sp|Q058P4|PUB30_ARATH ----> U-box domain-containing protein 30
Intron 1 GTTCTTGTTC ... GCTTGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 6 | 14 | 22 |
| A2 | 46.34 | 11 | 8 | 11 |
| A3 | 63.64 | 4 | 5 | 9 |
| A4 | 66.67 | 9 | 17 | 19 |
| A5 | 46.34 | 11 | 15 | 4 |
| A6 | 68.42 | 3 | 4 | 9 |
| A7 | 38.46 | 16 | 12 | 8 |
| A8 | 55.56 | 2 | 2 | 3 |
| A9 | 72.73 | 3 | 10 | 6 |
| A10 | 61.29 | 6 | 14 | 5 |
>TRINITY_DN108213_c0_g1_i2 from sample A2 / Example spliced isoformCTGGTCTCGACCAAAACGCTTCCGCATTGATGAGGATAACGGGAAAATTCCCGTCGTAGGTGGTGGCCATCAATGTGCGTTATACACGGATTGGGGAAAAGGGAAACGGAAGACGGAATTGTGGTTGGATTTTTGTTTTGTTTATATTGCGGTATATAGTACGAGTAGCTTTCAGAGATCTCTGGGTATGAATGAAGGCA
TATACACAATGTGTATATACTCGGAGAATCAATGAATGAAGGCGAGGAGGAAAGGGGATAATTGGTTTTTGATGGTCGGTATTGTTGCTTTTGGGTGATGGGCGTATGATTGTTGTTGGGGTTTCCTTTTGTGGGGCCTTTGGGTGTTTTCTCTGTTGTGTGATGAGATGATGATTGATGGGCTTTTGACTGGAATGCAA
TGGAGTACATTGGAATGAAGCAGTTTCTATAAAACTGAGGTTTCAGTCTCAATCACAGATGCCATTTGGGGGCCTCCAGGGTGCGTGTGGAGGATTGAGCTTTCAGTGCTGGAGTGAGATTTTTGAGGTTTAGAATGAGCTCGATGAAGTGGGTTTCTGTTAGAGCTAGCATTGCGGAAACTCTGAGCCTTCAGGATAGA
ACCCCTGTTCTCTCCGAGATGCCTTCGTTTAAGATTTCAAGCTGGGAAAAGGACGAACACAAGCAGAACCAGGAAACAGATTTTGGTGGTGTTCAGGAAATTGATTTGGGTTTTGATCAAAAGATCAATGGGAAGAAGGATGGGATTCCGTTGAAACAGATGATTGAAGAGCTGGATTGCTCTGATGTGCCCTCTGTTTT
CATTTGCCCCATTTCTCTGGAACCTATGCAGGATCCTGTTACCCTTTGTACAGGCCAGACCTATGAAAGATCCAATATTTTGCAGTGGTTTTCAATAGGGCATCATTACATCTGTCCGACAACTATGCAGGAGCTCTGGGATGTCTCTCTTACTCCCAACACGACGCTCTCCCATCTCATCTACAAGTGGTTTTCGCAAA
GATATCTGATGCAGAAAAAACAGGCCGAAAATGTTCAGGAGAGAGTGAAGGAACTTCTGGAGAAGCTCAGGAAGGCTAAAGGGCAGACTAGAATAAAGGCTCTGTGTGCACTTAGGTTGATTGCACAAACAGATGAATCCGCAAGAAAGTGTATAGTCGATGAAGGAGGGGTGATGTTGCTGTCATCTCTGTTGGGTCCT
TTCACTTCTCATGCAGTTGGGACTGAAGCCATTGGTATTCTGGTTAGGCTTCCTTTGGATTCAGAAGGAAAAACAAGCCTCACAGAACCGGCAAAGATCTCTCTAATGGTAGACCTTCTGCACGAGGGTACCATGGAGACAAGAATAAATTCAGCAAAGCTCATTGAAACTCTGGTGGATATCGAAGATCTGAAGTCTGA
GAACGTTTCGAGTTTTAGGCTTCTATTCGGCTTGTTGAGGCTTGTGAAGGACAAGAAGTATCCAAGGGCCATGGCAGCAGGACTCAGTTTGCTTAGAATTATATGTTCTTGCAAGCAGGTGAGAAATCAGGTAGTGGGTATTGGATTAGTTGTACAGTTGGTCGAGCTTCTTCCTTATGCAACAATCCCCTGTTTAGAGA
CTGCCCTGGCGATTCTGGACATTCTTTCTACAACACCAGAGGGTAGGGCTGCTCTAAAGGACTGTGCTTGTACAATCCCTAATATAGTTAGAGTTTTGATGAGAGTTTCTGAAAATTACAAACAGCATGCCTTGTCAATTTTGTGGACTGTATGTAAATTGGCACCGGAAGAGTGTACCTCAACTGCAGTTGAAGCGGGG
ATAGCAGCAAAATTGCTTCTTGTCATACAGAGCAGTTGTAACCCTGTTGTTAAACAAAGATCAGCAGAACTCCTAAAACTCTGTAGCCTCAATTACACTGCCACAATCTTCATCTCCAAGTGCAAGCTCACCAGAACAATTCAGTAGCTTCAATAAATGAATTCGATAGAGCTATGTTGATTCGGAGGTTTTAGAGATAA
CATTCTCTGCTCTACATCTTGAATGAATCAAGTGGATATGGGTGATTCCAGTGCAGTCATCTGGCTAGTTATTCTTTTCTTTCGCTTTGTGTCTATTGCATGCAGAAATTAAATATCCAAATATCCAAGTATGGACGAAATGTCCAAGATTCAAAATAATTGAGGCTGCTGGGGACTTTACTATATACTGGTATTTTTCT
CTCCCACAGCTTGCATGGACAAATGTTTATTTCCGGCTGCAGAACTATGTACATGAGAGCAAGTTGTTGTTCCAGAGTGAACTCTTTTATTCCGACCAAATTCCAAAATAGGTTTTCCCCTTGCCTCAACACTCACTCTCATGGGAGCTGTATGGTCTGCTCTGGTTTGACATGGTGTGAGGAATGTAGTATTCCTTTAT
GTACAAAGCAACAAGCTGTATACATGTATGCAAGGTGAAAGATAATGGGAACATTTGCAGGCAATATCAATCCATATTCGTTGGTCAGTTTCTCATTGATCAAGTTAACGGATTATGATTCCCCTCCAAATGGACTTTTTGTGATCCATTGTTTCCACAATGATCTGCTTGTTATAGGCT
>TRINITY_DN108213_c0_g1_i1 from sample A2 / Example unspliced isoform:CTGGTCTCGACCAAAACGCTTCCGCATTGATGAGGATAACGGGAAAATTCCCGTCGTAGGTGGTGGCCATCAATGTGCGTTATACACGGATTGGGGAAAAGGGAAACGGAAGACGGAATTGTGGTTGGATTTTTGTTTTGTTTATATTGCGGTATATAGTACGAGTAGCTTTCAGAGATCTCTGGGTATGAATGAAGGCA
TATACACAATGTGTATATACTCGGAGAATCAATGAATGAAGGCGAGGAGGAAAGGGGATAATTGGTTTTTGATGGTCGGTATTGTTGCTTTTGGGTGATGGGCGTATGATTGTTGTTGGGGTTTCCTTTTGTGGGGCCTTTGGGTGTTTTCTCTGTTGTGTGATGAGATGATGATTGATGGGCTTTTGACTGGAATGCAA
TGGAGTACATTGGAATGAAGCAGTTTCTATAAAACTGAGGTTTCAGTCTCAATCACAGATGCCATTTGGGGGCCTCCAGgttcttgttcttattcttattctatctatcttttgcccttttttttttccttcttgaatgaaatctgtatattgggttgatgcatgagatggagttttcagtattctttgctttggaaccg
aggcccatctcgttgctagtcactctgtgtaatgttttctgtatgtgaggtcgggaaatctgaagcttgagcctacccagaggtttttatttttatgttttcggttctttcattgattgagtattgggcagaatgctctgcatttctgtctattgacgggaagttttggcttgagaagGGTGCGTGTGGAGGATTGAGCT
TTCAGTGCTGGAGTGAGATTTTTGAGGTTTAGAATGAGCTCGATGAAGTGGGTTTCTGTTAGAGCTAGCATTGCGGAAACTCTGAGCCTTCAGGATAGAACCCCTGTTCTCTCCGAGATGCCTTCGTTTAAGATTTCAAGCTGGGAAAAGGACGAACACAAGCAGAACCAGGAAACAGATTTTGGTGGTGTTCAGGAAAT
TGATTTGGGTTTTGATCAAAAGATCAATGGGAAGAAGGATGGGATTCCGTTGAAACAGATGATTGAAGAGCTGGATTGCTCTGATGTGCCCTCTGTTTTCATTTGCCCCATTTCTCTGGAACCTATGCAGGATCCTGTTACCCTTTGTACAGGCCAGACCTATGAAAGATCCAATATTTTGCAGTGGTTTTCAATAGGGC
ATCATTACATCTGTCCGACAACTATGCAGGAGCTCTGGGATGTCTCTCTTACTCCCAACACGACGCTCTCCCATCTCATCTACAAGTGGTTTTCGCAAAGATATCTGATGCAGAAAAAACAGGCCGAAAATGTTCAGGAGAGAGTGAAGGAACTTCTGGAGAAGCTCAGGAAGGCTAAAGGGCAGACTAGAATAAAGGCT
CTGTGTGCACTTAGGTTGATTGCACAAACAGATGAATCCGCAAGAAAGTGTATAGTCGATGAAGGAGGGGTGATGTTGCTGTCATCTCTGTTGGGTCCTTTCACTTCTCATGCAGTTGGGACTGAAGCCATTGGTATTCTGGTTAGGCTTCCTTTGGATTCAGAAGGAAAAACAAGCCTCACAGAACCGGCAAAGATCTC
TCTAATGGTAGACCTTCTGCACGAGGGTACCATGGAGACAAGAATAAATTCAGCAAAGCTCATTGAAACTCTGGTGGATATCGAAGATCTGAAGTCTGAGAACGTTTCGAGTTTTAGGCTTCTATTCGGCTTGTTGAGGCTTGTGAAGGACAAGAAGTATCCAAGGGCCATGGCAGCAGGACTCAGTTTGCTTAGAATTA
TATGTTCTTGCAAGCAGGTGAGAAATCAGGTAGTGGGTATTGGATTAGTTGTACAGTTGGTCGAGCTTCTTCCTTATGCAACAATCCCCTGTTTAGAGACTGCCCTGGCGATTCTGGACATTCTTTCTACAACACCAGAGGGTAGGGCTGCTCTAAAGGACTGTGCTTGTACAATCCCTAATATAGTTAGAGTTTTGATG
AGAGTTTCTGAAAATTACAAACAGCATGCCTTGTCAATTTTGTGGACTGTATGTAAATTGGCACCGGAAGAGTGTACCTCAACTGCAGTTGAAGCGGGGATAGCAGCAAAATTGCTTCTTGTCATACAGAGCAGTTGTAACCCTGTTGTTAAACAAAGATCAGCAGAACTCCTAAAACTCTGTAGCCTCAATTACACTGC
CACAATCTTCATCTCCAAGTGCAAGCTCACCAGAACAATTCAGTAGCTTCAATAAATGAATTCGATAGAGCTATGTTGATTCGGAGGTTTTAGAGATAACATTCTCTGCTCTACATCTTGAATGAATCAAGTGGATATGGGTGATTCCAGTGCAGTCATCTGGCTAGTTATTCTTTTCTTTCGCTTTGTGTCTATTGCAT
GCAGAAATTAAATATCCAAATATCCAAGTATGGACGAAATGTCCAAGATTCAAAATAATTGAGGCTGCTGGGGACTTTACTATATACTGGTATTTTTCTCTCCCACAGCTTGCATGGACAAATGTTTATTTCCGGCTGCAGAACTATGTACATGAGAGCAAGTTGTTGTTCCAGAGTGAACTCTTTTATTCCGACCAAAT
TCCAAAATAGGTTTTCCCCTTGCCTCAACACTCACTCTCATGGGAGCTGTATGGTCTGCTCTGGTTTGACATGGTGTGAGGAATGTAGTATTCCTTTATGTACAAAGCAACAAGCTGTATACATGTATGCAAGGTGAAAGATAATGGGAACATTTGCAGGCAATATCAATCCATATTCGTTGGTCAGTTTCTCATTGATC
AAGTTAACGGATTATGATTCCCCTCCAAATGGACTTTTTGTGATCCATTGTTTCCACAATGATCTGCTTGTTATAGGCT
Intron 2 GTTCTTGTTC ... GCTTGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 6 | 14 | 22 |
| A2 | 46.34 | 11 | 8 | 11 |
| A3 | 63.64 | 4 | 5 | 9 |
| A4 | 66.67 | 9 | 17 | 19 |
| A5 | 46.34 | 11 | 15 | 4 |
| A6 | 68.42 | 3 | 4 | 9 |
| A7 | 38.46 | 16 | 12 | 8 |
| A8 | 55.56 | 2 | 2 | 3 |
| A9 | 72.73 | 3 | 10 | 6 |
| A10 | 61.29 | 6 | 14 | 5 |
>TRINITY_DN43902_c0_g1_i1 from sample A10 / Example spliced isoformGTTGGATTTTTGTTTTGTTTATATTGCGGTATATAGTACGAGTAGCTTTCAGAGATCTCTGGGTATGAATGAAGGCATATACACAATGTGTATATACTCGTAGAATCAATGAATGAAGGCGAGGAGGAAAGGGGATAATTGGTTTTTGATGGTCGGTATTGTTGCTTTTGGGTGATGGGCGTATGATTGTTGTTGGGGTT
TCCTTTTGTGGGGCCTTTGGGTGTTTTCTCTGTTGTGTGATGAGATGATGATTGATGGGCTTTTGACTGGAATGCAATGGAGTACATTGGAATGAAGCAGTTTCTATAAAACTGAGGTTTCAGTCTCAATCACAGATGCCATTTGGGGGCCTCCAGGGTGCGTGTGGAGGATTGAGCTTTCAGTGCTGGAGTGAGATTTT
TGAGGTTTAGAATGAGCTCGATGAAGTGGGTTTCTGTTAGAGCTAGCATTGCGGAAACTCTGAGCCTTCAGGATAGAACCCCTGTTCTCTCCGAGATGCCTTCGTTTAAGATTTCAAGCTGGGAAAAGGACGAACACAAGCAGAACCAGGAAACAGATTTTGGTGGTGTTCAGGAAATTGATTTGGGTTTTGATCAAAAG
ATCAATGGGAAGAAGGATGGGATTCCGTTGAAACAGATGATTGAAGAGCTGGATTGCTCTGATGTGCCCTCTGTTTTCATTTGCCCCATTTCTCTGGAACCTATGCAGGATCCTGTTACCCTTTGTACAGGCCAGACCTATGAAAGATCCAATATTTTGCAGTGGTTTTCAATAGGGCATCATTACATCTGTCCGACAAC
TATGCAGGAGCTCTGGGATGTCTCTCTTACTCCCAACACGACCCTCTCCCATCTCATCTACAAGTGGTTTTCGCAAAGATATCTGATGCAGAAAAAACAGGCCGAAAATGTTCAGGAGAGAGTGAAGGAACTTCTGGAGAAGCTCAGGAAGGCTAAAGGGCAGACTAGAATAAAGGCTCTGTGTGCACTTAGGTTGATTG
CACAAACAGATGAATCCGCAAGAAAGTGTATAGTCGATGAAGGAGGGGTGATGTTGCTGTCATCTCTGTTGGGTCCTTTCACTTCTCATGCAGTTGGGACTGAAGCCATTGGTATTCTGGTTAGGCTTCCTTTGGATTCAGAAGGAAAAACAAGCCTCACAGAACCGGCAAAGATCTCTCTAATGGTAGACCTTCTGCAC
GAGGGTACCATGGAGACAAGAATAAATTCAGCAAAGCTCATTGAAACTCTGGTGGATATCGAAGATCTGAAGTCTGAGAACGTTTCGAGTTTTAGGCTTCTATTCGGCTTGTTGAGGCTTGTGAAGGACAAGAAGTATCCAAGGGCCATGGCAGCAGGACTCAGTTTGCTTAGAATTATATGTTCTTGCAAGCAGGTGAG
AAATCAGGTAGTGGGTATTGGATTAGTTGTACAGTTGGTCGAGCTTCTTCCTTATGCAACAATCCCCTGTTTAGAGACTGCCCTGGCGATTCTGGACATTCTTTCTACAACACCAGAGGGTAGGGCTGCTCTAAAGGACTGTGCTTGTACAATCCCTAATATAGTTAGAGTTTTGATGAGAGTTTCTGAAAATTACAAAC
AGCATGCCTTGTCAATTTTGTGGACTGTATGTAAATTGGCACCGGAAGAGTGTACCTCAACTGCAGTTGAAGCGGGGATAGCAGCAAAATTGCTTCTTGTCATACAGAGCAGTTGTAACCCTGTTGTTAAACAAAGATCAGCAGAACTCCTAAAACTCTGTAGCCTCAATTACACTGCCACAATCTTCATCTCCAAGTGC
AAGCTCACCAGAACAATTCAGTAGCTTCAATAAATGAATTCGATAGAGCTATGTTGATTCGGAGGTTTTAGAGATAACATTTTCTGCTCTACATCTTGAATGAATCAAGTGGATATGGGTGATTCCAGTGCAGTCATCTGGCTAGTTATTCTTTTCTTTCGCTTTGTGTCTATTGCATGCAGAAATTAAATATCCAAATA
TCCAAGTATGGACGAAATGTCCAAGATTCAAAATAATTGAGGCTGCTGGGGACTTTACTATATACTGGTATTTTTCTCTCCCACAGCTTGCATGGACAAATGTTTATTTCCGGCTGCAGAACTATGTACATGAGAGCAAGTTGTTGTTCCAGAGTGAACTCTTTTATTCCGACCAAATTCCAAAATAGGTTTTCCCCTTG
CCTCAACACTCACTCTCATGGGAGCTGTATGGTCTGCTCTGGTTTGACATGGTGTGAGGAATGTAGTATTCCTTTATGTACAAAGCAACAAGCTGTATACATGTATGCAAGGTGAAAGATAATGGGAACATTTGCAGGCAATATCAATCCATATTCGTTGGTCAGTTTCTCATTGATCAAGTTAACGGATTATGATTCCC
CTCCAAATGGACTTTTTGTGATCCATTGTTTCCACAATGATCTGCTTGTTAT
>TRINITY_DN43902_c0_g1_i2 from sample A10 / Example unspliced isoform:GTTGGATTTTTGTTTTGTTTATATTGCGGTATATAGTACGAGTAGCTTTCAGAGATCTCTGGGTATGAATGAAGGCATATACACAATGTGTATATACTCGTAGAATCAATGAATGAAGGCGAGGAGGAAAGGGGATAATTGGTTTTTGATGGTCGGTATTGTTGCTTTTGGGTGATGGGCGTATGATTGTTGTTGGGGTT
TCCTTTTGTGGGGCCTTTGGGTGTTTTCTCTGTTGTGTGATGAGATGATGATTGATGGGCTTTTGACTGGAATGCAATGGAGTACATTGGAATGAAGCAGTTTCTATAAAACTGAGGTTTCAGTCTCAATCACAGATGCCATTTGGGGGCCTCCAGgttcttgttcttattcttattctatctatcttttgccctttttt
tttccttcttgaatgaaatctgtatattgggttgatgcatgagatggagttttcagtattctttgctttggaaccgaggcccatctcgttgctagtcactctgtgtaatgttttctgtatgtgaggtcgggaaatctgaagcttgagcctacccagaggtttttatttttatgttttcggttctttcattgattgagtat
tgggcagaatgctctgcatttctgtctattgacgggaagttttggcttgagaagGGTGCGTGTGGAGGATTGAGCTTTCAGTGCTGGAGTGAGATTTTTGAGGTTTAGAATGAGCTCGATGAAGTGGGTTTCTGTTAGAGCTAGCATTGCGGAAACTCTGAGCCTTCAGGATAGAACCCCTGTTCTCTCCGAGATGCCTT
CGTTTAAGATTTCAAGCTGGGAAAAGGACGAACACAAGCAGAACCAGGAAACAGATTTTGGTGGTGTTCAGGAAATTGATTTGGGTTTTGATCAAAAGATCAATGGGAAGAAGGATGGGATTCCGTTGAAACAGATGATTGAAGAGCTGGATTGCTCTGATGTGCCCTCTGTTTTCATTTGCCCCATTTCTCTGGAACCT
ATGCAGGATCCTGTTACCCTTTGTACAGGCCAGACCTATGAAAGATCCAATATTTTGCAGTGGTTTTCAATAGGGCATCATTACATCTGTCCGACAACTATGCAGGAGCTCTGGGATGTCTCTCTTACTCCCAACACGACCCTCTCCCATCTCATCTACAAGTGGTTTTCGCAAAGATATCTGATGCAGAAAAAACAGGC
CGAAAATGTTCAGGAGAGAGTGAAGGAACTTCTGGAGAAGCTCAGGAAGGCTAAAGGGCAGACTAGAATAAAGGCTCTGTGTGCACTTAGGTTGATTGCACAAACAGATGAATCCGCAAGAAAGTGTATAGTCGATGAAGGAGGGGTGATGTTGCTGTCATCTCTGTTGGGTCCTTTCACTTCTCATGCAGTTGGGACTG
AAGCCATTGGTATTCTGGTTAGGCTTCCTTTGGATTCAGAAGGAAAAACAAGCCTCACAGAACCGGCAAAGATCTCTCTAATGGTAGACCTTCTGCACGAGGGTACCATGGAGACAAGAATAAATTCAGCAAAGCTCATTGAAACTCTGGTGGATATCGAAGATCTGAAGTCTGAGAACGTTTCGAGTTTTAGGCTTCTA
TTCGGCTTGTTGAGGCTTGTGAAGGACAAGAAGTATCCAAGGGCCATGGCAGCAGGACTCAGTTTGCTTAGAATTATATGTTCTTGCAAGCAGGTGAGAAATCAGGTAGTGGGTATTGGATTAGTTGTACAGTTGGTCGAGCTTCTTCCTTATGCAACAATCCCCTGTTTAGAGACTGCCCTGGCGATTCTGGACATTCT
TTCTACAACACCAGAGGGTAGGGCTGCTCTAAAGGACTGTGCTTGTACAATCCCTAATATAGTTAGAGTTTTGATGAGAGTTTCTGAAAATTACAAACAGCATGCCTTGTCAATTTTGTGGACTGTATGTAAATTGGCACCGGAAGAGTGTACCTCAACTGCAGTTGAAGCGGGGATAGCAGCAAAATTGCTTCTTGTCA
TACAGAGCAGTTGTAACCCTGTTGTTAAACAAAGATCAGCAGAACTCCTAAAACTCTGTAGCCTCAATTACACTGCCACAATCTTCATCTCCAAGTGCAAGCTCACCAGAACAATTCAGTAGCTTCAATAAATGAATTCGATAGAGCTATGTTGATTCGGAGGTTTTAGAGATAACATTTTCTGCTCTACATCTTGAATG
AATCAAGTGGATATGGGTGATTCCAGTGCAGTCATCTGGCTAGTTATTCTTTTCTTTCGCTTTGTGTCTATTGCATGCAGAAATTAAATATCCAAATATCCAAGTATGGACGAAATGTCCAAGATTCAAAATAATTGAGGCTGCTGGGGACTTTACTATATACTGGTATTTTTCTCTCCCACAGCTTGCATGGACAAATG
TTTATTTCCGGCTGCAGAACTATGTACATGAGAGCAAGTTGTTGTTCCAGAGTGAACTCTTTTATTCCGACCAAATTCCAAAATAGGTTTTCCCCTTGCCTCAACACTCACTCTCATGGGAGCTGTATGGTCTGCTCTGGTTTGACATGGTGTGAGGAATGTAGTATTCCTTTATGTACAAAGCAACAAGCTGTATACAT
GTATGCAAGGTGAAAGATAATGGGAACATTTGCAGGCAATATCAATCCATATTCGTTGGTCAGTTTCTCATTGATCAAGTTAACGGATTATGATTCCCCTCCAAATGGACTTTTTGTGATCCATTGTTTCCACAATGATCTGCTTGTTAT