sp|Q8W471|AAE15_ARATH ----> Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic
Intron 1 GTTAGTATGC ... ACTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.15 | 28 | 6 | 4 |
| A2 | 28 | 27 | 15 | 6 |
| A3 | 28.57 | 20 | 10 | 6 |
| A4 | 20 | 30 | 11 | 4 |
| A5 | 17.95 | 16 | 7 | 0 |
| A6 | 15 | 17 | 3 | 3 |
| A7 | 14.55 | 47 | 6 | 10 |
| A8 | 18.07 | 34 | 7 | 8 |
| A9 | 18.45 | 42 | 11 | 8 |
| A10 | 17.65 | 28 | 6 | 6 |
>TRINITY_DN109441_c0_g1_i5 from sample A3 / Example spliced isoformGGGAAGGTAAGGAGATATTCATACCCAACAGTAATGATTTTCGGTGGGTGTCGGCAGCAAATCATAAATGACGTTGTAAAGCCACAGATAAGTGATAATCATGTTTGCAAACGAACGCTAATACTAGCCTCTCCCCTCCGCTTCATCCCGCCAGCGTCATTCTATCTTGACGTATATGATATGATATTCATGGCAAAGAG
ATACGCAAATCCTCTGTGATTCAACATCTTTTCAGGGGAGATTCGTTATCTCTTAGCGTAATCTTTGCGTTCGACAGGTCGTTCTAGAGCTTATTTTTATCATCATTGGCCCGCGGTTAAAGCTTTTATGATGTCCGGCTCATTTCAGGTCCAAGTTCGAGGCCACGACTTCCTGAGTTCCACTAGTAGGTTCAGTGGTG
ATAAAAATGAAAATATGCTTAGGCTTTTTGCGGGATGGAATGGTCAAAGGCGGGCTAGGTTTTTACTGTGGAGAGATGAAAGGAATGTGCTTCGTAACGGCCAGAAGTCTCGGATCTTATGCACAGTTGAGAGTGAGGTTGCTAGTGCTGGAATGTTGAGAGCTCATATTACTACAAGGTGTGCTTGAAGAAGCCTTGAT
TGGAATGCTTCAACCTGCCAGAACAGAGGGTCATCAAATTTAGAAAATATGCGCCATTGCTTGAGAACACATTTTTAGAGAAGAATGGTACCCATGTTTCAACTGAATGGAAGGCTGTCCCAGACATTTGGAAGACAGCAGCAGAGCAATATGGAGATCGAACTGCCTTGGTTGACCATCATCATGATCCACCTTCCCAG
ATGACTTACAAACAGCTCGAACAGAAAATTTTGGATTTTGTAGAAGGGCTACGTGCTGTTGGAATACTTCCAGATCAAAAAATTGCTCTATTTGCAGACAATTCATGTCGCTGGTTGGTTGCTGATCAAGGCATTATGGCAGCTGGAGCAATAAATGCAGTTCGTGGTTCCAGATCATCAGCGGAGGAGCTTTTGCAGAT
ATACATTCATTCTGACAGTGTTGCACTTGTCGTTGACAATCCAACTCTATTCAATAAGCTCGTGGCAAAGTTCAACTCATCTGCAACCTTAAAATTTGTTGTTCTTCTGTGGGGTGAGAAATCAATGATGGACTTAAGTATTGCTGGTGAAGTACCTGTGTACACTTATGATGAATTCACCCATTTGGGTCAAGAAAGCC
GGCAAGGTCTGCTTTCACACACAAAAGCAGGTCAAAGCTTCAAATCTGAGGCCATCGGAACAGATGATATTGCAACATTGGTATATACAAGTGGAACAACAGGGAATCCTAAAGGAGTCATGCTCACTCATGGAAATTTGCTGCATCAGATCATACACTTGGGTGAGGTTGTGCCTGCCATTGCTGGAAACAGATTTCTT
AGTCTTCTTCCACCATGGCATATGTATGAGCGTGCCGCTGAATATTTTACCCTCACTCGTGGGATTGAGCAAGTCTACACAAATGTGAACTACTTGAAGGAGGACCTGAAGAATTTTCCACCACACTATTTGGTTGCAGTGCCACTTGTTTATGAAATACTTTATAGTGGAATTCGAAAGCAGCTTTTAGCAAGTTCAGT
TGCAAAAAAGTTTATAGCATTTACCTTAATCAATATCAGTATGGTGTACATGGAATACAAGAGAATATATGAGGGTAAATCTTTAGCAAAGACAAAACAGCGACAATCAGTGTTAGTTGCTGCATCTGAGTGGCTTTGGGCTAGAACTTTTGCGGCATTATTTTGGCCATTCCACTTGTTAGGGAAGAAGCTCGTTTATA
GTAAGATTCGTTCAGCACTTGGAATAACAAAGGCAAGCATAAGTGGTGGGGGAAGCCTGCCATCCCACATTGACCGTTTTTTTGAGGCAATCGGCATAACATTGCTTAATGGATATGGTCTGACAGAATCATCTCCAGTTATATGTGCTCGTCGAGCAGAGTGTAATGTTCTGGGAACAGTTGGTGCACCCCTTCATGCT
ACAGAATTGAAAGTTGTCAATTCAGATACAGGGGAAATAGTTCCAGCTGGGTCAAAGGGTGTTGTCAAAGTTCGAGGACCTCAAATTATGAAAGGATATTACAAGAATCCTATTGCCACACAAAAAGTTCTTGACAAAGAGGGTTGGCTTGACACAGGCGATATAGGATGGCTTGTGCCTCAATCAACAATAGGTGGTGG
TCGTCATTGCGGAGGAATGCTTGTGCTTGAAGGTCGTGCAAAAGATACTATTGTACTTACTACTGGCGAAAATGTGGAACCAGCAGAAATAGAAGAAGCTGCAATGCGGAGTAATTTGATCCATCAAATTGTTGTTGTTGGTCAGGATCAGCGCCGGCTTGGTGCTTTAATTGTTCCAAACAAAGAAGAGCTGCACATGG
CCGCCAAAGCATTGAGGAAATCAAACAGTTTATCAGAACCAACAGTAGAAGTTTTCAATGATTTAATACGGCAGGAACTCAATAGATATACCTCACGGTGCTCATTTCAAATAGGACCTTTCTTACTGCTGGAGGAGCCTTTCACAATAGAAAGTGGTCTGTTGACACCAACATTAAAAATTCGCAGAGATATCGTGAGC
GCTCGATTTCATGATGAAATTACCAATCTTTTCAAATAAATCACGAGGGATGCTGAAAAGCATGCAACCCATTTGAATATAGTTTTGTACTATAAAAGTTCATTTCTTTTCCAATGAATGTACTCATTAACAAACAAATTTACATGCAAAATTCTAAAGCCTTCAAGTTCTTTTCCAATGAATGATCCATTATCCCATAA
ATATTATTTGTTTCTATAAAACATTTAATTACTTCCAA
>TRINITY_DN109441_c0_g1_i4 from sample A3 / Example unspliced isoform:GGGAAGGTAAGGAGATATTCATACCCAACAGTAATGATTTTCGGTGGGTGTCGGCAGCAAATCATAAATGACGTTGTAAAGCCACAGATAAGTGATAATCATGTTTGCAAACGAACGCTAATACTAGCCTCTCCCCTCCGCTTCATCCCGCCAGCGTCATTCTATCTTGACGTATATGATATGATATTCATGGCAAAGAG
ATACGCAAATCCTCTGTGATTCAACATCTTTTCAGGGGAGATTCGTTATCTCTTAGCGTAATCTTTGCGTTCGACAGGTCGTTCTAGAGCTTATTTTTATCATCATTGGCCCGCGGTTAAAGCTTTTATGATGTCCGGCTCATTTCAGGTCCAAGTTCGAGGCCACGACTTCCTGAGTTCCACTAGTAGGTTCAGTGGTG
ATAAAAATGAAAATATGCTTAGGCTTTTTGCGGGATGGAATGGTCAAAGGCGGGCTAGGTTTTTACTGTGGAGAGATGAAAGGAATGTGCTTCGTAACGGCCAGAAGTCTCGGATCTTATGCACAGTTGAGCCAGAACAGAGGGTCATCAAATTTAGAAAATATGCGCCATTGCTTGAGAACACATTTTTAGAGAAGAAT
GGTACCCATGTTTCAACTGAATGGAAGGCTGTCCCAGACATTTGGAAGACAGCAGCAGAGCAATATGGAGATCGAACTGCCTTGGTTGACCATCATCATGATCCACCTTCCCAGATGACTTACAAACAGCTCGAACAGAAAATTTTGGATTTTGTAGAAGGGCTACGTGCTGTTGGAATACTTCCAGATCAAAAAATTGC
TCTATTTGCAGACAATTCATGTCGCTGGTTGGTTGCTGATCAAGGCATTATGGCAGCTGGAGCAATAAATGCAGTTCGTGGTTCCAGATCATCAGCGGAGGAGCTTTTGCAGATATACATTCATTCTGACAGTGTTGCACTTGTCGTTGACAATCCAACTCTATTCAATAAGCTCGTGGCAAAGTTCAACTCATCTGCAA
CCTTAAAATTTGTTGTTCTTCTGTGGGGTGAGAAATCAATGATGGACTTAAGTATTGCTGGTGAAGTACCTGTGTACACTTATGATGAATTCACCCATTTGGGTCAAGAAAGCCGGCAAGGTCTGCTTTCACACACAAAAGCAGGTCAAAGCTTCAAATCTGAGGCCATCGGAACAGATGATATTGCAACATTGGTATAT
ACAAGTGGAACAACAGGGAATCCTAAAGGAGTCATGCTCACTCATGGAAATTTGCTGCATCAGATCATACACTTGGGTGAGGTTGTGCCTGCCATTGCTGGAAACAGATTTCTTAGTCTTCTTCCACCATGGCATATGTATGAGCGTGCCGCTGAATATTTTACCCTCACTCGTGGGATTGAGCAAGTCTACACAAATGT
GAACTACTTGAAGGAGGACCTGAAGAATTTTCCACCACACTATTTGGTTGCAGTGCCACTTGTTTATGAAATACTTTATAGTGGAATTCGAAAGCAGCTTTTAGCAAGTTCAGTTGCAAAAAAGTTTATAGCATTTACCTTAATCAATATCAGTATGGTGTACATGGAATACAAGAGAATATATGAGGGTAAATCTTTAG
CAAAGACAAAACAGCGACAATCAGTGTTAGTTGCTGCATCTGAGTGGCTTTGGGCTAGAACTTTTGCGGCATTATTTTGGCCATTCCACTTGTTAGGGAAGAAGCTCGTTTATAGTAAGATTCGTTCAGCACTTGGAATAACAAAGgttagtatgcataccaatattatatttgatattattgatgtaatcctattccaa
tagatagaactaacaagaggaaggagatgattatataatatatattgccataaactttaggatactagtaaattaatctagaacagaaaaatccacatatattgcatatttaagaatttcctgtacttttacagGCAAGCATAAGTGGTGGGGGAAGCCTGCCATCCCACATTGACCGTTTTTTTGAGGCAATCGGCATA
ACATTGCTTAATGGATATGGTCTGACAGAATCATCTCCAGTTATATGTGCTCGTCGAGCAGAGTGTAATGTTCTGGGAACAGTTGGTGCACCCCTTCATGCTACAGAATTGAAAGTTGTCAATTCAGATACAGGGGAAATAGTTCCAGCTGGGTCAAAGGGTGTTGTCAAAGTTCGAGGACCTCAAATTATGAAAGGATA
TTACAAGAATCCTATTGCCACACAAAAAGTTCTTGACAAAGAGGGTTGGCTTGACACAGGCGATATAGGATGGCTTGTGCCTCAATCAACAATAGGTGGTGGTCGTCATTGCGGAGGAATGCTTGTGCTTGAAGGTCGTGCAAAAGATACTATTGTACTTACTACTGGCGAAAATGTGGAACCAGCAGAAATAGAAGAAG
CTGCAATGCGGAGTAATTTGATCCATCAAATTGTTGTTGTTGGTCAGGATCAGCGCCGGCTTGGTGCTTTAATTGTTCCAAACAAAGAAGAGCTGCACATGGCCGCCAAAGCATTGAGGAAATCAAACAGTTTATCAGAACCAACAGTAGAAGTTTTCAATGATTTAATACGGCAGGAACTCAATAGATATACCTCACGG
TGCTCATTTCAAATAGGACCTTTCTTACTGCTGGAGGAGCCTTTCACAATAGAAAGTGGTCTGTTGACACCAACATTAAAAATTCGCAGAGATATCGTGAGCGCTCGATTTCATGATGAAATTACCAATCTTTTCAAATAAATCACGAGGGATGCTGAAAAGCATGCAACCCATTTGAATATAGTTTTGTACTATAAAAG
TTCATTTCTTTTCCAATGAATGTACTCATTAACAAACAAATTTACATGCAAAATTCTAAAGCCTTCAAGTTCTTTTCCAATGAATGATCCATTATCCCATAAATATTATTTGTTTCTATAAAACATTTAATTACTTCCAA
Intron 2 GTTCGCAGTT ... TGTTTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.67 | 26 | 13 | 10 |
| A2 | 45.45 | 12 | 11 | 9 |
| A3 | 23.08 | 30 | 12 | 6 |
| A4 | 23.53 | 13 | 6 | 2 |
| A5 | 44.44 | 5 | 2 | 6 |
| A6 | 21.43 | 11 | 2 | 4 |
| A7 | 19.44 | 29 | 8 | 6 |
| A8 | 30.77 | 9 | 5 | 3 |
| A9 | 24.05 | 30 | 8 | 11 |
| A10 | 33.33 | 9 | 4 | 5 |
>TRINITY_DN117500_c6_g1_i23 from sample A2 / Example spliced isoformGGAACTAGGGATAAAGCCAACAATGATGAGGGTTTCATCTCACTTTGCTTGCAGTGAAGGGTTTCCTCCATTTCAATTATTTATAAAGTCCTACTTAGAGGCAAGAAGAATTACACAATTAAGATGTGTGTTTATGAGTAGCATGCTTGAGAAGTGAACCAATGATGAATGGTCTCTGTTGAGGTTTTGATGATGCCTGA
TTATATAAATATGCTACTCAAATGTTGCAATTTTCAAATGTTACACCATCCAAAAAACACAGTTTTAGTATCACATTGTTGGAGTGCTAATCATTTTACTTAGCAACTTTAACGTCTGGATCATTCCTAACAGAGATGGTACTGTCAAAATTTCAGCTCGAACAGAAAATTTTGGATTTTGTAGAAGGGCTACGTGCTGT
TGGAATACTTCCAGATCAAAAAATTTATTTGCAGACAATTCATGTCGCTGGTTGGTTGCTGATCAAGGCATTATGGCAGCTGGAGCAATAAATGCAGTTCGTGGTTCCAGATCATCAGCGGAGGAGCTTTTGCAGATATACATTCATTCTGACAGTGTTGCACTTGTCGTTGACAATCCAACTCTATTCAATAAGCTCGT
GGCAAAGTTCAACTCATCTGCAACCTTAAAATTTGTTGTTCTTCTGTGGGGTGAGAAATCAATGATGGACTTAAGTATTGCTGGTGAAGTACCTGTGTACACTTATGATGAATTCACCCATTTGGGTCAAGAAAGCCGGCAAGGTCTGCTTTCACACACAAAAGCAGGTCAAAGCTTCAAATCTGAGGCCATCGGAACAG
ATGATATTGCAACATTGGTATATACAAGTGGAACAACAGGGAATCCTAAAGGAGTCATGCTCACTCATGGAAATTTGCTGCATCAGATCATACACTTGGGTGAGGTTGTGCCTGCCATTGCTGGAAACAGATTTCTTAGTCTTCTTCCACCATGGCATATGTATGAGCGTGCCGCTGAATATTTTACCCTCACTCGTGGG
ATTGAGCAAGTCTACACAAATGTGAACTACTTGAAGGAGGACCTGAAGAATTTTCCACCACACTATTTGGTTGCAGTGCCACTTGTTTATGAAATACTTTATAGTGGAATTCGAAAGCAGCTTTTAGCAAGTTCAGTTGCAAAAAAGTTTATAGCATTTACCTTAATCAATATCAGTATGGTGTACATGGAATACAAGAG
AATATATGAGGGTAAATCTTTAGCAAAGACAAAACAGCGACAATCAGTGTTAGTTGCTGCATCTGAGTGGCTTTGGGCTAGAACTTTTGCGGCATTATTTTGGCCATTCCACTTGTTAGGGAAGAAGCTCGTTTATAGTAAGATTCGTTCAGCACTTGGAATAACAAAGGCAAGCATAAGTGGTGGGGGAAGCCTGCCAT
CCCACATTGACCGTTTTTTTGAGGCAATCGGCATAACATTGCTTAATGGATATGGTCTGACAGAATCATCTCCAGTTATATGTGCTCGTCGAGCAGAGTGTAATGTTCTGGGAACAGTTGGTGCACCCCTTCATGCTACAGAATTGAAAGTTGTCAATTCAGATACAGGGGAAATAGTTCCAGCTGGGTCAAAGGGTGTT
GTCAAAGTTCGAGGACCTCAAATTATGAAAGGATATTACAAGAATCCTATTGCCACACAAAAAGTTCTTGACAAAGAGGGTTGGCTTGACACAGGCGATATAGGATGGCTTGTGCCTCAATCAACAATAGGTGGTGGTCGTCATTGCGGAGGAATGCTTGTGCTTGAAGGTCGTGCAAAAGATACTATTGTACTTACTAC
TGGCGAAAATGTGGAACCAGCAGAAATAGAAGAAGCTGCAATGCGGAGTAATTTGATCCATCAAATTGTTGTTGTTGGTCAGGATCAGCGCCGGCTTGGTGCTTTAATTGTTCCAAACAAAGAAGAGCTGCACATGGCCGCCAAAGCATTGAGGAAATCAAACAGTTTATCAGAACCAACAGTAGAAGTTTTCAATGATT
TAATACGGCAGGAACTCAATAGATATACCTCACGGTGCTCATTTCAAATAGGACCTTTCTTACTGCTGGAGGAGCCTTTCACAATAGAAAGTGGTCTGTTGACACCAACATTAAAAATTCGCAGAGATATCGTGAGCGCTCGATTTCATGATGAAATTACCAATCTTTTCAAATAAATCACGAGGGATGCTGAAAAGCAT
GCAACCCATTTGAATATAGTTTTGTACTATAAAAGTTCATTTCTTTTCCAATGAATGTACTCATTAACAAACAAATTTACATGCAAAATTCTAAAGCCTTCAAGTTCTTTTCCAATGAATGATCCATTATCCCATAAATATTATTTGTTTCTATAAAACATTTAATTACTTCC
>TRINITY_DN117500_c6_g1_i8 from sample A2 / Example unspliced isoform:AGATGGGAAGGTAAGGAGATATTCATACCCAACAGTAATGATTTTCGGTGGGTGTCGGCAGCAAATCATAAATGACGTTGTAAAGCCACAGATAAGTGATAATCATGTTTGCAAACGAACGCTAATACTAGCCTCTCCCCTCCGCTTCATCCCGCCAGCGTCATTCTATCTTGACGTATATGATATGATATTCATGGCAA
AGAGATACGCAAATCCTCTGTGATTCAACATCTTTTCAGGGGAGATTCGTTATCTCTTAGCGTAATCTTTGCGTTCGACAGGTCGTTCTAGAGCTTATTTTTATCATCATTGGCCCGCGGTTAAAGCTTTTATGATGTCCGGCTCATTTCAGGTCCAAGTTCGAGGCCACGACTTCCTGAGTTCCACTAGTAGGTTCAGT
GGTGATAAAAATGAAAATATGCTTAGGCTTTTTGCGGGATGGAATGGTCAAAGGCGGGCTAGGTTTTTACTGTGGAGAGATGAAAGGAATGTGCTTCGTAACGGCCAGAAGTCTCGGATCTTATGCACAGTTGAGCCAGAACAGAGGGTCATCAAATTTAGAAAATATGCGCCATTGCTTGAGAACACATTTTTAGAGAA
GAATGGTACCCATGTTTCAACTGAATGGAAGGCTGTCCCAGACATTTGGAAGACAGCAGCAGAGCAATATGGAGATCGAACTGCCTTGGTTGACCATCATCATGATCCACCTTCCCAGATGACTTACAAACAGCTCGAACAGAAAATTTTGGATTTTGTAGAAGGGCTACGTGCTGTTGGAATACTTCCAGATCAAAAAA
TTGCTCTATTTGCAGACAATTCATGTCGCTGGTTGGTTGCTGATCAAGGCATTATGGCAGCTGGAGCAATAAATGCAGTTCGTGGTTCCAGATCATCAGCGGAGGAGCTTTTGCAGATATACATTCATTCTGACAGTGTTGCACTTGTCGTTGACAATCCAACTCTATTCAATAAGCTCGTGGCAAAGTTCAACTCATCT
GCAACCTTAAAATTTGTTGTTCTTCTGTGGGGTGAGAAATCAATGATGGACTTAAGTATTGCTGGTGAAGTACCTGTGTACACTTATGATGAATTCACCCATTTGGGTCAAGAAAGCCGGCAAGGTCTGCTTTCACACACAAAAGCAGGTCAAAGCTTCAAATCTGAGGCCATCGGAACAGATGATATTGCAACATTGGT
ATATACAAGTGGAACAACAGGGAATCCTAAAGGAGTCATGCTCACTCATGGAAATTTGCTGCATCAGATCATACACTTGGGTGAGGTTGTGCCTGCCATTGCTGGAAACAGATTTCTTAGTCTTCTTCCACCATGGCATATGTATGAGCGTGCCGCTGAATATTTTACCCTCACTCGTGGGATTGAGCAAGTCTACACAA
ATGTGAACTACTTGAAGGAGGACCTGAAGAATTTTCCACCACACTATTTGGTTGCAGTGCCACTTGTTTATGAAATACTTTATAGTGGAATTCGAAAGCAGCTTTTAGCAAGTTCAGTTGCAAAAAAGTTTATAGCATTTACCTTAATCAATATCAGTATGGTGTACATGGAATACAAGAGAATATATGAGgttcgcagt
ttgactcttcagattttgtgccagatataaaaatatctattcttctatgagaactattttagggtcatacatatttactggagtgttaacatctcggtcaagtttttctatttatgtgaatttgatttccataaaatgtttgaaagGGTAAATCTTTAGCAAAGACAAAACAGCGACAATCAGTGTTAGTTGCTGCATCT
GAGTGGCTTTGGGCTAGAACTTTTGCGGCATTATTTTGGCCATTCCACTTGTTAGGGAAGAAGCTCGTTTATAGTAAGATTCGTTCAGCACTTGGAATAACAAAGGCAAGCATAAGTGGTGGGGGAAGCCTGCCATCCCACATTGACCGTTTTTTTGAGGCAATCGGCATAACATTGCTTAATGGATATGGTCTGACAGA
ATCATCTCCAGTTATATGTGCTCGTCGAGCAGAGTGTAATGTTCTGGGAACAGTTGGTGCACCCCTTCATGCTACAGAATTGAAAGTTGTCAATTCAGATACAGGGGAAATAGTTCCAGCTGGGTCAAAGGGTGTTGTCAAAGTTCGAGGACCTCAAATTATGAAAGGATATTACAAGAATCCTATTGCCACACAAAAAG
TTCTTGACAAAGAGGGTTGGCTTGACACAGGCGATATAGGATGGCTTGTGCCTCAATCAACAATAGGTGGTGGTCGTCATTGCGGAGGAATGCTTGTGCTTGAAGGTCGTGCAAAAGATACTATTGTACTTACTACTGGCGAAAATGTGGAACCAGCAGAAATAGAAGAAGCTGCAATGCGGAGTAATTTGATCCATCAA
ATTGTTGTTGTTGGTCAGGATCAGCGCCGGCTTGGTGCTTTAATTGTTCCAAACAAAGAAGAGCTGCACATGGCCGCCAAAGCATTGAGGAAATCAAACAGTTTATCAGAACCAACAGTAGAAGTTTTCAATGATTTAATACGGCAGGAACTCAATAGATATACCTCACGGTGCTCATTTCAAATAGGACCTTTCTTACT
GCTGGAGGAGCCTTTCACAATAGAAAGTGGTCTGTTGACACCAACATTAAAAATTCGCAGAGATATCGTGAGCGCTCGATTTCATGATGAAATTACCAATCTTTTCAAATAAATCACGAGGGATGCTGAAAAGCATGCAACCCATTTGAATATAGTTTTGTACTATAAAAGTTCATTTCTTTTCCAATGAATGTACTCAT
TAACAAACAAATTTACATGCAAAATTCTAAAGCCTTCAAGTTCTTTTCCAATGAATGATCCATTATCCCATAAATATTATTTGTTTCTATAAAACATTTAATTACTTCC
Intron 3 GTAATTTGAT ... TGTTGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.31 | 9 | 32 | 37 |
| A2 | 88.89 | 4 | 31 | 33 |
| A3 | 90.36 | 4 | 36 | 39 |
| A4 | 80.49 | 8 | 31 | 35 |
| A5 | 83.33 | 2 | 10 | 10 |
| A6 | 83.26 | 19 | 98 | 91 |
| A7 | 84.05 | 24 | 131 | 122 |
| A8 | 86.89 | 20 | 129 | 136 |
| A9 | 89.89 | 9 | 79 | 81 |
| A10 | 93.44 | 4 | 57 | 57 |
>TRINITY_DN36982_c0_g1_i1 from sample A8 / Example spliced isoformATAGAAGAAGCTGCAATGCGGAGATCAGCGCCGGCTTGGTGCTTTAATTGTTCCAAACAAAGAAGAGCTGCACATGGCCGCCAAAGCATTGAGGAAATCAAACAGTTTATCAGAACCAACAGTAGAAGTTTTCAATGATTTAATACGGCAGGAACTCAATAGATATACCTCACGGTGCTCATTTCAAATAGGACCTTTCT
TACTGCTGGAGGAGCCTTTCACAATAGAAAGTGGTCTGTTGACACCAACATTAAAAATTCGCAGAGATATCGTGAGCGCTCGATTTCATGATGAAATTACCAATCTTTTCAAATAAATCACGAGGGATGCTGAAAAGCATGCAACCCATTTGAATATAGTTTTGTACTATAAAAGTTCATTTCTTTTCCAATGAATGTAC
TCATTAACAAACAAATTTACATGCAAAATTCTAAAGCCTTCAAGTTCTTTTCCAATGAATGATCCATTATCCCATAAATATTATTTGTTTCTATAAAACATTTAATTACTTCCATATGCGAAGTTTAGGTATTTTTTAAAGGCACCTCATGATCTACTTCAGGAAATATTTTTCTAATTTATTTCCTACTTTAAGAAATT
CACTACTCTTAACATTCATTTCACTACTCCCTTAGTCAAATCGAAATCTTGTCATTTTCTTGGATATGCTCTGCTTCATTGTTAAAATAATTTTTCCTTCACCCTCCTTTAGGGCTTTCTTCCACG
>TRINITY_DN36982_c0_g1_i2 from sample A8 / Example unspliced isoform:ATTTTCGGTGGGTGTCGGCAGCAAATCATAAATGACGTTGTAAAGCCACAGATAAGTGATAATCATGTTTGCAAACGAACGCTAATACTAGCCTCTCCCCTCCGCTTCATCCCGCCAGCGTCATTCTATCTTGACGTATATGATATGATATTCATGGCAAAGAGATACGCAAATCCTCTGTGATTCAACATCTTTTCAGG
GGAGATTCGTTATCTCTTAGCGTAATCTTTGCGTTCGACAGGTCGTTCTAGAGCTTATTTTTATCATCATTGGCCCGCGGTTAAAGCTTTTATGATGTCCGGCTCATTTCAGGTCCAAGTTCGAGGCCACGACTTCCTGAGTTCCACTAGTAGGTTCAGTGGTGATAAAAATGAAAATATGCTTAGGCTTTTTGCGGGAT
GGAATGGTCAAAGGCGGGCTAGGTTTTTACTGTGGAGAGATGAAAGGAATGTGCTTCGTAACGGCCAGAAGTCTCGGATCTTATGCACAGTTGAGCCAGAACAGAGGGTCATCAAATTTAGAAAATATGCGCCATTGCTTGAGAACACATTTTTAGAGAAGAATGGTACCCATGTTTCAACTGAATGGAAGGCTGTCCCA
GACATTTGGAAGACAGCAGCAGAGCAATATGGAGATCGAACTGCCTTGGTTGACCATCATCATGATCCACCTTCCCAGATGACTTACAAACAGCTCGAACAGAAAATTTTGGATTTTGTAGAAGGGCTACGTGCTGTTGGAATACTTCCAGATCAAAAAATTGCTCTATTTGCAGACAATTCATGTCGCTGGTTGGTTGC
TGATCAAGGCATTATGGCAGCTGGAGCAATAAATGCAGTTCGTGGTTCCAGATCATCAGCGGAGGAGCTTTTGCAGATATACATTCATTCTGACAGTGTTGCACTTGTCGTTGACAATCCAACTCTATTCAATAAGCTCGTGGCAAAGTTCAACTCATCTGCAACCTTAAAATTTGTTGTTCTTCTGTGGGGTGAGAAAT
CAATGATGGACTTAAGTATTGCTGGTGAAGTACCTGTGTACACTTATGATGAATTCACCCATTTGGGTCAAGAAAGCCGGCAAGGTCTGCTTTCACACACAAAAGCAGGTCAAAGCTTCAAATCTGAGGCCATCGGAACAGATGATATTGCAACATTGGTATATACAAGTGGAACAACAGGGAATCCTAAAGGAGTCATG
CTCACTCATGGAAATTTGCTGCATCAGATCATACACTTGGGTGAGGTTGTGCCTGCCATTGCTGGAAACAGATTTCTTAGTCTTCTTCCACCATGGCATATGTATGAGCGTGCCGCTGAATATTTTACCCTCACTCGTGGGATTGAGCAAGTCTACACAAATGTGAACTACTTGAAGGAGGACCTGAAGAATTTTCCACC
ACACTATTTGGTTGCAGTGCCACTTGTTTATGAAATACTTTATAGTGGAATTCGAAAGCAGCTTTTAGCAAGTTCAGTTGCAAAAAAGTTTATAGCATTTACCTTAATCAATATCAGTATGGTGTACATGGAATACAAGAGAATATATGAGGGTAAATCTTTAGCAAAGACAAAACAGCGACAATCAGTGTTAGTTGCTG
CATCTGAGTGGCTTTGGGCTAGAACTTTTGCGGCATTATTTTGGCCATTCCACTTGTTAGGGAAGAAGCTCGTTTATAGTAAGATTCGTTCAGCACTTGGAATAACAAAGGCAAGCATAAGTGGTGGGGGAAGCCTGCCATCCCACATTGACCGTTTTTTTGAGGCAATCGGCATAACATTGCTTAATGGATATGGTCTG
ACAGAATCATCTCCAGTTATATGTGCTCGTCGAGCAGAGTGTAATGTTCTGGGAACAGTTGGTGCACCCCTTCATGCTACAGAATTGAAAGTTGTCAATTCAGATACAGGGGAAATAGTTCCAGCTGGGTCAAAGGGTGTTGTCAAAGTTCGAGGACCTCAAATTATGAAAGGATATTACAAGAATCCTATTGCCACACA
AAAAGTTCTTGACAAAGAGGGTTGGCTTGACACAGGCGATATAGGATGGCTTGTGCCTCAATCAACAATAGGTGGTGGTCGTCATTGCGGAGGAATGCTTGTGCTTGAAGGTCGTGCAAAAGATACTATTGTACTTACTACTGGCGAAAATGTGGAACCAGCAGAAATAGAAGAAGCTGCAATGCGGAgtaatttgatcc
atcaaattgttgttgttggtcagGATCAGCGCCGGCTTGGTGCTTTAATTGTTCCAAACAAAGAAGAGCTGCACATGGCCGCCAAAGCATTGAGGAAATCAAACAGTTTATCAGAACCAACAGTAGAAGTTTTCAATGATTTAATACGGCAGGAACTCAATAGATATACCTCACGGTGCTCATTTCAAATAGGACCTTTC
TTACTGCTGGAGGAGCCTTTCACAATAGAAAGTGGTCTGTTGACACCAACATTAAAAATTCGCAGAGATATCGTGAGCGCTCGATTTCATGATGAAATTACCAATCTTTTCAAATAAATCACGAGGGATGCTGAAAAGCATGCAACCCATTTGAATATAGTTTTGTACTATAAAAGTTCATTTCTTTTCCAATGAATGTA
CTCATTAACAAACAAATTTACATGCAAAATTCTAAAGCCTTCAAGTTCTTTTCCAATGAATGATCCATTATCCCATAAATATTATTTGTTTCTATAAAACATTTAATTACTTCCATATGCGAAGTTTAGGTATTTTTTAAAGGCACCTCATGATCTACTTCAGGAAATATTTTTCTAATTTATTTCCTACTTTAAGAAAT
TCACTACTCTTAACATTCATTTCACTACTCCCTTAGTCAAATCGAAATCTTGTCATTTTCTTGGATATGCTCTGCTTCATTGTTAAAATAATTTTTCCTTCACCCTCCTTTAGGGCTTTCTTCCACG