sp|A2ZIW7|SGS3_ORYSI ----> Protein SUPPRESSOR OF GENE SILENCING 3 homolog
Intron 1 GTAAGAAATT ... AATCTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.28 | 141.8 | 41.7 | 48 |
| A2 | 33.1 | 97 | 30.9 | 48 |
| A3 | 25.24 | 165.9 | 52.2 | 56 |
| A4 | 20.99 | 64 | 21.5 | 17 |
| A5 | 28.15 | 97 | 28.8 | 38 |
| A6 | 13.33 | 13 | 5.5 | 2 |
| A7 | 24.53 | 120 | 31.4 | 39 |
| A8 | 17.71 | 79 | 24.1 | 17 |
| A9 | 14.96 | 108 | 25.9 | 19 |
| A10 | 22.67 | 116 | 22.2 | 34 |
>TRINITY_DN131470_c1_g1_i5 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAATTACTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAAACATGCATATGGCCCTATG
GGCCATCGTGGAATGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACAACGTGTACTATATGGTTACTTGGCAACAAAAGAAGCGATGGAGATCTTCAACAG
ACACTCAAAAGGTTTGTATTATTTATTTCTTTGAATTTTTATGACATGTATACAAGGGAATGGTAATTAATTTTTAGTTTTGATGTAAATTGTGCAACAAATTTCTGGATGTATCCTAACATGGTTACAACTCATAAAAGCATAACTGTATTATTTAGGAAAGTCTAATATGTACAGCAGGATTCTTTAGTTATTTATGT
AATCCCTGAGACAAATTAGGAGGTAGATGCTTTTTTGTTCATGTAGTCTGATGCAAGTTGAGAGTAAAGTTTTAATCTTGTATGGAAAGAGATATTATAACAGTGCAAGAATATCTTGCAGGAAAAGCAAGTTTGAAGTGTGATATGAAATCATATCATAAGATGGTTGTAGAACCAATGAAACAAATGGATGAGGACAA
TCAGAAG
>TRINITY_DN131470_c1_g1_i23 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCG
GATTCGAATTCGCGACGAAAGAGgtaagaaatttagaaaacgcgtgaatattttggacatagctgttatttaaagctcctttcatattgtgtgtgcgtaagagaaggtagcaattactgtataattgtcaaatctcacagGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCG
GTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCT
AGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAG
GCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGA
Intron 2 GTAACATTAA ... TACATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.68 | 196 | 48 | 102 |
| A2 | 28.65 | 137 | 51 | 59 |
| A3 | 25.15 | 186 | 56 | 69 |
| A4 | 24.71 | 96 | 22 | 41 |
| A5 | 24.55 | 83 | 28 | 26 |
| A6 | 23.53 | 13 | 4 | 4 |
| A7 | 26.01 | 101 | 34 | 37 |
| A8 | 20.97 | 49 | 15 | 11 |
| A9 | 24.85 | 124 | 40 | 42 |
| A10 | 24.19 | 141 | 54 | 36 |
>TRINITY_DN131470_c1_g1_i23 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCG
GATTCGAATTCGCGACGAAAGAGGTAAGAAATTTAGAAAACGCGTGAATATTTTGGACATAGCTGTTATTTAAAGCTCCTTTCATATTGTGTGTGCGTAAGAGAAGGTAGCAATTACTGTATAATTGTCAAATCTCACAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCG
GTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCT
AGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAG
GCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGA
>TRINITY_DN131470_c1_g1_i24 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGgtaacattaaacggatctttcaaacaatctttgataaagtttgttcttgtaaaatatgtgatcgattaaatgcgttctttcaagatatcgatctattgaattcgtttttaatctcttacggcacagtgattgatctcttaaattcgttcctaagctttcactgcgaagtctttggaa
agcctctccgcaaaatatttagcagaaacatataccagggcttcacagcttatctttttaacttgataggagcagaaatgaaaaatatataccagtgctccacagcttattgttctgcattctaaagaactttggctgatctgttgattttccgttatttttcatttatttcgctgaatgtttaccaacggaggaagtaa
acattgatgggatggatgtccttgagggttatttaaagaaatttagtgtcgatgatgtcattgaggttcctctggccgcagcctagcgttgtggttcagaatagagttctccgcagggtttctagtcgttttgcttaaatattttacacggatcgtgaactctttaagcccttaacgtgtactccaagtaaaggcagaga
actaaaggagattctgtgagagctaccgtgtctattacacgaagtgatgcgatatttgccgtaggtgattttcatgttcacatccataatttgatctttcttcgtcaatctttgataaatcactttgaaaatatgacgctgtcgtttgggattcgggaatgcctcgcaaaaatgatatgatgtccggaacttcatggaaa
agcggaaacggtggaatctgcaaactttccgactaattttggttttgttctctcgcagaaatttgtactgctgagagaagagaataaatgtgcatcgggaacttgctgactgcgcatcttgaacaactttgtgacgaagcggaagaagggactacgatctttccttagattccagggtacgcgctccttcactcgcccca
gcttgaacgcctttacattttagACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCG
GATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACC
CCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGG
GGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGG
ACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAG
GAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCG
AAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTG
GATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAA
GTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTAT
ATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAA
ATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAAT
GAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAG
CTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAA
GCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAG
TCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
Intron 3 GTTTGTATTA ... TATCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.47 | 275 | 99 | 5 |
| A2 | 15.38 | 286 | 52 | 4 |
| A3 | 18.69 | 335 | 77 | 3 |
| A4 | 25.44 | 126 | 43 | 1 |
| A5 | 29.07 | 61 | 25 | 3 |
| A6 | 15.24 | 89 | 16 | 0 |
| A7 | 11.21 | 1006 | 127 | 2 |
| A8 | 12.69 | 695 | 101 | 0 |
| A9 | 10.99 | 907 | 112 | 3 |
| A10 | 13.42 | 981 | 152 | 4 |
>TRINITY_DN131470_c1_g1_i25 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAATTACTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAAACATGCATATGGCCCTATG
GGCCATCGTGGAATGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACAACGTGTACTATATGGTTACTTGGCAACAAAAGAAGCGATGGAGATCTTCAACAG
ACACTCAAAAGGAAAAGCAAGTTTGAAGTGTGATATGAAATCATATCATAAGATGGTTGTAGAACCAATGAAACAAATGGATGAGGACAATCAGAAGCTGACTCGGTTTAAGTCTAAAGTTGCTAAACAGCAGGAGTACAGCAGAGCTTTAGAAGAGACAGTTAGTATAGTGGCATCAAAATTGCATATGAGAGACACAG
AAATTAAGATTATTAGACAGAGGGCTACGGAGCAACATGAGGAATCCAAGAAAGAGGTATGGTTAATTTATAGTTGAGACTTGAGCATATGGGAGTTGAAACATAGCAGGCGAAATTAGTTCAGTCAGTGTCGTGTACTTGCACATTCAGTATAATTTTATGTGAAGCATAATTCTGTTGTTGCCCTTGAACATGTAATT
TTAATGAAAAAATACAATATATTCAAGTATTTATATTTTATTGCAGATTGATATTTTGATTTTTGAGGTTCTCATAAGTGCTATGCTAATTGAAATTTTTGGGCAGATGGACTATTTGGAATGGACTATTTGGAGCAAACTTATAGACAACAAATTGATCAGTTGAATGAAGATATTGAAAAAAGAGAATTAGAGTTGGA
AATGATGCAAGCAGAGTTCAAGAAAGGACACTTAGATCGTTGCCACCAACTTGAAGTTTACTCTTCCAAGCTCCCAAAAGCTACACAAGTTATGAATGATGAACAAAAAGAACAACAGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATCAAGAATATGAACGAGAGA
AGCAAGAGCT
>TRINITY_DN131470_c1_g1_i5 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAATTACTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAAACATGCATATGGCCCTATG
GGCCATCGTGGAATGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACAACGTGTACTATATGGTTACTTGGCAACAAAAGAAGCGATGGAGATCTTCAACAG
ACACTCAAAAGgtttgtattatttatttctttgaatttttatgacatgtatacaagggaatggtaattaatttttagttttgatgtaaattgtgcaacaaatttctggatgtatcctaacatggttacaactcataaaagcataactgtattatttaggaaagtctaatatgtacagcaggattctttagttatttatgt
aatccctgagacaaattaggaggtagatgcttttttgttcatgtagtctgatgcaagttgagagtaaagttttaatcttgtatggaaagagatattataacagtgcaagaatatcttgcagGAAAAGCAAGTTTGAAGTGTGATATGAAATCATATCATAAGATGGTTGTAGAACCAATGAAACAAATGGATGAGGACAA
TCAGAAG
Intron 4 GTATGCTTAA ... ATTTGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.6 | 200.7 | 43.4 | 75 |
| A2 | 33.92 | 218.6 | 32.4 | 79.6 |
| A3 | 32.69 | 203.6 | 27.9 | 80.3 |
| A4 | 31.33 | 63.1 | 11.4 | 20 |
| A5 | 36.98 | 38.6 | 9.1 | 19 |
| A6 | 30.22 | 65.7 | 9.3 | 26 |
| A7 | 28.75 | 593.9 | 73.3 | 190.5 |
| A8 | 29.74 | 711.4 | 101.9 | 237.4 |
| A9 | 29.28 | 697.1 | 73.5 | 218.4 |
| A10 | 29.52 | 516.4 | 69.3 | 171.2 |
>TRINITY_DN131470_c1_g1_i28 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTAAGAAATTTAGAAAACGCGTGAATATTTTGGACATAGCTGTTATTTAAAGCTCCTTT
CATATTGTGTGTGCGTAAGAGAAGGTAGCAATTACTGTATAATTGTCAAATCTCACAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGC
AGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAA
ATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCA
TCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGA
GGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGC
AACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAG
AACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTT
AAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATG
GAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTA
AAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGG
AGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAA
GAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTG
AACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATT
AAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
>TRINITY_DN131470_c1_g1_i11 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAG
GGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAG
ATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGA
GGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGA
GCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGgtatgcttaattaatagttggaactggcacgtatggtagttgaaacatagcaatttaaataagttcagttactgtcttgtacttgcatcttgagtataattttatacgaggcctaaccctgttgtccttt
acacatgtaattttagtgaaaaatttcaatatattcaggtatgtatattttatttatttcagagtatataattttttggtttttaaggttctcacgagtgctgtggtaattgaaaaatttgggcagATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACA
GTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAA
Intron 5 GTGATTTTCA ... TCTCTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.78 | 21 | 6 | 20 |
| A2 | 55.56 | 20 | 9 | 25 |
| A3 | 52.46 | 29 | 2 | 32 |
| A4 | 55.56 | 16 | 8 | 20 |
| A5 | 54.29 | 16 | 1 | 19 |
| A6 | 50 | 7 | 0 | 7 |
| A7 | 46.43 | 15 | 0 | 13 |
| A8 | 45.45 | 12 | 0 | 10 |
| A9 | 47.37 | 20 | 6 | 18 |
| A10 | 48.72 | 20 | 0 | 19 |
>TRINITY_DN118129_c7_g1_i11 from sample A2 / Example spliced isoformACGTGTACTCCAAGTAAAGGCAGAGAACTAAAGGAGATTCTGTGAGAGCTACCGTGTCTATTACACGAAGTGATGCGATATTTGCCGTAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAG
ATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAACAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAAGTACGTGCGCCTGCACCTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGA
CGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAA
ATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAG
GTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCCTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAA
TGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCC
ATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTG
CACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGAAA
TAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGATACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTC
ATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAG
GAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGCAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTT
GGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAA
TGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGT
AGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAG
AGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCA
>TRINITY_DN118129_c7_g1_i6 from sample A2 / Example unspliced isoform:ACGTGTACTCCAAGTAAAGGCAGAGAACTAAAGGAGATTCTGTGAGAGCTACCGTGTCTATTACACGAAGTGATGCGATATTTGCCGTAGgtgattttcatgttcacatccataatttgatctttcttcgtcaatctttgataaatcactttgaaaatatgacgctgtcgtttgggattcgggaatgcctcgcaaaaatg
atatgatgtccggaacttcatggaaaagcggaaacggtggaatctgcaaactttccgactaattttggttttgttctctcgcagAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCA
GGGTACGCGCTCCTTCACTCGCCCCAGCTTGAACGCCTTTACATTTTAGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAACAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAAGTACGTGCGCCTGCACCTGGCCGCCGCGTGAACGCCTTTACC
TGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAG
Intron 6 GTAAGAAATT ... GGGTGGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.9 | 194 | 27.4 | 104 |
| A2 | 37.07 | 129 | 21.8 | 76 |
| A3 | 30.39 | 197 | 35.6 | 86 |
| A4 | 34.46 | 104.6 | 15 | 55 |
| A5 | 34.57 | 123 | 19.4 | 65 |
| A6 | 18.75 | 13 | 3.6 | 3 |
| A7 | 32.76 | 156 | 20.4 | 76 |
| A8 | 25.38 | 97 | 15.6 | 33 |
| A9 | 28.5 | 143 | 16.8 | 57 |
| A10 | 31.72 | 155 | 14.4 | 72 |
>TRINITY_DN118129_c7_g1_i12 from sample A2 / Example spliced isoformATTTAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGG
ATTCGACGGCCTACCACGGTCTACCAGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAACAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAAGTACGTGCGCCTGCACCTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTA
GCCGGATTCGAATTCGCGACGAAAGAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGA
AATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAA
GGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCCTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAA
ATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGC
CATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATT
GCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAG
>TRINITY_DN118129_c7_g1_i8 from sample A2 / Example unspliced isoform:TTCGAATTCGCGACGAAAGAGgtaagaaatttagaaaacgcgtgaatattttggacatagctgttatttaaagctcctttcatattgtgtgtgcgtaagagaaggtagcaattactgtataattgtcaaatctcacaggtttttctgggtgggtagCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGT
CGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAG
TAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGC
GGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCCTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGG
GAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGA
AATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGG
AGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAG
Intron 7 GTGGGTGGTT ... CGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.69 | 100.2 | 15.7 | 91.3 |
| A2 | 49.72 | 60.6 | 7 | 59.9 |
| A3 | 48.59 | 75.6 | 23 | 71.3 |
| A4 | 51.51 | 35.8 | 15 | 38 |
| A5 | 50.36 | 30.7 | 9 | 31 |
| A6 | 37.03 | 7.1 | 12 | 4 |
| A7 | 38.16 | 56.1 | 11 | 34.6 |
| A8 | 44.85 | 14.8 | 5 | 12 |
| A9 | 38.75 | 49.6 | 27 | 31.2 |
| A10 | 42.76 | 46.3 | 9 | 34.6 |
>TRINITY_DN131470_c1_g1_i8 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGGTACGCGCTCCTTCACTCGCCCCAGCTTGAACGCCTTTACATTTTAGGTCGGTTAGTTT
ACTCGCCTGATTCGAATTCGCGACGGAAGAGGTCAGAAATTCCGAAGCGCGTGAATATGTTGGACATTTCTGTTGTTTAAAGCTCTTTTCCTGTTGCGTGTGCATAGGAGAAGGTAGCGTTGTCGGTATCATTGTGAAATCTCACAGGTTTTCTGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTT
TGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTA
GTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGA
CCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTG
TTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTT
CCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGA
CAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTG
CATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACAT
GCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGG
AAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCAT
GAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGT
TGCTAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAG
ATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGA
CCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCT
TATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCT
GGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
>TRINITY_DN131470_c1_g1_i1 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGGTACGCGCTCCTTCACTCGCCCCAGCTTGAACGCCTTTACATTTTAGGTCGGTTAGTTT
ACTCGCCTGATTCGAATTCGCGACGGAAGAGGTCAGAAATTCCGAAGCGCGTGAATATGTTGGACATTTCTGTTGTTTAAAGCTCTTTTCCTGTTGCGTGTGCATAGGAGAAGGTAGCGTTGTCGGTATCATTGTGAAATCTCACAGGTTTTCTGGgtgggtggttggtcattctctgtcattttttggtaaattacttt
gaaaatataatgcggttgattgcaaatgtgtgtcgcagaaatgacaaaatgtccgaatctttccggaaagcgtacacggtggaatcttcatactttccgactaattttgcttttgtttcgttttgcagACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGA
CGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACT
CTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGA
GATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGC
TGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTC
ATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGAT
CCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGG
CAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGAT
TGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACG
ACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGG
CTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACT
TTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTC
TGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGA
AGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGA
GCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTC
AAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
Intron 8 GTCAGGGATG ... TTTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.95 | 173 | 306 | 212 |
| A2 | 64.92 | 134 | 260 | 236 |
| A3 | 63.27 | 164 | 346 | 219 |
| A4 | 69.32 | 54 | 127 | 117 |
| A5 | 62.34 | 45 | 82 | 67 |
| A6 | 64.45 | 409 | 675 | 808 |
| A7 | 62.78 | 810 | 1507 | 1225 |
| A8 | 61.85 | 1454 | 2361 | 2353 |
| A9 | 61.51 | 946 | 1597 | 1426 |
| A10 | 61.54 | 651 | 1223 | 860 |
>TRINITY_DN131470_c1_g1_i30 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAG
GGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAG
ATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGA
GGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGA
GCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAAC
TTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCA
TGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTT
ATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
>TRINITY_DN131470_c1_g1_i8 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGGTACGCGCTCCTTCACTCGCCCCAGCTTGAACGCCTTTACATTTTAGGTCGGTTAGTTT
ACTCGCCTGATTCGAATTCGCGACGGAAGAGGTCAGAAATTCCGAAGCGCGTGAATATGTTGGACATTTCTGTTGTTTAAAGCTCTTTTCCTGTTGCGTGTGCATAGGAGAAGGTAGCGTTGTCGGTATCATTGTGAAATCTCACAGGTTTTCTGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTT
TGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTA
GTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGA
CCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTG
TTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTT
CCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGA
CAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTG
CATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACAT
GCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGG
AAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCAT
GAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGT
TGCTAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAG
ATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGA
CCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGgtcagggatgatttctatgcatttaagtaggtatgcct
tatgttagaactgttgttgtattgttgagcaatcgaatttttatagcgatgtatttgtttcagAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCT
GGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
Intron 9 GTACGCGCTC ... GTGTGCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.87 | 33 | 48 | 12.5 |
| A2 | 49.25 | 17.5 | 23 | 11 |
| A3 | 58.58 | 28.5 | 47 | 33.5 |
| A4 | 54.61 | 17.5 | 27 | 15 |
| A5 | 47.27 | 17 | 20 | 10 |
| A6 | 83.75 | 2.5 | 3 | 23 |
| A7 | 55.39 | 17.5 | 16 | 27.5 |
| A8 | 69.08 | 5.5 | 11 | 13.5 |
| A9 | 67.23 | 15 | 27 | 33 |
| A10 | 58.47 | 21.5 | 26 | 34.5 |
>TRINITY_DN118129_c7_g1_i9 from sample A2 / Example spliced isoformATTTAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGG
ATTCGACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGGAGAAGGTAGCGTTGTCGGTATCATTGTGAAATCTCACAGGTTTTCTGGACATTC
GTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAACAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAAGTACGTGCGCCTGCACCTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGCTGGTT
TTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACT
GTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCC
TAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCCTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTA
AGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAG
ATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGA
GTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAG
>TRINITY_DN118129_c7_g1_i4 from sample A2 / Example unspliced isoform:ACGTGTACTCCAAGTAAAGGCAGAGAACTAAAGGAGATTCTGTGAGAGCTACCGTGTCTATTACACGAAGTGATGCGATATTTGCCGTAGGTGATTTTCATGTTCACATCCATAATTTGATCTTTCTTCGTCAATCTTTGATAAATCACTTTGAAAATATGACGCTGTCGTTTGGGATTCGGGAATGCCTCGCAAAAATG
ATATGATGTCCGGAACTTCATGGAAAAGCGGAAACGGTGGAATCTGCAAACTTTCCGACTAATTTTGGTTTTGTTCTCTCGCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCA
GGgtacgcgctccttcactcgccccagcttgaacgcctttacattttaggtcggttagtttactcgcctgattcgaattcgcgacggaagaggtcagaaattccgaagcgcgtgaatatgttggacatttctgttgtttaaagctcttttcctgttgcgtgtgcatagGAGAAGGTAGCGTTGTCGGTATCATTGTGAAA
TCTCACAGGTTTTCTGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAACAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAAGTACGTGCGCCTGCACCTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCG
AATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACA
GGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAA
GATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCCTCACCACTACCTGGAAAAGGTGTTGGACATGG
GGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTG
ATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGG
GTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGG
AATGGGAAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGATACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAG
TATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCC
AAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGCAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGA
ATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAAT
ATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATG
CATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGG
AAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCA
Intron 10 GTACGCGCTC ... CGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.28 | 168.7 | 48 | 91.7 |
| A2 | 29.25 | 101 | 23 | 60.5 |
| A3 | 28.31 | 152.1 | 48.4 | 71.7 |
| A4 | 31.38 | 71 | 27 | 38 |
| A5 | 30.62 | 60.1 | 22.1 | 31 |
| A6 | 21.21 | 13 | 3 | 4 |
| A7 | 24.39 | 79.8 | 16.7 | 34.8 |
| A8 | 24.21 | 36 | 11 | 12 |
| A9 | 30.4 | 68.1 | 28.4 | 31.1 |
| A10 | 24.86 | 91.9 | 26 | 34.8 |
>TRINITY_DN131470_c1_g1_i5 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAATTACTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAAACATGCATATGGCCCTATG
GGCCATCGTGGAATGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACAACGTGTACTATATGGTTACTTGGCAACAAAAGAAGCGATGGAGATCTTCAACAG
ACACTCAAAAGGTTTGTATTATTTATTTCTTTGAATTTTTATGACATGTATACAAGGGAATGGTAATTAATTTTTAGTTTTGATGTAAATTGTGCAACAAATTTCTGGATGTATCCTAACATGGTTACAACTCATAAAAGCATAACTGTATTATTTAGGAAAGTCTAATATGTACAGCAGGATTCTTTAGTTATTTATGT
AATCCCTGAGACAAATTAGGAGGTAGATGCTTTTTTGTTCATGTAGTCTGATGCAAGTTGAGAGTAAAGTTTTAATCTTGTATGGAAAGAGATATTATAACAGTGCAAGAATATCTTGCAGGAAAAGCAAGTTTGAAGTGTGATATGAAATCATATCATAAGATGGTTGTAGAACCAATGAAACAAATGGATGAGGACAA
TCAGAAG
>TRINITY_DN131470_c1_g1_i1 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGgtacgcgctccttcactcgccccagcttgaacgcctttacattttaggtcggttagttt
actcgcctgattcgaattcgcgacggaagaggtcagaaattccgaagcgcgtgaatatgttggacatttctgttgtttaaagctcttttcctgttgcgtgtgcataggagaaggtagcgttgtcggtatcattgtgaaatctcacaggttttctgggtgggtggttggtcattctctgtcattttttggtaaattacttt
gaaaatataatgcggttgattgcaaatgtgtgtcgcagaaatgacaaaatgtccgaatctttccggaaagcgtacacggtggaatcttcatactttccgactaattttgcttttgtttcgttttgcagACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGA
CGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACT
CTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGA
GATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGC
TGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTC
ATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGAT
CCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGG
CAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGAT
TGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACG
ACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGG
CTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACT
TTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTC
TGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGA
AGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGA
GCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTC
AAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
Intron 11 GTACGCGCTC ... TACATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.01 | 168.7 | 43 | 101.7 |
| A2 | 27.19 | 101 | 17 | 58.4 |
| A3 | 25.84 | 152.1 | 37.3 | 68.7 |
| A4 | 32.01 | 71 | 26 | 40.9 |
| A5 | 28.54 | 60.1 | 21.9 | 26.1 |
| A6 | 21.21 | 13 | 3 | 4 |
| A7 | 23.94 | 79.8 | 13.7 | 36.6 |
| A8 | 23.48 | 36 | 11 | 11.1 |
| A9 | 32.34 | 68.1 | 23.3 | 41.8 |
| A10 | 22.96 | 91.9 | 19 | 35.8 |
>TRINITY_DN131470_c1_g1_i5 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAATTACTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAAACATGCATATGGCCCTATG
GGCCATCGTGGAATGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACAACGTGTACTATATGGTTACTTGGCAACAAAAGAAGCGATGGAGATCTTCAACAG
ACACTCAAAAGGTTTGTATTATTTATTTCTTTGAATTTTTATGACATGTATACAAGGGAATGGTAATTAATTTTTAGTTTTGATGTAAATTGTGCAACAAATTTCTGGATGTATCCTAACATGGTTACAACTCATAAAAGCATAACTGTATTATTTAGGAAAGTCTAATATGTACAGCAGGATTCTTTAGTTATTTATGT
AATCCCTGAGACAAATTAGGAGGTAGATGCTTTTTTGTTCATGTAGTCTGATGCAAGTTGAGAGTAAAGTTTTAATCTTGTATGGAAAGAGATATTATAACAGTGCAAGAATATCTTGCAGGAAAAGCAAGTTTGAAGTGTGATATGAAATCATATCATAAGATGGTTGTAGAACCAATGAAACAAATGGATGAGGACAA
TCAGAAG
>TRINITY_DN131470_c1_g1_i24 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGGTAACATTAAACGGATCTTTCAAACAATCTTTGATAAAGTTTGTTCTTGTAAAATATGTGATCGATTAAATGCGTTCTTTCAAGATATCGATCTATTGAATTCGTTTTTAATCTCTTACGGCACAGTGATTGATCTCTTAAATTCGTTCCTAAGCTTTCACTGCGAAGTCTTTGGAA
AGCCTCTCCGCAAAATATTTAGCAGAAACATATACCAGGGCTTCACAGCTTATCTTTTTAACTTGATAGGAGCAGAAATGAAAAATATATACCAGTGCTCCACAGCTTATTGTTCTGCATTCTAAAGAACTTTGGCTGATCTGTTGATTTTCCGTTATTTTTCATTTATTTCGCTGAATGTTTACCAACGGAGGAAGTAA
ACATTGATGGGATGGATGTCCTTGAGGGTTATTTAAAGAAATTTAGTGTCGATGATGTCATTGAGGTTCCTCTGGCCGCAGCCTAGCGTTGTGGTTCAGAATAGAGTTCTCCGCAGGGTTTCTAGTCGTTTTGCTTAAATATTTTACACGGATCGTGAACTCTTTAAGCCCTTAACGTGTACTCCAAGTAAAGGCAGAGA
ACTAAAGGAGATTCTGTGAGAGCTACCGTGTCTATTACACGAAGTGATGCGATATTTGCCGTAGGTGATTTTCATGTTCACATCCATAATTTGATCTTTCTTCGTCAATCTTTGATAAATCACTTTGAAAATATGACGCTGTCGTTTGGGATTCGGGAATGCCTCGCAAAAATGATATGATGTCCGGAACTTCATGGAAA
AGCGGAAACGGTGGAATCTGCAAACTTTCCGACTAATTTTGGTTTTGTTCTCTCGCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGgtacgcgctccttcactcgcccca
gcttgaacgcctttacattttagACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCG
GATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACC
CCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGG
GGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGG
ACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAG
GAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCG
AAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTG
GATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAA
GTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTAT
ATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAA
ATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAAT
GAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAG
CTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAA
GCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAG
TCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
Intron 12 GTCGGTTAGT ... CGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.45 | 101.4 | 20 | 91.4 |
| A2 | 38.72 | 57.8 | 13 | 60 |
| A3 | 41.59 | 68.4 | 26 | 71.4 |
| A4 | 41.55 | 40.8 | 20 | 38 |
| A5 | 41.39 | 26.2 | 6 | 31 |
| A6 | 61.9 | 4 | 9 | 4 |
| A7 | 39.18 | 36.2 | 12 | 34.6 |
| A8 | 38.48 | 11.2 | 2 | 12 |
| A9 | 41.99 | 41.6 | 29 | 31.2 |
| A10 | 42.95 | 35.6 | 19 | 34.6 |
>TRINITY_DN131470_c1_g1_i24 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGGTAACATTAAACGGATCTTTCAAACAATCTTTGATAAAGTTTGTTCTTGTAAAATATGTGATCGATTAAATGCGTTCTTTCAAGATATCGATCTATTGAATTCGTTTTTAATCTCTTACGGCACAGTGATTGATCTCTTAAATTCGTTCCTAAGCTTTCACTGCGAAGTCTTTGGAA
AGCCTCTCCGCAAAATATTTAGCAGAAACATATACCAGGGCTTCACAGCTTATCTTTTTAACTTGATAGGAGCAGAAATGAAAAATATATACCAGTGCTCCACAGCTTATTGTTCTGCATTCTAAAGAACTTTGGCTGATCTGTTGATTTTCCGTTATTTTTCATTTATTTCGCTGAATGTTTACCAACGGAGGAAGTAA
ACATTGATGGGATGGATGTCCTTGAGGGTTATTTAAAGAAATTTAGTGTCGATGATGTCATTGAGGTTCCTCTGGCCGCAGCCTAGCGTTGTGGTTCAGAATAGAGTTCTCCGCAGGGTTTCTAGTCGTTTTGCTTAAATATTTTACACGGATCGTGAACTCTTTAAGCCCTTAACGTGTACTCCAAGTAAAGGCAGAGA
ACTAAAGGAGATTCTGTGAGAGCTACCGTGTCTATTACACGAAGTGATGCGATATTTGCCGTAGGTGATTTTCATGTTCACATCCATAATTTGATCTTTCTTCGTCAATCTTTGATAAATCACTTTGAAAATATGACGCTGTCGTTTGGGATTCGGGAATGCCTCGCAAAAATGATATGATGTCCGGAACTTCATGGAAA
AGCGGAAACGGTGGAATCTGCAAACTTTCCGACTAATTTTGGTTTTGTTCTCTCGCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGGTACGCGCTCCTTCACTCGCCCCA
GCTTGAACGCCTTTACATTTTAGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCG
GATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACC
CCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGG
GGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGG
ACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAG
GAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCG
AAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTG
GATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAA
GTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTAT
ATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAA
ATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAAT
GAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAG
CTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAA
GCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAG
TCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
>TRINITY_DN131470_c1_g1_i1 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGGTACGCGCTCCTTCACTCGCCCCAGCTTGAACGCCTTTACATTTTAGgtcggttagttt
actcgcctgattcgaattcgcgacggaagaggtcagaaattccgaagcgcgtgaatatgttggacatttctgttgtttaaagctcttttcctgttgcgtgtgcataggagaaggtagcgttgtcggtatcattgtgaaatctcacaggttttctgggtgggtggttggtcattctctgtcattttttggtaaattacttt
gaaaatataatgcggttgattgcaaatgtgtgtcgcagaaatgacaaaatgtccgaatctttccggaaagcgtacacggtggaatcttcatactttccgactaattttgcttttgtttcgttttgcagACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGA
CGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACT
CTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGA
GATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGC
TGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTC
ATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGAT
CCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGG
CAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGAT
TGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACG
ACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTATATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGG
CTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAAATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACT
TTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAATGAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTC
TGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAGCTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGA
AGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAAGCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGA
GCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAGTCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTC
AAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC
Intron 13 GTAACATTAA ... TCTCTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.77 | 138 | 48 | 20 |
| A2 | 24.05 | 120 | 51 | 25 |
| A3 | 19.73 | 179 | 56 | 32 |
| A4 | 18.1 | 95 | 22 | 20 |
| A5 | 19.5 | 97 | 28 | 19 |
| A6 | 24.44 | 17 | 4 | 7 |
| A7 | 20.22 | 92.8 | 34 | 13 |
| A8 | 17.99 | 57 | 15 | 10 |
| A9 | 20 | 116 | 40 | 18 |
| A10 | 20.22 | 144 | 54 | 19 |
>TRINITY_DN131470_c1_g1_i5 from sample A1 / Example spliced isoformAATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAG
AACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCGGATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGC
GGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACCCCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTC
TAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGGGGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACA
GGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGGACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCA
GGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAGGAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGA
TGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCGAAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAG
AGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTGGATTGGAATGGGGAATAAAGAATTACTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAAACATGCATATGGCCCTATG
GGCCATCGTGGAATGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAAGTGGGGTCTTGTTTCAACCAGGTGGACAACGTGTACTATATGGTTACTTGGCAACAAAAGAAGCGATGGAGATCTTCAACAG
ACACTCAAAAGGTTTGTATTATTTATTTCTTTGAATTTTTATGACATGTATACAAGGGAATGGTAATTAATTTTTAGTTTTGATGTAAATTGTGCAACAAATTTCTGGATGTATCCTAACATGGTTACAACTCATAAAAGCATAACTGTATTATTTAGGAAAGTCTAATATGTACAGCAGGATTCTTTAGTTATTTATGT
AATCCCTGAGACAAATTAGGAGGTAGATGCTTTTTTGTTCATGTAGTCTGATGCAAGTTGAGAGTAAAGTTTTAATCTTGTATGGAAAGAGATATTATAACAGTGCAAGAATATCTTGCAGGAAAAGCAAGTTTGAAGTGTGATATGAAATCATATCATAAGATGGTTGTAGAACCAATGAAACAAATGGATGAGGACAA
TCAGAAG
>TRINITY_DN131470_c1_g1_i24 from sample A1 / Example unspliced isoform:AATTAAGTAAAAGAACAGATAAAAACGAGACAGATGTAAGAGAACCGGGCAACACGCTAGTGGGTAAAGTTGGAGAGTGGCCATCAAATCGTGTTGAAGGGTTTCGTGAAATCAAGAAAGTAGCTTAAACCCTGCGAACACTGCATTTCGCTCTGGTTCGAATATTCCCGGGACGATCACTTGGAAATTGAACAGGATTC
GACGGCCTACCACGGTCTACCAGgtaacattaaacggatctttcaaacaatctttgataaagtttgttcttgtaaaatatgtgatcgattaaatgcgttctttcaagatatcgatctattgaattcgtttttaatctcttacggcacagtgattgatctcttaaattcgttcctaagctttcactgcgaagtctttggaa
agcctctccgcaaaatatttagcagaaacatataccagggcttcacagcttatctttttaacttgataggagcagaaatgaaaaatatataccagtgctccacagcttattgttctgcattctaaagaactttggctgatctgttgattttccgttatttttcatttatttcgctgaatgtttaccaacggaggaagtaa
acattgatgggatggatgtccttgagggttatttaaagaaatttagtgtcgatgatgtcattgaggttcctctggccgcagcctagcgttgtggttcagaatagagttctccgcagggtttctagtcgttttgcttaaatattttacacggatcgtgaactctttaagcccttaacgtgtactccaagtaaaggcagaga
actaaaggagattctgtgagagctaccgtgtctattacacgaagtgatgcgatatttgccgtaggtgattttcatgttcacatccataatttgatctttcttcgtcaatctttgataaatcactttgaaaatatgacgctgtcgtttgggattcgggaatgcctcgcaaaaatgatatgatgtccggaacttcatggaaa
agcggaaacggtggaatctgcaaactttccgactaattttggttttgttctctcgcagAAATTTGTACTGCTGAGAGAAGAGAATAAATGTGCATCGGGAACTTGCTGACTGCGCATCTTGAACAACTTTGTGACGAAGCGGAAGAAGGGACTACGATCTTTCCTTAGATTCCAGGGTACGCGCTCCTTCACTCGCCCCA
GCTTGAACGCCTTTACATTTTAGACATTCGTACAGCTGAGAGGAGAATCAACGTGCCACGGGAACTTTGAATGAGCAGCTAGAACAACTCTGTGACGAAGAAGGGACCGCGACCTTTCCTTGCACTTACTAATTACGTGCGCCTGCACTTGGCCGCCGCGTGAACGCCTTTACCTGTTAGGCCGGTCAGTGCACTAGCCG
GATTCGAATTCGCGACGAAAGAGGTTTTTCTGGGTGGGTAGCTGGTTTTTCTGTGCTTTCAGTGCTAGTAAGAATGTCGAGCGGTCGTTCATACTCTCAGCAAAATGACGAAGGATGGGAAGTGGCTTCCTCCCGCAAGGGCAAGAGCCAGGCCCCCACAACTGCAGCAGCAAACCGGCCGAGGGGCAGTGCTTACTACC
CCGACAGGCCAGGAAATGGAGCTGGGAAGGGGAGAGGGTCGTATACTGTGGATGGCCAGAAATCTGACCGCAGGGTGAACTCTAGTAGTGATCGAGATCAGGCTTATAAGCAACGGGGAGGGAAGGAGCTGGGGAATCCTCAGCAGAGAAACGTAACTCATGAAAATACGACTGCCGCACCCAGGAATGTTGGTGTTTGG
GGCCAAGATGGCAAGGTAAATTGGCCAATGCAGAGCAGTCCGAAGCCTAAAAGTTTAGAGTCTGCTGTTGGAAAGATGGACAGGCGGGATCATGCTGTCCCTCCCCCTCTTGTCAATGGTTGGCAATGGGGAAGAAACAATGGCAGCGGTGCTAACTTGAATTCATCGATAGCGTCACCACTACCTGGAAAAGGTGTTGG
ACATGGGGGGGCAAATGGTAGTGAAGAGAATTCTGAACTTGGAGGTAAGATGCTATCTAAACTTCTTCCTTTTGAGCAATCAGGGGAACCGTTTCATGAAACTGGTAGAGCAGACTATCAGTCTAGCGATGGTGATGCAGAGATTGATAATCTTGACAGTGACGAGGATTTTATGAGCAGCGACGATTGTGATTCTGAAG
GAAGTGATGTAAGCCATGAGACTCTAAAGAAGAATAAGTGGTTCAAGATATTTTTTGAATCCCTTGACAGCTTGAGTATCGATGAAATGAATGATCCCGAGAGGCAGTGGCATTGCCCTGCTTGCAAAGGTGGTGTTGGGGCAATAGATTGGTACAGGGGTATGCAACCTATTGTAGCCCATGCCAAATCTATCAGATCG
AAGAGGGTAAAATTGCACCGCAAACTTGCAGAACTACTGGAAGAAGAGTTGGGAAGGCGAGGAGCTGCATGTGTAATTTCAGAGGAGATGTTTGGCAAGTGGAAAGGTTTACGAGAGACAGTAAATGACCAGGAAATTGTTTGGCCTCCTATGGTTATTATTCAGAACACACTACTTGATCAAGATGAAAACGAGAAGTG
GATTGGAATGGGGAATAAAGAGTTAGTGGAGTATTTTAAAGGATATAAAGCCATGAAAGCAAGACATGCATATGGCCCTAAGGGGCATCGTGGATTGAGTGTACTTATATTTGAGGAATCAGCAATGGGACACTTGGAGGCAGAGCGCTTACAGAAGCAATTTTTAAGGGAAGGGAGAGGTAAAGATGATTGGGAGAGAA
GTGGGGTCTTGTTTCAACCAGGTGGACTACTTAGAAGCAGAGCGCTTACACAAGCAGTTTTTGAAGGAAGGGAGGGGAAAAGATGATTGGGAACGACGCCCAGTATTGTTTCATCCAGGTGGAAAGCGTGTATTATATGGTTACTTCGCAATAAAAGAAGAGATGGAGATTTTCAACAGACACTCAAAAACGTGTACTAT
ATGGTTAAGGCAAAACAAGCTTGAGGTATGATATGAGATCCTATCATAAGATGGTTGTAGAACCCATGAGGCAAATGGACGAGGACAATCAGAGGCTTACATGGTTTAAAACGAAAGTTGCCAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTAGTAAAGTGGCATCAAAATTGCGAATGAAAGACACTGAA
ATTAAGATTATTAGACAAAGGGCTACAGAGCAACACGAGGAAAGTTGACTTGGTTTAAGACTAAAGTTGCTAAACAACAGGAGCACAGTAGAACTTTAGAAGAGACGGTTGGTATAGTGGCATCAAAATTGCGTATGAGAGACAAGAAAGAGATGGACTATTTGGAGCAAAATTATAGAGAACAAATTGATCAGCTGAAT
GAAGATGTTGTGAAAGGAGAATTACAGTTGGAAAAGATGCAGGAGGAGTTCAAGAAAGTACACTTAGATCGTTGCCACCAACTTGAAGTTGACTCTGCTAAGCTCCCAAAGGATACACAAGTTGTGAATGATGAACAACAAGAACAAAGGATCAAAATTGATGAAGAGATTGCAAGAAGAAAAATTATAGTTGAAGTCAG
CTTCAAAGATCATGATAGTTGAAACCAGTTTGAAAGACTATGAAGAATATGAACGAATGAGGCAAGACCTTATTAAAATGCATGACAAACGGAGAAGGGAGATCAAACTAAGACAATTACAGGAGGAAATAGCATTCGAGAAAGAAGTGGAGCGTGAAAGGGTTGAACTCCTCGAGCAATATCAGAAGAAAACGCAAGAA
GCAGACAATGTTGCTGTTTAATTGCAAAGGTCAGGGATGATTTCTATGCATTTAAGTAGGTATGCCTTATGTTAGAACTGTTGTTGTATTGTTGAGCAATCGAATTTTTATAGCGATGTATTTGTTTCAGAACTTGTTACCACGACCATGACAAATTGATAAATTAAACCAGAGGCTTCGTTTATTAATCTGGAACGAAG
TCCCAAAATGAGGCTTCTTTACATATGGTTTCCTTAAGTCCTAGTTGGAAGTAGCAGAGTGTAAGCTGGTGGGCATAAATTTCCTTACTTTGTTCAAACTTCATAATGATAATGATGACAATGATTTCTCATGACTTCATTCCTTTAC