sp|O22769|NDUV2_ARATH ----> NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Intron 1 GTCTGCAAAA ... TTGTATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.43 | 59 | 75 | 50.3 |
| A2 | 55.84 | 28.5 | 36 | 15.6 |
| A3 | 46.88 | 54.5 | 48 | 28.3 |
| A4 | 47.96 | 41.5 | 38 | 39.4 |
| A5 | 45.97 | 29.5 | 25 | 20.3 |
| A6 | 58.95 | 30 | 43 | 16 |
| A7 | 45.34 | 104 | 86 | 31.8 |
| A8 | 48.22 | 70 | 65 | 25.3 |
| A9 | 47.09 | 81 | 72 | 29.3 |
| A10 | 36.57 | 83.5 | 48 | 38.3 |
>TRINITY_DN124316_c4_g1_i18 from sample A2 / Example spliced isoformAAAAAAACAATTCCAAGCCTCGGTTATTCAGTTTTTTCACTCAAATATATAGGTTAAATTCGAGTCCGTAGAGGGGCTTGTTCAACCCCAAAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAAC
CTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTTTGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCGGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACA
AACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGGTGTTGCATTGGTCCCTGATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGCTTACGAGGCAAGAGTTCGCAGGGTTC
CCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGGAGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCG
GAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAG
CCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTGGATTCATTTGCAGCAAACACCTAA
CAGTATCCCAGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCTCATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGA
AAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATTGGATGAAGTTGAGGAGGATATCCTTCTTCCAGGATTGTGCAAGCT
GTTAGAAAGCTGGCTGACAGAGATAGTCTTCCC
>TRINITY_DN124316_c4_g1_i21 from sample A2 / Example unspliced isoform:AAAAAAACAATTCCAAGCCTCGGTTATTCAGTTTTTTCACTCAAATATATAGGTTAAATTCGAGTCCGTAGAGGGGCTTGTTCAACCCCAAAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAAC
CTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTTTGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCGGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACA
AACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGGTGTTGCATTGGTCCCTGATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGCTTACGAGGCAAGAGTTCGCAGGGTTC
CCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGGAGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCG
GAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAG
CCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGgtctgcaaaagacctgttttgagaagt
tagcgttgtgttaattcagggtatgagaagggtttattgtagctttttgtgaggtcttttttagacctctccaatgatgttaactctctttgtattcttgcccatttttggttgtaaaacacagtttggtctctaggcatggtcactcctgggctctaagcaatctgtttatttgcatttttcttgtgatattacattat
taagaggttaggttgctataatatttcattaatatttttcttattttgtataaagGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCTCATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCA
GCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACA
GGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATTGGATGAAGTTGAGGAGGATATCCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCC
Intron 2 GTCTGCAAAA ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.55 | 43.2 | 102 | 92.5 |
| A2 | 76.29 | 25.4 | 82 | 78.6 |
| A3 | 73.58 | 31.1 | 82 | 85.6 |
| A4 | 74.35 | 28 | 78 | 80 |
| A5 | 67.48 | 24.4 | 57 | 43 |
| A6 | 70.94 | 27 | 63 | 66.3 |
| A7 | 69.7 | 75.2 | 176 | 163.2 |
| A8 | 67.99 | 46 | 99 | 93.9 |
| A9 | 69.89 | 49.5 | 116 | 110.5 |
| A10 | 73.71 | 43.4 | 116 | 122.2 |
>TRINITY_DN134642_c0_g1_i6 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCA
GGA
>TRINITY_DN134642_c0_g1_i1 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGgtctgcaaaagacctgttttgagaagttagcgttgtgttaattcagggtggattcatttgcagcaaacacctaacagtatcccagctgaaagttttgaaatttatgtcagttcttgct
catattgcagAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAAT
GTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGA
CACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGG
GTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGG
GCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACC
CTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACA
AGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCC
ACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACT
TGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATTCCGTAGGCGA
AATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAA
ATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTC
ATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATC
TGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTATATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTT
GTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATC
AGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTATAATTAAAACTAAGTAAAA
Intron 3 GTATGAGAAG ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.81 | 66 | 51 | 80 |
| A2 | 58.87 | 29 | 27 | 56 |
| A3 | 66.67 | 31 | 38 | 86 |
| A4 | 71.43 | 21 | 25 | 80 |
| A5 | 54.67 | 17 | 10 | 31 |
| A6 | 61.97 | 27 | 33 | 55 |
| A7 | 66.82 | 37 | 33 | 116 |
| A8 | 67.09 | 26 | 41 | 65 |
| A9 | 66.46 | 27 | 40 | 67 |
| A10 | 63.93 | 33 | 30 | 87 |
>TRINITY_DN134642_c0_g1_i16 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACA
AATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGA
>TRINITY_DN134642_c0_g1_i26 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGgtatgagaagggtttattgtagctttttgtgaggtcttttttagacctctccaatgatgttaactctcttt
gtattcttgcccatttttggttgtaaaacacagtttggtctctaggcatggtcactcctgggctctaagcaatctgtttatttgcatttttcttgtgatattacattattaagaggttaggttgctataatatttcattaatatttttcttattttgtataaaggtggatttatttgcggcaacacctaacagcatccca
gctgaaagttttgaaatttatatggcagctcttgctcatattgcagAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGATTTAGACTTCGCTCTTGAAAGAGGAATGTGTTC
ATTGTTATTGGGAGAGCTAGATGATTGTCGTGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCATCTATTGTTGATTTTATTCTGGCAAACTCGGATGAAGCTGAGGAGGATATGCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATG
AGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATG
GGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAAT
GGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGG
CTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGG
AAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAG
GGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGA
CTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGT
Intron 4 GTCTGCAAAA ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.75 | 43.6 | 75 | 89.7 |
| A2 | 63.75 | 25.4 | 36 | 51.3 |
| A3 | 67.94 | 31.2 | 48 | 79.3 |
| A4 | 69.68 | 27.9 | 38 | 86 |
| A5 | 54.09 | 24.6 | 25 | 32 |
| A6 | 65.58 | 27.1 | 43 | 58.3 |
| A7 | 59.85 | 75.4 | 86 | 133.3 |
| A8 | 60.01 | 46.1 | 65 | 71.3 |
| A9 | 61.12 | 49.4 | 72 | 80.7 |
| A10 | 64.11 | 43.7 | 48 | 103.7 |
>TRINITY_DN134642_c0_g1_i6 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCA
GGA
>TRINITY_DN134642_c0_g1_i31 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGgtctgcaaaagacctgttttgagaagttagcgttgtgttaattcagggtatgagaagggtttattgtagctttttgtgaggtcttttttagacctctccaatgatgttaactctcttt
gtattcttgcccatttttggttgtaaaacacagtttggtctctaggcatggtcactcctgggctctaagcaatctgtttatttgcatttttcttgtgatattacattattaagaggttaggttgctataatatttcattaatatttttcttattttgtataaaggtggattcatttgcagcaaacacctaacagtatccc
agctgaaagttttgaaatttatgtcagttcttgctcatattgcagAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCA
TTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAG
CTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAG
TGCCATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCC
AAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACT
ACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATG
TTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTT
TGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAA
CATTCCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCA
GAGGTAACCAAGGATGGCATGTATTCCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATA
TTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGT
GAACCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGT
AAATGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTAT
ATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACAC
TAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTAT
AATTAAAACTAAGTAAAA
Intron 5 GTAAATGCCT ... TATGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 93.2 | 5 | 104 | 33 |
| A2 | 87.39 | 7 | 69 | 28 |
| A3 | 87.5 | 5 | 52 | 18 |
| A4 | 96.49 | 1 | 41 | 14 |
| A5 | 93.33 | 1 | 19 | 9 |
| A6 | 83.45 | 36 | 240 | 123 |
| A7 | 92.21 | 18 | 302 | 124 |
| A8 | 86.83 | 53 | 439 | 260 |
| A9 | 86.11 | 35 | 279 | 155 |
| A10 | 90.21 | 16 | 204 | 91 |
>TRINITY_DN124316_c4_g1_i22 from sample A2 / Example spliced isoformGTTTCCTGGATTTATAGCCTCTGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCAT
TGATGTCTAAAC
>TRINITY_DN124316_c4_g1_i5 from sample A2 / Example unspliced isoform:AAAAAAACAATTCCAAGCCTCGGTTATTCAGTTTTTTCACTCAAATATATAGGTTAAATTCGAGTCCGTAGAGGGGCTTGTTCAACCCCAAAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAAC
CTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTTTGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCGGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACA
AACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGGTGTTGCATTGGTCCCTGATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGCTTACGAGGCAAGAGTTCGCAGGGTTC
CCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGGAGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCG
GAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAG
CCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGAAGGTTTTGTTGGAAAAAGGCCTCACC
TGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGG
GCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATTGGATGAAGTTGAGGAGGATATCCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATGAGGTCTGACATTCAATCTCAGAGATTATTGT
GATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATG
CTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAG
ATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAA
AGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTG
CCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTG
TATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCT
TAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATTCCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATG
ATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGTTGGGACACAAAATCCAGATCGTATTATATCAGGTCCAGCTGGCGGCCACACGACATTACTTTAGTGAAACCAAAGCCTCCACTGTGCCATGACTTAGATTCATGTTGATGTGGCACAATTTTAAATGTTTTATTGTCAATACAA
TAACTTACAATATTTATGCAATTTGTCCAGTTCCTGTGAACACAAGTATCTGCAAAATAAAACAGTCAGGGACTTAATTGGGAAAACTCTTAGAAGTGTTTCCTGGATTTATAGCCTCTGgtaaatgcctgaatttcactgctccaaattcagtatctgaatatattgctatttatcctctgtctttcccataaaccagt
tcatgctattggttttatatctaccaagataccttcaaattcgacatgaaatcttggtgaattcaagtgaggaactatacattttagcaccttgacagggaatcataaaaaaattgttttatatgttgcagTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTT
CAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGT
TCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTCCCAAG
Intron 6 GTGGATTCAT ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.31 | 56.4 | 92.2 | 88.8 |
| A2 | 68.15 | 28.6 | 58.6 | 68.5 |
| A3 | 71.69 | 33.6 | 77.4 | 88.6 |
| A4 | 72.57 | 27.5 | 66.1 | 78.1 |
| A5 | 66.16 | 20.6 | 41 | 39.7 |
| A6 | 65.99 | 27.9 | 48.3 | 60.8 |
| A7 | 72.17 | 59.7 | 144.1 | 158.9 |
| A8 | 70.34 | 37.6 | 90.1 | 87.2 |
| A9 | 71.83 | 40.5 | 102.5 | 102.6 |
| A10 | 74.84 | 40.5 | 117.5 | 121.7 |
>TRINITY_DN134642_c0_g1_i16 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACA
AATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGA
>TRINITY_DN134642_c0_g1_i24 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGgtggattcatttgcagcaaacacctaacagtatcccagctgaaagttttgaaatttatgtcagttcttgct
catattgcagAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAAT
GTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGA
CACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGG
GTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGG
GCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACC
CTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACA
AGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCC
ACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACT
TGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATTCCGTAGGCGA
AATGGAGTGTATGGTAAGATGGAGTGTGCTAGTTTTACTTTCCACCCTTGTGAGAAAAAGTTGGCATTTATTTTAATAGGTTGGTTTGATGTTCCAGCTTCATTGCATGGTACTTTATTGTTTGGTTGTTTCCCAGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTA
CATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCT
GAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCC
TGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCT
TCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTATATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGT
TGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTC
TTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTATAATTAAAACTAAGTAAAA
Intron 7 GTAATGCTGT ... TCTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.14 | 6 | 1 | 8 |
| A2 | 56.25 | 7 | 0 | 9 |
| A3 | 60 | 8 | 3 | 12 |
| A4 | 50 | 7 | 3 | 7 |
| A5 | 50 | 5 | 0 | 5 |
| A6 | 71.05 | 22 | 3 | 54 |
| A7 | 60.14 | 57 | 3 | 86 |
| A8 | 65.13 | 53 | 1 | 99 |
| A9 | 53.64 | 51 | 4 | 59 |
| A10 | 69.66 | 27 | 6 | 62 |
>TRINITY_DN42080_c0_g4_i2 from sample A9 / Example spliced isoformATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGTTGGGACACAAAATCCAGATCGTATTATATCAGGTCCAGCTGGCGGCCACACGACATTACTTTAGTGAAACCAAAGCCTCCACTGTGCCATGACTTAGATTCATGTTGATGTGGCACAATTTTAAATGTTTTATTGTCAATACAA
TAACTTACAATATTTATGCAATTTGTCCAGTTCCTGTGAACACAAGTATCTGCAAAATAAAACAGTCAGGGACTTAATTGGGAAAACTCTTAGAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTTTCTCATTATATTGCTATTTATCCTCGGTCATTCCCATAAGCCATT
TCATACTATTGGTTTTATTTCTACCAAGATACCTTGAAATTCGATATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTGTAGCAACTTGACAGGGAATCATCAAAAAAGTGTTT
>TRINITY_DN42080_c0_g4_i1 from sample A9 / Example unspliced isoform:TTACATACAACTACTATgtaatgctgtcattttatgtgcactatatagatgttcttatcattatgtctatatagcatccttaaagttaggatcatgtttatttcaatgaacttttccatggtttgtgttactgtttttaatgtaacaaggaggatgttacaccaaagcgtgttgttgagatggttgagatgcagaggcgg
gggaaaactcctccagcaagcttaaataatattccttactctttttcatcatgttttccaagagaaatagccagcttttaagtcaatcatgccttttcttttacagGTTGGGACACAAAATCCAGATCGTATTATATCAGGTCCAGCTGGCGGCCACACGACATTACTTTAGTGAAACCAAAGCCTCCACTGTGCCATGA
CTTAGATTCATGTTGATGTGGCACAATTTTAAATGTTTTATTGTCAATACAATAACTTACAATATTTATGCAATTTGTCCAGTTCCTGTGAACACAAGTATCTGCAAAATAAAACAGTCAGGGACTTAATTGGGAAAACTCTTAGAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAA
TTCAGTTTCTCATTATATTGCTATTTATCCTCGGTCATTCCCATAAGCCATTTCATACTATTGGTTTTATTTCTACCAAGATACCTTGAAATTCGATATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTGTAGCAACTTGACAGGGAATCATCAAAAAAGTGTTT
Intron 8 GTGTGCCCAC ... GGAGTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.59 | 89 | 18 | 20 |
| A2 | 24.36 | 59 | 15 | 23 |
| A3 | 27.85 | 79 | 36 | 25 |
| A4 | 24.03 | 49 | 13 | 18 |
| A5 | 17.86 | 46 | 13 | 7 |
| A6 | 10.26 | 35 | 4 | 4 |
| A7 | 19.22 | 103 | 26 | 23 |
| A8 | 20 | 32 | 5 | 11 |
| A9 | 21.65 | 76 | 15 | 27 |
| A10 | 12.65 | 107 | 19 | 12 |
>TRINITY_DN124316_c4_g1_i17 from sample A2 / Example spliced isoformAAAAAAACAATTCCAAGCCTCGGTTATTCAGTTTTTTCACTCAAATATATAGGTTAAATTCGAGTCCGTAGAGGGGCTTGTTCAACCCCAAAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAAC
CTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTTTGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCGGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACA
AACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGGTGTTGCATTGGTCCCTGATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGCTTACGAGGCAAGAGTTCGCAGGGTTC
CCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGGAGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCG
GAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAG
CCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGAAGGTTTTGTTGGAAAAAGGCCTCACC
TGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGG
GCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATTGGATGAAGTTGAGGAGGATATCCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCAAGGTTCAAGGATACACGAGGGCTGAAATTCAAGCTCAGAGATTATTA
TGATGATTGTACTGTCTTAAGCTATTTGGAAAGGTTGGAAAAGGGCAGAGGCTCCCCGTTGGCAGCAGCTGCAGCTATTGTGAGAATTGGAGCTGGGGCTGGGGCTGCCCTTGATAATGTCAAGGCGAGTGCCATTCAGACACTAAAGAAAGTATTCCCTTTGGGTAATGGGCGAGGTGGGAAAGAAGTAAGAGCCCACA
CTGCTCCCGCCATTTCTACAGAAGCACAGTCGACCGTAGACCTGCTTCATAAAGACTATCCTAAGGGTGACATTTACAAGCAACCTATAATGAGTAATGGAGATGTAAGTAATTTATCAGATGCCCCATCTGAAATTGCCAAACCTACAACAGAGAGCTGGTGTGAAAAAAGTGGGCTAATGGGAGATGAAGAATTATTT
CCACTTTCAAAAAAGATCGGTTCTTTTGGTGTGAAGATTATGTGTGCAGGTGTTGTTGTTGGGGTACTTGCTATTGCAGGACTGAGATATTTACCTGTCCAACACAGCTCAACGAAGACTCTGAAGGAAGTTCCATCC
>TRINITY_DN124316_c4_g1_i11 from sample A2 / Example unspliced isoform:AAAAAAACAATTCCAAGCCTCGGTTATTCAGTTTTTTCACTCAAATATATAGGTTAAATTCGAGTCCGTAGAGGGGCTTGTTCAACCCCAAAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAAC
CTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTTTGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCGGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACA
AACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGGTGTTGCATTGGTCCCTGATAGACAATTTACTCTCCCCATTGACTTCTACCAAgtgtgcccacatattctctcttatttttaaaggttttctgtttcatcgttttggataaatctcctggagtatt
tatctacaatgtaatttgaatggagtcgcagGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGCTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGGAGATT
ACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTT
GATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGA
TCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCTCATAT
TGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTT
CATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATTGGATGAAGTTGAGGAGGATATCCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCC
Intron 9 GTAATGCTGT ... ATGTAACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.39 | 121 | 31 | 3 |
| A2 | 18.75 | 91 | 21 | 1 |
| A3 | 12.88 | 115 | 17 | 3 |
| A4 | 18.45 | 84 | 19 | 10 |
| A5 | 14.58 | 41 | 7 | 1 |
| A6 | 13.36 | 402 | 62 | 6 |
| A7 | 16.79 | 555 | 112 | 9 |
| A8 | 11.74 | 594 | 79 | 7 |
| A9 | 12.41 | 586 | 83 | 12 |
| A10 | 15.15 | 465 | 83 | 18 |
>TRINITY_DN106196_c0_g1_i10 from sample A4 / Example spliced isoformCCAGGGAATACTAGTTTGGGTTGGGTTTGAACTGAAAGCATGGTGTGAGGTAAACGTTGGGTTTGAACTGAAAGCATGGTGTGAGGTAAACGCTGGATCCTACATGTCAAACTAAACTTCAAAACAGAGGGTGAAGGGTTCAATTCCCGTCTAGGACCAACAGCAGATCATCGACGAGAAACGAAGATGTTTGGGATCGC
AGAGGTAGCACGCATGGCAGCGGTGAGGCTTAGGGTCAGGGTCAATCCAGGGCTTCGCCATTTATCCACAGCCTTGAATTATCATTTGGACTCTCCGGATAACAACCCCAACGTGCCATGGGAATTCACAGAAGCCAACAAAGAGCGGGTGAAAGAAATAATAACTCACTATCCATCAAATTACAAGCAGTCTGCAGTTA
TTCTTCTTCTGGATCTTGCACAACAACAGCATGGAGGTTGGCTACCCGTATCAGCCATGAATAAGGTTGCAGAGGTTCTTGAAATGGCTCCAATTCGTGTTTTTGAAGTGGCCACATTCTACACTATGTTTAACCGGACAAAGGTGGGTCAATATCATCTTTTAGTCTGTGGTACTACCCCTTGTATGATACGGGGGTCA
TGTGACATTGAAGGGGCAATATTGAAGCACCTTGGTGTAAAACGAAATGAGGTAACCAAAGATGGCATGTTTTCCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCTGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGTTACACCAAAGCGTGTTGT
CGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTA
TGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTT
ATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTATATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTC
AAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGG
>TRINITY_DN106196_c0_g1_i2 from sample A4 / Example unspliced isoform:CCAGGGAATACTAGTTTGGGTTGGGTTTGAACTGAAAGCATGGTGTGAGGTAAACGTTGGGTTTGAACTGAAAGCATGGTGTGAGGTAAACGCTGGATCCTACATGTCAAACTAAACTTCAAAACAGAGGGTGAAGGGTTCAATTCCCGTCTAGGACCAACAGCAGATCATCGACGAGAAACGAAGATGTTTGGGATCGC
AGAGGTAGCACGCATGGCAGCGGTGAGGCTTAGGGTCAGGGTCAATCCAGGGCTTCGCCATTTATCCACAGCCTTGAATTATCATTTGGACTCTCCGGATAACAACCCCAACGTGCCATGGGAATTCACAGAAGCCAACAAAGAGCGGGTGAAAGAAATAATAACTCACTATCCATCAAATTACAAGCAGTCTGCAGTTA
TTCTTCTTCTGGATCTTGCACAACAACAGCATGGAGGTTGGCTACCCGTATCAGCCATGAATAAGGTTGCAGAGGTTCTTGAAATGGCTCCAATTCGTGTTTTTGAAGTGGCCACATTCTACACTATGTTTAACCGGACAAAGGTGGGTCAATATCATCTTTTAGTCTGTGGTACTACCCCTTGTATGATACGGGGGTCA
TGTGACATTGAAGGGGCAATATTGAAGCACCTTGGTGTAAAACGAAATGAGGTAACCAAAGATGGCATGTTTTCCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCTGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATgtaatgctgtcattttatgtgcacta
tatagatgttcttatcattatgtctatatagcatccttaaagttaggatcatgtttatttcaatgaacttttccatggtttgtgttactgtttttaatgtaacaagGAGGATGTTACACCAAAGCGTGTTGTTGAGATGGTTGAGATGCAGAGGCGGGGGAAAACTCCTCCAGCAAGCTTAAATAATATTCCTTACTCTT
TTTCATCATGTTTTCCAAGAGAAATAGCCAGCTTTTAAGTCAATCATGCCTTTTCTTTTACAGGTTGGGACACAAAATCCAGATCGTATTAT
Intron 10 GTCTGCAAAA ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.79 | 44 | 75 | 80 |
| A2 | 66.67 | 23 | 36 | 56 |
| A3 | 71.28 | 27 | 48 | 86 |
| A4 | 73.75 | 21 | 38 | 80 |
| A5 | 52.83 | 25 | 25 | 31 |
| A6 | 65.33 | 26 | 43 | 55 |
| A7 | 59.41 | 69 | 86 | 116 |
| A8 | 60.19 | 43 | 65 | 65 |
| A9 | 61.78 | 43 | 72 | 67 |
| A10 | 62.21 | 41 | 48 | 87 |
>TRINITY_DN134642_c0_g1_i6 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCA
GGA
>TRINITY_DN134642_c0_g1_i26 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGgtctgcaaaagacctgttttgagaagttagcgttgtgttaattcagggtatgagaagggtttattgtagctttttgtgaggtcttttttagacctctccaatgatgttaactctcttt
gtattcttgcccatttttggttgtaaaacacagtttggtctctaggcatggtcactcctgggctctaagcaatctgtttatttgcatttttcttgtgatattacattattaagaggttaggttgctataatatttcattaatatttttcttattttgtataaaggtggatttatttgcggcaacacctaacagcatccca
gctgaaagttttgaaatttatatggcagctcttgctcatattgcagAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGATTTAGACTTCGCTCTTGAAAGAGGAATGTGTTC
ATTGTTATTGGGAGAGCTAGATGATTGTCGTGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCATCTATTGTTGATTTTATTCTGGCAAACTCGGATGAAGCTGAGGAGGATATGCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATG
AGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATG
GGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAAT
GGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGG
CTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGG
AAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAG
GGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGA
CTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGT
Intron 11 GTAATTATAA ... GATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.79 | 42 | 12 | 156 |
| A2 | 90.12 | 17 | 3 | 155 |
| A3 | 82.07 | 33 | 10 | 151 |
| A4 | 79.85 | 27 | 3 | 107 |
| A5 | 85.57 | 14 | 5 | 83 |
| A6 | 79.49 | 24 | 4 | 93 |
| A7 | 81.98 | 60 | 7 | 273 |
| A8 | 78.21 | 34 | 3 | 122 |
| A9 | 85.33 | 38 | 4 | 221 |
| A10 | 87.65 | 40 | 3 | 284 |
>TRINITY_DN45582_c1_g1_i18 from sample A6 / Example spliced isoformGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGA
GGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGC
>TRINITY_DN45582_c1_g1_i5 from sample A6 / Example unspliced isoform:GATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGgtaattataagtttgttctagacttaaatttcatatttcataagtttggctcgtggggtttgtggctttttatgtccaagcccttggaaaaagcttcatgtactaaataacaatttgctatcccacatttgttt
gcgagaattggtaggtggtaacatataaactccatgatttgttatgtcgatgtgggtgagggttttaagtcctctccacacaatggttgatttggcagcttccgggagcactgtgcctgcttcaagaagtgggagaggcggaagttgttattcaggttggacaaaagtttttgcaggagcgtttacccaaatatttcaaa
cgggatgttatgttggcaatggctttgtcttatgttgatatttctcgggaggctatggccgaatcatcaccaaatattatcaagagctgtgaagcactagaaagagcaatgcagattttacagGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTG
TATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGCT
GAAAGTTTTGAAATTTATGTCAGTTCTTGCTCATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAA
TATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGG
CTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCC
ATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAA
CTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAA
TAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAG
TTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCA
TTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATT
CCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGG
TAACCAAGGATGGCATGTATTCCGTAGGCGAAATGGAGTGTATGGTAAGATGGAGTGTGCTAGTTTTACTTTCCACCCTTGTGAGAAAAAGTTGGCATTTATTTTAATAGGTTGGTTTGATGTTCCAGCTTCATTGCATGGTACTTTATTGTTTGGTTGTTTCCCAGGGATGCTGTGTCAATGCTCCAATGATTGCTGTA
GCTGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGTTGGGACACAAAATCCAGATCGTATTATGTCAGGT
Intron 12 GTAATGTTGT ... CTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.76 | 44 | 12 | 7 |
| A2 | 11.61 | 34.3 | 3 | 6 |
| A3 | 16.92 | 27 | 6 | 5 |
| A4 | 22.92 | 21 | 8.5 | 4 |
| A5 | 24.43 | 10.5 | 0.8 | 6 |
| A6 | 16.73 | 81.5 | 14.8 | 18 |
| A7 | 25.25 | 127.3 | 42 | 44 |
| A8 | 25.66 | 123.5 | 44.3 | 41 |
| A9 | 14.73 | 123 | 21.5 | 21 |
| A10 | 22.44 | 84.3 | 16.8 | 32 |
>TRINITY_DN106196_c0_g1_i12 from sample A4 / Example spliced isoformCCCAGCTGAAAGTTTTGAAATTTATACGGCAGCTTTTGCTCATATCGCAGAAGGTTTTCTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAACAAACAAATGGAACTTCCATAGAGATTAGGTAACCAAGGATGGCATGTTTTCCATAGGTGAAATGGAGTGTATGGGGTGATGTGT
CAATACTCCAATGATTGTTGTAGCTGACCACACAAAAGGTTCAAAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCAT
GCCTTTTCTTTTACAGGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTCAAATGTTTTATTGTCAAAGCAATACATTACATACTTTACGCGATTTGTCCAATTCTTGAGAA
CACAAGTATCTGCAAAATAAAACGGTCAGGGATTTAATTGTGAAATATCTTACAAGTGTGTCCTTGATTTATAGCCTGTGGTAAATGCCTGAATTTCAGTGCTTCAAATTCAGTATCTCATTATATTACTATTTATCCTCGGAAATTGCTATTTATCC
>TRINITY_DN106196_c0_g1_i8 from sample A4 / Example unspliced isoform:GTAAGATGGAGTTTGTTAGTTTAATTCTTTCCACTCTTATGAGAAAGTTGGCATTTAGTTTAATAGTTTGTTTTGATGTTCCAGCTTCATTGCATAGTACTTTGTTGTTTGGTTGTTTCCCAGGGGTGATGTGTCAATACTCCAATGATTGTTGTAGCTGACCACACAAAAGGTTCAAAAGGATTTACATACAACTACTA
TgtaatgttgtaattttgtgtattatatagatgttcttatcattatgtctatatagcatcctcaaagttaggattatgtaatttcgataatgttttgatgtttattgcaatgaacttttccatcgttggtgttattgtttttaatgtaatagtacactttgtacagGAGGATGCTACACAAAGCGTGTTGTTGAGATGCT
GAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGT
GTCGTGACTTGGATTCATGTTAATGTGGCACAATTTCAAATGTTTTATTGTCAAAGCAATACATTACATACTTTACGCGATTTGTCCAATTCTTGAGAACACAAGTATCTGCAAAATAAAACGGTCAGGGATTTAATTGTGAAATATCTTACAAGTGTGTCCTTGATTTATAGCCTGTGGTAAATGCCTGAATTTCAGTG
CTTCAAATTCAGTATCTCATTATATTACTATTTATCCTCGGAAATTGCTATTTATCC
Intron 13 GTAAGATGGA ... TGTTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.7 | 88.3 | 28.7 | 42.8 |
| A2 | 27.76 | 64.9 | 24 | 26.1 |
| A3 | 25.74 | 66.3 | 23.3 | 23.4 |
| A4 | 34.96 | 52 | 27.7 | 28.5 |
| A5 | 36.52 | 32.9 | 24 | 13.9 |
| A6 | 24.06 | 209 | 64 | 70.3 |
| A7 | 26.06 | 294.9 | 90.7 | 118.9 |
| A8 | 23.63 | 338.9 | 101.6 | 111.2 |
| A9 | 20.25 | 289.9 | 53 | 96.4 |
| A10 | 21.41 | 273.7 | 69.3 | 82 |
>TRINITY_DN134642_c0_g1_i4 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCT
CATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAAT
GTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGA
CACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGG
GTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGG
GCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACC
CTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACA
AGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCC
ACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACT
TGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATTCCGTAGGCGA
AATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAA
ATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTC
ATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATC
TGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTGTAGCAACTTGACAGGGAATCATCAAAAAATTGTTTTATATGTTGCAATAATTCACTGGGACGAGTGAAATGTT
GTTGCAAGCTATGATTGTACCAGCATGCTCACTAGTATGTCTTAAGTTTTGTATTTGTCCAGGAATGACAACACGTTTGTGGGTTGTTGAGACCAGGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGG
GAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTATAATTAAAACTAAGTAAAA
>TRINITY_DN134642_c0_g1_i24 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCT
CATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAAT
GTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGA
CACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGG
GTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGG
GCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACC
CTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACA
AGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCC
ACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACT
TGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATTCCGTAGGCGA
AATGGAGTGTATGgtaagatggagtgtgctagttttactttccacccttgtgagaaaaagttggcatttattttaataggttggtttgatgttccagcttcattgcatggtactttattgtttggttgtttcccagGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTA
CATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCT
GAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCC
TGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCT
TCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTATATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGT
TGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTC
TTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTATAATTAAAACTAAGTAAAA
Intron 14 GTATGAGAAG ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.83 | 69.3 | 51 | 91.8 |
| A2 | 56.14 | 31.3 | 27 | 52.5 |
| A3 | 62.9 | 35.3 | 38 | 79.8 |
| A4 | 69.25 | 25.3 | 25 | 86 |
| A5 | 54.25 | 17.8 | 10 | 32 |
| A6 | 61.39 | 29 | 33 | 58.8 |
| A7 | 65.6 | 45.5 | 33 | 135 |
| A8 | 65.88 | 30 | 41 | 73 |
| A9 | 66.76 | 31 | 40 | 82.8 |
| A10 | 64.37 | 38.3 | 30 | 105.8 |
>TRINITY_DN134642_c0_g1_i16 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACA
AATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGA
>TRINITY_DN134642_c0_g1_i31 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGgtatgagaagggtttattgtagctttttgtgaggtcttttttagacctctccaatgatgttaactctcttt
gtattcttgcccatttttggttgtaaaacacagtttggtctctaggcatggtcactcctgggctctaagcaatctgtttatttgcatttttcttgtgatattacattattaagaggttaggttgctataatatttcattaatatttttcttattttgtataaaggtggattcatttgcagcaaacacctaacagtatccc
agctgaaagttttgaaatttatgtcagttcttgctcatattgcagAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCA
TTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAG
CTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAG
TGCCATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCC
AAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACT
ACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATG
TTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTT
TGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAA
CATTCCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCA
GAGGTAACCAAGGATGGCATGTATTCCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATA
TTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGT
GAACCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGT
AAATGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTAT
ATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACAC
TAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTAT
AATTAAAACTAAGTAAAA
Intron 15 GTATGAGAAG ... TTGTATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.62 | 93 | 36 | 50 |
| A2 | 21.39 | 79 | 25 | 18 |
| A3 | 25.82 | 79 | 20 | 35 |
| A4 | 31.03 | 80 | 26 | 46 |
| A5 | 22.22 | 49 | 8 | 20 |
| A6 | 26.55 | 65 | 29 | 18 |
| A7 | 16.16 | 166 | 35 | 29 |
| A8 | 25.51 | 92 | 30 | 33 |
| A9 | 21.63 | 96 | 29 | 24 |
| A10 | 18.34 | 138 | 28 | 34 |
>TRINITY_DN46671_c0_g1_i25 from sample A8 / Example spliced isoformGAGAGAAGAGGGTCTTCATGGTGTGAAGAACATCCTATGGGCTGTTGGATGAGGGGGTGTTGTGGCATCTCTGGGACGATTCATTTGAGAGGAATTCATGAATGAAGCTTTATCACATATGACATATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTTATTTGCAGC
AACACCTAACATCATCCCAGCTGAAAGTTTTGAAATTTATACGGCAGCTTTTGCTCATATCGCAGAAGGTTTTCTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCAC
TTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGATCTTGCTCATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAA
ACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGA
TCC
>TRINITY_DN46671_c0_g1_i2 from sample A8 / Example unspliced isoform:GAGAGAAGAGGGTCTTCATGGTGTGAAGAACATCCTATGGGCTGTTGGATGAGGGGGTGTTGTGGCATCTCTGGGACGATTCATTTGAGAGGAATTCATGAATGAAGCTTTATCACATATGACATATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGgtatgagaagggtttat
tgtagctttttgtgaggtcttttttagacctctccaatgatgttaactttctttgttttctttcccatttttggttttcagagtgggctctaggcatgttcactcatgggctctaagcagtctgtttgtttgcatttttcttgtgatattacattattaagaggttaggttgctataatatttcattaatatttttctta
ttttgtataaagGTGGATTTATTTGCAGCAACACCTAACATCATCCCAGCTGAAAGTTTTGAAATTTATACGGCAGCTTTTGCTCATATCGCAGAAGGTTTTCTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAG
TGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGA
Intron 16 GTAATTATAA ... GATTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.74 | 107.4 | 38.8 | 36 |
| A2 | 21.84 | 65.4 | 12.2 | 18 |
| A3 | 28.62 | 85.1 | 29.7 | 33 |
| A4 | 23.81 | 72.8 | 21.3 | 22 |
| A5 | 33.21 | 32.8 | 7.1 | 16 |
| A6 | 28.17 | 68.4 | 16 | 26 |
| A7 | 17.57 | 120.3 | 23.9 | 25 |
| A8 | 19.79 | 63.4 | 15 | 15 |
| A9 | 27.9 | 115.8 | 25.8 | 43 |
| A10 | 25.18 | 120.1 | 18.5 | 40 |
>TRINITY_DN134642_c0_g1_i4 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCT
CATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAAT
GTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGA
CACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGG
GTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGG
GCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACC
CTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACA
AGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCC
ACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACT
TGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATTCCGTAGGCGA
AATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAA
ATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTC
ATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATC
TGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTGTAGCAACTTGACAGGGAATCATCAAAAAATTGTTTTATATGTTGCAATAATTCACTGGGACGAGTGAAATGTT
GTTGCAAGCTATGATTGTACCAGCATGCTCACTAGTATGTCTTAAGTTTTGTATTTGTCCAGGAATGACAACACGTTTGTGGGTTGTTGAGACCAGGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGG
GAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTATAATTAAAACTAAGTAAAA
>TRINITY_DN134642_c0_g1_i2 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGgtaattataagtttgttctagacttaaatttcatatttcataagtttggctcgtggggtttgtggctttttatgtccaagcccttggaaaaagcttcatgtactaaataacaatttgctatcccacatttgtt
tgcgagaattggtaggtggtaacatataaactccatgatttgttatgtcgatgtgggtgagggttttaagtcctctccacacaatggttgatttggcagCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAA
ACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTT
GTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGC
TGAAAGTTTTGAAATTTATGTCAGTTCTTGCTCATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTA
ATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTG
GCTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGC
CATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAA
ACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACA
ATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTA
GTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGC
ATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACAT
TCCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAG
GTAACCAAGGATGGCATGTATTCCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTC
CCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAA
CCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAA
TGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTATATG
TTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAA
TGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTATAAT
TAAAACTAAGTAAAA
Intron 17 GTAAGATGGA ... TGTTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.8 | 46.5 | 34 | 19.5 |
| A2 | 42.71 | 25 | 24 | 12 |
| A3 | 43.77 | 25.5 | 23 | 16 |
| A4 | 52.43 | 16 | 22 | 13 |
| A5 | 63.89 | 9 | 22 | 6 |
| A6 | 38.86 | 62.5 | 54.3 | 24.5 |
| A7 | 38.58 | 105.8 | 82.5 | 49.5 |
| A8 | 44.9 | 94.3 | 97.3 | 54 |
| A9 | 28.49 | 104.8 | 49 | 34 |
| A10 | 40.52 | 73.5 | 66.5 | 33.3 |
>TRINITY_DN49214_c2_g2_i10 from sample A7 / Example spliced isoformCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTT
AAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTT
GTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGT
ATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTT
CCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCTGCCATAAAATTACTTTAATATACATGACTTGCAGACTGTTTGCTTATGCATAGATGGT
TGAATGCTTAGTTGTTTTCCTTTTTTCTTACGGATTTTAATTGCTTCTGACCTCCTGTCATAATTTTACTTGATGTCTTTAAAGTTGAAGATTATTCGGGCCTGAGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTTTTCCATAGGTGAAATGGAGTGTATGGGGTGATGTGTCAATA
CTCCAATGATTGTTGTAGCTGACCACACAAAAGGTTCAAAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTT
TTCTTTTACAGGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTTGAGCCGGCGGCCACATGACATTACTTAGTGAACCAAATCCTCCACCGTGTTGTGACTTGGATTCATGTTAATGTGGCACAATTTTAAATGTTTTATTGTCAACGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAA
GAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGAT
ATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTATATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTT
GAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCC
>TRINITY_DN49214_c2_g2_i15 from sample A7 / Example unspliced isoform:CCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTT
AAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTT
GTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGT
ATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTT
CCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCTGCCATAAAATTACTTTAATATACATGACTTGCAGACTGTTTGCTTATGCATAGATGGT
TGAATGCTTAGTTGTTTTCCTTTTTTCTTACGGATTTTAATTGCTTCTGACCTCCTGTCATAATTTTACTTGATGTCTTTAAAGTTGAAGATTATTCGGGCCTGAGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTTTTCCATAGGTGAAATGGAGTGTATGgtaagatggagtttct
tagtttaattctttccactcttatgagaaagttggcatttagtttaataggttgttttgatgttccagcttcattgcatagtactttgttgtttggttgtttcccagGGGTGATGTGTCAATACTCCAATGATTGTTGTAGCTGACCACACAAAAGGTTCAAAAGGATTTACATACAACTACTATGTAATGTTGTAATTT
TGTGTATTATATAGATGTTCTTATCATTATGTCTATATAGCATCCTCAAAGTTAGGATTATGTAATTTCGATAATGTTTTGATGTTTATTGCAACGAACTTTTCCATGGTTGGTGTTATTGTTTTTAATGTAATAGTACACTTTGTACAGGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACT
CCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTTGAGCCGGCGGCCACATGACATTACTTAGTGAACCAAATCCTCCACCGTGTTGTGACTTGGATTC
ATGTTAATGTGGCACAATTTTAAATGTTTTATTGTCAACGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATC
TGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGATATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTATATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTT
GTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATC
AGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCC
Intron 18 GTATGAGAAG ... TTGTATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.66 | 110.1 | 51 | 60.6 |
| A2 | 24.63 | 82.7 | 27 | 18.3 |
| A3 | 28.88 | 93.6 | 38 | 33.5 |
| A4 | 23.05 | 83.5 | 25 | 46.2 |
| A5 | 17.06 | 48.6 | 10 | 22.4 |
| A6 | 34.43 | 62.9 | 33 | 20.1 |
| A7 | 16.32 | 169.4 | 33 | 42.3 |
| A8 | 28.46 | 103.1 | 41 | 32.9 |
| A9 | 25.57 | 116.5 | 40 | 36 |
| A10 | 17.41 | 142.3 | 30 | 50.3 |
>TRINITY_DN134642_c0_g1_i4 from sample A1 / Example spliced isoformAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGGTGGATTCATTTGCAGCAAACACCTAACAGTATCCCAGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCT
CATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAAT
GTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGA
CACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTATTTCCTTTGG
GTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTGAAAATAGTGG
GCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTGGAATGGAACC
CTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGGACCAGGTACA
AGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATACACTTAATCC
ACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAATAGGCATGACT
TGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATTCCGTAGGCGA
AATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATATTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAA
ATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGTGAACCAAAGCCTCCACCGTGTCGTGACTTGGATTC
ATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAGTATC
TGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTGTAGCAACTTGACAGGGAATCATCAAAAAATTGTTTTATATGTTGCAATAATTCACTGGGACGAGTGAAATGTT
GTTGCAAGCTATGATTGTACCAGCATGCTCACTAGTATGTCTTAAGTTTTGTATTTGTCCAGGAATGACAACACGTTTGTGGGTTGTTGAGACCAGGACTTTTATTAGATGAGCCATTGATGTCTAAACACTAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGG
GAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTATAATTAAAACTAAGTAAAA
>TRINITY_DN134642_c0_g1_i31 from sample A1 / Example unspliced isoform:AGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAACCTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTT
TGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCAGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACAAACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGTTGTTGCATTGGTCCCT
GATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGTTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGG
AGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTT
ATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGAT
GAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGgtatgagaagggtttattgtagctttttgtgaggtcttttttagacctctccaatgatgttaactctcttt
gtattcttgcccatttttggttgtaaaacacagtttggtctctaggcatggtcactcctgggctctaagcaatctgtttatttgcatttttcttgtgatattacattattaagaggttaggttgctataatatttcattaatatttttcttattttgtataaagGTGGATTCATTTGCAGCAAACACCTAACAGTATCCC
AGCTGAAAGTTTTGAAATTTATGTCAGTTCTTGCTCATATTGCAGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCTGATGCTCTGTTCTTACAGCTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCA
TTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATCGGATGAAGTTGAGGAGGATATTCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAG
CTGGCTGACAGAGATAGTCTTCCCGAGGTTAAGGACACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAG
TGCCATTCAGACACTTAAGGAAGTATTTCCTTTGGGTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCC
AAAACTACAATAGAGAGCTGGTGTGAAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACT
ACAATAGGTAGGTCAAGTAAACTTGGAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATG
TTAGTTCAAATTCCATATGCATGGGACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTT
TGCATTTTTTAGAGAAGCTCAGATACACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAA
CATTCCGCCAGAAAATTACTTTAATAGGCATGACTTGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCA
GAGGTAACCAAGGATGGCATGTATTCCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGCTACACAAAGCGTGTTGTTGAGATGCTGAGGCGGGGCGAAACTCCTCCAGCAAAAGCTTAAATAATA
TTCCCTACTCTTTTTCATCATGTTTTCCAAGAGAAATAGCCAGCGTTTATATCAATCATGCCTTTTCTTTTACAGTTACACCAAAGCGTGTTGTCGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTTGGGACACAAAATCCAGATCGTATTATGTCAGGTCCAGCAGGTGGCAACACGACATTACTTAGT
GAACCAAAGCCTCCACCGTGTCGTGACTTGGATTCATGTTAATGTGGCACAATTTGAAATATTTTATTGTCAATGCAATAAATTACAATCTTTATGCAATTTGTCCAATTCCTGAGAACAGAAGAACCTGCAAAATAAAATGGTCAGGGACTTGATTGTGAAAACTCTTGCAAGTGTTTCCTGGATTTATAGCCTCTGGT
AAATGCCTGAATTTCACTGCTCCAAATTCAGTATCTGAATATATTGCTATTTATCCTCTGTCTTTCCCATAAACCAGTTCATGCTATTGGTTTTATATCTACCAAGATACCTTCAAATTCGACATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTTTAGCACCTTGACAGGGAATCATAAAAAAATTGTTTTAT
ATGTTGCAGTTATTTACTGGGAGGAGTGAAATGTTGTTGCAAGCCATCATTGTACCAGCATGCTCACCAGTGTTTCTTCAGTTTTGTGTTTGTCAAGGAATGACAACAGGGTTGTGGGCTGTTGAGACCAGTGTTTAAACATTATATGCCTTACTGTTAAGGCCAGACTTTTATTAGATGAGCCATTGATGTCTAAACAC
TAATGGAATTTTTTTAATTGATTTTCTTTAAAATCAGTCTTTAAGTTACACGAATGACAAATTTGCAGGGAATAATGTTCAAGTGTTCAATTTTATTATCACGTCTTGTGTCTTCCAAGTATTCTCTTGATTGATTTCCAGTGTTGGTTCACATCTAGTAATGCTTGTACGGAACTTCTGAAAACAATGACCTTTATTAT
AATTAAAACTAAGTAAAA
Intron 19 GTGGATTTAT ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.11 | 79 | 113 | 89 |
| A2 | 67.66 | 38 | 83 | 76 |
| A3 | 65.09 | 48 | 94 | 85 |
| A4 | 68.07 | 38 | 83 | 79 |
| A5 | 69.7 | 20 | 49 | 43 |
| A6 | 65.35 | 35 | 65 | 67 |
| A7 | 70.11 | 71 | 173 | 160 |
| A8 | 69.89 | 42 | 103 | 92 |
| A9 | 72.17 | 43 | 115 | 108 |
| A10 | 71.2 | 54 | 142 | 125 |
>TRINITY_DN124316_c4_g1_i10 from sample A2 / Example spliced isoformAAAAAAACAATTCCAAGCCTCGGTTATTCAGTTTTTTCACTCAAATATATAGGTTAAATTCGAGTCCGTAGAGGGGCTTGTTCAACCCCAAAGCAAATTGAAGCCCAACCTTATCTCAATCCATAACACCACAGCTCCACACTGGTTAAATCGAGTCCGTAGAGGGGCCTATTCAACCCCGAAGCAAATCGAAGCACAAC
CTTGTCTCAATCCATAACACCACAGCTCCATACTGGTTATGATTGGCAATGGCACTTCTCAAGTTCGCCCCCTGCCATGGACTTGGCTTTTTGCACAACTTTTCTGATGGAGATAACATCAAAAGGAGATCGGATTCGATACATCTTCCACCCAACAGCCGCAGAAGCACAGTGAGGAGAAACAGCTTGCCACGCCGACA
AACGAGATGTATAGCAAGCAAATGGGCAGACGGGCTCTTTTCCGATTCCAATGACCCAACCGACTCATGCTCTGGTGTTGCATTGGTCCCTGATAGACAATTTACTCTCCCCATTGACTTCTACCAAGTATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGCTTACGAGGCAAGAGTTCGCAGGGTTC
CCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGGAGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAACCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCG
GAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCACCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAG
CCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGGAATTCATGAATGAAGCTTTATCACATATGACGGATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGT
TAGCGTTGTGTTAATTCAGGAAGGTTTTGTTGGAAAAAGGCCTCACCTGATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTG
AAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGCCTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATTGGATGAAGTTGAGGAGGATATCCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCCG
AGGTTAAGGACACATGAGGTCTGACATTCAATCTCAGAGATTATTGTGATGATTCTACTGTCTTAAGTTGTTTGGAAAGGTTGGAAAAGGGCAGAAGCTCTCCATTGGCAACAGCTGCAGCTATTGTGAAAATTGGAGCCGAGGCTGGGGCTTCCCTTGATAATGTCAAGGCAAGTGCCATTCAGACACTTAAGGAAGTA
TTTCCTTTGGGTAATGGGAGGTGGGAAAGAAGTAAGAGTCCACAATGCTTCCACCATTTCTACAGAAGCACAGTTGACCGTAGACCTGCATCATAAAGGCTATCCTAAGGGTGACATTTACAAGCAACCTAGAATGAGTAATGGAGATTTATCAGATGTCCCCTCTGAAATTGCCAAAACTACAATAGAGAGCTGGTGTG
AAAATAGTGGGCTAATGGGAGATGAAGAATTACTACTTTAAAAAAAGATCGGTTCTTTTGTTGTGAAGATTGTATGTGCAGGTGTTGTTTTTGGGGAAACTGCTGTTACAGGACTGAGATATTTACCTGCCCAAAACAGTTCCATGAAGACTCTGAAGGAATTCCATCCTCAACTACAATAGGTAGGTCAAGTAAACTTG
GAATGGAACCCTAGGGCTTGCAAATTTCAACTGAACTTTGTTCACAAAGGGTTGGGTAGAAAAACATTATGAAAGAGGCCAGATCTTGAGGATATATTAGTGCATCAACAAGACCTAGAGTTGTATGAGACCATGAGAGAAAACTATCTGAAATTGTACAATCTCTGATAGCATGTTAGTTCAAATTCCATATGCATGGG
ACCAGGTACAAGGTGGAAGGAAGAAAATCGTATTAATGTATTGGGTGCCATCTCAAGTTTCAATACATTTGAATGCTTGCATTTTCTGCTAAAGTAGTACTCTGTAGGTTAATGGAGTTTTTTGCAAATGTATACGGATAAGTTTATGATCCCTTTTTCTCTTCGCCTGCACTTTTGCATTTTTTAGAGAAGCTCAGATA
CACTTAATCCACCTAGGGTTGCTTGCTAATCCACCGCTTCCAATCTGTATTTCAATTTTAATCTAATTGCAGTTTGTGTTTTAACTTTTATCAGCTTCACTTTAATAGACATGACTTTCAAACTGTTTGCTTGTGCACAGTTTTCTTTTTTAATATGGATTTTAAATGCTTCTAACATTCCGCCAGAAAATTACTTTAAT
AGGCATGACTTGCAGACTGTTTGCTTATGCATAGATGGTTGAATGCTTAGTTGTTTTTCTTGTTTCTTATGGATTTTAATTGCTTCTGACCTTCTGTCATAAGTTTACTTGATGTCTTTTAAGTTGAAGATTATTTGGGCCTTTGGCATTTCCTGGTTGCACACCTTTGATTTCAGAGGTAACCAAGGATGGCATGTATT
CCGTAGGCGAAATGGAGTGTATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGACTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGTTGGGACACAAAATCCAGATCGTATTATATCAGGTCCAGCTGGCGGCCACACGACATTACTTTAGTGAAACCAAAGCCTCCACTGTGCCATGACTTAG
ATTCATGTTGATGTGGCACAATTTTAAATGTTTTATTGTCAATACAATAACTTACAATATTTATGCAATTTGTCCAGTTCCTGTGAACACAAGTATCTGCAAAATAAAACAGTCAGGGACTTAATTGGGAAAACTCTTAGAAGTGTTTCCTGGATTTATAGCCTCTGGTAAATGCCTGAATTTCACTGCTCCAAATTCAG
TTTCTCATTATATTGCTATTTATCCTCGGTCATTCCCATAAGCCATTTCATACTATTGGTTTTATTTCTACCAAGATACCTTGAAATTCGATATGAAATCTTGGTGAATTCAAGTGAGGAACTATACATTGTAGCAACTTGACAGGGATCATAAAAAATTGTAACTGGGGACGAGTGAAATGTTGTTGCAAGCTATGATT
GTACCAGCATGCTCACTAGTATGTCTTAAGTTTTGTATTTGTCCAGGAATGACAACACGTTTGTGGGTTGTTGAGACCAGGACTTTTATTAGATGAGCCATTGATGTCTAAACCCTAATGGAATTTTTTTTATCAATTTCCTTTTAAATCAGTTTGTAAGGTACATGAATGACAAATTAGAAGAAATAATATTTCAGTGT
TCAATTTTATAATCATGCTCGTGTCTTCCAAGC
>TRINITY_DN124316_c4_g1_i9 from sample A2 / Example unspliced isoform:ATTAGGAGCTGAGATCCATTACTTGGGGGATGGGATAAAGAGAGCTTACGAGGCAAGAGTTCGCAGGGTTCCCCATGAAGGTTACAGCGACGAAGCTCTCACGGGTCGCAGGCAGATTCTGCATATTGCTTGTGACACGCTGGCGAATCCTTGTTCGAGAGGAGATTACAACCAGGGGCTCATTGAAGATGAGATTGAAA
CCTTGATGAGGGAGGTCCCCTGGAACAAGCTTCCGGGAGCACTGTGCCTGCTTCAAGAAGTGGGAGAGGCGGAAGTTGTTATTCAGGTTGGACAAAAGTTTTTGCAGGAGCGTTTACCCAAATATTTCAAACGGGATGTTATGTTGGCAATGGCTTTGTCTTATGTTGATATTTCTCGGGAGGCTATGGCCGAATCATCA
CCAAATATTATCAAGAGCTGTGAAGCACTAGAAAGAGCAATGCAGATTTTACAGGAAGGTGGAGGTAGAAGCCTGGCACCAGATCTTCAAGAACAGATTGACGAGACATTGGAGGAGATAACCCCTTGTTGTATTCTAGAGCTACTAGCAATGCCTCTGGATGAGGATCATCAAGCTAAGAGAGAAGAGGATCTGCGAGG
AATTCATGAATGAAGCTTTATCACATATGACATATGCTGAGCAGGTCTGCAAAAGACCTGTTTTGAGAAGTTAGCGTTGTGTTAATTCAGGgtggatttatttgcagcaacacctaacatcatcccagctgaaagttttgaaatttatgtcagttcttgctcatattgcagAAGGTTTTGTTGGAAAAAGGCCTCACCTG
ATACAGGAAGCCGATGCTCTGTTCTTACAGTTGCAGCAAACAAATGGAACTTCCATAGAGATTATAAGTGATTTCAGTGCTGCAGAGCAGGAGTTAGACTTTGCACTTGAAAGAGGAAAGTGTTCATTAATATCGGGAGAGCTTGCACTTGAAAGAGGAATGTGTTCATTGCTGTCGGGAGAGCTAGATGATTGTCGGGC
CTGGTTAGGCCTTGATAATGAGAAGTCACCCTACAGGGATCCTCCTATTGTTGATTTTATTCTGGCAAAATTGGATGAAGTTGAGGAGGATATCCTTCTTCCAGGATTGTGCAAGCTGTTAGAAAGCTGGCTGACAGAGATAGTCTTCCC