sp|Q8L7T9|MNM1_ARATH ----> Protein METABOLIC NETWORK MODULATOR 1
Intron 1 GTATTGACTT ... GGACGCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.04 | 30 | 12 | 47 |
| A2 | 62.24 | 37 | 3 | 61 |
| A3 | 70.41 | 29 | 6 | 69 |
| A4 | 63.64 | 28 | 7 | 49 |
| A5 | 50 | 15 | 4 | 15 |
| A6 | 66.67 | 42 | 11 | 84 |
| A7 | 60.34 | 71 | 17 | 108 |
| A8 | 57.5 | 68 | 17 | 92 |
| A9 | 63.68 | 85 | 8 | 149 |
| A10 | 59.61 | 82 | 11 | 121 |
>TRINITY_DN113521_c0_g1_i3 from sample A1 / Example spliced isoformAGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGAAAGTCTGGACTGTCATTGA
GTGATTGTTATATCTAAAATTGTAGCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACGAGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAG
GACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGATTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCAC
CAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCTGCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTT
CAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAA
AGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTG
TCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAAATCTTCATTGAAGGTTGCTTATGGGAAAACTCAAATGCTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAAT
TTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGGG
>TRINITY_DN113521_c0_g1_i4 from sample A1 / Example unspliced isoform:AGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGgtattgacttcgtattttga
tgttaatagcaaatgatttgatcagtattttgtattatgtttggaattctaagcatcgacagcgaagtttcgagggatagatgtagtactagcagtaggccggtaggtagttttggctttgccagaaaaggaatctgaaaaatcttttacggttaaaaacagatgatgtgatacgaacctcaaatctggaccataccttc
gtctgggaaacggaaaaaagaaacaaaaaaaaattcacagagcgacaggcacgggctgtgcagaaaactgtgcataactcagcagtatcatcaaagtttctgcagtacggtgccaattctcagacctttttgctcctaatttaatcagatcgcttcaaagtcgttgtgatcaactggcattttccgtttgccttcgagcg
cgtagccgatcgctgcggtttaccgtcattttattattatttttaacggcgggcaccgtttacgaatccttggtcttctcgcggtactctatttacagcttttttttgttcgtttgtccggtcttcgacaacaggctcggtctttggaggatttgtttctgtttgttcgagtgcgttcttcaaagagttgtggagtatcg
gaatgactttgtcttaggttaaggttcgaagctccgggcctttcattggatattttcagggagttaggacgccaagAAAGTCTGGACTGTCATTGAGTGATTGTTATATCTAAAATTGTAGCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACG
AGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGA
TTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCT
GCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAA
TTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTC
CTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAAATCTT
CATTGAAGGTTGCTTATGGGAAAACTCAAATGCTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGGG
Intron 2 GTACGGTGCC ... TGCCTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.43 | 3.6 | 14 | 6.9 |
| A2 | 57.21 | 9.9 | 13 | 13 |
| A3 | 65.38 | 6.9 | 18 | 6.8 |
| A4 | 59.57 | 11.3 | 18 | 14 |
| A5 | 63.97 | 5.3 | 9 | 9 |
| A6 | 59.79 | 14.7 | 25 | 17 |
| A7 | 58.03 | 24.7 | 37 | 27.8 |
| A8 | 47.76 | 16.1 | 9 | 19.7 |
| A9 | 60.61 | 14.3 | 24 | 19 |
| A10 | 54.76 | 29.2 | 46 | 19.9 |
>TRINITY_DN105476_c0_g1_i6 from sample A3 / Example spliced isoformGTATCATCAAAGTTTCTGCACGCGTAGCCGATCGCTGCGGTTTACCGTCATTTTATTATTATTTTTAACGGCGGGCACCGTTTACGAATCCTTGGTCTTCTCGCGGTACTCTATTTACAGCTTTTTTTTGTTCGTTTGTCCGGTCTTCGACAACAGGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTC
TTCAAAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGGTAACGGTCCCCTTTCTTTGACGTTATAGTTAAAATGTATGGTAC
>TRINITY_DN105476_c0_g1_i4 from sample A3 / Example unspliced isoform:TAGATGTAGTACTAGCAGTAGGCCGGTAGGTAGTTTTGGCTTTGCCAGAAAAGGAATTTGAAAAATCTTTTACGGTTAAAAACAGATGATGTGATACGAACCTCAAATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAA
CTCAGCAGTATCATCAAAGTTTCTGCAgtacggtgccaattctcagacctttttgctcctaatttaatcagatcgcttcaaagtcgttgtgatcaactggcattttccgtttgccttccagCGCGTAGCCGATCGCTGCGGTTTACCGTCATTTTATTATTATTTTTAACGGCGGGCACCGTTTACGAATCCTTGGTCTT
CTCGCGGTACTCTATTTACAGCTTTTTTTTTGTTCGTTTGTCCGGTCTTCGACAACAGGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAG
CTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACGAGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACAT
TCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGATTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGA
AGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCTGCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGG
AACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTT
GCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTA
GCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGT
Intron 3 GTTTGTAATT ... ACATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.41 | 19.7 | 10 | 3 |
| A2 | 31.05 | 36 | 16 | 2 |
| A3 | 2.27 | 46 | 1 | 1 |
| A4 | 7.98 | 36.7 | 3 | 3 |
| A5 | 29.92 | 7.3 | 3 | 0 |
| A6 | 4.13 | 50.3 | 2 | 3 |
| A7 | 15.06 | 64.7 | 11 | 0 |
| A8 | 2.65 | 41 | 1 | 0 |
| A9 | 3.98 | 74.3 | 3 | 0 |
| A10 | 18.66 | 53.7 | 12 | 0 |
>TRINITY_DN113521_c0_g1_i6 from sample A1 / Example spliced isoformAGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATGATGTGATACGAACCTCA
AATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGTACGGTGCCAATTCTCAGACCTTTTTGCTCCTAATTTAATCAGATCGCTTCAAAGTCGTTGTGATCAACTGGCATTT
TCCGTTTGCCTTCGAGCGCGTAGCCGATCGCTGCGGTTTACCGTCATTTTATTATTATTTTTAACGGCGGGCACCGTTTACGAATCCTTGGTCTTCTCGCGGTACTCTATTTACAGCTTTTTTTTGTTCGTTTGTCCGGTCTTCGACAACAGGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCA
AAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGGTAACGGTCCCCTTTCTTTGACGTTATAGTTAAAATGTATGGTACACGTGGTAACGTCTTAGAAGCTTCTTTGCCTTTGAAATCGAACTTACCTTTTCATAAACTC
CGATCTTTACCGTCGGACTTTTCATGCTGTAGAAAAAAAATAATCTGAAGGCAGTATAAACCAGACATTCGGGGTTTTATGCCAGAAATTTGAAGAATGCAGAGTTGTTAGACATATCGATTTCTTTTGGTTTCACTCAACTCTGCGGCTATAGGTTAACCAAACGCAGAAATTCTAATTCGGTTTTGAAATAGCGGCAA
GGGACATTTAAGCTTTTGCCTTTGTTAGGGGTGC
>TRINITY_DN113521_c0_g1_i5 from sample A1 / Example unspliced isoform:AGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATGATGTGATACGAACCTCA
AATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGTACGGTGCCAATTCTCAGACCTTTTTGCTCCTAATTTAATCAGATCGCTTCAAAGTCGTTGTGATCAACTGGCATTT
TCCGTTTGCCTTCGAGCGCGTAGCCGATCGCTGCGGTTTACCGTCATTTTATTATTATTTTTAACGGCGGGCACCGTTTACGAATCCTTGGTCTTCTCGCGGTACTCTATTTACAGCTTTTTTTTGTTCGTTTGTCCGGTCTTCGACAACAGGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCA
AAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGgtttgtaatttcctgttcttttacccctatttttctgtttccagtcaagatatttcattttagccctggcacaagttcttgacgctccatacccgagggattcgctgttgtcgatctttgttaattcttctagcggactttgcagctccagcttctcaa
taatttacggtaaacggatactctttaaattttatctcggtcgtcctaaagctgcaatcctccgctatttaaatggtgtctttatgcgttttaccaaaacatttcaagtcgtttttcacggacattcgccacattgtttgacgctaaaatttgctgatttgagctcagctcaaattttcttttgcattttatctttcgga
ttctcacaggttatttaactccgaaaagcgatctgtcaaagttatttttcagtcttttttgttgcggttaaaatcgtaatttaacgggtcgcagaattggatacatttacagGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGGTAACGGTCCCCTTTCTTTGACGTTATAGTTAAAA
TGTATGGTACACGTGGTAACGTCTTAGAAGCTTCTTTGCCTTTGAAATCGAACTTACCTTTTCATAAACTCCGATCTTTACCGTCGGACTTTTCATGCTGTAGAAAAAAATAATCTGAAGGCAGTATAAACCAGACATTCGGGGTTTTATGCCAGAAATTTGAAGAATGCAGAGTTGTTAGACATATCGATTTCTTTTGG
TTTCACTCAACTCTGCGGCTATAGGTTAACCAAACGCAGAAATTCTAATTCGGTTTTGAAATAGCGGCAAGGGACATTTAAGCTTTTGCCTTTGTTAGGGGTGC
Intron 4 GTACGGTGCC ... TCGACAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.36 | 15 | 14 | 8.9 |
| A2 | 49.1 | 20.7 | 13 | 26.9 |
| A3 | 33.89 | 35.8 | 18 | 18.8 |
| A4 | 35.37 | 27.8 | 18 | 12.5 |
| A5 | 47.46 | 5 | 9 | 0.1 |
| A6 | 43.21 | 29.7 | 25 | 20.2 |
| A7 | 43.66 | 45.6 | 37 | 33.6 |
| A8 | 35.42 | 17.9 | 9 | 10.6 |
| A9 | 44.86 | 27.7 | 24 | 21.1 |
| A10 | 45.76 | 42.7 | 46 | 26.1 |
>TRINITY_DN113521_c0_g1_i1 from sample A1 / Example spliced isoformAGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATGATGTGATACGAACCTCA
AATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAGTATCGGAATGACTTTGT
CTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGAAAGTCTGGACTGTCATTGAGTGATTGTTATATCTAAAATTGTAGCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACGAGGACGGCCTAG
AAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGATTACTGTGAGAG
TTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCTGCTCCTGTCACT
GAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAATTTAAAAACAGC
AGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTCCTGTAGAATTTG
GTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAAATCTTCATTGAAGGTTG
CTTATGGGAAAACTCAAATGCTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGGG
>TRINITY_DN113521_c0_g1_i6 from sample A1 / Example unspliced isoform:AGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATGATGTGATACGAACCTCA
AATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAgtacggtgccaattctcagacctttttgctcctaatttaatcagatcgcttcaaagtcgttgtgatcaactggcattt
tccgtttgccttcgagcgcgtagccgatcgctgcggtttaccgtcattttattattatttttaacggcgggcaccgtttacgaatccttggtcttctcgcggtactctatttacagcttttttttgttcgtttgtccggtcttcgacaacagGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCA
AAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGGTAACGGTCCCCTTTCTTTGACGTTATAGTTAAAATGTATGGTACACGTGGTAACGTCTTAGAAGCTTCTTTGCCTTTGAAATCGAACTTACCTTTTCATAAACTC
CGATCTTTACCGTCGGACTTTTCATGCTGTAGAAAAAAAATAATCTGAAGGCAGTATAAACCAGACATTCGGGGTTTTATGCCAGAAATTTGAAGAATGCAGAGTTGTTAGACATATCGATTTCTTTTGGTTTCACTCAACTCTGCGGCTATAGGTTAACCAAACGCAGAAATTCTAATTCGGTTTTGAAATAGCGGCAA
GGGACATTTAAGCTTTTGCCTTTGTTAGGGGTGC
Intron 5 GTTCGAAGCT ... GGACGCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.66 | 19 | 11.5 | 26 |
| A2 | 69.58 | 12 | 29 | 26 |
| A3 | 70.06 | 11 | 27.5 | 24 |
| A4 | 81.07 | 7 | 30.5 | 29.5 |
| A5 | 89.73 | 1 | 9.5 | 8 |
| A6 | 75.81 | 13 | 39.5 | 42 |
| A7 | 67.9 | 26 | 52 | 58 |
| A8 | 69.81 | 12 | 25.5 | 30 |
| A9 | 74.19 | 22 | 62.5 | 64 |
| A10 | 62.34 | 29 | 47 | 49 |
>TRINITY_DN43120_c0_g1_i3 from sample A10 / Example spliced isoformGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACGAGGACGGCCTAGAAAATCAGACACAGTTCTAC
TTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGATTACTGTGAGAGTTGGAGATACTGATACAATT
TTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCTGCTCCTGTCACTGAATACACACCTACAGAATC
TGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCA
GTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTT
CAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAAATCTTCATTGAAGGTTGCTTATGGGAAAACTCAAATG
CTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGAAAACTGCTCTTTCCAAATCCGAAGTTTTAGAAATATTCTTTGGATACGAAAGAGTCTGGTGCAATTGATAGTTTTCAGTTACTGTCCTCTGC
CTGGATCTTTTCTTTTGCTGGAATCCCCG
>TRINITY_DN43120_c0_g1_i5 from sample A10 / Example unspliced isoform:CCGTAATTAAACTCCAAAGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATG
ATGTGATACGAACCTCAAATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAG
TATCGGAATGACTTTGTCTTAGGTTAAGgttcgaagctccgggcctttcattggatattttcagggagttaggacgccaagCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACGAGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGA
GAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGATTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGG
AGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCTGCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTA
CACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTAT
GTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGG
CAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAAATCTTCATTGAAGGTTGCTTATGGGAAAACTCAAATGCTTCTTTA
GTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGAAAACTGCTCTTTCCAAATCCGAAGTTTTAGAAATATTCTTTGGATACGAAAGAGTCTGGTGCAATTGATAGTTTTCAGTTACTGTCCTCTGCCTGGATCT
TTTCTTTTGCTGGAATCCCCG
Intron 6 GTACGGTGCC ... TCGACAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.4 | 15 | 14 | 9 |
| A2 | 49.4 | 21 | 13 | 28 |
| A3 | 34.55 | 36 | 18 | 20 |
| A4 | 35.63 | 28 | 18 | 13 |
| A5 | 47.37 | 5 | 9 | 0 |
| A6 | 43.4 | 30 | 25 | 21 |
| A7 | 43.9 | 46 | 37 | 35 |
| A8 | 35.71 | 18 | 9 | 11 |
| A9 | 45.1 | 28 | 24 | 22 |
| A10 | 45.91 | 43 | 46 | 27 |
>TRINITY_DN105476_c0_g1_i5 from sample A3 / Example spliced isoformGTAATTAAACTCCAAAGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATGAT
GTGATACGAACCTCAAATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAGTA
TCGGAATGACTTTGTCTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGGTAACGGTCCCCTTTCTTTGACGTTATAGTTAAAATGTATGGTAC
>TRINITY_DN105476_c0_g1_i4 from sample A3 / Example unspliced isoform:TAGATGTAGTACTAGCAGTAGGCCGGTAGGTAGTTTTGGCTTTGCCAGAAAAGGAATTTGAAAAATCTTTTACGGTTAAAAACAGATGATGTGATACGAACCTCAAATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAA
CTCAGCAGTATCATCAAAGTTTCTGCAgtacggtgccaattctcagacctttttgctcctaatttaatcagatcgcttcaaagtcgttgtgatcaactggcattttccgtttgccttccagcgcgtagccgatcgctgcggtttaccgtcattttattattatttttaacggcgggcaccgtttacgaatccttggtctt
ctcgcggtactctatttacagctttttttttgttcgtttgtccggtcttcgacaacagGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAG
CTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACGAGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACAT
TCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGATTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGA
AGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCTGCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGG
AACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTT
GCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTA
GCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGT
Intron 7 GTTATTTAAC ... ACATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 10 |
| A2 | 88.89 | 1 | 2 | 8 |
| A3 | 100 | 0 | 1 | 19 |
| A4 | 80 | 4 | 5 | 16 |
| A5 | 100 | 0 | 4 | 1 |
| A6 | 85.19 | 4 | 5 | 23 |
| A7 | 86.67 | 2 | 0 | 13 |
| A8 | 90.91 | 2 | 0 | 20 |
| A9 | 64 | 9 | 4 | 16 |
| A10 | 100 | 0 | 0 | 10 |
>TRINITY_DN42006_c0_g1_i2 from sample A6 / Example spliced isoformATGCGTTTTACCAAAACATTTCAAGTCGTTTTTCACGGACATTCGCCACATTGTTTGACGCTAAAATTTGCTGATTTGAGCTCAGCTCAAATTTTCTTTTGCATTTTATCTTTCGGATTCTCACAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGCTCAACTAGAAACTGTTGAAT
TCGAGAAGCTAGATCATAAATTGTCTTTGTGGAGGACTCTTTAGAACACTTCTTATTGGTTGATAAATTAGAGAAAGGATGGATGCTGATCAACAAAAAACAAGCACTGATGGAAGTTCCAAAATAATTGTGGATGTTAAAAGATGGCAGGCAACTGACTTGTGTAAGAACATTAGAAAGGGTAGAAAAATACTTTAGGG
GACTTTCCAGTTCGACGGATTATTAGTACAGCACCGTTTCCCACCATCCATAAAAGCAAACTTAATTTTTCTTCATACAAAACTTTATTCTGGATTTTGTTAATTTAGTGTGAGAAAATTGTGACTAGATTCAGTGTTTTCAAAATGATTCTGGAGGCAGCCACACAAGGTAGTTCTAAAAGCTTCCTTTGCATGGTAGT
TTGTTAAGAATTTGTGTGTATTCTATAGAGCA
>TRINITY_DN42006_c0_g1_i1 from sample A6 / Example unspliced isoform:ATGCGTTTTACCAAAACATTTCAAGTCGTTTTTCACGGACATTCGCCACATTGTTTGACGCTAAAATTTGCTGATTTGAGCTCAGCTCAAATTTTCTTTTGCATTTTATCTTTCGGATTCTCACAGgttatttaactccgaaaagcgatctgtcaaagttatttttcagtcttttttgttgcggttaaaatcgtaattta
acgggtcgcagaattggatacatttacagGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGAAAGTCTGGACTGTCATTGAGTGATTGTTATATCTAAAATTGTAGCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAA
GAAACGAGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCT
ATCTGATTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTAT
GAGCCTGCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAG
AGTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCA
GAGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGA
AATCTTCATTGAAGGTTGCTTATGGGAAAACTCAAATGCTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGAAAACTGCTCTTTCCAAATCCGAAGTTTTAGAAATATTCTTTGGATACGAAAGAG
TCTGGTGCAATTGATAGTTTTCAGTTACTGTCCTCTGCCTGGATCTTTTCTTTTGCTGGAATTCCCGAAGTGTTAAAATTGAAAAAAGTTGAAAAGCATTGATTTGAGACTGTTGATGAGATGGCCTTATAGTTGGGAGTTATTTTCTCTAAAAAATTCATTACAAAACGAAGCTCATTTGACTGTAATGACAAGAGGCT
GAACCTTTATTTGTATTTTTATAGGTAATCACTGAAACAACTGTTTTTGCT
Intron 8 GTATTGACTT ... TTAAAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.19 | 31 | 12 | 10 |
| A2 | 20 | 24 | 3 | 9 |
| A3 | 23.53 | 26 | 6 | 10 |
| A4 | 18 | 41 | 7 | 11 |
| A5 | 27.66 | 17 | 4 | 9 |
| A6 | 19.38 | 52 | 11 | 14 |
| A7 | 18.14 | 97 | 17 | 26 |
| A8 | 22 | 78 | 17 | 27 |
| A9 | 17.65 | 77 | 8 | 25 |
| A10 | 22.92 | 74 | 11 | 33 |
>TRINITY_DN113521_c0_g1_i5 from sample A1 / Example spliced isoformAGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATGATGTGATACGAACCTCA
AATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGTACGGTGCCAATTCTCAGACCTTTTTGCTCCTAATTTAATCAGATCGCTTCAAAGTCGTTGTGATCAACTGGCATTT
TCCGTTTGCCTTCGAGCGCGTAGCCGATCGCTGCGGTTTACCGTCATTTTATTATTATTTTTAACGGCGGGCACCGTTTACGAATCCTTGGTCTTCTCGCGGTACTCTATTTACAGCTTTTTTTTGTTCGTTTGTCCGGTCTTCGACAACAGGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCA
AAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGGTTTGTAATTTCCTGTTCTTTTACCCCTATTTTTCTGTTTCCAGTCAAGATATTTCATTTTAGCCCTGGCACAAGTTCTTGACGCTCCATACCCGAGGGATTCGCTGTTGTCGATCTTTGTTAATTCTTCTAGCGGACTTTGCAGCTCCAGCTTCTCAA
TAATTTACGGTAAACGGATACTCTTTAAATTTTATCTCGGTCGTCCTAAAGCTGCAATCCTCCGCTATTTAAATGGTGTCTTTATGCGTTTTACCAAAACATTTCAAGTCGTTTTTCACGGACATTCGCCACATTGTTTGACGCTAAAATTTGCTGATTTGAGCTCAGCTCAAATTTTCTTTTGCATTTTATCTTTCGGA
TTCTCACAGGTTATTTAACTCCGAAAAGCGATCTGTCAAAGTTATTTTTCAGTCTTTTTTGTTGCGGTTAAAATCGTAATTTAACGGGTCGCAGAATTGGATACATTTACAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGGTAACGGTCCCCTTTCTTTGACGTTATAGTTAAAA
TGTATGGTACACGTGGTAACGTCTTAGAAGCTTCTTTGCCTTTGAAATCGAACTTACCTTTTCATAAACTCCGATCTTTACCGTCGGACTTTTCATGCTGTAGAAAAAAATAATCTGAAGGCAGTATAAACCAGACATTCGGGGTTTTATGCCAGAAATTTGAAGAATGCAGAGTTGTTAGACATATCGATTTCTTTTGG
TTTCACTCAACTCTGCGGCTATAGGTTAACCAAACGCAGAAATTCTAATTCGGTTTTGAAATAGCGGCAAGGGACATTTAAGCTTTTGCCTTTGTTAGGGGTGC
>TRINITY_DN113521_c0_g1_i4 from sample A1 / Example unspliced isoform:AGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGgtattgacttcgtattttga
tgttaatagcaaatgatttgatcagtattttgtattatgtttggaattctaagcatcgacagcgaagtttcgagggatagatgtagtactagcagtaggccggtaggtagttttggctttgccagaaaaggaatctgaaaaatcttttacggttaaaaacagATGATGTGATACGAACCTCAAATCTGGACCATACCTTC
GTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGTACGGTGCCAATTCTCAGACCTTTTTGCTCCTAATTTAATCAGATCGCTTCAAAGTCGTTGTGATCAACTGGCATTTTCCGTTTGCCTTCGAGCG
CGTAGCCGATCGCTGCGGTTTACCGTCATTTTATTATTATTTTTAACGGCGGGCACCGTTTACGAATCCTTGGTCTTCTCGCGGTACTCTATTTACAGCTTTTTTTTGTTCGTTTGTCCGGTCTTCGACAACAGGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAGTATCG
GAATGACTTTGTCTTAGGTTAAGGTTCGAAGCTCCGGGCCTTTCATTGGATATTTTCAGGGAGTTAGGACGCCAAGAAAGTCTGGACTGTCATTGAGTGATTGTTATATCTAAAATTGTAGCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACG
AGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGA
TTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCT
GCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAA
TTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTC
CTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAAATCTT
CATTGAAGGTTGCTTATGGGAAAACTCAAATGCTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGGG
Intron 9 GTTCGAAGCT ... AAAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.17 | 19 | 22.8 | 55 |
| A2 | 80.56 | 12 | 40.5 | 59 |
| A3 | 84.09 | 11 | 53.3 | 63 |
| A4 | 84.82 | 7 | 41.3 | 37 |
| A5 | 90.59 | 1 | 8.3 | 11 |
| A6 | 83.47 | 13 | 59.3 | 72 |
| A7 | 76.58 | 26 | 74 | 96 |
| A8 | 84.54 | 12 | 49.3 | 82 |
| A9 | 83.38 | 22 | 82.8 | 138 |
| A10 | 75.47 | 29 | 59.5 | 119 |
>TRINITY_DN43120_c0_g1_i3 from sample A10 / Example spliced isoformGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAGTATCGGAATGACTTTGTCTTAGGTTAAGCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAGAAACGAGGACGGCCTAGAAAATCAGACACAGTTCTAC
TTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTATCTGATTACTGTGAGAGTTGGAGATACTGATACAATT
TTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATGAGCCTGCTCCTGTCACTGAATACACACCTACAGAATC
TGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGAGTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCA
GTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAGAGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTT
CAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAAATCTTCATTGAAGGTTGCTTATGGGAAAACTCAAATG
CTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGAAAACTGCTCTTTCCAAATCCGAAGTTTTAGAAATATTCTTTGGATACGAAAGAGTCTGGTGCAATTGATAGTTTTCAGTTACTGTCCTCTGC
CTGGATCTTTTCTTTTGCTGGAATCCCCG
>TRINITY_DN43120_c0_g1_i11 from sample A10 / Example unspliced isoform:CCGTAATTAAACTCCAAAGCCTCCGGACCATATCCGTATAAGAGCACACAGTTACAAATCGGTAGCTCCAGAAATCATTGGAAATGCAGCACTCTCGTTTGCAGACTTACCTCGGTCCATGGTGAATTGTGCAAACGAGTGAATTGAAGATGATGGAAAGGGAAGAAGATACGGGGTTGAACGCGTCTGTTTAAAAGATG
ATGTGATACGAACCTCAAATCTGGACCATACCTTCGTCTGGGAAACGGAAAAAAGAAACAAAAAAAAATTCACAGAGCGACAGGCACGGGCTGTGCAGAAAACTGTGCATAACTCAGCAGTATCATCAAAGTTTCTGCAGCTCGGTCTTTGGAGGATTTGTTTCTGTTTGTTCGAGTGCGTTCTTCAAAGAGTTGTGGAG
TATCGGAATGACTTTGTCTTAGGTTAAGgttcgaagctccgggcctttcattggatattttcagggagttaggacgccaagaaagtctggactgtcattgagtgattgttatatctaaaattgtagCTGTTGGTGAAGTCAAAATTATGGAGGGAAATATTAATCATAATGCTGATGTGACGGGGTTATCTGCTAAAAAG
AAACGAGGACGGCCTAGAAAATCAGACACAGTTCTACTTCCAGGAGAAATTACAGCACTTGGTGTTACACCACCTTATGATGGCAAATCTAAAAAGCACAGGACTACAGACACTGATGGTTCACATTCATCTCATGGAAATGGTTCTCTTGTTGGACAGCCTGTCCATGGAGTGCTTGATGGGTCATTTGATGCTGGCTA
TCTGATTACTGTGAGAGTTGGAGATACTGATACAATTTTCCATGGAGTAGTATTTGGACCAGGCCTATCAATACCTCCGTCAAAGATAACAGACATTGCACCAAAGGTAAAAGGTACAAAGAGGGAAGAACATACCGGTTTTCCTTCCTCGTTATACTCACCTCCAGCAGCTACGCCAATGGCCTTGTCAGAAATCTATG
AGCCTGCTCCTGTCACTGAATACACACCTACAGAATCTGGATTTACACCTGAAAATGGGATAGAAGATCAACAAAATTATACAAACTTTGAGATTCCAGTTCAACAGATGGAAGATGCTATTGTGGAACCAATTCGTGGTCAGGCAAATAACCAAGTGAAATCAGCACAATAAGGTGCTCCCTCTGCACACAGCAAAAGA
GTAAATTTAAAAACAGCAGATGCAAAAGCATATGGCAGTTTGTATGTCATTTTGCTTTCCATTGGTATGTACTATGGACTGCAAGGCACTTCTGAGGGTAAAGGAGAATATTATTCCATATCCCTTGCCTAGCAAATTGATTGAAATTTTAACATTGCTTCTTTTCTGGTTCTCTACTTTCATCCTTATTAAATCTTCAG
AGCTCCTGTAGAATTTGGTTATGTGTTTCTCCAAGTTCAAACTGGCAGTAATTTGTTGCAGAAGAATTCTCTACAATGACTCTATTCTATCCACTGTATTGTCTGCTTCTGCAACAGTAGCTTTTAGCATTGATATTTACATAAAGTGATCAAAGCATTTTACTGACAAGGCTGCAGAACTTACATGTATCAATGTAGAA
ATCTTCATTGAAGGTTGCTTATGGGAAAACTCAAATGCTTCTTTAGTTCGTAAACTATGTCAGGAGACAAACATAGTCAACTGTGAAATGGAGGACATAATTTGTGCAAGACATGGGGATTATTAGCCTAGAAATTCAATATGGAAAACTGCTCTTTCCAAATCCGAAGTTTTAGAAATATTCTTTGGATACGAAAGAGT
CTGGTGCAATTGATAGTTTTCAGTTACTGTCCTCTGCCTGGATCTTTTCTTTTGCTGGAATCCCCG