sp|F4KIX0|JMJ13_ARATH ----> Lysine-specific demethylase JMJ13
Intron 1 GTATTCAAAA ... TGTGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.21 | 660 | 161 | 216 |
| A2 | 23.4 | 455 | 94 | 184 |
| A3 | 22.96 | 483 | 96 | 192 |
| A4 | 21.58 | 421.5 | 93 | 139 |
| A5 | 22.39 | 175 | 28 | 73 |
| A6 | 24.71 | 32 | 7 | 14 |
| A7 | 24.48 | 162 | 41 | 64 |
| A8 | 26.85 | 79 | 11 | 47 |
| A9 | 24.29 | 159 | 38 | 64 |
| A10 | 22.17 | 165 | 30 | 64 |
>TRINITY_DN130079_c2_g1_i1 from sample A1 / Example spliced isoformCGGGAAAGAGGGCAGCGGTTCGAATCTCGGCGGGTGGAGTTTCCCGGCGGGTGAACGAACTGCTACAGATTTTTATTGATTCTTCCTTTTACTTACCTACCCGCCTCCCATCCTCCTTATCTCGTTTTATTATTTAACATTCCTCTGCTTCTATTCCGCGTTTTCTTTCACGTCTCCTTCCTTCCTCGCGCGATCCGGAG
CTCTCAGGAGAAATTCGATCGATCTCACGACCTCTGAGAGTTAGCGGATCCGGCGGGCGAGGAATTGGCGTTGCCGACGGGGGAGAATTTGAGGACGAGAAGAAAATTTTGCGGTTTATTTCGGTTTTTCCGCAGTCGATTTGTACGGGCAATTTTAGCGGGATGAACGACGAAGGGTAGACCGAGCAGAATGGTGGTGC
TTCGGGTCACCTCGCCGTCGCAAAATGGTGAAGGGAAGACTTCGTTTGAATGGAGAGGATAAAACTGGGTTAGAAGCGCTTGGCAGGAAAAAGATCCCAAAGAAGTCAGAAGCACTTCATGGAGCAGATATAAATACTTATACCATGGCTAGGAGTGGAGGAGATGCACTACGGATTCGGGAATCGCGAAGGGTATTATT
TCCTGAGAGGGGGGAAAAGTTTGCACAATGCAAAGAAACTTCAGAAGTTAGGGCCGATTTCACAAAATGCAAGGTTGATAAGTTTGATACAAGTAAATCATGCTGGATAGATAATATTCCTTTCTGTCCAGTATTTTCTCCTACAAAGGAGGAATTTGAAGATCCTTTGACATATATTCAGAGTATTGCGCCAGTTGCAT
CAAAATATGGGATCTGCAAGATCATCTCTCCCTTGGTTGCCTCAGTAACTGCAGGCATGGTTCTGATGAAGGAGAAGCCAGGATTTAAGTTTACAACTCGGGTGCAGCCTTTGAGACTTGCTAACTGGGATTCTGAAGATAGAGTTACATTCCTTATGAGTGGAAGACATTATTCCTTACGTGATTATGAGAGGATAGCA
AATAAGATATTTACTAAGAAATTTTCAAGTGCTGGCAATCTGCCTGCTAAGTTTGTTGAAGAGGAGTTTTGGCATGAGATATCTTCTGGCAAGACCACAACTGTTGAATATGCTTGTGATATTGAAGGCAGTGCTTTCTCGTCATCAGAAAATGATCCACTTGGAACTAGCAAGTCAAACTTAAAGCATCTTTCAAGACT
CCCAAACTCCACCTTACGCCTTCTCGAGACTGCTATTCCGGGAGTAACAGATCCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTTGAAGATCATTCCTTGTATAGCATTAATTATCATCATTGTGGGGCACCCAAGACTTGGTATGGTGTTCCTGGTCATTCTGCTCCTGACTTTGAAAAGGTAG
TCCGGGAGCATGTTTATGATAAGGAAATACTCTTAAATGAAGGTGAAGATGCAGCATATGATTTGCTTATAGGGAAGACGACAATGTTTCCTCCAAAGATTTTATCTGAGCAGAGAGTCCCTGTTTATAAAGCTGTGCAAAAACCTGGCGAGTTTGTTATCACTTTTCCTCGAGCTTATCATGCAGGTTTTAGTCATGGA
TTCAACTGTGGAGAAGCTGTGAACTTTGCAACAATTGATTGGTTTCCAATGGGTGCATTGGCATGCAAACGTTATGAGCTTCTCAACAGGATGCCACTTCTCCCGCATGAGGAACTGCTTTGTAAAGAAGCAATGCTGCTTTCCAAGAAGACATCTAGCTTCAGTAGTGAAGCAGAAAATAAATCATCTGTAAATTCAGT
AGGAGAGCAGTACTTAAAGGTTGCATTTGTGCGCCTGATGAGATTTCAACACCTTGTGCGCTGGTCACTGAAGAATCTAGGAGTACAATCAACCTTTTTAACGGGACACCCAAGCACATTCATTTGCAATCTTTGCAAACATTCATGTTATGTGGCATTCATTACATGTGAATGCCATTTTCAACCCATATGCCTTAATC
ACGCAACACAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTTATAAGAGAAAATCTGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTGGAACAGCGGCCACTTAGTTTTGATAAACATGATGGATATATT
CCATATTGTGATATACATTCCAGTGATAAACATGGAGAAGAACTCAATAGATCAATATCTGAGGAACATGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTC
AGCTGGAGCTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTTTTATTCTTTCTGTTAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGGGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGGTAGCGGAAGCTTTCTTGCTTGCAACAAATCTACTTCAAAGGAGT
TATTTCAGGACCATGCTGCCTCTAAAACAAGTAATACTGGTGATCAAAGTGAAAATGATTCTGATTCTGAGGCATTTATTGTGAAAAGACGGCGCATAGTAACTCAGAAGGGAATCTTGGTGCAAAGTATCACAAATTTGGAAAACACTAAACAATATTTGGCTGGGACATCTGCCACTAAATGTATCGTTCCCAAGAGT
GCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTGATGGTCACCGTGTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGGTCTTGAATGGGTGGCAGTCAAAGGGTATCTCTAGAGGGTTGGATTTGAAGGCTCATCGAGTTGATATTCAGTGCAC
TGCTAGTATTGATATGATTAAGGACTATGCATGTTGGGGATTATCATGTCAGGGTTGCATATCGCTAAAGCAAATTTTGCCAAAAGCAGAAGCTTGCAAACTAGAGCAATTGGTAGAAAGTGTATTTGGCAAGTCAGCGTCAACCATAAATTCTGCAGTTTTTGCTGAAAAATTTAAAGACACCAGTAGCATAAGCAGCA
AAAAAGGAGCTTATGATACAATGAACGAGGCTAATGATTCTGAGATTACTAAGAGCTCAGGTGCCAAATATAATACTGGCACACTGAAGGCATCCTTGAAATATAATTGCTTTTCAGAAATAAAAAATGGAAACAATCATGGCAAAGAGTCCTATGTGAGAGGGTCCCAAGAAGTTGAATATTATGATAACAAGCAAGAT
AATGAATATAACCAAAAAACAAATCAAGCACACTCACTGTCTTTTGTTAATCCGCAAGAGCAGAGCGCAATATGCAAGCCAGTTTCAAAGCACTCACCCAAAATAGCCTGTCATGCAAATCAAGAAATTACCACACAAGTTGAAGGTTCTTTTAGGAAAGGAACTTGTGACCATTCTGGTATAGAGACTAACAAAACAGT
ACCCAGGGTTAGTCGATTGAAAGTAAAAGGTCCATCTCTTCCTGGCAGTTCTAAAACTCTTTCTTCAGTAGAAAGTGAAGTCCATCACACTAATACTGGTTTTGACATTATCCAAGCTGCCAATTCGTCCAGCAATAATATAACTTCATTACCAAAGAGTAACCCTTCTATGGAAGATAAAGGCCTGCAGATATCAACTC
AGGATTACGTCATTTGCAGTGACAGCCAGTCACCCATGCAAGGATATCTTGATATGAATAAGAGCAAGCTGAAGAAGGGAAATGAAGAGCCAAGGAAATTAAGGAGTATAAACAATTTGTCGGTAGATTTTAAGTCAGAGGCAACTTCAAATGTACCACAATATTTGACATTTGACAATGTAGGAAAAGAAAAGTCTTTT
CAGAATCTGCAGGGTGTAATTCATCAGGAGGGACCAACTGAGACAATTTTGAAATCAGTAAGAGATTCTCATTCTAAAGTTTTGGGTCCCACTTCCAGTAAAGGTGTCCACAATGGTCAGAACATTTTGAATAACTGCCATTCAACTCTTGAAAGGGAATGCAGCACTGCTCATTCAGGCGACTCTGGCACACTTCTCAG
AATACCCTCCGGAGTAATAGTCCCTACAGGTCCTTGTGGCATTCAGAATAGCAGCACAGGTTTTGTAAGTAGTGAAAATGTTACAAATAAACAGGTTGCTCCAATGGCAGACCTTGTTGATGACTCTAACATAGAAATTGGCCTAAGAAGAAATGATGGTCTTCAAAATCAAGCAAATATGTCAAGATCTGAACACAATG
CTGAGAGACCTGCCGTTGAGAAACTGCCCAAAAGAATGGGATCTCCAGATAAACTGTTCACAGAGGTCTCTCATCATAGTTTTTGCAATATTGAAGATTCAATGAAAAGTCCACTTATTGATTTCCCCGAAGACTTGCTCGAAAGCAAGGACAGTATGAAGCAACAGAATAGTTTTATCCAGTCAAGGCATGACTGCTAC
TTGTCTCAGATCAATGAGCAAGAAGTTTCTTCTAGATCTAGGGATTTAAATGATGATGTAGGTTTGGGTCAGCAATCCAGATCATGCAGAAACAGTTTAAGAGATGCGACTCAGGTGGCACCTGATGAAGGCCAGAATTCATGTGGAAGATCTGAAAACAACATTGGTGAAAGATTTGCTTTAAGTACCGGACCTATAAC
CAATAACAAGGTTTCATTTTGCAATAGTTTAGATGTACTACATCAGACTGAATCGGTGGGAAGTTTCCTTTCATGGCACACAAATCTTATCAGTTTGTCTGGAAAAGCAGGGGATATTAACTCAAAAGGCAGGGGAGGAAGCTTTGTGCTATTCAATGAAGACAAAAGCAGCTCCCATACCAATCACTTGGTTCATCATT
CGAATCTGGATTGCACCAAGGAAATAAAGGGACCAAATGAAGTCATTGATGATGACCATCCCTTACAGATGCGTTCTGCCCAAGGCTATCATCCACATCAAAGAGACGATTTCCAGACATATGCGAATAGAAAGGAAGAAAAGGTGGACTATACTTATCTGAATGATTTACCCCAGGGCAGAGACAATGTTCAAGCTTCC
GAGGCTGGCGAAACTTCAAATGATTCTCAAACCAATTCTGCATTCAGGAACAAGTCGGAATGCATTCAGAATCGGATTCTCATTGAAAAGGATGATTGCCGATTCTAGTCAAGCTTGCATCAGAAAGGTATGTTAACAGGGAAATCTTATGGTGTACTAAGAGTTAATTCAAGGGTCTACAGTTCTTGAAATCGCAAAAG
AGCCCATTTTGTATTGGGATTTGGCCAAGCAATCACACACGAGGAAGGAAATAAAACCATCTTCACTGGAAGCTGAAACCCAGCATTCTGTTTAGCAGTATAGTATTTGTAGGTGGCAATGGCATGATCTTACTCCAATAAATGGTGAATAAAAAATGCAAGAGGCATACATATCAAAGCAGTGTTATTGTTAACATAGC
AACCAAGTGAAGTCACCCGACCAAAGTCTACCAATTGATTGGTGGGTGAGTTCTGGAAACATGTTACTGGTTGGCTTTAATGAGATTAGCTTGAACGCCAGATTCAGGTTTAATTTCCATAGATCAACTTGTTTAGTCAGGTCACAGTCTGAGATTGCGATTCACTCTACAAACGGTTTGCATTCCTAACTTCAATCCGC
AAACAGTTTCTCATGGACTATTAGCAGTGCCATCAGAGGTAACATTATCTCATGAGCACTGTCTTGAGCTAACGAATTTAGAAGCAGGACCATAACATTTGATTTCGGGCGGTTCAAGATAGTAGTAAATGCAATGGGCCAGTTTGTACAATATTGTCAATTGCTTCTTTCATTTGTATTGACAGGCGGCATTTCCCTGT
CTATTGTATTTCTGCCTGCATTTTTAGGTCATTCTTGGGGTCAAATTCTTTATTCTTTTACACTGCTGCAGCACTTGGATGTGAATAATTACAGTGATGTAAATCACGTGAGAGAGCTGGCAGCCTGTATTCATCCTGGCAGTGAGGCTAAACAAAATTGGAGCAAAGCTTTACTGTCTCTTCAAGCTTTTCTTTTAGCA
CTTAAATTCTGGAATTGGAGATCCCCATATTCATTAACAAGATTCTTGTAGAATTGGCCCTTGGATATTATTAGTGAATTTTCTTGACTAGAGGTAAATTTCATGGGTATTTGCCAAATAATGTTTCGTATATTGCAGGTTGTTTTGCATTAGTTTGGCTATTAAATGTTCCCTTCTGATAATGTCGCAGACATGCTAAT
AGATTATGATTTCCTTGCCATCATGAAGTTTCTTTCTTTAAAGGTCTCAGAATATAACGGTGAAATAAGATCTTTCATTCCACTAAGCCTTGAATAATATTATCTACAAGATAAGTTGGTGCTATTTTCCTTGCCCC
>TRINITY_DN130079_c2_g1_i3 from sample A1 / Example unspliced isoform:CGGGAAAGAGGGCAGCGGTTCGAATCTCGGCGGGTGGAGTTTCCCGGCGGGTGAACGAACTGCTACAGATTTTTATTGATTCTTCCTTTTACTTACCTACCCGCCTCCCATCCTCCTTATCTCGTTTTATTATTTAACATTCCTCTGCTTCTATTCCGCGTTTTCTTTCACGTCTCCTTCCTTCCTCGCGCGATCCGGAG
CTCTCAGGAGAAATTCGATCGATCTCACGACCTCTGAGAGTTAGCGGATCCGGCGGGCGAGGAATTGGCGTTGCCGACGGGGGAGAATTTGAGGACGAGAAGAAAATTTTGCGGTTTATTTCGGTTTTTCCGCAGTCGATTTGTACGGGCAATTTTAGCGGGATGAACGACGAAGGGTAGACCGAGCAGAATGGTGGTGC
TTCGGGTCACCTCGCCGTCGCAAAATGGTGAAGGGAAGACTTCGTTTGAATGGAGAGGATAAAACTGGGTTAGAAGCGCTTGGCAGGAAAAAGATCCCAAAGAAGTCAGAAGCACTTCATGGAGCAGATATAAATACTTATACCATGGCTAGGAGTGGAGGAGATGCACTACGGATTCGGGAATCGCGAAGGGTATTATT
TCCTGAGAGGGGGGAAAAGTTTGCACAATGCAAAGAAACTTCAGAAGTTAGGGCCGATTTCACAAAATGCAAGGTTGATAAGTTTGATACAAGTAAATCATGCTGGATAGATAATATTCCTTTCTGTCCAGTATTTTCTCCTACAAAGGAGGAATTTGAAGATCCTTTGACATATATTCAGAGTATTGCGCCAGTTGCAT
CAAAATATGGGATCTGCAAGATCATCTCTCCCTTGGTTGCCTCAGTAACTGCAGGCATGGTTCTGATGAAGGAGAAGCCAGGATTTAAGTTTACAACTCGGGTGCAGCCTTTGAGACTTGCTAACTGGGATTCTGAAGATAGAGTTACATTCCTTATGAGTGGAAGACATTATTCCTTACGTGATTATGAGAGGATAGCA
AATAAGATATTTACTAAGAAATTTTCAAGTGCTGGCAATCTGCCTGCTAAGTTTGTTGAAGAGGAGTTTTGGCATGAGATATCTTCTGGCAAGACCACAACTGTTGAATATGCTTGTGATATTGAAGGCAGTGCTTTCTCGTCATCAGAAAATGATCCACTTGGAACTAGCAAGTCAAACTTAAAGCATCTTTCAAGACT
CCCAAACTCCACCTTACGCCTTCTCGAGACTGCTATTCCGGGAGTAACAGATCCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTTGAAGATCATTCCTTGTATAGCATTAATTATCATCATTGTGGGGCACCCAAGACTTGGTATGGTGTTCCTGGTCATTCTGCTCCTGACTTTGAAAAGGTAG
TCCGGGAGCATGTTTATGATAAGGAAATACTCTTAAATGAAGGTGAAGATGCAGCATATGATTTGCTTATAGGGAAGACGACAATGTTTCCTCCAAAGATTTTATCTGAGCAGAGAGTCCCTGTTTATAAAGCTGTGCAAAAACCTGGCGAGTTTGTTATCACTTTTCCTCGAGCTTATCATGCAGGTTTTAGTCATGGA
TTCAACTGTGGAGAAGCTGTGAACTTTGCAACAATTGATTGGTTTCCAATGGGTGCATTGGCATGCAAACGTTATGAGCTTCTCAACAGGATGCCACTTCTCCCGCATGAGGAACTGCTTTGTAAAGAAGCAATGCTGCTTTCCAAGAAGACATCTAGCTTCAGTAGTGAAGCAGAAAATAAATCATCTGTAAATTCAGT
AGGAGAGCAGTACTTAAAGGTTGCATTTGTGCGCCTGATGAGATTTCAACACCTTGTGCGCTGGTCACTGAAGAATCTAGGAGTACAATCAACCTTTTTAACGGGACACCCAAGCACATTCATTTGCAATCTTTGCAAACATTCATGTTATGTGGCATTCATTACATGTGAATGCCATTTTCAACCCATATGCCTTAATC
ACGCAACACAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTTATAAGAGAAAATCTGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTGGAACAGCGGCCACTTAGTTTTGATAAACATGATGGATATATT
CCATATTGTGATATACATTCCAGTGATAAACATGGAGAAGAACTCAATAGATCAATATCTGAGGAACATGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTC
AGCTGGAGCTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTTTTATTCTTTCTGTTAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGGGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGGTAGCGGAAGCTTTCTTGCTTGCAACAAATCTACTTCAAAGGAGT
TATTTCAGGACCATGCTGCCTCTAAAACAAGTAATACTGGTGATCAAAGTGAAAATGATTCTGATTCTGAGGCATTTATTGTGAAAAGACGGCGCATAGTAACTCAGAAGGGAATCTTGGTGCAAAGTATCACAAATTTGGAAAACACTAAACAATATTTGGCTGGGACATCTGCCACTAAATGTATCGTTCCCAAGAGT
GCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTGATGGTCACCGTGTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGgtattcaaaaccaaaactaacagataactgtcactttcctgactccttttgaatctaggagatataacaaaagtgtg
gtgcagGTCTTGAATGGGTGGCAGTCAAAGGGTATCTCTAGAGGGTTGGATTTGAAGGCTCATCGAGTTGATATTCAGTGCACTGCTAGTATTGATATGATTAAGGACTATGCATGTTGGGGATTATCATGTCAGGTATTTTAGCTTGTTTTGTATTTACCATTTCTGCTTCAGGAGTCATTTAAGTTAGGTAAATAGTT
CTATCCATGTGAATAGTAGATCACAGAAATGCAATCAATAATACCACAGTAAGATCAACATGTTTTTGGAAAGAAAATGCATCTTATATTTCATTAATGCACACAAAAAGGTTACACCATACAGCTTTACAGTACTGGGTCACAGCACG
Intron 2 GTAGCGGAAG ... TTGTGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.4 | 100 | 710 | 677 |
| A2 | 86.24 | 86 | 510 | 568 |
| A3 | 88.72 | 70 | 593 | 508 |
| A4 | 91.67 | 46 | 482 | 531 |
| A5 | 86.03 | 28 | 166 | 179 |
| A6 | 85.42 | 7 | 48 | 34 |
| A7 | 88 | 24 | 202 | 150 |
| A8 | 90 | 10 | 107 | 73 |
| A9 | 90.22 | 18 | 182 | 150 |
| A10 | 88.39 | 27 | 220 | 191 |
>TRINITY_DN130079_c2_g1_i2 from sample A1 / Example spliced isoformGTTTTATTCTTTCTGTTAAGAAGGTGCATGGCAAAATCTGTAGCTTCTCTGGGCTAAATGCATTTTATTTAGTTTCATTTGTCCCTGTTTTTTGTTGTGCAGCTCAAGAAATGAAATAAAATATACAGCATCTAATTTTTCTTAAATGCAGTGTGTTAAGTCAGGCAGTGACTTGCAAAATCTCTCATCAAAGGGTATCT
CCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGACGGCGCATAGTAACTCAGAAGGGAATCTTGGTGCAAAGTATCACAAATTTGGAAAACACTAAACAATATTTGGCTGGGACATCTGCCACTAAATGTATCGTTCCCAAGAGTGCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTG
ATGGTCACCGTGTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGGT
>TRINITY_DN130079_c2_g1_i1 from sample A1 / Example unspliced isoform:CGGGAAAGAGGGCAGCGGTTCGAATCTCGGCGGGTGGAGTTTCCCGGCGGGTGAACGAACTGCTACAGATTTTTATTGATTCTTCCTTTTACTTACCTACCCGCCTCCCATCCTCCTTATCTCGTTTTATTATTTAACATTCCTCTGCTTCTATTCCGCGTTTTCTTTCACGTCTCCTTCCTTCCTCGCGCGATCCGGAG
CTCTCAGGAGAAATTCGATCGATCTCACGACCTCTGAGAGTTAGCGGATCCGGCGGGCGAGGAATTGGCGTTGCCGACGGGGGAGAATTTGAGGACGAGAAGAAAATTTTGCGGTTTATTTCGGTTTTTCCGCAGTCGATTTGTACGGGCAATTTTAGCGGGATGAACGACGAAGGGTAGACCGAGCAGAATGGTGGTGC
TTCGGGTCACCTCGCCGTCGCAAAATGGTGAAGGGAAGACTTCGTTTGAATGGAGAGGATAAAACTGGGTTAGAAGCGCTTGGCAGGAAAAAGATCCCAAAGAAGTCAGAAGCACTTCATGGAGCAGATATAAATACTTATACCATGGCTAGGAGTGGAGGAGATGCACTACGGATTCGGGAATCGCGAAGGGTATTATT
TCCTGAGAGGGGGGAAAAGTTTGCACAATGCAAAGAAACTTCAGAAGTTAGGGCCGATTTCACAAAATGCAAGGTTGATAAGTTTGATACAAGTAAATCATGCTGGATAGATAATATTCCTTTCTGTCCAGTATTTTCTCCTACAAAGGAGGAATTTGAAGATCCTTTGACATATATTCAGAGTATTGCGCCAGTTGCAT
CAAAATATGGGATCTGCAAGATCATCTCTCCCTTGGTTGCCTCAGTAACTGCAGGCATGGTTCTGATGAAGGAGAAGCCAGGATTTAAGTTTACAACTCGGGTGCAGCCTTTGAGACTTGCTAACTGGGATTCTGAAGATAGAGTTACATTCCTTATGAGTGGAAGACATTATTCCTTACGTGATTATGAGAGGATAGCA
AATAAGATATTTACTAAGAAATTTTCAAGTGCTGGCAATCTGCCTGCTAAGTTTGTTGAAGAGGAGTTTTGGCATGAGATATCTTCTGGCAAGACCACAACTGTTGAATATGCTTGTGATATTGAAGGCAGTGCTTTCTCGTCATCAGAAAATGATCCACTTGGAACTAGCAAGTCAAACTTAAAGCATCTTTCAAGACT
CCCAAACTCCACCTTACGCCTTCTCGAGACTGCTATTCCGGGAGTAACAGATCCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTTGAAGATCATTCCTTGTATAGCATTAATTATCATCATTGTGGGGCACCCAAGACTTGGTATGGTGTTCCTGGTCATTCTGCTCCTGACTTTGAAAAGGTAG
TCCGGGAGCATGTTTATGATAAGGAAATACTCTTAAATGAAGGTGAAGATGCAGCATATGATTTGCTTATAGGGAAGACGACAATGTTTCCTCCAAAGATTTTATCTGAGCAGAGAGTCCCTGTTTATAAAGCTGTGCAAAAACCTGGCGAGTTTGTTATCACTTTTCCTCGAGCTTATCATGCAGGTTTTAGTCATGGA
TTCAACTGTGGAGAAGCTGTGAACTTTGCAACAATTGATTGGTTTCCAATGGGTGCATTGGCATGCAAACGTTATGAGCTTCTCAACAGGATGCCACTTCTCCCGCATGAGGAACTGCTTTGTAAAGAAGCAATGCTGCTTTCCAAGAAGACATCTAGCTTCAGTAGTGAAGCAGAAAATAAATCATCTGTAAATTCAGT
AGGAGAGCAGTACTTAAAGGTTGCATTTGTGCGCCTGATGAGATTTCAACACCTTGTGCGCTGGTCACTGAAGAATCTAGGAGTACAATCAACCTTTTTAACGGGACACCCAAGCACATTCATTTGCAATCTTTGCAAACATTCATGTTATGTGGCATTCATTACATGTGAATGCCATTTTCAACCCATATGCCTTAATC
ACGCAACACAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTTATAAGAGAAAATCTGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTGGAACAGCGGCCACTTAGTTTTGATAAACATGATGGATATATT
CCATATTGTGATATACATTCCAGTGATAAACATGGAGAAGAACTCAATAGATCAATATCTGAGGAACATGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTC
AGCTGGAGCTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTTTTATTCTTTCTGTTAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGGGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGgtagcggaagctttcttgcttgcaacaaatctacttcaaaggagt
tatttcaggaccatgctgcctctaaaacaagtaatactggtgatcaaagtgaaaatgattctgattctgaggcatttattgtgaaaagACGGCGCATAGTAACTCAGAAGGGAATCTTGGTGCAAAGTATCACAAATTTGGAAAACACTAAACAATATTTGGCTGGGACATCTGCCACTAAATGTATCGTTCCCAAGAGT
GCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTGATGGTCACCGTGTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGGTCTTGAATGGGTGGCAGTCAAAGGGTATCTCTAGAGGGTTGGATTTGAAGGCTCATCGAGTTGATATTCAGTGCAC
TGCTAGTATTGATATGATTAAGGACTATGCATGTTGGGGATTATCATGTCAGGGTTGCATATCGCTAAAGCAAATTTTGCCAAAAGCAGAAGCTTGCAAACTAGAGCAATTGGTAGAAAGTGTATTTGGCAAGTCAGCGTCAACCATAAATTCTGCAGTTTTTGCTGAAAAATTTAAAGACACCAGTAGCATAAGCAGCA
AAAAAGGAGCTTATGATACAATGAACGAGGCTAATGATTCTGAGATTACTAAGAGCTCAGGTGCCAAATATAATACTGGCACACTGAAGGCATCCTTGAAATATAATTGCTTTTCAGAAATAAAAAATGGAAACAATCATGGCAAAGAGTCCTATGTGAGAGGGTCCCAAGAAGTTGAATATTATGATAACAAGCAAGAT
AATGAATATAACCAAAAAACAAATCAAGCACACTCACTGTCTTTTGTTAATCCGCAAGAGCAGAGCGCAATATGCAAGCCAGTTTCAAAGCACTCACCCAAAATAGCCTGTCATGCAAATCAAGAAATTACCACACAAGTTGAAGGTTCTTTTAGGAAAGGAACTTGTGACCATTCTGGTATAGAGACTAACAAAACAGT
ACCCAGGGTTAGTCGATTGAAAGTAAAAGGTCCATCTCTTCCTGGCAGTTCTAAAACTCTTTCTTCAGTAGAAAGTGAAGTCCATCACACTAATACTGGTTTTGACATTATCCAAGCTGCCAATTCGTCCAGCAATAATATAACTTCATTACCAAAGAGTAACCCTTCTATGGAAGATAAAGGCCTGCAGATATCAACTC
AGGATTACGTCATTTGCAGTGACAGCCAGTCACCCATGCAAGGATATCTTGATATGAATAAGAGCAAGCTGAAGAAGGGAAATGAAGAGCCAAGGAAATTAAGGAGTATAAACAATTTGTCGGTAGATTTTAAGTCAGAGGCAACTTCAAATGTACCACAATATTTGACATTTGACAATGTAGGAAAAGAAAAGTCTTTT
CAGAATCTGCAGGGTGTAATTCATCAGGAGGGACCAACTGAGACAATTTTGAAATCAGTAAGAGATTCTCATTCTAAAGTTTTGGGTCCCACTTCCAGTAAAGGTGTCCACAATGGTCAGAACATTTTGAATAACTGCCATTCAACTCTTGAAAGGGAATGCAGCACTGCTCATTCAGGCGACTCTGGCACACTTCTCAG
AATACCCTCCGGAGTAATAGTCCCTACAGGTCCTTGTGGCATTCAGAATAGCAGCACAGGTTTTGTAAGTAGTGAAAATGTTACAAATAAACAGGTTGCTCCAATGGCAGACCTTGTTGATGACTCTAACATAGAAATTGGCCTAAGAAGAAATGATGGTCTTCAAAATCAAGCAAATATGTCAAGATCTGAACACAATG
CTGAGAGACCTGCCGTTGAGAAACTGCCCAAAAGAATGGGATCTCCAGATAAACTGTTCACAGAGGTCTCTCATCATAGTTTTTGCAATATTGAAGATTCAATGAAAAGTCCACTTATTGATTTCCCCGAAGACTTGCTCGAAAGCAAGGACAGTATGAAGCAACAGAATAGTTTTATCCAGTCAAGGCATGACTGCTAC
TTGTCTCAGATCAATGAGCAAGAAGTTTCTTCTAGATCTAGGGATTTAAATGATGATGTAGGTTTGGGTCAGCAATCCAGATCATGCAGAAACAGTTTAAGAGATGCGACTCAGGTGGCACCTGATGAAGGCCAGAATTCATGTGGAAGATCTGAAAACAACATTGGTGAAAGATTTGCTTTAAGTACCGGACCTATAAC
CAATAACAAGGTTTCATTTTGCAATAGTTTAGATGTACTACATCAGACTGAATCGGTGGGAAGTTTCCTTTCATGGCACACAAATCTTATCAGTTTGTCTGGAAAAGCAGGGGATATTAACTCAAAAGGCAGGGGAGGAAGCTTTGTGCTATTCAATGAAGACAAAAGCAGCTCCCATACCAATCACTTGGTTCATCATT
CGAATCTGGATTGCACCAAGGAAATAAAGGGACCAAATGAAGTCATTGATGATGACCATCCCTTACAGATGCGTTCTGCCCAAGGCTATCATCCACATCAAAGAGACGATTTCCAGACATATGCGAATAGAAAGGAAGAAAAGGTGGACTATACTTATCTGAATGATTTACCCCAGGGCAGAGACAATGTTCAAGCTTCC
GAGGCTGGCGAAACTTCAAATGATTCTCAAACCAATTCTGCATTCAGGAACAAGTCGGAATGCATTCAGAATCGGATTCTCATTGAAAAGGATGATTGCCGATTCTAGTCAAGCTTGCATCAGAAAGGTATGTTAACAGGGAAATCTTATGGTGTACTAAGAGTTAATTCAAGGGTCTACAGTTCTTGAAATCGCAAAAG
AGCCCATTTTGTATTGGGATTTGGCCAAGCAATCACACACGAGGAAGGAAATAAAACCATCTTCACTGGAAGCTGAAACCCAGCATTCTGTTTAGCAGTATAGTATTTGTAGGTGGCAATGGCATGATCTTACTCCAATAAATGGTGAATAAAAAATGCAAGAGGCATACATATCAAAGCAGTGTTATTGTTAACATAGC
AACCAAGTGAAGTCACCCGACCAAAGTCTACCAATTGATTGGTGGGTGAGTTCTGGAAACATGTTACTGGTTGGCTTTAATGAGATTAGCTTGAACGCCAGATTCAGGTTTAATTTCCATAGATCAACTTGTTTAGTCAGGTCACAGTCTGAGATTGCGATTCACTCTACAAACGGTTTGCATTCCTAACTTCAATCCGC
AAACAGTTTCTCATGGACTATTAGCAGTGCCATCAGAGGTAACATTATCTCATGAGCACTGTCTTGAGCTAACGAATTTAGAAGCAGGACCATAACATTTGATTTCGGGCGGTTCAAGATAGTAGTAAATGCAATGGGCCAGTTTGTACAATATTGTCAATTGCTTCTTTCATTTGTATTGACAGGCGGCATTTCCCTGT
CTATTGTATTTCTGCCTGCATTTTTAGGTCATTCTTGGGGTCAAATTCTTTATTCTTTTACACTGCTGCAGCACTTGGATGTGAATAATTACAGTGATGTAAATCACGTGAGAGAGCTGGCAGCCTGTATTCATCCTGGCAGTGAGGCTAAACAAAATTGGAGCAAAGCTTTACTGTCTCTTCAAGCTTTTCTTTTAGCA
CTTAAATTCTGGAATTGGAGATCCCCATATTCATTAACAAGATTCTTGTAGAATTGGCCCTTGGATATTATTAGTGAATTTTCTTGACTAGAGGTAAATTTCATGGGTATTTGCCAAATAATGTTTCGTATATTGCAGGTTGTTTTGCATTAGTTTGGCTATTAAATGTTCCCTTCTGATAATGTCGCAGACATGCTAAT
AGATTATGATTTCCTTGCCATCATGAAGTTTCTTTCTTTAAAGGTCTCAGAATATAACGGTGAAATAAGATCTTTCATTCCACTAAGCCTTGAATAATATTATCTACAAGATAAGTTGGTGCTATTTTCCTTGCCCC
Intron 3 GTATACCGTA ... GGTAAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.64 | 1075.6 | 170.6 | 230.4 |
| A2 | 16.08 | 930.2 | 156.4 | 178.2 |
| A3 | 16.1 | 930 | 156.2 | 178.4 |
| A4 | 15.44 | 1029 | 171.2 | 187.8 |
| A5 | 14.62 | 368 | 68.8 | 63 |
| A6 | 14.42 | 51 | 8.4 | 8.6 |
| A7 | 11.6 | 259 | 51.4 | 34 |
| A8 | 21.78 | 82.6 | 12 | 23 |
| A9 | 16.08 | 144 | 16.4 | 27.6 |
| A10 | 15.69 | 246 | 30.8 | 45.8 |
>TRINITY_DN117733_c0_g1_i5 from sample A3 / Example spliced isoformGGGGCAGGTACGTACTTGTGAAAGGCCGGGAAAGAGGGCAGCGGTTCGAATCTCGGCGGGTGGAGTTTCCCGGCGGGTGAACGAACTGCTACAGATTTTTATTGATTCTTCCTTTTACTTACCTACCCGCCTCCCATCCTCCTTATCTCGTTTTATTATTTAACATTCCTCTGCTTCTATTCCGCGTTTTCTTTCACGTC
TCCTTCCTTCCTCGCGCGATCCGGAGCTCTCAGGAGAAATTCGATCGATCTCACGACCTCTGAGAGTTAGCGGATCCGGCGGGCGAGGAATTGGCGTTGCCGACGGGGGAGAATTTGAGGACGAGAAGAAAATTTTGCGGTTTATTTCGGTTTTTCCGCAGTCGATTTGTACGGGCAATTTTAGCGGGATGAACGACGAA
GGGTAGACCGAGCAGAATGGTGGTGCTTCGGGTCACCTCGCCGTCGCAAAATGGTGAAGGGAAGACTTCGTTTGAATGGAGAGGATAAAACTGGGTTAGAAGCGCTTGGCAGGAAAAAGATCCCAAAGAAGTCAGAAGCACTTCATGGAGCAGATATAAATACTTATACCATGGCTAGGAGTGGAGGAGATGCACTACGG
ATTCGGGAATCGCGAAGGGTATTATTTCCTGAGAGGGGGGAAAAGTTTGCACAATGCAAAGAAACTTCAGAAGTTAGGGCCGATTTCACAAAATGCAAGGTTGATAAGTTTGATACAAGTAAATCATGCTGGATAGATAATATTCCTTTCTGTCCAGTATTTTCTCCTACAAAGGAGGAATTTGAAGATCCTTTGACATA
TATTCAGAGTATTGCGCCAGTTGCATCAAAATATGGGATCTGCAAGATCATCTCTCCCTTGGTTGCCTCAGTAACTGCAGGCATGGTTCTGATGAAGGAGAAGCCAGGATTTAAGTTTACAACTCGGGTGCAGCCTTTGAGACTTGCTAACTGGGATTCTGAAGATAGAGTTACATTCCTTATGAGTGGAAGGCGAGTTT
TATACCTAGTTGCTTTTCGATGTTCATCAAGGGCAGACTGATTTAGTTTTATCGACCTATGCTACTTTATAATTTAATGTGTTAACATTATTTGGTTGTTCATTACCATGTTTCAGACATTATTCCTTACGTGATTATGAGAGGATAGCAAATAAGATATTTACTAAGAAATTTTCAAGTGCTGGCAATCTGCCTGCTAA
GTTTGTTGAAGAGGAGTTTTGGCATGAGATATCTTCTGGCAAGACCACAACTGTTGAATATGCTTGTGATATTGAAGGCAGTGCTTTCTCGTCATCAGAAAATGATCCACTTGGAACTAGCAAGTCAAACTTAAAGCATCTTTCAAGACTCCCAAACTCCACCTTACGCCTTCTCGAGACTGCTATTCCGGGAGTAACAG
ATCCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTTGAAGATCATTCCTTGTATAGCATTAATTATCATCATTGTGGGGCACCCAAGACTTGGTATGGTGTTCCTGGTCATTCTGCTCCTGACTTTGAAAAGGTAGTCCGGGAGCATGTTTATGATAAGGAAATACTCTTAAATGAAGGTGAAGAT
GCAGCATATGATTTGCTTATAGGGAAGACGACAATGTTTCCTCCAAAGATTTTATCTGAGCAGAGAGTCCCTGTTTATAAAGCTGTGCAAAAACCTGGCGAGTTTGTTATCACTTTTCCTCGAGCTTATCATGCAGGTTTTAGTCATGGATTCAACTGTGGAGAAGCTGTGAACTTTGCAACAATTGATTGGTTTCCAAT
GGGTGCATTGGCATGCAAACGTTATGAGCTTCTCAACAGGATGCCACTTCTCCCGCATGAGGAACTGCTTTGTAAAGAAGCAATGCTGCTTTCCAAGAAGACATCTAGCTTCAGTAGTGAAGCAGAAAATAAATCGTCTGTAAATTCAGTAGGAGAGCAGTACTTAAAGGTTGCATTTGTGCGCCTGATGAGATTTCAAC
ACCTTGTGCGCTGGTCACTGAAGAATCTAGGAGTACAATCAACCTTTTTAACGGGACACCCAAGCACATTCATTTGCAATCTTTGCAAACATTCATGTTATGTGGCATTCATTACATGTGAATGCCATTTTCAACCCGTATGCCTTAATCACGCAACACAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTT
ATAAGAGAAAATCTGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTTGAACAGCGGCCACTTAATTTTGATAAACATGATGGATATATTCCATATTGTGATATACATTCCAGTGATAAACATGGAGAAGAACTCAGTAG
ATCAATATCTGAGGAACAGGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTCAGCTGGAGCTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTT
TTATTCTTTCTGTTAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGAGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGG
>TRINITY_DN117733_c0_g1_i3 from sample A3 / Example unspliced isoform:TCAACCCGTATGCCTTAATCACGgtataccgtataacctgcttttagcctcatttctttctgagttgttgctggatatgcaaacatcccatgtgattatattctcttatatctcaatttgatatttttgaggtaaagcagCAACACAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTTATAAGAGAAAATC
TGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTTGAACAGCGGCCACTTAATTTTGATAAACATGATGGATATATTCCATATTGTGATATACATTCCAGTGATAAACATGGAGAAGAACTCAGTAGATCAATATCTGAG
GAACAGGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTCAGCTGGAGCTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTTTTATTCTTTCTGT
TAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGAGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGGTAGCGGAAGCTTTCTTGCTTGCAACAAATCTACTTCAAAGGAGTTATTTCAGGACCATGCTGCCTCTAAAACAAGTAATACTGGTGATCAAAGTGAAAATGATTCTG
ATTCTGAGGCATTTATTGTGAAAAGACGGCGCATAGTAACTCAGAAGGGAATCTTGGTGCAAAATATCACAAATTTGGAAAACACTAAACAATATTTGGCTGGGACATCTGCCACTAAATGTAGCGTTCCCAAGAGTGCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTGATGGTCACCGT
GTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGGTCTTGAATGGGTGGCAGTCAAAGGGTATCTCTAGAGGGTTGGATTTGAAGGCTCATCGAGTTGATATTCAGTGCACTGCTAGTATTGATATGATTAAGGACTATGCATGTTGGGGATTATCATGTCAGGGTTGCATATC
GCTAAAGCAAATTTTGCCAAAAGCAGAAGCTTGCAAACTAGAGCAATTGGTAGAAAGTGTATTTGGCAAGTCAGCGTCAACCATAAATTCTGCAGTTTTTGCTGAAAAATTTAAAGACACCAGTAGCATAAGCAGCAAAAAAGGAGCTTATGATACAATGAACGAGGCTAATGATTCTGAGATTACTAAGAGCTCAGGTG
CTAAATATAATACTGGCACACTGAAGGCATCCTTGAAATATAATTGCTTTTCAGAAATAAAAAATGGAAACAATCATGACAAAGAGTCCTATGTGAGAGGGTCCCAAGAAGTTGAATATTATGATAACAAGCAAGATAATGAATATAACCAAAAAACAAATCAAGCACACTCACTGTCTTTTGTTAATCCGCAAGAGCAG
AGCGCAATATGCAAGCCAGTTTCAAAGCACTCACCCAAAATAGCCTGTCATGCAAATCAAGAAATTACCACACAAGTTGAAGGTTCTTTTAGGAAAGGAACTTGTGGCCATTCTGGTATAGAGACTAACAAAACAGTACCCAGGGTTAGTCGATTGAAAGTAAAAGGTCCATCTCTTCCTGGCAGTTCTAAAACTCTTTC
TTCAGTAGAAAGTGAAGTCCATCACACTAATACTGGTTTTGACATTATCCAAGCTGCCAATTCGTCCAGCAATAATATAACTTCATTACCAAAGAGTAACCCTTCTATGGAAGATAAAGGCCTGCAGATATCAACTCAGGATTACGTCATTTGCAGTGACAGCCAGTCACCCATGCAAGGATATCTTGATATGAATAAGA
GCAAGCTGAAGAAGGGAAATGAAGAGCCAAGGAAATTAAGGAGTATAAACAATTTGTCGGTAGATTTTAAGTCAGAGGCAACTTCAAATGTACCACAATATTTGACATTTGACAATGTAGGAAAAGAAAAGTCTTTTCAGAATCTGCAGGGTGTAATTCATCAGGAGGGACCAACTGAGACAATTTTGAAATCAGTAAGA
GATTCTCATTCTAAAGTTTTGGGTCCCACTTCCAGTAAAGGTGTCCACAATGGTCAGAACATTTTGAATAACTGCCATTCAACTCTTGAAAGGGAATGCAGCACTGCTCATTCAGGCGACTCTGGCATACTTCTCAGAATACCCTCCGGAGTAATAGTCCCTACAGGTCCTTGTGGCATTCAGAATAGCAGCACAGGTTT
TGTAAGTAGTGAAAATGTTACAAATAAACAGGTTGCTCCAATGGCAGACCTTGTTGATGACTCTAACATAGAAATTGGCCTAAGAAGAAATGATGGTCTTCAAAATCAAGCAAATATGTCAAGATCTGAACACAATGCTGAGAGACCTGCCGTTGAGAAACTGCCCAAAAGAATGGGATCTCCAGATAAACTGTTCACAG
AGGTCTCTCATCATAGTTTTTGCAATATTGAAGATTCAATGAAAAGTCCACTTATTGATTTCCCCGAAGACTTGCTCGAAAGCAAGGACAGTATGAAGCAACAGAATAGTTTTATCCAGTCAAGGCATGACTGCTACTTGTCTCAGATCAATGAGCAAGAAGTTTCTTCTAGATCTAGGGATTTAAATGATGATGTAGGT
TTGGGTCAGCAATCCAAATCATGCAGAAACAGTTTAAGAGATGCGACTCAGGTGGCACCTGATGAAGGCCAGAGTTCATGTGGAAGATCTGAAAACAACATTGGTGAAAGATTTGCTTTAAGTACCGGACCTATAACCAATAACAAGGTTTCATTTTGCAATAGTTTAGATGTACTACATCAGACTGAATCGGTGGGAAG
TTTCCTTTCATGGCACACAAATCTTATCAGTTTGTCTGGAAAAGCAGGGGATATTAACTCAAAAGGCAGGGGAGGAAGCTTTGTGCTATTCAATGAAGACAAAAGCAGCTCCCATACCAATCACTTGGTTCATCATTCGAATCTGGATTGCACCAAGGAAATAAAGGGACCAAATGAAGTCATTGATGATGACCATCCCT
TACAGATGCGTTCTGCCCAAGGCTATCATCCACATCAAAGAGACGATTTCCAGACATATGCGAATAGAAAGGAAGAAAAGGTGGACTATACTTATCTGAATGATTTACCCCAGGGCAGAGACAATGTTCAAGCTTCCGAGGCTGGCGAAACTTCAAATGATTCTCAAACCAATTCTGCATGCAGGAACAAGTCGGAATGC
ATTCAGAATCGGATTCTCATTGAAAAGGATGATTGCCGATTCTAGTCAAGCTTGCATCAGAAAGGTATGTTAACAGGGAAATCTTATGGTGTACTAAGAGTTAATTCAAGGGTCTACAGTTCTTGAAATCGCAAAAGAGCCCATTTTGTATTGGGATTTGGCCAAGCAATCACACACGAGGAAGGAAATAAAACCATCTT
CACTGGAAGCTGAAACCCAGCATTCTGTTTAGCAGTATAGTATTTGTAGGTGGCAATGGCATGATCTTACTCCAATAAATGGTGAATAAAAAATGCAAGAGGCATACATATCAAAGCAGTGTTATTGTTAACATAGCAACCAAGTGAAGTCACCCGACCAAAGTCTACCAATTGATTGGTGGGTGAGTTCTGGAAACATG
TTACTGGTTGGCTTTAATGAGATTAGCTTGAACGTCAGGTTCAGGTTTAATTTCCATAGATCAACTTGTTTAGTCAGGTCACAGTCTGAGATTGCGATTCACTCTACAAACGGTTTGCATTCCTAACTTCAATCCGCAAACAGTTTCTCATGGACTATTAGCAGTGCCATCAGAGGTAACATTATCTCATGAGCACTGTC
TTGAGCTAACGAATTTAGAAGCAGGACCATAACATTTGATTTCGGGCGGTTCAAGATAGTAGTAAATGCAATGGGCCAGTTTGTACAATATTGTCAATTGCTTCTTTCATTTGTATTGACAGGCGGCATTTCCCTGTCTATTGTATTTCTGCCTGCATTTTTAGGTCATTCTTGGGGTCAAATTCTTTATTCTTTTACAC
TGCTGCAGCACTTGGATGTGAATAATTACAGTGATGTAAATCACGTGAGAGAGCTGGCAGCCTGTATTCATCCTGGCAGTGAGGCTAAACAAAATTGGAGCAAAGCTTTACTGTCTCTTCAAGCTTTTCTTTTAGCACTTAAATTCTGGAATTGGAGATCCCCATATTCATTAACAAGATTCTTGTAGAATTGGCCCTTG
GATATTATTAGTGAATTTTCTTGACTAGAGGTAAATTTCATGGGTATTTGCCAAATAATGTTTCGTATATTGCAGGTTGTTTTGCATTAGTTTGGCTATTAAATGTTCCCTTCTGATAATGTCGCAGACATGCTAATAGATTATGATTTCCTTGCCATCATGAAGTTTCTTTCTTTAAAGGTCTCAGAATATAACGGTGA
AATAAGATCTTTCATTCCACTAAGCCTTGAATAATATTATCTACAAGATAAGTTGGTGCTATTTTCCTTGCCCAAAAAATTTATTGTCTCTGATTCTGTCTCGAAATCTCAAATTGGATCAGCA
Intron 4 GCGAGTTTTA ... CATGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.72 | 1142.9 | 166.4 | 229.4 |
| A2 | 18.76 | 989 | 108.9 | 228.4 |
| A3 | 18.8 | 1169 | 152.9 | 270.7 |
| A4 | 19.07 | 948.1 | 115.7 | 223.4 |
| A5 | 16.52 | 602 | 70 | 119.1 |
| A6 | 17.63 | 58 | 5.7 | 12.4 |
| A7 | 14.41 | 202 | 20 | 34 |
| A8 | 15.25 | 46 | 0.7 | 8.3 |
| A9 | 19.77 | 178 | 22.1 | 43.9 |
| A10 | 15.18 | 332 | 37.1 | 59.4 |
>TRINITY_DN130079_c2_g1_i1 from sample A1 / Example spliced isoformCGGGAAAGAGGGCAGCGGTTCGAATCTCGGCGGGTGGAGTTTCCCGGCGGGTGAACGAACTGCTACAGATTTTTATTGATTCTTCCTTTTACTTACCTACCCGCCTCCCATCCTCCTTATCTCGTTTTATTATTTAACATTCCTCTGCTTCTATTCCGCGTTTTCTTTCACGTCTCCTTCCTTCCTCGCGCGATCCGGAG
CTCTCAGGAGAAATTCGATCGATCTCACGACCTCTGAGAGTTAGCGGATCCGGCGGGCGAGGAATTGGCGTTGCCGACGGGGGAGAATTTGAGGACGAGAAGAAAATTTTGCGGTTTATTTCGGTTTTTCCGCAGTCGATTTGTACGGGCAATTTTAGCGGGATGAACGACGAAGGGTAGACCGAGCAGAATGGTGGTGC
TTCGGGTCACCTCGCCGTCGCAAAATGGTGAAGGGAAGACTTCGTTTGAATGGAGAGGATAAAACTGGGTTAGAAGCGCTTGGCAGGAAAAAGATCCCAAAGAAGTCAGAAGCACTTCATGGAGCAGATATAAATACTTATACCATGGCTAGGAGTGGAGGAGATGCACTACGGATTCGGGAATCGCGAAGGGTATTATT
TCCTGAGAGGGGGGAAAAGTTTGCACAATGCAAAGAAACTTCAGAAGTTAGGGCCGATTTCACAAAATGCAAGGTTGATAAGTTTGATACAAGTAAATCATGCTGGATAGATAATATTCCTTTCTGTCCAGTATTTTCTCCTACAAAGGAGGAATTTGAAGATCCTTTGACATATATTCAGAGTATTGCGCCAGTTGCAT
CAAAATATGGGATCTGCAAGATCATCTCTCCCTTGGTTGCCTCAGTAACTGCAGGCATGGTTCTGATGAAGGAGAAGCCAGGATTTAAGTTTACAACTCGGGTGCAGCCTTTGAGACTTGCTAACTGGGATTCTGAAGATAGAGTTACATTCCTTATGAGTGGAAGACATTATTCCTTACGTGATTATGAGAGGATAGCA
AATAAGATATTTACTAAGAAATTTTCAAGTGCTGGCAATCTGCCTGCTAAGTTTGTTGAAGAGGAGTTTTGGCATGAGATATCTTCTGGCAAGACCACAACTGTTGAATATGCTTGTGATATTGAAGGCAGTGCTTTCTCGTCATCAGAAAATGATCCACTTGGAACTAGCAAGTCAAACTTAAAGCATCTTTCAAGACT
CCCAAACTCCACCTTACGCCTTCTCGAGACTGCTATTCCGGGAGTAACAGATCCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTTGAAGATCATTCCTTGTATAGCATTAATTATCATCATTGTGGGGCACCCAAGACTTGGTATGGTGTTCCTGGTCATTCTGCTCCTGACTTTGAAAAGGTAG
TCCGGGAGCATGTTTATGATAAGGAAATACTCTTAAATGAAGGTGAAGATGCAGCATATGATTTGCTTATAGGGAAGACGACAATGTTTCCTCCAAAGATTTTATCTGAGCAGAGAGTCCCTGTTTATAAAGCTGTGCAAAAACCTGGCGAGTTTGTTATCACTTTTCCTCGAGCTTATCATGCAGGTTTTAGTCATGGA
TTCAACTGTGGAGAAGCTGTGAACTTTGCAACAATTGATTGGTTTCCAATGGGTGCATTGGCATGCAAACGTTATGAGCTTCTCAACAGGATGCCACTTCTCCCGCATGAGGAACTGCTTTGTAAAGAAGCAATGCTGCTTTCCAAGAAGACATCTAGCTTCAGTAGTGAAGCAGAAAATAAATCATCTGTAAATTCAGT
AGGAGAGCAGTACTTAAAGGTTGCATTTGTGCGCCTGATGAGATTTCAACACCTTGTGCGCTGGTCACTGAAGAATCTAGGAGTACAATCAACCTTTTTAACGGGACACCCAAGCACATTCATTTGCAATCTTTGCAAACATTCATGTTATGTGGCATTCATTACATGTGAATGCCATTTTCAACCCATATGCCTTAATC
ACGCAACACAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTTATAAGAGAAAATCTGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTGGAACAGCGGCCACTTAGTTTTGATAAACATGATGGATATATT
CCATATTGTGATATACATTCCAGTGATAAACATGGAGAAGAACTCAATAGATCAATATCTGAGGAACATGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTC
AGCTGGAGCTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTTTTATTCTTTCTGTTAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGGGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGGTAGCGGAAGCTTTCTTGCTTGCAACAAATCTACTTCAAAGGAGT
TATTTCAGGACCATGCTGCCTCTAAAACAAGTAATACTGGTGATCAAAGTGAAAATGATTCTGATTCTGAGGCATTTATTGTGAAAAGACGGCGCATAGTAACTCAGAAGGGAATCTTGGTGCAAAGTATCACAAATTTGGAAAACACTAAACAATATTTGGCTGGGACATCTGCCACTAAATGTATCGTTCCCAAGAGT
GCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTGATGGTCACCGTGTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGGTCTTGAATGGGTGGCAGTCAAAGGGTATCTCTAGAGGGTTGGATTTGAAGGCTCATCGAGTTGATATTCAGTGCAC
TGCTAGTATTGATATGATTAAGGACTATGCATGTTGGGGATTATCATGTCAGGGTTGCATATCGCTAAAGCAAATTTTGCCAAAAGCAGAAGCTTGCAAACTAGAGCAATTGGTAGAAAGTGTATTTGGCAAGTCAGCGTCAACCATAAATTCTGCAGTTTTTGCTGAAAAATTTAAAGACACCAGTAGCATAAGCAGCA
AAAAAGGAGCTTATGATACAATGAACGAGGCTAATGATTCTGAGATTACTAAGAGCTCAGGTGCCAAATATAATACTGGCACACTGAAGGCATCCTTGAAATATAATTGCTTTTCAGAAATAAAAAATGGAAACAATCATGGCAAAGAGTCCTATGTGAGAGGGTCCCAAGAAGTTGAATATTATGATAACAAGCAAGAT
AATGAATATAACCAAAAAACAAATCAAGCACACTCACTGTCTTTTGTTAATCCGCAAGAGCAGAGCGCAATATGCAAGCCAGTTTCAAAGCACTCACCCAAAATAGCCTGTCATGCAAATCAAGAAATTACCACACAAGTTGAAGGTTCTTTTAGGAAAGGAACTTGTGACCATTCTGGTATAGAGACTAACAAAACAGT
ACCCAGGGTTAGTCGATTGAAAGTAAAAGGTCCATCTCTTCCTGGCAGTTCTAAAACTCTTTCTTCAGTAGAAAGTGAAGTCCATCACACTAATACTGGTTTTGACATTATCCAAGCTGCCAATTCGTCCAGCAATAATATAACTTCATTACCAAAGAGTAACCCTTCTATGGAAGATAAAGGCCTGCAGATATCAACTC
AGGATTACGTCATTTGCAGTGACAGCCAGTCACCCATGCAAGGATATCTTGATATGAATAAGAGCAAGCTGAAGAAGGGAAATGAAGAGCCAAGGAAATTAAGGAGTATAAACAATTTGTCGGTAGATTTTAAGTCAGAGGCAACTTCAAATGTACCACAATATTTGACATTTGACAATGTAGGAAAAGAAAAGTCTTTT
CAGAATCTGCAGGGTGTAATTCATCAGGAGGGACCAACTGAGACAATTTTGAAATCAGTAAGAGATTCTCATTCTAAAGTTTTGGGTCCCACTTCCAGTAAAGGTGTCCACAATGGTCAGAACATTTTGAATAACTGCCATTCAACTCTTGAAAGGGAATGCAGCACTGCTCATTCAGGCGACTCTGGCACACTTCTCAG
AATACCCTCCGGAGTAATAGTCCCTACAGGTCCTTGTGGCATTCAGAATAGCAGCACAGGTTTTGTAAGTAGTGAAAATGTTACAAATAAACAGGTTGCTCCAATGGCAGACCTTGTTGATGACTCTAACATAGAAATTGGCCTAAGAAGAAATGATGGTCTTCAAAATCAAGCAAATATGTCAAGATCTGAACACAATG
CTGAGAGACCTGCCGTTGAGAAACTGCCCAAAAGAATGGGATCTCCAGATAAACTGTTCACAGAGGTCTCTCATCATAGTTTTTGCAATATTGAAGATTCAATGAAAAGTCCACTTATTGATTTCCCCGAAGACTTGCTCGAAAGCAAGGACAGTATGAAGCAACAGAATAGTTTTATCCAGTCAAGGCATGACTGCTAC
TTGTCTCAGATCAATGAGCAAGAAGTTTCTTCTAGATCTAGGGATTTAAATGATGATGTAGGTTTGGGTCAGCAATCCAGATCATGCAGAAACAGTTTAAGAGATGCGACTCAGGTGGCACCTGATGAAGGCCAGAATTCATGTGGAAGATCTGAAAACAACATTGGTGAAAGATTTGCTTTAAGTACCGGACCTATAAC
CAATAACAAGGTTTCATTTTGCAATAGTTTAGATGTACTACATCAGACTGAATCGGTGGGAAGTTTCCTTTCATGGCACACAAATCTTATCAGTTTGTCTGGAAAAGCAGGGGATATTAACTCAAAAGGCAGGGGAGGAAGCTTTGTGCTATTCAATGAAGACAAAAGCAGCTCCCATACCAATCACTTGGTTCATCATT
CGAATCTGGATTGCACCAAGGAAATAAAGGGACCAAATGAAGTCATTGATGATGACCATCCCTTACAGATGCGTTCTGCCCAAGGCTATCATCCACATCAAAGAGACGATTTCCAGACATATGCGAATAGAAAGGAAGAAAAGGTGGACTATACTTATCTGAATGATTTACCCCAGGGCAGAGACAATGTTCAAGCTTCC
GAGGCTGGCGAAACTTCAAATGATTCTCAAACCAATTCTGCATTCAGGAACAAGTCGGAATGCATTCAGAATCGGATTCTCATTGAAAAGGATGATTGCCGATTCTAGTCAAGCTTGCATCAGAAAGGTATGTTAACAGGGAAATCTTATGGTGTACTAAGAGTTAATTCAAGGGTCTACAGTTCTTGAAATCGCAAAAG
AGCCCATTTTGTATTGGGATTTGGCCAAGCAATCACACACGAGGAAGGAAATAAAACCATCTTCACTGGAAGCTGAAACCCAGCATTCTGTTTAGCAGTATAGTATTTGTAGGTGGCAATGGCATGATCTTACTCCAATAAATGGTGAATAAAAAATGCAAGAGGCATACATATCAAAGCAGTGTTATTGTTAACATAGC
AACCAAGTGAAGTCACCCGACCAAAGTCTACCAATTGATTGGTGGGTGAGTTCTGGAAACATGTTACTGGTTGGCTTTAATGAGATTAGCTTGAACGCCAGATTCAGGTTTAATTTCCATAGATCAACTTGTTTAGTCAGGTCACAGTCTGAGATTGCGATTCACTCTACAAACGGTTTGCATTCCTAACTTCAATCCGC
AAACAGTTTCTCATGGACTATTAGCAGTGCCATCAGAGGTAACATTATCTCATGAGCACTGTCTTGAGCTAACGAATTTAGAAGCAGGACCATAACATTTGATTTCGGGCGGTTCAAGATAGTAGTAAATGCAATGGGCCAGTTTGTACAATATTGTCAATTGCTTCTTTCATTTGTATTGACAGGCGGCATTTCCCTGT
CTATTGTATTTCTGCCTGCATTTTTAGGTCATTCTTGGGGTCAAATTCTTTATTCTTTTACACTGCTGCAGCACTTGGATGTGAATAATTACAGTGATGTAAATCACGTGAGAGAGCTGGCAGCCTGTATTCATCCTGGCAGTGAGGCTAAACAAAATTGGAGCAAAGCTTTACTGTCTCTTCAAGCTTTTCTTTTAGCA
CTTAAATTCTGGAATTGGAGATCCCCATATTCATTAACAAGATTCTTGTAGAATTGGCCCTTGGATATTATTAGTGAATTTTCTTGACTAGAGGTAAATTTCATGGGTATTTGCCAAATAATGTTTCGTATATTGCAGGTTGTTTTGCATTAGTTTGGCTATTAAATGTTCCCTTCTGATAATGTCGCAGACATGCTAAT
AGATTATGATTTCCTTGCCATCATGAAGTTTCTTTCTTTAAAGGTCTCAGAATATAACGGTGAAATAAGATCTTTCATTCCACTAAGCCTTGAATAATATTATCTACAAGATAAGTTGGTGCTATTTTCCTTGCCCC
>TRINITY_DN130079_c2_g1_i4 from sample A1 / Example unspliced isoform:CGGGAAAGAGGGCAGCGGTTCGAATCTCGGCGGGTGGAGTTTCCCGGCGGGTGAACGAACTGCTACAGATTTTTATTGATTCTTCCTTTTACTTACCTACCCGCCTCCCATCCTCCTTATCTCGTTTTATTATTTAACATTCCTCTGCTTCTATTCCGCGTTTTCTTTCACGTCTCCTTCCTTCCTCGCGCGATCCGGAG
CTCTCAGGAGAAATTCGATCGATCTCACGACCTCTGAGAGTTAGCGGATCCGGCGGGCGAGGAATTGGCGTTGCCGACGGGGGAGAATTTGAGGACGAGAAGAAAATTTTGCGGTTTATTTCGGTTTTTCCGCAGTCGATTTGTACGGGCAATTTTAGCGGGATGAACGACGAAGGGTAGACCGAGCAGAATGGTGGTGC
TTCGGGTCACCTCGCCGTCGCAAAATGGTGAAGGGAAGACTTCGTTTGAATGGAGAGGATAAAACTGGGTTAGAAGCGCTTGGCAGGAAAAAGATCCCAAAGAAGTCAGAAGCACTTCATGGAGCAGATATAAATACTTATACCATGGCTAGGAGTGGAGGAGATGCACTACGGATTCGGGAATCGCGAAGGGTATTATT
TCCTGAGAGGGGGGAAAAGTTTGCACAATGCAAAGAAACTTCAGAAGTTAGGGCCGATTTCACAAAATGCAAGGTTGATAAGTTTGATACAAGTAAATCATGCTGGATAGATAATATTCCTTTCTGTCCAGTATTTTCTCCTACAAAGGAGGAATTTGAAGATCCTTTGACATATATTCAGAGTATTGCGCCAGTTGCAT
CAAAATATGTGAGAGATGAAGTCATGTATTATTCACTCTTTGATTAGAAGCTTTTCTTAAACATATTCCAAAGAAAGGGATCTGCAAGATCATCTCTCCCTTGGTTGCCTCAGTAACTGCAGGCATGGTTCTGATGAAGGAGAAGCCAGGATTTAAGTTTACAACTCGGGTGCAGCCTTTGAGACTTGCTAACTGGGATT
CTGAAGATAGAGTTACATTCCTTATGAGTGGAAGgcgagttttatacctagttgcttttcgatgttcatcaagggcagactgatttagttttatcgacctatgctactttataatttaatgtgttaacattatttggttgttcattaccatgtttcagACATTATTCCTTACGTGATTATGAGAGGATAGCAAATAAGAT
ATTTACTAAGAAATTTTCAAGTGCTGGCAATCTGCCTGCTAAGTTTGTTGAAGAGGAGTTTTGGCATGAGATATCTTCTGGCAAGACCACAACTGTTGAATATGCTTGTGATATTGAAGGCAGTGCTTTCTCGTCATCAGAAAATGATCCACTTGGAACTAGCAAGTCAAACTTAAAGCATCTTTCAAGACTCCCAAACT
CCACCTTACGCCTTCTCGAGACTGCTATTCCGGGAGTAACAGATCCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTTGAAGATCATTCCTTGTATAGCATTAATTATCATCATTGTGGGGCACCCAAGACTTGGTATGGTGTTCCTGGTCATTCTGCTCCTGACTTTGAAAAGGTAGTCCGGGAG
CATGTTTATGATAAGGAAATACTCTTAAATGAAGGTGAAGATGCAGCATATGATTTGCTTATAGGGAAGACGACAATGTTTCCTCCAAAGATTTTATCTGAGCAGAGAGTCCCTGTTTATAAAGCTGTGCAAAAACCTGGCGAGTTTGTTATCACTTTTCCTCGAGCTTATCATGCAGGTTTTAGTCATGGATTCAACTG
TGGAGAAGCTGTGAACTTTGCAACAATTGATTGGTTTCCAATGGGTGCATTGGCATGCAAACGTTATGAGCTTCTCAACAGGATGCCACTTCTCCCGCATGAGGAACTGCTTTGTAAAGAAGCAATGCTGCTTTCCAAGAAGACATCTAGCTTCAGTAGTGAAGCAGAAAATAAATCATCTGTAAATTCAGTAGGAGAGC
AGTACTTAAAGGTTGCATTTGTGCGCCTGATGAGATTTCAACACCTTGTGCGCTGGTCACTGAAGAATCTAGGAGTACAATCAACCTTTTTAACGGGACACCCAAGCACATTCATTTGCAATCTTTGCAAACATTCATGTTATGTGGCATTCATTACATGTGAATGCCATTTTCAACCCATATGCCTTAATCACGCAACA
CAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTTATAAGAGAAAATCTGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTGGAACAGCGGCCACTTAGTTTTGATAAACATGATGGATATATTCCATATTG
TGATATACATTCCAGTGATAAACATGGAGAAGAACTCAATAGATCAATATCTGAGGAACATGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTCAGCTGGAG
CTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTTTTATTCTTTCTGTTAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGGGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAG
Intron 5 GTATGGGTGA ... AATGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.58 | 731 | 2 | 178 |
| A2 | 15.22 | 635 | 0 | 114 |
| A3 | 19.66 | 617 | 0 | 151 |
| A4 | 20.87 | 580 | 7 | 153 |
| A5 | 19.79 | 231 | 2 | 57 |
| A6 | 17.95 | 32 | 0 | 7 |
| A7 | 16.33 | 210 | 0 | 41 |
| A8 | 22.55 | 79 | 0 | 23 |
| A9 | 18.27 | 170 | 0 | 38 |
| A10 | 18.47 | 203 | 0 | 46 |
>TRINITY_DN117733_c0_g1_i3 from sample A3 / Example spliced isoformTCAACCCGTATGCCTTAATCACGGTATACCGTATAACCTGCTTTTAGCCTCATTTCTTTCTGAGTTGTTGCTGGATATGCAAACATCCCATGTGATTATATTCTCTTATATCTCAATTTGATATTTTTGAGGTAAAGCAGCAACACAGGCGAGCGAGTGTACATGTGGCAGTGCAGGGACTGTTTTTATAAGAGAAAATC
TGTTAGAAATGGAAGCTGCAGCACGAAAATTTGAAGAGGAGCAAGGAATTTTAGAAGAAGCTTTGAAAGAACTGGGAAGAGATTATGCAGCTGTTGAACAGCGGCCACTTAATTTTGATAAACATGATGGATATATTCCATATTGTGATATACATTCCAGTGATAAACATGGAGAAGAACTCAGTAGATCAATATCTGAG
GAACAGGCATCATCAACAAAATATGGTTTGTGTGACAATATTATAAATGGTGACAGTGGTAGTAACTGTGCACCATTGTGTCATAAAAAAAGCAAACTTGAACGTACAGTTTCCTCTGGAGTTGAAGGTTCACATTCAGCTGGAGCTTCCACTGTAAAGGAACAGACACATTCTTCGCAAGGCAGTTTTATTCTTTCTGT
TAAGAAGTGTGTTAAGACAGGCAGTGACTTGCAAAATCTCTCATCAAAGAGTATCTCCATGAAAAGGAGGCTTTTGGACAACACTAACTCAGGTAGCGGAAGCTTTCTTGCTTGCAACAAATCTACTTCAAAGGAGTTATTTCAGGACCATGCTGCCTCTAAAACAAGTAATACTGGTGATCAAAGTGAAAATGATTCTG
ATTCTGAGGCATTTATTGTGAAAAGACGGCGCATAGTAACTCAGAAGGGAATCTTGGTGCAAAATATCACAAATTTGGAAAACACTAAACAATATTTGGCTGGGACATCTGCCACTAAATGTAGCGTTCCCAAGAGTGCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTGATGGTCACCGT
GTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGGTCTTGAATGGGTGGCAGTCAAAGGGTATCTCTAGAGGGTTGGATTTGAAGGCTCATCGAGTTGATATTCAGTGCACTGCTAGTATTGATATGATTAAGGACTATGCATGTTGGGGATTATCATGTCAGGGTTGCATATC
GCTAAAGCAAATTTTGCCAAAAGCAGAAGCTTGCAAACTAGAGCAATTGGTAGAAAGTGTATTTGGCAAGTCAGCGTCAACCATAAATTCTGCAGTTTTTGCTGAAAAATTTAAAGACACCAGTAGCATAAGCAGCAAAAAAGGAGCTTATGATACAATGAACGAGGCTAATGATTCTGAGATTACTAAGAGCTCAGGTG
CTAAATATAATACTGGCACACTGAAGGCATCCTTGAAATATAATTGCTTTTCAGAAATAAAAAATGGAAACAATCATGACAAAGAGTCCTATGTGAGAGGGTCCCAAGAAGTTGAATATTATGATAACAAGCAAGATAATGAATATAACCAAAAAACAAATCAAGCACACTCACTGTCTTTTGTTAATCCGCAAGAGCAG
AGCGCAATATGCAAGCCAGTTTCAAAGCACTCACCCAAAATAGCCTGTCATGCAAATCAAGAAATTACCACACAAGTTGAAGGTTCTTTTAGGAAAGGAACTTGTGGCCATTCTGGTATAGAGACTAACAAAACAGTACCCAGGGTTAGTCGATTGAAAGTAAAAGGTCCATCTCTTCCTGGCAGTTCTAAAACTCTTTC
TTCAGTAGAAAGTGAAGTCCATCACACTAATACTGGTTTTGACATTATCCAAGCTGCCAATTCGTCCAGCAATAATATAACTTCATTACCAAAGAGTAACCCTTCTATGGAAGATAAAGGCCTGCAGATATCAACTCAGGATTACGTCATTTGCAGTGACAGCCAGTCACCCATGCAAGGATATCTTGATATGAATAAGA
GCAAGCTGAAGAAGGGAAATGAAGAGCCAAGGAAATTAAGGAGTATAAACAATTTGTCGGTAGATTTTAAGTCAGAGGCAACTTCAAATGTACCACAATATTTGACATTTGACAATGTAGGAAAAGAAAAGTCTTTTCAGAATCTGCAGGGTGTAATTCATCAGGAGGGACCAACTGAGACAATTTTGAAATCAGTAAGA
GATTCTCATTCTAAAGTTTTGGGTCCCACTTCCAGTAAAGGTGTCCACAATGGTCAGAACATTTTGAATAACTGCCATTCAACTCTTGAAAGGGAATGCAGCACTGCTCATTCAGGCGACTCTGGCATACTTCTCAGAATACCCTCCGGAGTAATAGTCCCTACAGGTCCTTGTGGCATTCAGAATAGCAGCACAGGTTT
TGTAAGTAGTGAAAATGTTACAAATAAACAGGTTGCTCCAATGGCAGACCTTGTTGATGACTCTAACATAGAAATTGGCCTAAGAAGAAATGATGGTCTTCAAAATCAAGCAAATATGTCAAGATCTGAACACAATGCTGAGAGACCTGCCGTTGAGAAACTGCCCAAAAGAATGGGATCTCCAGATAAACTGTTCACAG
AGGTCTCTCATCATAGTTTTTGCAATATTGAAGATTCAATGAAAAGTCCACTTATTGATTTCCCCGAAGACTTGCTCGAAAGCAAGGACAGTATGAAGCAACAGAATAGTTTTATCCAGTCAAGGCATGACTGCTACTTGTCTCAGATCAATGAGCAAGAAGTTTCTTCTAGATCTAGGGATTTAAATGATGATGTAGGT
TTGGGTCAGCAATCCAAATCATGCAGAAACAGTTTAAGAGATGCGACTCAGGTGGCACCTGATGAAGGCCAGAGTTCATGTGGAAGATCTGAAAACAACATTGGTGAAAGATTTGCTTTAAGTACCGGACCTATAACCAATAACAAGGTTTCATTTTGCAATAGTTTAGATGTACTACATCAGACTGAATCGGTGGGAAG
TTTCCTTTCATGGCACACAAATCTTATCAGTTTGTCTGGAAAAGCAGGGGATATTAACTCAAAAGGCAGGGGAGGAAGCTTTGTGCTATTCAATGAAGACAAAAGCAGCTCCCATACCAATCACTTGGTTCATCATTCGAATCTGGATTGCACCAAGGAAATAAAGGGACCAAATGAAGTCATTGATGATGACCATCCCT
TACAGATGCGTTCTGCCCAAGGCTATCATCCACATCAAAGAGACGATTTCCAGACATATGCGAATAGAAAGGAAGAAAAGGTGGACTATACTTATCTGAATGATTTACCCCAGGGCAGAGACAATGTTCAAGCTTCCGAGGCTGGCGAAACTTCAAATGATTCTCAAACCAATTCTGCATGCAGGAACAAGTCGGAATGC
ATTCAGAATCGGATTCTCATTGAAAAGGATGATTGCCGATTCTAGTCAAGCTTGCATCAGAAAGGTATGTTAACAGGGAAATCTTATGGTGTACTAAGAGTTAATTCAAGGGTCTACAGTTCTTGAAATCGCAAAAGAGCCCATTTTGTATTGGGATTTGGCCAAGCAATCACACACGAGGAAGGAAATAAAACCATCTT
CACTGGAAGCTGAAACCCAGCATTCTGTTTAGCAGTATAGTATTTGTAGGTGGCAATGGCATGATCTTACTCCAATAAATGGTGAATAAAAAATGCAAGAGGCATACATATCAAAGCAGTGTTATTGTTAACATAGCAACCAAGTGAAGTCACCCGACCAAAGTCTACCAATTGATTGGTGGGTGAGTTCTGGAAACATG
TTACTGGTTGGCTTTAATGAGATTAGCTTGAACGTCAGGTTCAGGTTTAATTTCCATAGATCAACTTGTTTAGTCAGGTCACAGTCTGAGATTGCGATTCACTCTACAAACGGTTTGCATTCCTAACTTCAATCCGCAAACAGTTTCTCATGGACTATTAGCAGTGCCATCAGAGGTAACATTATCTCATGAGCACTGTC
TTGAGCTAACGAATTTAGAAGCAGGACCATAACATTTGATTTCGGGCGGTTCAAGATAGTAGTAAATGCAATGGGCCAGTTTGTACAATATTGTCAATTGCTTCTTTCATTTGTATTGACAGGCGGCATTTCCCTGTCTATTGTATTTCTGCCTGCATTTTTAGGTCATTCTTGGGGTCAAATTCTTTATTCTTTTACAC
TGCTGCAGCACTTGGATGTGAATAATTACAGTGATGTAAATCACGTGAGAGAGCTGGCAGCCTGTATTCATCCTGGCAGTGAGGCTAAACAAAATTGGAGCAAAGCTTTACTGTCTCTTCAAGCTTTTCTTTTAGCACTTAAATTCTGGAATTGGAGATCCCCATATTCATTAACAAGATTCTTGTAGAATTGGCCCTTG
GATATTATTAGTGAATTTTCTTGACTAGAGGTAAATTTCATGGGTATTTGCCAAATAATGTTTCGTATATTGCAGGTTGTTTTGCATTAGTTTGGCTATTAAATGTTCCCTTCTGATAATGTCGCAGACATGCTAATAGATTATGATTTCCTTGCCATCATGAAGTTTCTTTCTTTAAAGGTCTCAGAATATAACGGTGA
AATAAGATCTTTCATTCCACTAAGCCTTGAATAATATTATCTACAAGATAAGTTGGTGCTATTTTCCTTGCCCAAAAAATTTATTGTCTCTGATTCTGTCTCGAAATCTCAAATTGGATCAGCA
>TRINITY_DN117733_c0_g1_i6 from sample A3 / Example unspliced isoform:GGAAAACACTAAACAATATTTGgtatgggtgatactcaagtgaattatgctgccaatcatccaatccatgaaatatagccactgtttcttccctttgtgcttactattttataccattgaatgcatttattttgttaaataagcatttttagatgaaggagcttacatggtgaactttaatgaaacagGCTGGGACATCT
GCCACTAAATGTAGCGTTCCCAAGAGTGCATGTGCACTAGAACATAGAAGAAGGATGTTTAGTGCATGTCAAACTTCTGATGGTCACCGTGTACTGCTTCTTTCAGATCTTTTTCATGAACTAGAAGTGAAAGATTCTGCTGCCCCTAAGGTCTTGAATGGGTGGCAGTCAAAGGGTATCTCTAGAGGGTTGGATTTGAA
GGCTCATCGAGTTGATATTCAGTGCACTGCTAGTATTGATATGATTAAGGACTATGCATGTTGGGGATTATCATGTCAGGGTTGCATATCGCTAAAGCAAATTTTGCCAAAAGCAGAAGCTTGCAAACTAGAGCAATTGGTAGAAAGTGTATTTGGCAAGTCAGCGTCAACCATAAATTCTGCAGTTTTTGCTGAAAAAT
TTAAAGACACCAGTAGCATAAGCAGCAAAAAAGGAGCTTATGATACAATGAACGAGGCTAATGATTCTGAGATTACTAAGAGCTCAGGTGCTAAATATAATACTGGCACACTGAAGGCATCCTTGAAATATAATTGCTTTTCAGAAATAAAAAATGGAAACAATCATGACAAAGAGTCCTATGTGAGAGGGTCCCAAGAA
GTTGAATATTATGATAACAAGCAAGATAATGAATATAACCAAAAAACAAATCAAGCACACTCACTGTCTTTTGTTAATCCGCAAGAGCAGAGCGCAATATGCAAGCCAGTTTCAAAGCACTCACCCAAAATAGCCTGTCATGCAAATCAAGAAATTACCACACAAGTTGAAGGTTCTTTTAGGAAAGGAACTTGTGGCCA
TTCTGGTATAGAGACTAACAAAACAGTACCCAGGGTTAGTCGATTGAAAGTAAAAGGTCCATCTCTTCCTGGCAGTTCTAAAACTCTTTCTTCAGTAGAAAGTGAAGTCCATCACACTAATACTGGTTTTGACATTATCCAAGCTGCCAATTCGTCCAGCAATAATATAACTTCATTACCAAAGAGTAACCCTTCTATGG
AAGATAAAGGCCTGCAGATATCAACTCAGGATTACGTCATTTGCAGTGACAGCCAGTCACCCATGCAAGGATATCTTGATATGAATAAGAGCAAGCTGAAGAAGGGAAATGAAGAGCCAAGGAAATTAAGGAGTATAAACAATTTGTCGGTAGATTTTAAGTCAGAGGCAACTTCAAATGTACCACAATATTTGACATTT
GACAATGTAGGAAAAGAAAAGTCTTTTCAGAATCTGCAGGGTGTAATTCATCAGGAGGGACCAACTGAGACAATTTTGAAATCAGTAAGAGATTCTCATTCTAAAGTTTTGGGTCCCACTTCCAGTAAAGGTGTCCACAATGGTCAGAACATTTTGAATAACTGCCATTCAACTCTTGAAAGGGAATGCAGCACTGCTCA
TTCAGGCGACTCTGGCATACTTCTCAGAATACCCTCCGGAGTAATAGTCCCTACAGGTCCTTGTGGCATTCAGAATAGCAGCACAGGTTTTGTAAGTAGTGAAAATGTTACAAATAAACAGGTTGCTCCAATGGCAGACCTTGTTGATGACTCTAACATAGAAATTGGCCTAAGAAGAAATGATGGTCTTCAAAATCAAG
CAAATATGTCAAGATCTGAACACAATGCTGAGAGACCTGCCGTTGAGAAACTGCCCAAAAGAATGGGATCTCCAGATAAACTGTTCACAGAGGTCTCTCATCATAGTTTTTGCAATATTGAAGATTCAATGAAAAGTCCACTTATTGATTTCCCCGAAGACTTGCTCGAAAGCAAGGACAGTATGAAGCAACAGAATAGT
TTTATCCAGTCAAGGCATGACTGCTACTTGTCTCAGATCAATGAGCAAGAAGTTTCTTCTAGATCTAGGGATTTAAATGATGATGTAGGTTTGGGTCAGCAATCCAAATCATGCAGAAACAGTTTAAGAGATGCGACTCAGGTGGCACCTGATGAAGGCCAGAGTTCATGTGGAAGATCTGAAAACAACATTGGTGAAAG
ATTTGCTTTAAGTACCGGACCTATAACCAATAACAAGGTTTCATTTTGCAATAGTTTAGATGTACTACATCAGACTGAATCGGTGGGAAGTTTCCTTTCATGGCACACAAATCTTATCAGTTTGTCTGGAAAAGCAGGGGATATTAACTCAAAAGGCAGGGGAGGAAGCTTTGTGCTATTCAATGAAGACAAAAGCAGCT
CCCATACCAATCACTTGGTTCATCATTCGAATCTGGATTGCACCAAGGAAATAAAGGGACCAAATGAAGTCATTGATGATGACCATCCCTTACAGATGCGTTCTGCCCAAGGCTATCATCCACATCAAAGAGACGATTTCCAGACATATGCGAATAGAAAGGAAGAAAAGGTGGACTATACTTATCTGAATGATTTACCC
CAGGGCAGAGACAATGTTCAAGCTTCCGAGGCTGGCGAAACTTCAAATGATTCTCAAACCAATTCTGCATGCAGGAACAAGTCGGAATGCATTCAGAATCGGATTCTCATTGAAAAGGATGATTGCCGATTCTAGTCAAGCTTGCATCAGAAAGGTATGTTAACAGGGAAATCTTATGGTGTACTAAGAGTTAATTCAAG
GGTCTACAGTTCTTGAAATCGCAAAAGAGCCCATTTTGTATTGGGATTTGGCCAAGCAATCACACACGAGGAAGGAAATAAAACCATCTTCACTGGAAGCTGAAACCCAGCATTCTGTTTAGCAGTATAGTATTTGTAGGTGGCAATGGCATGATCTTACTCCAATAAATGGTGAATAAAAAATGCAAGAGGCATACATA
TCAAAGCAGTGTTATTGTTAACATAGCAACCAAGTGAAGTCACCCGACCAAAGTCTACCAATTGATTGGTGGGTGAGTTCTGGAAACATGTTACTGGTTGGCTTTAATGAGATTAGCTTGAACGTCAGGTTCAGGTTTAATTTCCATAGATCAACTTGTTTAGTCAGGTCACAGTCTGAGATTGCGATTCACTCTACAAA
CGGTTTGCATTCCTAACTTCAATCCGCAAACAGTTTCTCATGGACTATTAGCAGTGCCATCAGAGGTAACATTATCTCATGAGCACTGTCTTGAGCTAACGAATTTAGAAGCAGGACCATAACATTTGATTTCGGGCGGTTCAAGATAGTAGTAAATGCAATGGGCCAGTTTGTACAATATTGTCAATTGCTTCTTTCAT
TTGTATTGACAGGCGGCATTTCCCTGTCTATTGTATTTCTGCCTGCATTTTTAGGTCATTCTTGGGGTCAAATTCTTTATTCTTTTACACTGCTGCAGCACTTGGATGTGAATAATTACAGTGATGTAAATCACGTGAGAGAGCTGGCAGCCTGTATTCATCCTGGCAGTGAGGCTAAACAAAATTGGAGCAAAGCTTTA
CTGTCTCTTCAAGCTTTTCTTTTAGCACTTAAATTCTGGAATTGGAGATCCCCATATTCATTAACAAGATTCTTGTAGAATTGGCCCTTGGATATTATTAGTGAATTTTCTTGACTAGAGGTAAATTTCATGGGTATTTGCCAAATAATGTTTCGTATATTGCAGGTTGTTTTGCATTAGTTTGGCTATTAAATGTTCCC
TTCTGATAATGTCGCAGACATGCTAATAGATTATGATTTCCTTGCCATCATGAAGTTTCTTTCTTTAAAGGTCTCAGAATATAACGGTGAAATAAGATCTTTCATTCCACTAAGCCTTGAATAATATTATCTACAAGATAAGTTGGTGCTATTTTCCTTGCCCAAAAAATTTATTGTCTCTGATTCTGTCTCGAAATCTC
AAATTGGATCAGCA