NA ----> NA
Intron 1 GTAATATTCT ... GCATGTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.95 | 8 | 30 | 14 |
| A2 | 84.21 | 6 | 32 | 10 |
| A3 | 74.49 | 25 | 73 | 2 |
| A4 | 68.57 | 11 | 24 | 6 |
| A5 | 82.14 | 5 | 23 | 2 |
| A6 | 75.44 | 210 | 645 | 90 |
| A7 | 75.77 | 182 | 569 | 73 |
| A8 | 74.03 | 254 | 724 | 150 |
| A9 | 76.33 | 164 | 529 | 81 |
| A10 | 73.42 | 147 | 406 | 66 |
>TRINITY_DN116890_c0_g1_i13 from sample A2 / Example spliced isoformGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCGGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTCACTTGGTTT
TGTGCTTCGTTTTCTCTGCGGCATGAGGCATCTTGGAGTAATTCCCGTGGATGATAAGCTTGAGAATTCAATCCTTCCCCCGAAAGATCGCTGACGTAGACGCGGAGGTCAATCATTTATTCTGACTCCTCTCCTCCTCTGCGACTATGAAACCCTGTTCGCCTGTATGCCTCCGCTCTCCCCCTATGCGACTATGAAAC
CCCGTTAGCGAGCAGTTATGGGCAGCCTAACTAGTTTTAACAATGCGTACGTATGTAACCAGTGTTTCAAATCCCAGCGGAGTAGAGCGATCTGGTGAAGAAATGCCGGATGCTCCCCATACCAGCAGAATTGCCTCCATTTCATATAACCCCGTGGCGGTATTTTAATTCACAATATTATTGAAA
>TRINITY_DN116890_c0_g1_i12 from sample A2 / Example unspliced isoform:GAGGTAGGGTCTTTGCTCTTCAATGGAGGACGCACAGTATCATTCTGCAATAAACTTTTTGGTTTATTAAAATCTCTTATTTGTTTTTTACTCGGCTATTACTTGTTATTGTTACAGGCATCTTGGAGTAATTCCCGTGGATGATAAGCTTGAGAATTCAATCCTTCCCCCGAAAGATCGCTGACGTAGACGCGGAGGTC
AATCATTTATTCTGACTCCTCTCCTCCTCTGCGACTATGAAACCCTGTTCGCCTGTATGCCTCCGCTCTCCCCCTATGCGACTATGAAACCCCGTTAGCGAGCAGTTATGGGCAGCCTAACTAGTTTTAACAATGCGTACGTATGTAACCAGTGTTTCAAATCCCAGCGGAGTAGAGCGATCTGGTGAAGAAgtaatatt
ctctgatcctcgaatcttatctcaatgaaaaataagtactattctgtgatttgtgaaccgtatctcattgaaaaagcgacagaatggcgtcgctgattgtatggagttttatgtgttatttaaatgatataattcctctttatcgccaaaattcaaatttcacatattgttgttttagggttcgacgcatgtaaagATGC
CGGATGCTCCCCATACCAGCAGAATTGCCTCCATTTCATATAACCCCGTGGCGGTATTTTAATTCACAATATTATTGAAA
Intron 2 GTAGGGTTTT ... ATTGTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.41 | 22.9 | 10.7 | 45.2 |
| A2 | 73.98 | 15.1 | 9.1 | 43 |
| A3 | 65.17 | 15 | 9.5 | 28.1 |
| A4 | 72.77 | 14.3 | 9.3 | 38.1 |
| A5 | 67.4 | 12.1 | 7.1 | 25.1 |
| A6 | 52.91 | 28.5 | 0.2 | 32 |
| A7 | 54.17 | 47.1 | 4.1 | 55.7 |
| A8 | 50.67 | 46.8 | 5.6 | 48.1 |
| A9 | 53.42 | 34 | 4.3 | 39 |
| A10 | 54.31 | 37.1 | 5.3 | 44.1 |
>TRINITY_DN109015_c4_g3_i1 from sample A3 / Example spliced isoformCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCGGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTCACTTGGTTTTGTGCT
TCGTTTTCTCTGCGGCATGAGGAAGGGTTTTTTCCATCTCCATCTCTGGTTAAGCTTTCTTCAATGGAGGACGCACGGTATCATTCTGCAATAAAAAATTTGGTTTATGAAAATCTCTTATTTGTTACAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGC
GTAAGGAGCTTGACTCACAAACCTGGTATGCATCTATATAAGTTGTTTTCGTTTTACACATTAATAGTTCACATTGGATTTCATTTCCGAAAGCGGATATTGAATGGGTTTAAGGATTAGGGTTTCCAATATGAGTATGAGCTTGTATGTTTAATATACTATATATAATTTGAGCTTTGTCATTATTTTGCATAGAGTAT
TGCTTTGGGCGATAGGCCGAAACTTGCTCTCTAGATTTGGGGCGGTAGCAACGCAAGAGGCAGGAAGCAACAATGAAGTTGATGATCCAGTTATAGATTTTGAAAGCTAAGGCAACGATAACAACGTAGTGCCTGATCAAGTTTGTCATAAATCTGAAATCGTTGAAGATTAAACAACACATCTGCTAAAATAACGATTG
GCCTCAACTCTTATCTTTTTGTAGTTATATGAGCCGCGTCTAAGTTTCATCTATGGTTGGTTAGGAAGCTTGCAATATTCCCTTTCTTGATTCATTCAGGTCTGGAATACTCACTACTTTAGTTGATAAAAGCAACGACGGAAAAACCTAATGTTGAAGCCATAAGAAATTAAAATCAAATGCTCATTTGAATACATGCT
TATTGTCGGTCAACAATTCATTCGTAAAATCTTTAATGGTTAATGGGATCATGCATCGCTCGTTGTGCAGATAGACTTAAATGCATATGAGTCAATGGTGCTATTGCTATCTAATTTTCTGATTCATTTGTATCGCCCAAGTGAAGTGTACATTATGTGGAAAACCATTGTAATGTTTGATTATTTTTATTTTTATTATT
AACCAAACCTTCCATAAGTTGGTTTTTAATTATTTAATTTTTTTATTCGAAAAAAGTCAATGTGCTATAAGAATATGCCATGTGGTTACACTTGAGGCGACCCTCAATGTTCTAGATATCCTAAATGAATTGAATTGCTTCTGTGATTGGATGGATTTTGGTCGCTCATAAACTTACCATTTGTCACCTTGGTTATAGCC
TTTTTGTGATTCATTCTCGATGATGAACTTTTAATTTTGCATGTTGGGAAAATATATTGATATATATATATAAGCATCCAGTCATGATATATATATATATTGTGAATATATATATATATATATTGATTATATCCACGT
>TRINITY_DN109015_c4_g3_i6 from sample A3 / Example unspliced isoform:TTCGTTTTATCTGCGGCATGAGgtagggtttttgcatctccatattcggttaagctttcttcaatggaggatgcacggtatcattctgcaataagctttttggtttatgaaaatctcttatttgtttattactcggttgttacttgttattgttatagGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGT
CTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCGGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTCACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGAAGGGTTTTTTCCATCTCCATCTCTGGTTAAGCTTTCTTCAATGG
AGGACGCACGGTATCATTCTGCAATAAAAAATTTGGTTTATGAAAATCTCTTATTTGTTACAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGGTATGCATCTATATAAGTTGTTTTCGTTTTACACATTAATAG
TTCACATTGGATTTCATTTCCGAAAGCGGATATTGAATGGGTTTAAGGATTAGGGTTTCCAATATGAGTATGAGCTTGTATGTTTAATATACTATATATAATTTGAGCTTTGTCATTATTTTGCATAGAGTATTGCTTTGGGCGATAGGCCGAAACTTGCTCTCTAGATTTGGGGCGGTAGCAACGCAAGAGGCAGGAAG
CAACAATGAAGTTGATGATCCAGTTATAGATTTTGAAAGCTAAGGCAACGATAACAACGTAGTGCCTGATCAAGTTTGTCATAAATCTGAAATCGTTGAAGATTAAACAACACATCTGCTAAAATAACGATTGGCCTCAACTCTTATCTTTTTGTAGTTATATGAGCCGCGTCTAAGTTTCATCTATGGTTGGTTAGGAA
GCTTGCAATATTCCCTTTCTTGATTCATTCAGGTCTGGAATACTCACTACTTTAGTTGATAAAAGCAACGACGGAAAAACCTAATGTTGAAGCCATAAGAAATTAAAATCAAATGCTCATTTGAATACATGCTTATTGTCGGTCAACAATTCATTCGTAAAATCTTTAATGGTTAATGGGATCATGCATCGCTCGTTGTG
CAGATAGACTTAAATGCATATGAGTCAATGGTGCTATTGCTATCTAATTTTCTGATTCATTTGTATCGCCCAAGTGAAGTGTACATTATGTGGAAAACCATTGTAATGTTTGATTATTTTTATTTTTATTATTAACCAAACCTTCCATAAGTTGGTTTTTAATTATTTAATTTTTTTATTCGAAAAAAGTCAATGTGCTA
TAAGAATATGCCATGTGGTTACACTTGAGGCGACCCTCAATGTTCTAGATATCCTAAATGAATTGAATTGCTTCTGTGATTGGATGGATTTTGGTCGCTCATAAACTTACCATTTGTCACCTTGGTTATAGCCTTTTTGTGATTCATTCTCGATGATGAACTTTTAATTTTGCATGTTGGGAAAATATATTGATATATAT
ATATAAGCATCCAGTCATGATATATATATATATTGTGAATATATATATATATATATTGATTATATCCACGT
Intron 3 GTGAGATGTT ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.76 | 8 | 11 | 10 |
| A2 | 72.97 | 5 | 17 | 10 |
| A3 | 64.71 | 3 | 8 | 3 |
| A4 | 38.46 | 8 | 5 | 5 |
| A5 | 71.43 | 1 | 2 | 3 |
| A6 | 21.43 | 22 | 2 | 10 |
| A7 | 28 | 18 | 4 | 10 |
| A8 | 46.88 | 34 | 24 | 36 |
| A9 | 28.57 | 30 | 10 | 14 |
| A10 | 50 | 15 | 13 | 17 |
>TRINITY_DN44627_c1_g1_i2 from sample A9 / Example spliced isoformATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAA
TTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGATATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGA
GATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCGAATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTA
TTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCA
CATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTA
TGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGGTAAGTAAGTGGTTAACAATTTAGTGTCATTTGTAAATTATTTTTCCTTACTATACACATATATATATATTGCTAATATTTTTGATGATTTTAAAACTTGTAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTT
GCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGAT
TTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACT
TCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGC
CATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATT
GATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
>TRINITY_DN44627_c1_g1_i9 from sample A9 / Example unspliced isoform:ATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAA
TTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGATATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGA
GATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCGAATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTA
TTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCA
CATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTA
TGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGA
CGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGA
ATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTAT
AACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGGTAACTATTTCAACAATCACAATGCATAGTATTTAACCATGTTACTATATTGTTTATTCATGCATGTATAACTATTTCCCCATTTGGTGATTGCAGCCATTAGC
GGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAgtgagatgttcattaatgaccaagtttttttattcaatttatccaaacatgtttatcaatgttgaattgttgtattaattgagatatgatcttttatttgcagAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTC
ACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTG
ATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
Intron 4 GTTCGTGGCG ... TTTGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 86.17 | 7 | 47 | 40.3 |
| A2 | 83.32 | 5 | 30 | 20 |
| A3 | 80.74 | 6 | 32 | 18.3 |
| A4 | 84.66 | 5 | 34 | 21.3 |
| A5 | 95.35 | 1 | 30 | 11 |
| A6 | 91.33 | 4 | 65 | 19.3 |
| A7 | 88.57 | 10 | 119 | 36 |
| A8 | 85.39 | 13 | 112 | 40 |
| A9 | 81.87 | 9 | 66 | 15.3 |
| A10 | 90.67 | 6 | 94 | 22.7 |
>TRINITY_DN44627_c1_g1_i15 from sample A9 / Example spliced isoformATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGGTATGC
ATCTATATAAGTTGTTTTCGTTTTACACATTAATAGTTCACATTGGATTTCATTTCCGAAAGCGGATATTGAATGGGTTTAAGGATTAGGGTTTCCAATATGAGTATGAGCTTGTATGTTTAATATACTATATATAATTTGAGCTTTGTCATTATTTTGCATAGAGTATTGCTTTGGGCGATAGGCCGAAACTTGCTCTC
TAGATTTGGGGCGGTAGCAACGCAAGAGGCAGGAAGCAACAATGAAGTTGATGATCCAGTTATAGATTTTGAAAGCTAAGGCAACGATAACAACGTAGTGCCTGATCAAGTTTGTCATAAATCTGAAATCGTTGAAGATTAAACAACACATCTGCTAAAATAACGATTGGCCTCAACTCTTATCTTTTTGTAGTTATATG
AGCCGCGTCTAAGTTTCATCTATGGTTGGTTAGGAAGCTTGCAATATTCCCTTTCTTGATTCATTCAGGTCTGGAATACTCACTACTTTAGTTGATAAAAGCAACGACGGAAAAACCTAATGTTGAAGCCATAAGAAATTAAAATCAAATGCTCATTTGAATACATGCTTATTGTCGGTCAACAATTCATTCGTAAAATC
TTTAATGGTTAATGGGATCATGCATCGCTCGTTGTGCAGATAGACTTAAATGCATATGAGTCAATGGTGCTATTGCTATCTAATTTTCTGATTCATTTGTATCGCCCAAGTGAAGTGTACATTATGTGGAAAACCATTGTAATGTTTGATTATTTTTATTTTTATTATTAACCAAACCTTCCATAAGTTGGTTTTTAATT
ATTTAATTTTTTTTATTCGAAAAAAG
>TRINITY_DN44627_c1_g1_i18 from sample A9 / Example unspliced isoform:ATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGgttcgtggcggtttttgttctttttagcaacaataaaacttagatctgatcaatggccgtccatttaaaaccctggttcttcaacaatcgtttctatattc
acttggttttgtgcttcgttttctctgcggcatgaggaagggttttttccatctccatctctggttaagctttcttcaatggaggacgcacggtatcattctgcaataaaaaatttggtttatgaaaatctcttatttgttacagGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAA
AAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAATTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGA
TATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGAGATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCG
AATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTATTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCT
GCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACC
ACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAG
ACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCT
TCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTC
TATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATA
CAAAGCCATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGA
AAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
Intron 5 GTTCGTGGCG ... GCGGCATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.52 | 7 | 47 | 29.5 |
| A2 | 82.59 | 5 | 30 | 17.5 |
| A3 | 82.52 | 6 | 32 | 24.7 |
| A4 | 82.84 | 5 | 34 | 14.3 |
| A5 | 96 | 1 | 30 | 18 |
| A6 | 92.77 | 4 | 65 | 37.7 |
| A7 | 90.64 | 10 | 119 | 74.7 |
| A8 | 87.51 | 13 | 112 | 70.2 |
| A9 | 85.14 | 9 | 66 | 37.2 |
| A10 | 92.48 | 6 | 94 | 53.7 |
>TRINITY_DN44627_c1_g1_i15 from sample A9 / Example spliced isoformATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGGTATGC
ATCTATATAAGTTGTTTTCGTTTTACACATTAATAGTTCACATTGGATTTCATTTCCGAAAGCGGATATTGAATGGGTTTAAGGATTAGGGTTTCCAATATGAGTATGAGCTTGTATGTTTAATATACTATATATAATTTGAGCTTTGTCATTATTTTGCATAGAGTATTGCTTTGGGCGATAGGCCGAAACTTGCTCTC
TAGATTTGGGGCGGTAGCAACGCAAGAGGCAGGAAGCAACAATGAAGTTGATGATCCAGTTATAGATTTTGAAAGCTAAGGCAACGATAACAACGTAGTGCCTGATCAAGTTTGTCATAAATCTGAAATCGTTGAAGATTAAACAACACATCTGCTAAAATAACGATTGGCCTCAACTCTTATCTTTTTGTAGTTATATG
AGCCGCGTCTAAGTTTCATCTATGGTTGGTTAGGAAGCTTGCAATATTCCCTTTCTTGATTCATTCAGGTCTGGAATACTCACTACTTTAGTTGATAAAAGCAACGACGGAAAAACCTAATGTTGAAGCCATAAGAAATTAAAATCAAATGCTCATTTGAATACATGCTTATTGTCGGTCAACAATTCATTCGTAAAATC
TTTAATGGTTAATGGGATCATGCATCGCTCGTTGTGCAGATAGACTTAAATGCATATGAGTCAATGGTGCTATTGCTATCTAATTTTCTGATTCATTTGTATCGCCCAAGTGAAGTGTACATTATGTGGAAAACCATTGTAATGTTTGATTATTTTTATTTTTATTATTAACCAAACCTTCCATAAGTTGGTTTTTAATT
ATTTAATTTTTTTTATTCGAAAAAAG
>TRINITY_DN44627_c1_g1_i2 from sample A9 / Example unspliced isoform:ATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGgttcgtggcggtttttgttctttttagcaacaataaaacttagatctgatcaatggccgtccatttaaaaccctggttcttcaacaatcgtttctatattc
acttggttttgtgcttcgttttctctgcggcatgagGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAA
TTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGATATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGA
GATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCGAATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTA
TTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCA
CATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTA
TGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGGTAAGTAAGTGGTTAACAATTTAGTGTCATTTGTAAATTATTTTTCCTTACTATACACATATATATATATTGCTAATATTTTTGATGATTTTAAAACTTGTAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTT
GCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGAT
TTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACT
TCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGC
CATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATT
GATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
Intron 6 GTTCTGACTG ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.72 | 7 | 5 | 10 |
| A2 | 80 | 3 | 14 | 10 |
| A3 | 81.82 | 1 | 6 | 3 |
| A4 | 33.33 | 8 | 3 | 5 |
| A5 | 77.78 | 1 | 4 | 3 |
| A6 | 38.89 | 11 | 4 | 10 |
| A7 | 37.5 | 15 | 8 | 10 |
| A8 | 43.26 | 40 | 25 | 36 |
| A9 | 30.43 | 32 | 14 | 14 |
| A10 | 64 | 9 | 15 | 17 |
>TRINITY_DN44627_c1_g1_i21 from sample A9 / Example spliced isoformATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAA
TTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGATATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGA
GATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCGAATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTA
TTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCA
CATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTA
TGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGA
CGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGA
ATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTAT
AACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGCCATTAGCGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTT
GACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTGATTGCTTTGCCATATTTTGTATT
ACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
>TRINITY_DN44627_c1_g1_i9 from sample A9 / Example unspliced isoform:ATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAA
TTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGATATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGA
GATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCGAATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTA
TTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCA
CATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTA
TGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGA
CGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGA
ATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTAT
AACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGGTAACTATTTCAACAATCACAATGCATAGTATTTAACCATGTTACTATATTGTTTATTCATGCATGTATAACTATTTCCCCATTTGGTGATTGCAGCCATTAGC
GGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGgttctgactgggtctcctcttctagtgagatgttcattaatgaccaagtttttttattcaatttatccaaacatgtttatcaatgttgaattgttgtattaattgagatatgatcttttatttgcagAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTC
ACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTG
ATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
Intron 7 GTAATATTCT ... GTTGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.95 | 8 | 30 | 12 |
| A2 | 86.55 | 5 | 32 | 11 |
| A3 | 74.49 | 25 | 73 | 2 |
| A4 | 68.57 | 11 | 24 | 6 |
| A5 | 82.14 | 5 | 23 | 2 |
| A6 | 75.7 | 207 | 645 | 86 |
| A7 | 75.06 | 189 | 569 | 66.5 |
| A8 | 73.93 | 255.5 | 724 | 127.5 |
| A9 | 76.06 | 166.5 | 529 | 81 |
| A10 | 74.16 | 141.5 | 406 | 67.5 |
>TRINITY_DN116890_c0_g1_i8 from sample A2 / Example spliced isoformGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCGGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTCACTTGGTTT
TGTGCTTCGTTTTCTCTGCGGCATGAGGCATCTTGGAGTAATTCCCGTGGATGATAAGCTTGAGAATTCAATCCTTCCCCCGAAAGATCGCTGACGTAGACGCGGAGGTCAATCATTTATTCTGACTCCTCTCCTCCTCTGCGACTATGAAACCCTGTTCGCCTGTATGCCTCCGCTCTCCCCCTATGCGACTATGAAAC
CCCGTTAGCGAGCAGTTATGGGCAGCCTAACTAGTTTTAACAATGCGTACGTATGTAACCAGTGTTTCAAATCCCAGCGGAGTAGAGCGATCTGGTGAAGAAGGTTCGACGCATGTAAAGATGCCGGATGCTCCCCATACCAGCAGAATTGCCTCCATTTCATATAACCCCGTGGCGGTATTTTAATTCACAATATTATT
GAAA
>TRINITY_DN116890_c0_g1_i12 from sample A2 / Example unspliced isoform:GAGGTAGGGTCTTTGCTCTTCAATGGAGGACGCACAGTATCATTCTGCAATAAACTTTTTGGTTTATTAAAATCTCTTATTTGTTTTTTACTCGGCTATTACTTGTTATTGTTACAGGCATCTTGGAGTAATTCCCGTGGATGATAAGCTTGAGAATTCAATCCTTCCCCCGAAAGATCGCTGACGTAGACGCGGAGGTC
AATCATTTATTCTGACTCCTCTCCTCCTCTGCGACTATGAAACCCTGTTCGCCTGTATGCCTCCGCTCTCCCCCTATGCGACTATGAAACCCCGTTAGCGAGCAGTTATGGGCAGCCTAACTAGTTTTAACAATGCGTACGTATGTAACCAGTGTTTCAAATCCCAGCGGAGTAGAGCGATCTGGTGAAGAAgtaatatt
ctctgatcctcgaatcttatctcaatgaaaaataagtactattctgtgatttgtgaaccgtatctcattgaaaaagcgacagaatggcgtcgctgattgtatggagttttatgtgttatttaaatgatataattcctctttatcgccaaaattcaaatttcacatattgttgttttagGGTTCGACGCATGTAAAGATGC
CGGATGCTCCCCATACCAGCAGAATTGCCTCCATTTCATATAACCCCGTGGCGGTATTTTAATTCACAATATTATTGAAA
Intron 8 GTAACTATTT ... GTGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.39 | 9.5 | 23 | 4 |
| A2 | 91.95 | 1.5 | 21 | 13 |
| A3 | 100 | 0 | 11 | 10 |
| A4 | 58.44 | 6 | 9 | 6 |
| A5 | 100 | 0 | 19 | 13 |
| A6 | 54.16 | 9.5 | 13 | 8 |
| A7 | 53.7 | 13 | 18 | 10 |
| A8 | 43.56 | 36.5 | 36 | 19 |
| A9 | 50.27 | 15.5 | 19 | 11 |
| A10 | 68.66 | 6.5 | 16 | 12 |
>TRINITY_DN44627_c1_g1_i4 from sample A9 / Example spliced isoformATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGAAGGGTTTTTTCCATCTCCATCTCTGGTTAAGCTTTCTTCAATGGAGGACGCACGGTATCATTCTGCAATAAAAAATTTGGTTTATGAAAATCTCTTATTTGTTACAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAA
AAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAATTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGA
TATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGAGATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCG
AATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTATTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCT
GCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACC
ACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAG
ACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGTAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCT
TCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTC
TATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATA
CAAAGCCATTAGCGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATG
>TRINITY_DN44627_c1_g1_i9 from sample A9 / Example unspliced isoform:ATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAA
TTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGATATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGA
GATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCGAATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTA
TTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCA
CATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTA
TGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAGACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGA
CGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGA
ATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTAT
AACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGgtaactatttcaacaatcacaatgcatagtatttaaccatgttactatattgtttattcatgcatgtataactatttccccatttggtgattgcagCCATTAGC
GGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAGTGAGATGTTCATTAATGACCAAGTTTTTTTATTCAATTTATCCAAACATGTTTATCAATGTTGAATTGTTGTATTAATTGAGATATGATCTTTTATTTGCAGAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTC
ACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATTGATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTG
ATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
Intron 9 GTAAGTAAGT ... AAACTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 6 | 6 |
| A2 | 38.89 | 11 | 11 | 3 |
| A3 | 100 | 0 | 6 | 2 |
| A4 | 81.82 | 1 | 4 | 5 |
| A5 | 80 | 1 | 4 | 4 |
| A6 | 66.67 | 3 | 6 | 6 |
| A7 | 70 | 3 | 4 | 10 |
| A8 | 53.33 | 7 | 7 | 9 |
| A9 | 25.93 | 10 | 5 | 2 |
| A10 | 44.68 | 13 | 11 | 10 |
>TRINITY_DN44627_c1_g1_i4 from sample A9 / Example spliced isoformATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGAAGGGTTTTTTCCATCTCCATCTCTGGTTAAGCTTTCTTCAATGGAGGACGCACGGTATCATTCTGCAATAAAAAATTTGGTTTATGAAAATCTCTTATTTGTTACAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAA
AAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAATTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGA
TATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGAGATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCG
AATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTATTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCT
GCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCACATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACC
ACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTATGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGTTGCTACAAGAAGGGCATAGGATTGAAG
ACCTTTGCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGTAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCT
TCTGATTTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTC
TATACTTCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATA
CAAAGCCATTAGCGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATG
>TRINITY_DN44627_c1_g1_i2 from sample A9 / Example unspliced isoform:ATTCATTTGGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAGCTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCCGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTC
ACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGTGACGACCATGGATGCACACTCATACATCCAAAGAGAAATTCAGAGGCTCAGAGAAATTCGAGCCTCAA
TTACTATTGTTGATGATAGACATCTTATGCTTGCATCCAATTTGGATGCAATGATAGAGAGCTTTAGTAGGTCTGATGGTGCACTGTAAGATATTTCCACATTTAGAGAAAGAAAGAGGCAACAGTATTAGGATGGACTTAGCTACAAAGAAGTCAAGAAGTTGAAAATCTCAAAACAACAGATATTTTCCCTCTTTAGA
GATCCATGGACGGGTGAAATCCTAAATGCAAACAAAAGGCACATTTATATCGAGTGGTGTACATATCAAACCTTCATAGATAACTGGATCGAATGATGGTACATGGTGTTTGATGCACCACCACACAACAATAGGGAAATGCCCCTATATTTTTTGAGAAAGACGTATGCAGAATTTGTGATGGGGAAGCATGTTAACTA
TTTTGATATCTTGGAGTACCAGGGCATTGGGATGGGGATGCCTCAACAATGTCCCAATGCAATGCACATAAATCCCAATCGCCCAGTAGCTGCACCTCGTGGGAAGATACCCAGGCCAAATGTGCCGCCTGCACATTAGTTGGTCCCAGAGACACGGGATTCCTTCCTACTGTTGGCACAAATGGTTGTTCACCATAGCA
CATATCTTCAAGGTACGTACTAGGAAGGGCCATCAGAGCCACCATCTATGGGTGGAGTAGAGCCACCACCTATCTTTGGGGTAGATCCACCACGTCCCGGTGGAGTAGAGCCACCACCTTCCAGTGGTGGAGAAGCATCTTGTAGTGGCCCTAGACCTTTACATCATGAGAACAACCAAGAGTCGTACCCATGCACAGTA
TGAGGCCATCCTTGCTTTGGTCTTGCCCAAATAGATGATACCTTTACTGGGTATTTCACACAGgtaagtaagtggttaacaatttagtgtcatttgtaaattatttttccttactatacacatatatatatattgctaatatttttgatgattttaaaacttgtagTTGCTACAAGAAGGGCATAGGATTGAAGACCTTT
GCACCGATGATGCAGAGCATAGTCCACAGGCTCATGCACCAGCACCAGAAGGGCCTGAGGGGAAAGAGGGGCAAGAGGCTCATGTAGTAGCACTTCCCAATGACGATGATGTTGTCATACTTTCAGTGGCAACATCTCACGTTGAGTTGCTACCAGAAGGACATGAGGGGAAAGAGGCTCATGCAGCAGAACCTTCTGAT
TTAGAAGATGTTGTCATACCTTCAGCAACAACATCTCACGTTGAGGTTGTAGATCCCCATCAGAGGGAAATGATTTCATCTAGTGAGCTCCCCCTTGGTGGGAATACAACTTATAGCGTGCCCATGGAGATACAATAGATGACAAACCGTTTCTTAGAATTGATTGAAGTATACAGTACATTGCCACTAGCCTCTATACT
TCATAGACTTTCAGTAGTTGGATCTCCTCATAGTCCAAATGTGAAAAAGGAACAAGTGTATAAGAGAGGCTCCACTCCTAGAAAGGGTGTGGATGTCCTCTATAACAGACACACGAGAGATCCATCTATACCTCACCTAACAAGGGTCATTGATGCTCCAGTTAGTGCCGCATCTGCAATAGGCACACGTCATACAAAGC
CATTAGTGGCAGAAGTGCCCGGCCCCTCTACTCAATCCATGGTTCTGACTGGGTCTCCTCTTCTAAGCACAACTATAGAGAGGCCTTCCATGAGCACACTACTCACAACTATACCCCATGAGGATTTGACTCGTGAGATGCAGAGCGATCCCAGGGAGATGGTCGATAGAGGAAAGTCATGGAAAAACAGGCGAAAGATT
GATTTTTGATGTTGCATAGTCTTGTATATATGTATTTTGACATGTACATGTACACATTGTTGTACTTAGGGATACATGTACATTGACAGGCCATTTGAGGGCTGATTGCTTTGCCATATTTTGTATTACAAACATTTGACTATCAATGTGTGATACAATATATTCCATATTTTCTCTTGAGTTTCC
Intron 10 GTATGCATCT ... TTTTGCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.76 | 10.1 | 27.1 | 36 |
| A2 | 67.57 | 9.1 | 13.7 | 24 |
| A3 | 70.61 | 7.6 | 16.4 | 19 |
| A4 | 70.82 | 12.4 | 27.1 | 33 |
| A5 | 67.74 | 4 | 5.8 | 11 |
| A6 | 46.22 | 20 | 14.4 | 20 |
| A7 | 37.6 | 58.4 | 27.4 | 43 |
| A8 | 44.07 | 50.1 | 33 | 46 |
| A9 | 21.6 | 31.3 | 11.2 | 6 |
| A10 | 39.15 | 43.6 | 25 | 31.1 |
>TRINITY_DN116890_c0_g1_i11 from sample A2 / Example spliced isoformGTTTTGCGCTTCGTTTTATCTGCGGCATGAGGTAGGGTTTTTGCATCTCCATATTCGGTTAAGCTTTCTTCAATGGAGGATGCACGGTATCATTCTGCAATAAGCTTTTTGGTTTATGAAAATCTCTTATTTGTTTATTACTCGGTTGTTACTTGTTATTGTTATAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAG
CTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCGGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTCACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGAAGGGTTTTTTCCATCTCCATCTCTGGTTAAGCTTT
CTTCAATGGAGGACGCACGGTATCATTCTGCAATAAAAAATTTGGTTTATGAAAATCTCTTATTTGTTACAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGAGTATTGCTTTGGGCGATAGGCCGAAACTTGCT
CTCTAGATTTGGGGCGGTAGCAACGCAAGAGGCAGGAAGCAACAATGAAGTTGATGATCTAGTTATAGATTTTGAAAGCTAAGGCAACGATAACAACGTAGTGCCTGATCAAGTTTGTCATAAATCTGAAATCGTTGAAGATTAAACAACACATCTGCTAAAATAACGATTGGCCTCAACTCTTATCTTTTTGTAGTTAT
ATGAGCCGCGTCTAAGTTTCATCTATGGTTGGTTAGGAAGCTTGCAATATTCCCTTTCTTGATTCATTCAGGTCTGGAATACTCACTACTTTAGTTGATAAAAGCAACGACGGAAAAACCTAATGTTGAAGCCATAAGAAATTAAAATCAAATGCTCATTTGAATACATGCTTATTGTCGGTCAACAATTCATTCGTAAA
ATCTTTAATGGTTAATGGGATCATGCATCGCTCGTTGTGCAGATAGACTTAAATGCATATGAGTCAATGGTGCTATTGCTATCTAATTTTCTGATTCATTTGTATCGCCCAAGTGAAGTGTACATTATGTGGAAAACCATTGTAATGTTTGATTATTTTTATTTTTATTATTAACCAAACCTTCCATAAGTTGGTTTTTA
ATTATTTAATTTTTTTATTCGAAAAAAGTCAATGTGCTATAAGAATATGCCATGTGGTTACACTTGAGGCGACCCTCAATGTTCTAGATATCCTAAATGAATTGAATTGCTTCTGTGATTGGATGGATTTTGGTCGCTCATAAACTTACCATTTGTCACCTTGGTTATAGCCTTTTTGTGATTCATTCTCGATGATGAAC
TTTTAATTTTGCATGTTGGGAAAATATATTGATATATATATATAAGCATCCAGTCATGATATATATATATATTGTGAATATATCTATATATATATATATATTGATTATATCAATA
>TRINITY_DN116890_c0_g1_i9 from sample A2 / Example unspliced isoform:GTTTTGCGCTTCGTTTTATCTGCGGCATGAGGTAGGGTTTTTGCATCTCCATATTCGGTTAAGCTTTCTTCAATGGAGGATGCACGGTATCATTCTGCAATAAGCTTTTTGGTTTATGAAAATCTCTTATTTGTTTATTACTCGGTTGTTACTTGTTATTGTTATAGGAATTTTGGAGTATTCCCTGTGGTTCGTGGCAG
CTACAGGGTCTGGTGTAACGGTTTTGGTTCGTGGCGGTTTTTGTTCTTTTTAGCAACAATAAAACTTAGATCTGATCAATGGCGGTCCATTTAAAACCCTGGTTCTTCAACAATCGTTTCTATATTCACTTGGTTTTGTGCTTCGTTTTCTCTGCGGCATGAGGAAGGGTTTTTTCCATCTCCATCTCTGGTTAAGCTTT
CTTCAATGGAGGACGCACGGTATCATTCTGCAATAAAAAATTTGGTTTATGAAAATCTCTTATTTGTTACAGGCATTTTGGAGTATTCCTCGTGGATGATAATCTTGAGAGTTCAATCCTTCCCCAAAAGATCGTTGACAGCGTAAGGAGCTTGACTCACAAACCTGgtatgcatctatataagttgttttcgttttaca
cattaatagttcacattggatttcatttccgaaagcggatattgaatgggtttaaggattagggtttccaatatgagtatgagcttgtatgtttaatatactatatataatttgagctttgtcattattttgcatagAGTATTGCTTTGGGCGATAGGCCGAAACTTGCTCTCTAGATTTGGGGCGGTAGCAACGCAAGA
GGCAGGAAGCAACAATGAAGTTGATGATCTAGTTATAGATTTTGAAAGCTAAGGCAACGATAACAACGTAGTGCCTGATCAAGTTTGTCATAAATCTGAAATCGTTGAAGATTAAACAACACATCTGCTAAAATAACGATTGGCCTCAACTCTTATCTTTTTGTAGTTATATGAGCCGCGTCTAAGTTTCATCTATGGTT
GGTTAGGAAGCTTGCAATATTCCCTTTCTTGATTCATTCAGGTCTGGAATACTCACTACTTTAGTTGATAAAAGCAACGACGGAAAAACCTAATGTTGAAGCCATAAGAAATTAAAATCAAATGCTCATTTGAATACATGCTTATTGTCGGTCAACAATTCATTCGTAAAATCTTTAATGGTTAATGGGATCATGCATCG
CTCGTTGTGCAGATAGACTTAAATGCATATGAGTCAATGGTGCTATTGCTATCTAATTTTCTGATTCATTTGTATCGCCCAAGTGAAGTGTACATTATGTGGAAAACCATTGTAATGTTTGATTATTTTTATTTTTATTATTAACCAAACCTTCCATAAGTTGGTTTTTAATTATTTAATTTTTTTATTCGAAAAAAGTC
AATGTGCTATAAGAATATGCCATGTGGTTACACTTGAGGCGACCCTCAATGTTCTAGATATCCTAAATGAATTGAATTGCTTCTGTGATTGGATGGATTTTGGTCGCTCATAAACTTACCATTTGTCACCTTGGTTATAGCCTTTTTGTGATTCATTCTCGATGATGAACTTTTAATTTTGCATGTTGGGAAAATATATT
GATATATATATATAAGCATCCAGTCATGATATATATATATATTGTGAATATATCTATATATATATATATATTGATTATATCAATA