCCTTGTTTAATGTCTTTCTTAGTTTTCTCCTCCATATTCCATGGTCTAACATGCATGCTCACTATCTCTCATTTGCATCTATTTTTGACTTTACTTTGATCTTTGATTTCTCATCCACCTTTGGGAAGATAGACATTTAATAT
CTTTTTTTTTAAAGTTACATAACCTCTTCCAACTAACATTGTAAGTTAGATGACACTGTAATTATGAAATGAATCTGGGTAGAGATTATCTGTTGCTCATGAGCTCGATTATAGGCTTTACTCCACAAAAAATTTAGTGTTTATGATTTTAGTGGTACGGGTCATGTCTTGGGAGCCAAGAGGAAGGTTCACATTGCTAC
TTCAATGATTCAATGTAGACGAGCAAGGTGTTAGAAGTTGTACAACGACATTGCACTAAAACTATAAGTTTTCAATTGTCCATAAGAGTCTACTTTCAAAACCAACTTCTCATAAGCCTCATGTAGAAGTCGAAGGAAGTTGAATTCCTCATCAACAGAGCTTGGAGTGCATGATTCAAGTGATAGCTTGAGTTTGAAGT
AAATGCGAGTGGGGAGGTGGCCTTCACCTTGGCAAGGCGCCCCCACTCTTCCATAGGAAGTATCACCAA
Intron 5 GTGAGTGCAA ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.4 | 42.4 | 54 | 88 |
| A2 | 61.49 | 34.8 | 39.3 | 72 |
| A3 | 65.34 | 32.5 | 49.4 | 72 |
| A4 | 66.2 | 28.4 | 44.7 | 66 |
| A5 | 70.83 | 12.5 | 27.7 | 33 |
| A6 | 53.2 | 9 | 4.5 | 16 |
| A7 | 65.94 | 31.8 | 44.8 | 79 |
| A8 | 59.28 | 17.4 | 18.8 | 32.5 |
| A9 | 68.26 | 18.8 | 28.8 | 53 |
| A10 | 68.8 | 22.7 | 39.8 | 62 |
>TRINITY_DN111803_c1_g1_i3 from sample A2 / Example spliced isoformTGAACTTCTAATCTCTAAAATCTGGCAAACAATGTAGGCTCTAAGCCCTCTATTCCTACTTGCTTTGAATCTTTCTATTGGTTCCTTTTCTTCTCCAAGTGGAGGAAATTGCTCTGGGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGG
TCTATTATAGTGATGAAACTGCTACTATAGAACTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGAT
GTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGT
CAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGTAATACAACTTAGGAAACAGCTAGAAACTGGCAATATAGATGGTTGGCTATGC
TGACTGTCTATTTTTGTTTTAGTATCTATCCATGGATTGAAGTTCCAGATGCAACCTTATATTTTAATGTTCTCCAGGTTTTGCAATTTATTCTGTGGCATCAAGTTGCTATAAATGT
>TRINITY_DN111803_c1_g1_i7 from sample A2 / Example unspliced isoform:GCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCCGAG
TTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTCAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCATTC
CCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAATTC
TAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAGAGG
AGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGAGGG
TCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTGCGG
CCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCCGGC
CTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATAAGC
CGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATCTTA
CTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCGTGT
AGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGTTGA
ATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTCTCA
AAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTATCC
TTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATATTTG
GTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGTAAA
CCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGTTAT
AGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGCCGA
AAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCAATC
AGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAAATC
TCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCGCAG
ATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTTAAA
AATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGGTGA
ATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGGTCTATTATAGTGATGAAACTGCTACTATAGAAgtgagtgcaataaagggaaaatgtgaagttagaagacatcagtatttatctctagtacctggcaatgctatttttgatc
acattttcttttgcagCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCAT
GATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGG
AGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGTAATACAACTTAGGAAACAGCTAGAAACTGGCAATATAGATGGTTGGCTATGCTGACTGTCTATTTTTG
TTTTAGTATCTATCCATGGATTGAAGTTCCAGATGCAACCTTATATTTTAATGTTCTCCAGGTTTTGCAATTTATTCTGTGGCATCAAGTTGCTATAAATGT
Intron 6 GTACATATAA ... GTCTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.86 | 119 | 56 | 27 |
| A2 | 26.15 | 48 | 14 | 20 |
| A3 | 26.32 | 49 | 27 | 8 |
| A4 | 21.33 | 59 | 14 | 18 |
| A5 | 26.76 | 26 | 13 | 6 |
| A6 | 29.41 | 6 | 4 | 1 |
| A7 | 22.52 | 86 | 33 | 17 |
| A8 | 20.88 | 36 | 16 | 3 |
| A9 | 22.37 | 59 | 22 | 12 |
| A10 | 20 | 88 | 25 | 19 |
>TRINITY_DN114977_c0_g1_i5 from sample A1 / Example spliced isoformTTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGGTATTGACGAATTCCTTTATTCACGTCATCTCTCTTATCCACAGACTCTGCATTAGTTTGCCATCAAAATAAAAGAACATAACAAATGCCTCTTGGATACTTGATTGCT
ATGATACCTGCGTTCGTCGTCTCCGCCATTATGATATTCAAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATAAGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCA
AGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATCTTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGC
GTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCGTGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTC
TGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGTTGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCA
GGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTCTCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCAT
CTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTATCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATAT
GTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATATTTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGA
TGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGTAAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAG
CTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGTTATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGAT
GAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGCCGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAG
TGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCAATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGG
GAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAAATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGC
CAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCGCAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCT
GCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTTAAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTG
ATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGGTGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAG
GACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGGTCTATTATAGTGATGAAACTGCTACTATAGAAGTGAGTGCAATAAAGGGAAAATGTGAAGTTAGAAGACATCAGTATTTATCTCTAGTACCTGGCAATGCTATTTTTGATCACATTTTCTTTTGCAGCTGCATCTACAATCCAAAGAAGGGCACATT
CATGCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGA
TGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTG
TATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAG
CTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGT
CCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAA
GATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCA
CCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAAT
ATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTA
AAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGC
>TRINITY_DN114977_c0_g1_i8 from sample A1 / Example unspliced isoform:TTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATA
AGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATC
TTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCG
TGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGT
TGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTC
TCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTA
TCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATAT
TTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGT
AAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGT
TATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGC
CGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCA
ATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAA
ATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCG
CAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTT
AAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGG
TGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGgtacatataaacttaattttgtaatgcattatgccccttttttctatccaaatattactgtctcctctataaggacatacttttagtcagtcctgcatagtagcataag
ctaaggactagataaatcctattttgcatttttgtgattataaatctgaaggtcatttacggaatgacagtctcatgtattatgaactttctctttgtttgacacctgtactgtcttttaacggttgctttcaactgtcagatttcttgactttggaaaaccttgctttatgtatttgcaattttgtcctatgctatatc
agcaactttgcactgaatgctattaagttgattttctgaattttaaactttagctccatttaaaagtccaaattgtatgaattttccacttcttagagtatctggccatctgcctaaatttgtttgtgttttaggttgatctcagtaaattccttagtttaaataaaagtgctatacatgtttgcacaaagtggtgttta
tatataggggatggaaaaacaacacgggaccagtaataatagctattgctcttgtcttgacagGTCTATTATAGTGATGAAACTGCTACTATAGAAGTGAGTGCAATAAAGGGAAAATGTGAAGTTAGAAGACATCAGTATTTATCTCTAGTACCTGGCAATGCTATTTTTGATCACATTTTCTTTTGCAGCTGCATCTA
CAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATA
TTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCG
ACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCG
GCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAG
AATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTC
TCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACAC
TGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATAC
AAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAG
AATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCG
TAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGC
Intron 7 GTACATATAA ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.06 | 69 | 56 | 88 |
| A2 | 51.81 | 40 | 14 | 72 |
| A3 | 49.75 | 50 | 27 | 72 |
| A4 | 65.57 | 21 | 14 | 66 |
| A5 | 53.49 | 20 | 13 | 33 |
| A6 | 43.48 | 13 | 4 | 16 |
| A7 | 52.83 | 50 | 33 | 79 |
| A8 | 47.47 | 26 | 16 | 31 |
| A9 | 49.67 | 38 | 22 | 53 |
| A10 | 54.72 | 36 | 25 | 62 |
>TRINITY_DN114977_c0_g1_i12 from sample A1 / Example spliced isoformTTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATA
AGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATC
TTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCG
TGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGT
TGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTC
TCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTA
TCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATAT
TTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGT
AAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGT
TATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGC
CGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCA
ATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAA
ATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCG
CAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTT
AAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGG
TGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAA
ACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTT
CAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTT
GTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTAT
CAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGC
ACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCC
CTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTA
GGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAG
CTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATAT
TCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGC
>TRINITY_DN114977_c0_g1_i8 from sample A1 / Example unspliced isoform:TTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCC
GAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGTAATCGTTTAAACCGAATTGTTTTCTACGGCTCATTCTTGAAGTATTTTGGACCA
TTCCCCATTTATTCTTATGCCTTCTTGGTCAATTTGGAACAATTTAGGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAA
TTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAG
AGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGA
GGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTG
CGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCC
GGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATA
AGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATC
TTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCG
TGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGT
TGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTC
TCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTA
TCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATAT
TTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGT
AAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGT
TATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGC
CGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCA
ATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAA
ATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCG
CAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTT
AAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGG
TGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGgtacatataaacttaattttgtaatgcattatgccccttttttctatccaaatattactgtctcctctataaggacatacttttagtcagtcctgcatagtagcataag
ctaaggactagataaatcctattttgcatttttgtgattataaatctgaaggtcatttacggaatgacagtctcatgtattatgaactttctctttgtttgacacctgtactgtcttttaacggttgctttcaactgtcagatttcttgactttggaaaaccttgctttatgtatttgcaattttgtcctatgctatatc
agcaactttgcactgaatgctattaagttgattttctgaattttaaactttagctccatttaaaagtccaaattgtatgaattttccacttcttagagtatctggccatctgcctaaatttgtttgtgttttaggttgatctcagtaaattccttagtttaaataaaagtgctatacatgtttgcacaaagtggtgttta
tatataggggatggaaaaacaacacgggaccagtaataatagctattgctcttgtcttgacaggtctattatagtgatgaaactgctactatagaagtgagtgcaataaagggaaaatgtgaagttagaagacatcagtatttatctctagtacctggcaatgctatttttgatcacattttcttttgcagCTGCATCTA
CAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATA
TTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCG
ACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCG
GCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAG
AATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTC
TCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACAC
TGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATAC
AAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAG
AATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCG
TAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGC
Intron 8 GTAATCGTTT ... CAAAAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.04 | 96 | 144 | 91 |
| A2 | 53.49 | 110 | 194 | 59 |
| A3 | 57.23 | 71 | 110 | 80 |
| A4 | 53.37 | 83 | 135 | 55 |
| A5 | 55.65 | 53 | 112 | 21 |
| A6 | 60 | 13 | 15 | 24 |
| A7 | 50.99 | 62 | 26 | 103 |
| A8 | 58.26 | 24 | 7 | 60 |
| A9 | 51.45 | 42 | 6 | 83 |
| A10 | 48.63 | 75 | 29 | 113 |
>TRINITY_DN46656_c0_g1_i1 from sample A7 / Example spliced isoformGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATT
GGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGG
GAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGG
>TRINITY_DN46656_c0_g1_i4 from sample A7 / Example unspliced isoform:GTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATT
GGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTgtaatcgtttaaaccgaattgttttctacggctcattcttgaagtattttggaccattccccatttattcttatgccttcttggtcaatttggaacaatttagggttattgggaacgatgcagaggtgc
gtctgcagtgagaaatgttggtcgacttccagtcaagattacaaagtcaagctggtcaatttcgactaagcttcggcggaatttggtgtcaaaaactggatatctgtttctggtggattattgtgaattctagtgcaaaaacaacaatttcttttggtttttgctgtatgtcgtgtggcaatgtcatggcatgctttaaa
aaatgagagttccgatagaaattcactttcagagcgacgatttttgggccatctggatcgttctggcttagtttatgtaaaatttaccatttttctgaatcccgatcatcttttatgtgcagataagaggagtttgtgagtatttgggattcaagcagctatacgttttgcagtttttttgaataaaatcactgcatatt
agcatgaaaatggccatatcaccgtcgttttagttgcctgcaagatttgtggtgccggctggttattttgtttccttgcttaatatcttggtcaagatttttgctttcgttggttgctaaatttggagggtcagttgtctttctccgctaaatatagaggacttcttacgaggccgaataaaactctggaatgattttct
agcttgagtcgaacttttaaacatggcgagctgctatataacgtcttgatccgatttgttaaaacgccgaggcgtttgggcattcatgccccgtcaaagctaaaggctctccactttggctttgttgcggccggtattggcggaaattttggagacgtaagggatttttttggggaaaaaatcaccgcaaaccttagtcc
agccccgctctttgcgcaatgaaattatcggtttaattgccaaggtacacggagtgtataaaatgcggatttcagttgaagacacaccttcaaagactttttgttaatggcggcggctggggcatccggcctgattcagcgggagcaacaagaaggcattgtgctccaaatgatcgcgaccgatgctcgaattcggcggc
cttacatttcttccacagcccttgctcgtccgtgcacacaggcgataagttccgtagccgaaaagagtgcgtagatacttggcatcggccaggaactgtaatagttctcaagaaatggggaataataagccgaaaaaacaaacaagacctaaacaggttaaagaagtggatgttcaaggcaccgatgagcggaatcaaat
cagaaaacagcccaagcgcacggctacgagaatggattacaaggaaaaaaagcttcgtctcgacaaagaacagtcaattattgaagccaagaagtatcgaacaacagaccaggaggacgtcgctatcttacttacagtggatgcgcaagaatcggacgaaagtcctccgcaaaggcgtttaacggatttcactgtccatg
acgatcagggtaaatctcagggcatcgaaatggtaaacgtaattaacctgtacatttctggttatatttttccaaagaatagttcgttggacaaatcagaaggggtccgctgcgagggttttgggcgtgtagagacatggtctataaccggttatgaggatgggtttcctattgtctggctcacaacggatgcagcagag
tatatctgcgtccagccttcgggttcatacaacaaattcttcaccattttgcacgagaaggcaatgctatgtgtcgaggtttatcgtgccctatcaaaggctgatggtggcaatcctgagctagggttgaatgaattagtggctcgggtgaaccggtccatttccaagaactatcagggaatgtctatggggcgagattt
cattgtgtctcagggttcttttattgcgaatcagctagaagctctggatgatgattcatcagagaatgaacagcacttcacgggtctgccttctctcatagctctggagaacgagtgcgtaaagttctcaaagagggaatcggaaggggtaaaaattggggagtcttcgactgcatcttcttcctctgccccggttgctg
acaaggatgaaaaactggcgagatcgattcacgaggagaaagactggaaggctgcaaaaccaagtcgcaagtctcaggagaagaagttttacatcaagatcaatgaggatgaaattgtcaatgattatcctttaccagcattttataaggcagatgaagatgaaatggatgaatatgtcctttttgatgactattcatct
gcattaactcccgatagtcttccccacagaatgttacacgattggtctatctataactctgattccaggcttgtttcattagaacttcttcctatgcttggcagcaccgagacagatactgaaatatttggttcaggaatcatgactgaagatgatggcagtggatattgtcttgatgatggctctgcagagggtcacaa
gtatgaagaaaaacagccacaaggaattcgcatatacctgagtgcaatcaaggaatggttgattgaattcagagctaatatgctctttatatcaattcgcactgatggggcttggtatagacttggtaaaccctcgaagcagtattccccttggtataagcctgtgctgaaaacagctagaattgcaatcaaagtaattg
taatgttgaaggagcagagccgtgtttccaagattttgttctcagatgtgatcaggaaactggcagaccaagacaaaggtgaaccgacttttatctcatctaacttggcagatgtagagaggtatgttatagttcatggtcagataattttgcagcaatttgcagagtatccagatgaatgtatccaaaggagtgccttt
gtgacagacctttcaaccaagatggaacaaaggcatcacacaaaactagctttgacaaagaagaaagtaatagtcaaggcaaaaaatctgaatccccgggccattgtgagacttgatactaccaagccgaaagcaatgcgtgcaactatgacaaagcttataaatcgcatctggagtgagtattattcatgctctgcatt
ggaagaagccatggactttgctgataatggtgacaatgatgtagaggaacaggaagaccaggaagacagtgaagatgacgaggatacaaatttggcttcagagattgcaacaaaaccatatcccccaatcagaaaagggaagggcagaccaaaccgaaaagatgcaagctgggtgggaaattgtatgggtaaaacaaggt
ttggtgaacccctctacaagagtgcctctgttcatggagttattgttgctgtgggtggtgcagttttagtggatttagatgaacagaatttgccagttattctttttgtggaatacatgtgtgagaaatctcatggtacaaaaatccttcatggaagggtgcttcagagaggaagccaaactgtgctaggaaatgcagct
aattcaagagaagtttttttgactagtcaatgcctacatattgatctgaatgatgtaaaagagaccgtagaagtggatatcaggttacgaccttggggtcatcaatatcggaaggaaaacttttccgcagatgaagctgataggttacgagctgtggagcgtgagcggaagaggctgcctgtggaatacttctgcaaata
tctgtattcccctgagaggggtgcttttctttctcttccttatgacactctaggccttggtaatggccaatgtctttcttgcagactcagagaacacgaaaaacagagtcataaactctacatgcttaaaaataaggatgggtttaggtatgaaggtgtggagtactatctttctgattttatttatgtggacccagagc
aatttcctccacttggagaagaaaaggaaccaatagaaagattcaaagcaagtaggaatagagggcttagagcctacattgtttgccagattttagagattagaagttcaagtagcttaaataaaggtgaattaaagcccacagaaataatagctaggagattctaccggccagaggacatcgggactgaaaaggcttat
actgctgacatcagagaggtctattatagtgatgaaactgctactatagaagtgagtgcaataaagggaaaatgtgaagttagaagacatcagtatttatctctagtacctggcaatgctatttttgatcacattttcttttgcagctgcatctacaatccaaagaagggcacattcatgcagttgcctgcaaatgtcaa
gttaagctcttcaaaaagcatggtaggcaagaagaacaagcgtcttgtacatgaaactgcaagtgctaagcgaaagggaaacaccatttcagttgaacaatctgcagaagagatgttagaagcctctcatgattgtcgtttgtcaacactagatatttttgctggctgtggtggtttgtcaaaggggttgcaaaaatcag
GAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAA
AAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTT
CAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAA
TATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGT
GACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGA
TTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGG
CATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGG
ATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAA
AATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGCC
Intron 9 GTAATCGTTT ... AACAATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.1 | 82 | 144 | 93 |
| A2 | 59.48 | 94 | 194 | 82 |
| A3 | 60.26 | 60 | 110 | 72 |
| A4 | 54.44 | 82 | 135 | 61 |
| A5 | 56.93 | 59 | 112 | 44 |
| A6 | 71.43 | 4 | 15 | 5 |
| A7 | 50 | 17 | 26 | 8 |
| A8 | 66.67 | 3 | 7 | 5 |
| A9 | 57.89 | 4 | 6 | 5 |
| A10 | 61.9 | 12 | 29 | 10 |
>TRINITY_DN41782_c0_g6_i3 from sample A9 / Example spliced isoformCAACAATTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAAC
CGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCG
ACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTATTGTGAATTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCA
CTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAGATAAGAGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGT
CGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAATTTGGAGGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATG
GCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTTTGTTGCGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAAT
TATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGGCATCCGGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGCCCTTGC
TCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATAAGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGATGTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCT
ACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATCTTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCAAAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCAT
CGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCGTGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTATTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTT
CATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGTTGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAACTATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATT
GCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTCTCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGACTGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATC
GATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTATCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATGAATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCC
ACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATATTTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGTCTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGA
ATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGTAAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAAAACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGT
TTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGTTATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATCCAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGG
AACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGCCGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATCTGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGAT
AATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCAATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTGGGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGC
CTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAAATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAGGAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTA
GTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCGCAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAGAGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCT
TTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTTAAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCTTTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAA
GGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGGTGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGCCAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGGTCTATT
ATAGTGATGAAACTGCTACTATAGAAGTGAGTGCAATAAAGGGAAAATGTGAAGTTAGAAGACATCAGTATTTATCTCTAGTACCTGGCAATGCTATTTTTGATCACATTTTCTTTTGCAGCTGCATCTACAATCCAAAGAAGGGCACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTA
GGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGGTGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTAT
CGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGAC
AAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCTGATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTT
ATGCTGGCGTCACTCTTGGAAATGGGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTA
TGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATG
AATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCT
ATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAA
GGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTT
GTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAG
TCACAGTTCAGCTATATTTCTGACTCTAAACCTTTGTAATTAAACATCTATTCACTTTTTATTTGCTTCCCTCGTAAAATACTCATGAACATCAAATTTAAC
>TRINITY_DN41782_c0_g6_i4 from sample A9 / Example unspliced isoform:CAACAATTTGCCGAGGTGCCCTGCTAAGAATATTGGGGCAAGGAGGTGGCAAGTCCTAAAACGTCTATGACCCAAAAGCGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAAC
CGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATTGGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTgtaatcgtttaaaccgaattgttttctacggctcattcttgaagtatttt
ggaccattccccatttattcttatgccttcttggtcaatttggaacaatttagGGTTATTGGGAACGATGCAGAGGTGCGTCTGCAGTGAGAAATGTTGGTCGACTTCCAGTCAAGATTACAAAGTCAAGCTGGTCAATTTCGACTAAGCTTCGGCGGAATTTGGTGTCAAAAACTGGATATCTGTTTCTGGTGGATTAT
TGTGAATTCTAGTGCAAAAACAACAATTTCTTTTGGTTTTGCTGTATGTCGTGTGGCAATGTCATGGCATGCTTTAAAAAATGAGAGTTCCGATAGAAATTCACTTTCAGAGCGACGATTTTTGGGCCATCTGGATCGTTCTGGCTTAGTTTATGTAAAATTTACCATTTTTCTGAATCCCGATCATCTTTTATGTGCAG
ATAAGAGGAGTTTGTGAGTATTTGGGATTCAAGCAGCTATACGTTTTGCAGTTTTTTTGAATAAAATCACTGCATATTAGCATGAAAATGGCCATATCACCGTCGTTTTAGTTGCCTGCAAGATTTGTGGTGCCGGCTGGTTATTTTGTTTCCTTGCTTAATATCTTGGTCAAGATTTTTGCTTTCGTTGGTTGCTAAAT
TTGGAGGGTCAGTTGTCTTTCTCCGCTAAATATAGAGGACTTCTTACGAGGCCGAATAAAACTCTGGAATGATTTTCTAGCTTGAGTCGAACTTTTAAACATGGCGAGCTGCTATATAACGTCTTGATCCGATTTGTTAAAACGCCGAGGCGTTTGGGCATTCATGCCCCGTCAAAGCTAAAGGCTCTCCACTTTGGCTT
TGTTGCGGCCGGTATTGGCGGAAATTTTGGAGACGTAAGGGATTTTTTTGGGGAAAAAATCACCGCAAACCTTAGTCCAGCCCCGCTCTTTGCGCAATGAAATTATCGGTTTAATTGCCAAGGTACACGGAGTGTATAAAATGCGGATTTCAGTTGAAGACACACCTTCAAAGACTTTTTGTTAATGGCGGCGGCTGGGG
CATCCGGCCTGATTCAGCGGGAGCAACAAGAAGGCATTGTGCTCCAAATGATCGCGACCGATGCTCGAATTCGGCGGCCTTACATTTCTTCCACAGGTATTGACGAATTCCTTTATTCACGTCATCTCTCTTATCCACAGACTCTGCATTAGTTTGCCATCAAAATAAAAGAACATAACAAATGCCTCTTGGATACTTGA
TTGCTATGATACCTGCGTTCGTCGTCTCCGCCATTATGATATTCAAGCCCTTGCTCGTCCGTGCACACAGGCGATAAGTTCCGTAGCCGAAAAGAGTGCGTAGATACTTGGCATCGGCCAGGAACTGTAATAGTTCTCAAGAAATGGGGAATAATAAGCCGAAAAAACAAACAAGACCTAAACAGGTTAAAGAAGTGGAT
GTTCAAGGCACCGATGAGCGGAATCAAATCAGAAAACAGCCCAAGCGCACGGCTACGAGAATGGATTACAAGGAAAAAAAGCTTCGTCTCGACAAAGAACAGTCAATTATTGAAGCCAAGAAGTATCGAACAACAGACCAGGAGGACGTCGCTATCTTACTTACAGTGGATGCGCAAGAATCGGACGAAAGTCCTCCGCA
AAGGCGTTTAACGGATTTCACTGTCCATGACGATCAGGGTAAATCTCAGGGCATCGAAATGGTAAACGTAATTAACCTGTACATTTCTGGTTATATTTTTCCAAAGAATAGTTCGTTGGACAAATCAGAAGGGGTCCGCTGCGAGGGTTTTGGGCGTGTAGAGACATGGTCTATAACCGGTTATGAGGATGGGTTTCCTA
TTGTCTGGCTCACAACGGATGCAGCAGAGTATATCTGCGTCCAGCCTTCGGGTTCATACAACAAATTCTTCACCATTTTGCACGAGAAGGCAATGCTATGTGTCGAGGTTTATCGTGCCCTATCAAAGGCTGATGGTGGCAATCCTGAGCTAGGGTTGAATGAATTAGTGGCTCGGGTGAACCGGTCCATTTCCAAGAAC
TATCAGGGAATGTCTATGGGGCGAGATTTCATTGTGTCTCAGGGTTCTTTTATTGCGAATCAGCTAGAAGCTCTGGATGATGATTCATCAGAGAATGAACAGCACTTCACGGGTCTGCCTTCTCTCATAGCTCTGGAGAACGAGTGCGTAAAGTTCTCAAAGAGGGAATCGGAAGGGGTAAAAATTGGGGAGTCTTCGAC
TGCATCTTCTTCCTCTGCCCCGGTTGCTGACAAGGATGAAAAACTGGCGAGATCGATTCACGAGGAGAAAGACTGGAAGGCTGCAAAACCAAGTCGCAAGTCTCAGGAGAAGAAGTTTTACATCAAGATCAATGAGGATGAAATTGTCAATGATTATCCTTTACCAGCATTTTATAAGGCAGATGAAGATGAAATGGATG
AATATGTCCTTTTTGATGACTATTCATCTGCATTAACTCCCGATAGTCTTCCCCACAGAATGTTACACGATTGGTCTATCTATAACTCTGATTCCAGGCTTGTTTCATTAGAACTTCTTCCTATGCTTGGCAGCACCGAGACAGATACTGAAATATTTGGTTCAGGAATCATGACTGAAGATGATGGCAGTGGATATTGT
CTTGATGATGGCTCTGCAGAGGGTCACAAGTATGAAGAAAAACAGCCACAAGGAATTCGCATATACCTGAGTGCAATCAAGGAATGGTTGATTGAATTCAGAGCTAATATGCTCTTTATATCAATTCGCACTGATGGGGCTTGGTATAGACTTGGTAAACCCTCGAAGCAGTATTCCCCTTGGTATAAGCCTGTGCTGAA
AACAGCTAGAATTGCAATCAAAGTAATTGTAATGTTGAAGGAGCAGAGCCGTGTTTCCAAGATTTTGTTCTCAGATGTGATCAGGAAACTGGCAGACCAAGACAAAGGTGAACCGACTTTTATCTCATCTAACTTGGCAGATGTAGAGAGGTATGTTATAGTTCATGGTCAGATAATTTTGCAGCAATTTGCAGAGTATC
CAGATGAATGTATCCAAAGGAGTGCCTTTGTGACAGACCTTTCAACCAAGATGGAACAAAGGCATCACACAAAACTAGCTTTGACAAAGAAGAAAGTAATAGTCAAGGCAAAAAATCTGAATCCCCGGGCCATTGTGAGACTTGATACTACCAAGCCGAAAGCAATGCGTGCAACTATGACAAAGCTTATAAATCGCATC
TGGAGTGAGTATTATTCATGCTCTGCATTGGAAGAAGCCATGGACTTTGCTGATAATGGTGACAATGATGTAGAGGAACAGGAAGACCAGGAAGACAGTGAAGATGACGAGGATACAAATTTGGCTTCAGAGATTGCAACAAAACCATATCCCCCAATCAGAAAAGGGAAGGGCAGACCAAACCGAAAAGATGCAAGCTG
GGTGGGAAATTGTATGGGTAAAACAAGGTTTGGTGAACCCCTCTACAAGAGTGCCTCTGTTCATGGAGTTATTGTTGCTGTGGGTGGTGCAGTTTTAGTGGATTTAGATGAACAGAATTTGCCAGTTATTCTTTTTGTGGAATACATGTGTGAGAAATCTCATGGTACAAAAATCCTTCATGGAAGGGTGCTTCAGAGAG
GAAGCCAAACTGTGCTAGGAAATGCAGCTAATTCAAGAGAAGTTTTTTTGACTAGTCAATGCCTACATATTGATCTGAATGATGTAAAAGAGACCGTAGAAGTGGATATCAGGTTACGACCTTGGGGTCATCAATATCGGAAGGAAAACTTTTCCGCAGATGAAGCTGATAGGTTACGAGCTGTGGAGCGTGAGCGGAAG
AGGCTGCCTGTGGAATACTTCTGCAAATATCTGTATTCCCCTGAGAGGGGTGCTTTTCTTTCTCTTCCTTATGACACTCTAGGCCTTGGTAATGGCCAATGTCTTTCTTGCAGACTCAGAGAACACGAAAAACAGAGTCATAAACTCTACATGCTTAAAAATAAGGATGGGTTTAGGTATGAAGGTGTGGAGTACTATCT
TTCTGATTTTATTTATGTGGACCCAGAGCAATTTCCTCCACTTGGAGAAGAAAAGGAACCAATAGAAAGATTCAAAGCAAGTAGGAATAGAGGGCTTAGAGCCTACATTGTTTGCCAGATTTTAGAGATTAGAAGTTCAAGTAGCTTAAATAAAGGTGAATTAAAGCCCACAGAAATAATAGCTAGGAGATTCTACCGGC
CAGAGGACATCGGGACTGAAAAGGCTTATACTGCTGACATCAGAGAGGTCTATTATAGTGATGAAACTGCTACTATAGAAGTGAGTGCAATAAAGGGAAAATGTGAAGTTAGAAGACATCAGTATTTATCTCTAGTACCTGGCAATGCTATTTTTGATCACATTTTCTTTTGCAGCTGCATCTACAATCCAAAGAAGGGC
ACATTCATGCAGTTGCCTGCAAATGTCAAGTTAAGCTCTTCAAAAAGCATGGTAGGCAAGAAGAACAAGCGTCTTGTACATGAAACTGCAAGTGCTAAGCGAAAGGGAAACACCATTTCAGTTGAACAATCTGCAGAAGAGATGTTAGAAGCCTCTCATGATTGTCGTTTGTCAACACTAGATATTTTTGCTGGCTGTGG
TGGTTTGTCAAAGGGGTTGCAAAAATCAGGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTG
AGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGAATTCCTTCCAGAATGGCCAGACCCT
ATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGAATGATCCGGTCTCTTGGTTTCAAAA
GCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGCCTGCCAAACACTGCTGATCGGCATA
ATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTGCGGTAATATACAAAGCATGTATCAT
CAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAATAAAACCCTCAGAATTCTGGAGGTCT
CTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGAGATATCTTTCGTAATTTTGCAGAAG
TTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGCTATATTTCTGACTCTAAACCTTTGTAATTAAACATCTATTCACTTTTTATTTGCTTCCCTCGTAAAATACTCATGAACATCAAATTTAAC
Intron 10 GTAATCGTTT ... CAAAAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.04 | 96 | 144 | 91 |
| A2 | 53.59 | 110 | 194 | 60 |
| A3 | 57.61 | 71 | 110 | 83 |
| A4 | 53.37 | 83 | 135 | 55 |
| A5 | 55.65 | 53 | 112 | 21 |
| A6 | 60 | 13 | 15 | 24 |
| A7 | 50.99 | 62 | 26 | 103 |
| A8 | 58.26 | 24 | 7 | 60 |
| A9 | 51.45 | 42 | 6 | 83 |
| A10 | 48.63 | 75 | 29 | 113 |
>TRINITY_DN46656_c0_g1_i1 from sample A7 / Example spliced isoformGTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATT
GGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGG
GAGGAGATATTGATGACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGG
>TRINITY_DN46656_c0_g1_i5 from sample A7 / Example unspliced isoform:GTGGGATTATATCTTCATCGGTTCATATGCACACATGATCTAAAGTAGCGGGAAAATATTCGTATTCTTGAGGAGAAAAGCATATGCAGATGATTCGTTGTCATTCTGGTGAACGGCTAACCGGGCCGAGTTGAAGCCAGGAAGATGTGCCTCGGACTTCATCAGAATCGCTGAAACCCTAAAATCTTAGCGACGATATT
GGTGATGATGATGTGAAACCCTATAAATCTTGACGACGATCGAGTTAATGCTTCATTTTTCCTGAATTCCTgtaatcgtttaaaccgaattgttttctacggctcattcttgaagtattttggaccattccccatttattcttatgccttcttggtcaatttggaacaatttagggttattgggaacgatgcagaggtgc
gtctgcagtgagaaatgttggtcgacttccagtcaagattacaaagtcaagctggtcaatttcgactaagcttcggcggaatttggtgtcaaaaactggatatctgtttctggtggattattgtgaattctagtgcaaaaacaacaatttcttttggtttttgctgtatgtcgtgtggcaatgtcatggcatgctttaaa
aaatgagagttccgatagaaattcactttcagagcgacgatttttgggccatctggatcgttctggcttagtttatgtaaaatttaccatttttctgaatcccgatcatcttttatgtgcagataagaggagtttgtgagtatttgggattcaagcagctatacgttttgcagtttttttgaataaaatcactgcatatt
agcatgaaaatggccatatcaccgtcgttttagttgcctgcaagatttgtggtgccggctggttattttgtttccttgcttaatatcttggtcaagatttttgctttcgttggttgctaaatttggagggtcagttgtctttctccgctaaatatagaggacttcttacgaggccgaataaaactctggaatgattttct
agcttgagtcgaacttttaaacatggcgagctgctatataacgtcttgatccgatttgttaaaacgccgaggcgtttgggcattcatgccccgtcaaagctaaaggctctccactttggctttgttgcggccggtattggcggaaattttggagacgtaagggatttttttggggaaaaaatcaccgcaaaccttagtcc
agccccgctctttgcgcaatgaaattatcggtttaattgccaaggtacacggagtgtataaaatgcggatttcagttgaagacacaccttcaaagactttttgttaatggcggcggctggggcatccggcctgattcagcgggagcaacaagaaggcattgtgctccaaatgatcgcgaccgatgctcgaattcggcggc
cttacatttcttccacaggtattgacgaattcctttattcacgtcatctctcttatccacagactctgcattagtttgccatcaaaataaaagaacataacaaatgcctcttggatacttgattgctatgatacctgcgttcgtcgtctccgccattatgatattcaagcccttgctcgtccgtgcacacaggcgataag
ttccgtagccgaaaagagtgcgtagatacttggcatcggccaggaactgtaatagttctcaagaaatggggaataataagccgaaaaaacaaacaagacctaaacaggttaaagaagtggatgttcaaggcaccgatgagcggaatcaaatcagaaaacagcccaagcgcacggctacgagaatggattacaaggaaaaa
aagcttcgtctcgacaaagaacagtcaattattgaagccaagaagtatcgaacaacagaccaggaggacgtcgctatcttacttacagtggatgcgcaagaatcggacgaaagtcctccgcaaaggcgtttaacggatttcactgtccatgacgatcagggtaaatctcagggcatcgaaatggtaaacgtaattaacct
gtacatttctggttatatttttccaaagaatagttcgttggacaaatcagaaggggtccgctgcgagggttttgggcgtgtagagacatggtctataaccggttatgaggatgggtttcctattgtctggctcacaacggatgcagcagagtatatctgcgtccagccttcgggttcatacaacaaattcttcaccattt
tgcacgagaaggcaatgctatgtgtcgaggtttatcgtgccctatcaaaggctgatggtggcaatcctgagctagggttgaatgaattagtggctcgggtgaaccggtccatttccaagaactatcagggaatgtctatggggcgagatttcattgtgtctcagggttcttttattgcgaatcagctagaagctctggat
gatgattcatcagagaatgaacagcacttcacgggtctgccttctctcatagctctggagaacgagtgcgtaaagttctcaaagagggaatcggaaggggtaaaaattggggagtcttcgactgcatcttcttcctctgccccggttgctgacaaggatgaaaaactggcgagatcgattcacgaggagaaagactggaa
ggctgcaaaaccaagtcgcaagtctcaggagaagaagttttacatcaagatcaatgaggatgaaattgtcaatgattatcctttaccagcattttataaggcagatgaagatgaaatggatgaatatgtcctttttgatgactattcatctgcattaactcccgatagtcttccccacagaatgttacacgattggtcta
tctataactctgattccaggcttgtttcattagaacttcttcctatgcttggcagcaccgagacagatactgaaatatttggttcaggaatcatgactgaagatgatggcagtggatattgtcttgatgatggctctgcagagggtcacaagtatgaagaaaaacagccacaaggaattcgcatatacctgagtgcaatc
aaggaatggttgattgaattcagagctaatatgctctttatatcaattcgcactgatggggcttggtatagacttggtaaaccctcgaagcagtattccccttggtataagcctgtgctgaaaacagctagaattgcaatcaaagtaattgtaatgttgaaggagcagagccgtgtttccaagattttgttctcagatgt
gatcaggaaactggcagaccaagacaaaggtgaaccgacttttatctcatctaacttggcagatgtagagaggtatgttatagttcatggtcagataattttgcagcaatttgcagagtatccagatgaatgtatccaaaggagtgcctttgtgacagacctttcaaccaagatggaacaaaggcatcacacaaaactag
ctttgacaaagaagaaagtaatagtcaaggcaaaaaatctgaatccccgggccattgtgagacttgatactaccaagccgaaagcaatgcgtgcaactatgacaaagcttataaatcgcatctggagtgagtattattcatgctctgcattggaagaagccatggactttgctgataatggtgacaatgatgtagaggaa
caggaagaccaggaagacagtgaagatgacgaggatacaaatttggcttcagagattgcaacaaaaccatatcccccaatcagaaaagggaagggcagaccaaaccgaaaagatgcaagctgggtgggaaattgtatgggtaaaacaaggtttggtgaacccctctacaagagtgcctctgttcatggagttattgttgc
tgtgggtggtgcagttttagtggatttagatgaacagaatttgccagttattctttttgtggaatacatgtgtgagaaatctcatggtacaaaaatccttcatggaagggtgcttcagagaggaagccaaactgtgctaggaaatgcagctaattcaagagaagtttttttgactagtcaatgcctacatattgatctga
atgatgtaaaagagaccgtagaagtggatatcaggttacgaccttggggtcatcaatatcggaaggaaaacttttccgcagatgaagctgataggttacgagctgtggagcgtgagcggaagaggctgcctgtggaatacttctgcaaatatctgtattcccctgagaggggtgcttttctttctcttccttatgacact
ctaggccttggtaatggccaatgtctttcttgcagactcagagaacacgaaaaacagagtcataaactctacatgcttaaaaataaggatgggtttaggtatgaaggtgtggagtactatctttctgattttatttatgtggacccagagcaatttcctccacttggagaagaaaaggaaccaatagaaagattcaaagc
aagtaggaatagagggcttagagcctacattgtttgccagattttagagattagaagttcaagtagcttaaataaaggtgaattaaagcccacagaaataatagctaggagattctaccggccagaggacatcgggactgaaaaggcttatactgctgacatcagagaggtctattatagtgatgaaactgctactatag
aactgcatctacaatccaaagaagggcacattcatgcagttgcctgcaaatgtcaagttaagctcttcaaaaagcatggtaggcaagaagaacaagcgtcttgtacatgaaactgcaagtgctaagcgaaagggaaacaccatttcagttgaacaatctgcagaagagatgttagaagcctctcatgattgtcgtttgtc
aacactagatatttttgctggctgtggtggtttgtcaaaggggttgcaaaaatcagGAGTAAGCTTTACCAAGTGGGCTATCGAGTATGATCAAGCGGCTGCAGAATCGTTCAAGCTCAATCACCCAGAGGCTGAGGTTTTTTGCCAGGATTGCAACGTTATACTAAGGTCAATCATGGAAAAGGGAGGAGATATTGATG
ACTGCATTTCGACATCAGAGGTGGCTGAGCTATGTTTAGAACTTACTGATGAGCAAAAGACCAAGCTGCCCTTGCCAGGACAAGTGGATTTCATTGATGGTGGACCGCCTTGTGAGGGTTTTTCTGGAATGAATAGATTTAACCAAAGAACTTGGAGTGAAGTGCAATGGGAGATTGTATTGACATTCCTCTCATATGCT
GATTATTTTCGGCCAAGATTCATTTTATTGGAGAATGTCAGAAATTTTGTATCCTTCAACAAAGGTCAGACATTTTGTCTTATGCTGGCGTCACTCTTGGAAATGGGGTATCAGGTGCAATTTGGGGTTCTTCAAGCAGGAAACTATGGGGTTTCACAATCCCGTAAAAGGGCATTTATTTGGGCAGCTTCACCTGAGGA
ATTCCTTCCAGAATGGCCAGACCCTATGCATGTTTTTTCTAGTTCACAGCTAAAAATATCCTTGCCTGGAGGTTTACAGTATGCTGCAGTGAGAGATGCTGCATTGGGTGCACCTTTTCGTTCTATAACAGTGAGAGATACAATTGGCGACTTGCCACCTGTTGATAATGGCGCAGATCAGTTGGAAACAACATATCGGA
ATGATCCGGTCTCTTGGTTTCAAAAGCAAATCCGTGATACAGAAGTTGTCCTTTGTGACCATATATCCAAGGAAATGAATGAATTGAATTTCAAACGTTGCCAACGAATCCCTAAGCGCCCGGGTGCCGATTGGCGAGATCTTCCCGAGGAAAAGGTTAAGTTGTCTACTGGGCAAATAGTTGATCTCATTCCTTGGTGC
CTGCCAAACACTGCTGATCGGCATAATCAATGGAAAGGTCTTTTTGGAAGATTAGATTGGGAAGGAAACTTCCCTACGTCTATTACAGATCCACAATCTATGGGCAAAGTAGGCATGTGCTTTCATCCTGAGCAAGACCGTATCATTACTGTTCGAGAATGTGCACGCTCCCAAGGTTTTCCAGACACATACAAGTTTTG
CGGTAATATACAAAGCATGTATCATCAAATTGGAAATGCAGTGCCTCCACCATTGGCATTGGCTCTAGGCAGAAAACTAAAGGAAGCAGTGGAAGCCAAAAGATTAATAAGCTGAGCTCAAGTTGAGTGGGGAAATGCAAAACGAGTCCAAATTTTTGATCCAAACCGCAATGGTCAGGAGAGACATTGATGGTAAAAAT
AAAACCCTCAGAATTCTGGAGGTCTCTTTGTAAGATATTGAAGGGGAATATAGTGGATAAATCCCCTGGAAATTGTAATTTGTTTATTTTTACAGATGTAATCAGCCATATTCATTCAATCTTCCTCAATGAAATCCCTGATCAAGGCAATTTTTGGAAAAATGATTTCATGGAATCCCTTCCATCGGGTTATGTCTTGA
GATATCTTTCGTAATTTTGCAGAAGTTACCTCTATTTGCATGCATGGTAAAGTCAAAATCCCAAGTTGGTAATTTTCTAAGTCACAGTTCAGCC