sp|Q9SXX7|COX5C_ORYSJ ----> Cytochrome c oxidase subunit 5C

Intron 1 GTCAGTTTAA ... ACATGTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	54.19	142	168	6
A2	55.01	256	313	1
A3	57.59	246	334	1
A4	58.14	126	175	0
A5	55.69	152	191	1
A6	57.36	3027	4072	4
A7	56.83	2407	3168	0
A8	57.39	1995	2687	0
A9	56.87	2734	3605	0
A10	57.53	1751	2372	0

>TRINITY_DN105078_c0_g1_i1 from sample A2 / Example spliced isoform

AAAAGAAACACATGTTTTCGACCATAAAACCAGTCTACCCAATTAAAATAATAATAATAATAATTATGTAAGGTAGACTGGTCCGTGGTGCGTCCATTTGCAATTTGAACGAGAGAACCATAAAACACTATAACTAGAATTAAAATAATAATAATTATATAAGGGTAGACTGGTCCGTGGTTCGTCCATTTGCATTTTGC
ACGAGGACAAGGAGAAAGCGAGGAAAGGAAAAATGCCTGCTCACAATTTGGCTGCGACCATGGCTTCCAAGGCCTCGCCCAGCGTGGTGAAGGAAATTTGCTATGGCTTCACCCTCGGCCTCTTCGATGTGTTACCTTTCACTAACAACGGGATCTCATCATATGTCTGAAATGCTGGATATCAAACAAAACCTGCTGGC
GGTCTCTGGAAAATGCATCAGTGGAGCGAGCAACGAAGGACTAGGGAGTTCTATGACTTGCTGGAGAGAGGGGAGATCTCAGTTGTGGTGGCTGAAGAATAAATTCATTATATTGTCAGCATATTTTAAAGTACATTCTAAAGCTACCAAATTTCCGAGCCAATGGCAGGATGCATTAAATTCTCAATACATTTAATCTT
TAAAATTTGTCATAGTCGTTGACTTGGTTGAATTATTTTTTGGAGAAAGTTCAAGCATCATTTTCATCAAGTTGTTTCTAAATGGAGCACAAGAGTGGAAAATAAAATTTTCTTTGATTCTGTGTTAAAAAA

>TRINITY_DN105078_c0_g1_i2 from sample A2 / Example unspliced isoform:

AAAAGAAACACATGTTTTCGACCATAAAACCAGTCTACCCAATTAAAATAATAATAATAATAATTATGTAAGGTAGACTGGTCCGTGGTGCGTCCATTTGCAATTTGAACGAGAGAACCATAAAACACTATAACTAGAATTAAAATAATAATAATTATATAAGGGTAGACTGGTCCGTGGTTCGTCCATTTGCATTTTGC
ACGAGGACAAGGAGAAAGCGAGGAAAGGAAAAATGCCTGCTCACAATTTGGCTGCGACCATGGCTTCCAAGGCCTCGCCCAGCGTGGTGAAGGAAATTTGCTATGGCTTCACCCTCGGCCTCTTCGgtcagtttaaatcaatctctaattttttttcctttccttgaaaagaaatcttgcaagagcccttgtagcattga
ttttatggaaacatgttcagATGTGTTACCTTTCACTAACAGCGGGA