sp|Q8LFV3|CDF3_ARATH ----> Cyclic dof factor 3
Intron 1 GTTGTGCTTA ... TACATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.84 | 112 | 26 | 12.5 |
| A2 | 15.65 | 97 | 18 | 13.5 |
| A3 | 21.78 | 79 | 22 | 6.5 |
| A4 | 18.29 | 67 | 15 | 11 |
| A5 | 22.22 | 28 | 8 | 2.5 |
| A6 | 12.54 | 272 | 39 | 31 |
| A7 | 11.8 | 426 | 57 | 37.5 |
| A8 | 10.85 | 501 | 61 | 57.5 |
| A9 | 9.72 | 353 | 38 | 43.5 |
| A10 | 9.89 | 246 | 27 | 23 |
>TRINITY_DN105114_c0_g1_i2 from sample A2 / Example spliced isoformGCCGAATGGATCTGTACGAGATACTGTCATTTCAATCGATTTAATACTGAATTTCAGTGAACATAAATTTCAACCTGGCAAATCCAAGAAAGGAACAAACGGTTAGCCCCTCTGCCTCTCTGACTCTCTATATGTATACATTGAGGAACACCGTGCCACGTTGTTACTATTCTCCGCCCCCACTTCTCCATGTCATGTGA
TCCAGGTCGTATGCTCATGGGGCTCTTTGGATAAAAGGACGTTCTTCCTCCATTAGCGGAAGCAAGCAGAGCGAGCGCAGGAGCCAGAGCAATGGGGAGCCCCTCCAACACCAATACAAGCGGTAATACCAACAAGGACCCCAATCCGGAAACCACTTCAAACCACGCAGGCAGCCCCCACGACTCCTCCAACGCTGGTA
TTGCCGATACCGCCAATCCTCCCACCGTTCTCCAACCAGACATCAAGGAGGGCAGCTCACCTCCACGCCACAGAGAAATCTACAAAATCCCCAGATACTCAAGTTGGTTTGCATGGGACAAAATTCATAGCACTGAACGGAGATTTCTAACGGAGTTCTTCGATGAGAAATCCGCTGCAAAGACCCCCAAAGTATACAAG
GATTACAGAGACTTTATCATCAACAGATACCGGGAAAATCTGCACAAGAGGATTAGTTTTACTGAGGTCAGGAAAATGCTGGCGGGGGACGTTAATTCGATAAGAAGGGTTTTTGATTTTCTGGACAATTGGGGTTTGATTAATTACCAGGTCACTTCTTCCAAACAACACACAAAAGCAGAGGAAAATGCTGGTGGTGG
GGGGGTGAAAGGGGCAGCGGCTAGGGTTTTGGGCCAGAAGGGTTTAGCGGCATCTGAGGGTGACCGTCCGCCTGGCGGGACTGCAATAGACAGCACGGTAATTGACGCAAAGGACAAGAAAGGGGCAGAATGTCAGAGTGGGCTTTTATGCAATAATTGCGGGGCCGACTGCTCTATTGCTCGCTTTGATTGCCTCAAGG
AAGTGATCAACCCCATGTCAAAAGATGAAGGCCTGTCCAAAGAGCCAGGAAATTCATCTGGTACTACTGATTGCAGTGTAGAAGGTGTAAAGACAATTAAGCAAGATCCAGAGAAAGAACTTCCTATAATGGCAATGGAAGAGGAGCCAAAAGATGAAAAAGGAGATGAAATGAACAAGGAAGAAGTTGAGCAAAACGAC
AATAAAGACAAGATGCTCAGAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAACAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGAACTATGAGAAATGTTCCTATAGGTGCCGGACGACGCAAGAACAAGCA
TTCAGGTACACATTATTGGCATACAATGAAGTCTGATGGCCTTACACCAGGTAGAACTGGTGCCTCTGATGCTGCCCATCATTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGCTTGGATTGTCTGCTTCTGATTTCAAGCGAGTTGAACTGAGAGAAGTGAGTCAACACAAGAGTGTGGATT
GGACAGATGAAGAAACTTTGCTACTTCTAGAAGCTATTTTTCTTCATAATGATGACTGGAAATGTGTTGCACAACATGTTGGTACCAAAAGTGAGGTGGATTGTGTTTCCAGATTTGTACAGCTTCCTTTGGGAGAGCAATATGTTGGCAACATTAGCAATGAAGGCAGTGATAGAAGATCAGGTAATGTTATAGGTGAA
AATACAGTAATCAAACAAGTTTCCAGTCCAAAGGACAGTAGTACCCAAGAACAGCACGACCATGTTAGCAATGACGATAAGCATACTACGGATGATGTATCAGGCCCTCCGCTTAAACGGAGGCATCTTACACCACTTGCTGATGCCAGCAATCCCATAATGGGTCAGGTAGCCTTCCTGTCTGCCATGGTTGGTTCCCA
TGTTGCAGAAGCTGCAGCACATGCAGCTATTGCAGCTTTGAGTGAGGAGGATCCTGCTTCAAGCCAGGTGACAAGTACCCGAGAGGCTGGGTGTCAAAATCAGAAAAATGGCTCTGGAGCGAGTGGTCTAGTGGGGTTTGCAAAAGATTTTGCGATGGAGGATAGCAAGAAGGAAACTCATGGAGGAACTGATCAAACTA
CCGAAGATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTTTGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAAGAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGAAGCTACAGGAAAGAATTCAGCGT
TTTGAGGAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATGCGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAAGGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGCTTGTATATGGATGATCCTTGAAT
AGTTCATATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATCTCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTATTTTAGAGCTTGATATTACTGCATGTGCAAAGATAATGTTTAATG
>TRINITY_DN105114_c0_g1_i3 from sample A2 / Example unspliced isoform:GCCGAATGGATCTGTACGAGATACTGTCATTTCAATCGATTTAATACTGAATTTCAGTGAACATAAATTTCAACCTGGCAAATCCAAGAAAGGAACAAACGGTTAGCCCCTCTGCCTCTCTGACTCTCTATATGTATACATTGAGGAACACCGTGCCACGTTGTTACTATTCTCCGCCCCCACTTCTCCATGTCATGTGA
TCCAGGTCGTATGCTCATGGGGCTCTTTGGATAAAAGGACGTTCTTCCTCCATTAGCGGAAGCAAGCAGAGCGAGCGCAGGAGCCAGAGCAATGGGGAGCCCCTCCAACACCAATACAAGCGGTAATACCAACAAGGACCCCAATCCGGAAACCACTTCAAACCACGCAGGCAGCCCCCACGACTCCTCCAACGCTGGTA
TTGCCGATACCGCCAATCCTCCCACCGTTCTCCAACCAGACATCAAGGAGGGCAGCTCACCTCCACGCCACAGAGAAATCTACAAAATCCCCAGATACTCAAGTTGGTTTGCATGGGACAAAATTCATAGCACTGAACGGAGATTTCTAACGGAGTTCTTCGATGAGAAATCCGCTGCAAAGACCCCCAAAGTATACAAG
GATTACAGAGACTTTATCATCAACAGATACCGGGAAAATCTGCACAAGAGGATTAGTTTTACTGAGGTCAGGAAAATGCTGGCGGGGGACGTTAATTCGATAAGAAGGGTTTTTGATTTTCTGGACAATTGGGGTTTGATTAATTACCAGGTCACTTCTTCCAAACAACACACAAAAGCAGAGGAAAATGCTGGTGGTGG
GGGGGTGAAAGGGGCAGCGGCTAGGGTTTTGGGCCAGAAGGGTTTAGCGGCATCTGAGGGTGACCGTCCGCCTGGCGGGACTGCAATAGACAGCACGGTAATTGACGCAAAGGACAAGAAAGGGGCAGAATGTCAGAGTGGGCTTTTATGCAATAATTGCGGGGCCGACTGCTCTATTGCTCGCTTTGATTGCCTCAAGG
AAGTGATCAACCCCATGTCAAAAGATGAAGGCCTGTCCAAAGAGCCAGGAAATTCATCTGGTACTACTGATTGCAGTGTAGAAGGTGTAAAGACAATTAAGCAAGATCCAGAGAAAGAACTTCCTATAATGGCAATGGAAGAGGAGCCAAAAGATGAAAAAGGAGATGAAATGAACAAGGAAGAAGTTGAGCAAAACGAC
AATAAAGACAAGATGCTCAGAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAACAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGAACTATGAGAAATGTTCCTATAGGTGCCGGACGACGCAAGAACAAGCA
TTCAGGTACACATTATTGGCATACAATGAAGTCTGATGGCCTTACACCAGGTAGAACTGGTGCCTCTGATGCTGCCCATCATTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGCTTGGATTGTCTGCTTCTGATTTCAAGCGAGTTGAACTGAGAGAAGTGAGTCAACACAAGAGTGTGGATT
GGACAGATGAAGAAACTTTGCTACTTCTAGAAGCTATTTTTCTTCATAATGATGACTGGAAATGTGTTGCACAACATGTTGGTACCAAAAGTGAGGTGGATTGTGTTTCCAGATTTGTACAGCTTCCTTTGGGAGAGCAATATGTTGGCAACATTAGCAATGAAGGCAGTGATAGAAGATCAGGTAATGTTATAGGTGAA
AATACAGTAATCAAACAAGTTTCCAGTCCAAAGGACAGTAGTACCCAAGAACAGCACGACCATGTTAGCAATGACGATAAGCATACTACGGATGATGTATCAGGCCCTCCGCTTAAACGGAGGCATCTTACACCACTTGCTGATGCCAGCAATCCCATAATGGGTCAGGTAGCCTTCCTGTCTGCCATGGTTGGTTCCCA
TGTTGCAGAAGCTGCAGCACATGCAGCTATTGCAGCTTTGAGTGAGGAGGATCCTGCTTCAAGCCAGGTGACAAGTACCCGAGAGGCTGGGTGTCAAAATCAGAAAAATGGCTCTGGAGCGAGTGGTCTAGTGGGGTTTGCAAAAGATTTTGCGATGGAGGATAGCAAGAAGGAAACTCATGGAGgttgtgcttacacat
tttgcttcgtggacttgcattttttgtaaattataacctctttttgttctaatttgctactaaacaagtcaaatattgtctttcaatatctatacatgatcagcttgaactataagcaactatattgtattttgaacttccaagaatcatctgcaaagtttagtggattggtatagcagcttccatcaagctgttttgaa
gcatcttcacttcataacatttattagaggcttctggaatgtcacatatttacattgcagGAACTGATCAAACTACCGAAGATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTTTGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAA
GAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGAAGCTACAGGAAAGAATTCAGCGTTTTGAGGAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATGCGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAA
GGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGCTTGTATATGGATGATCCTTGAATAGTTCATATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATCTCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTAT
TTTAGAGCTTGATATTACTGCATGTGCAAAGATAATGTTTAATG
Intron 2 GTACACATTA ... CATCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.81 | 53 | 114 | 65 |
| A2 | 70.49 | 27 | 65 | 64 |
| A3 | 70.04 | 34 | 88 | 71 |
| A4 | 69.3 | 35 | 64 | 94 |
| A5 | 72.41 | 16 | 48 | 36 |
| A6 | 74.4 | 16 | 44 | 49 |
| A7 | 70.12 | 49 | 119 | 111 |
| A8 | 67.8 | 38 | 83 | 77 |
| A9 | 68.36 | 53 | 132 | 97 |
| A10 | 64.05 | 55 | 113 | 83 |
>TRINITY_DN105114_c0_g1_i5 from sample A2 / Example spliced isoformGCCGAATGGATCTGTACGAGATACTGTCATTTCAATCGATTTAATACTGAATTTCAGTGAACATAAATTTCAACCTGGCAAATCCAAGAAAGGAACAAACGGTTAGCCCCTCTGCCTCTCTGACTCTCTATATGTATACATTGAGGAACACCGTGCCACGTTGTTACTATTCTCCGCCCCCACTTCTCCATGTCATGTGA
TCCAGGTCGTATGCTCATGGGGCTCTTTGGATAAAAGGACGTTCTTCCTCCATTAGCGGAAGCAAGCAGAGCGAGCGCAGGAGCCAGAGCAATGGGGAGCCCCTCCAACACCAATACAAGCGGTAATACCAACAAGGACCCCAATCCGGAAACCACTTCAAACCACGCAGGCAGCCCCCACGACTCCTCCAACGCTGGTA
TTGCCGATACCGCCAATCCTCCCACCGTTCTCCAACCAGACATCAAGGAGGGCAGCTCACCTCCACGCCACAGAGAAATCTACAAAATCCCCAGATACTCAAGTTGGTTTGCATGGGACAAAATTCATAGCACTGAACGGAGATTTCTAACGGAGTTCTTCGATGAGAAATCCGCTGCAAAGACCCCCAAAGTATACAAG
GATTACAGAGACTTTATCATCAACAGATACCGGGAAAATCTGCACAAGAGGATTAGTTTTACTGAGGTCAGGAAAATGCTGGCGGGGGACGTTAATTCGATAAGAAGGGTTTTTGATTTTCTGGACAATTGGGGTTTGATTAATTACCAGGTCACTTCTTCCAAACAACACACAAAAGCAGAGGAAAATGCTGGTGGTGG
GGGGGTGAAAGGGGCAGCGGCTAGGGTTTTGGGCCAGAAGGGTTTAGCGGCATCTGAGGGTGACCGTCCGCCTGGCGGGACTGCAATAGACAGCACGGTAATTGACGCAAAGGACAAGAAAGGGGCAGAATGTCAGAGTGGGCTTTTATGCAATAATTGCGGGGCCGACTGCTCTATTGCTCGCTTTGATTGCCTCAAGG
AAGTGATCAACCCCATGTCAAAAGATGAAGGCCTGTCCAAAGAGCCAGGAAATTCATCTGGTACTACTGATTGCAGTGTAGAAGGTGTAAAGACAATTAAGCAAGATCCAGAGAAAGAACTTCCTATAATGGCAATGGAAGAGGAGCCAAAAGATGAAAAAGGAGATGAAATGAACAAGGAAGAAGTTGAGCAAAACGAC
AATAAAGACAAGATGCTCAGAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAACAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGAACTATGAGAAATGTTCCTATAGGTGCCGGACGACGCAAGAACAAGCA
TTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGCTTGGATTGTCTGCTTCTGATTTCAAGCGAGTTGAACTGAGAGAAGTGAGTCAACACAAGAGTGTGGATTGGACAGATGAAGAAACTTTGCTACTTCTAGAAGCTATTTTTCTTCATAATGATGACTGGAAATGTGTTGCACAACATGTTG
GTACCAAAAGTGAGGTGGATTGTGTTTCCAGATTTGTACAGCTTCCTTTGGGAGAGCAATATGTTGGCAACATTAGCAATGAAGGCAGTGATAGAAGATCAGGTAATGTTATAGGTGAAAATACAGTAATCAAACAAGTTTCCAGTCCAAAGGACAGTAGTACCCAAGAACAGCACGACCATGTTAGCAATGACGATAAG
CATACTACGGATGATGTATCAGGCCCTCCGCTTAAACGGAGGCATCTTACACCACTTGCTGATGCCAGCAATCCCATAATGGGTCAGGTAGCCTTCCTGTCTGCCATGGTTGGTTCCCATGTTGCAGAAGCTGCAGCACATGCAGCTATTGCAGCTTTGAGTGAGGAGGATCCTGCTTCAAGCCAGGTGACAAGTACCCG
AGAGGCTGGGTGTCAAAATCAGAAAAATGGCTCTGGAGCGAGTGGTCTAGTGGGGTTTGCAAAAGATTTTGCGATGGAGGATAGCAAGAAGGAAACTCATGGAGGAACTGATCAAACTACCGAAGATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTT
TGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAAGAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGAAGCTACAGGAAAGAATTCAGCGTTTTGAGGAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATG
CGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAAGGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGCTTGTATATGGATGATCCTTGAATAGTTCATATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATC
TCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTATTTTAGAGCTTGATATTACTGCATGTGCAAAGATAATGTTTAATG
>TRINITY_DN105114_c0_g1_i3 from sample A2 / Example unspliced isoform:GCCGAATGGATCTGTACGAGATACTGTCATTTCAATCGATTTAATACTGAATTTCAGTGAACATAAATTTCAACCTGGCAAATCCAAGAAAGGAACAAACGGTTAGCCCCTCTGCCTCTCTGACTCTCTATATGTATACATTGAGGAACACCGTGCCACGTTGTTACTATTCTCCGCCCCCACTTCTCCATGTCATGTGA
TCCAGGTCGTATGCTCATGGGGCTCTTTGGATAAAAGGACGTTCTTCCTCCATTAGCGGAAGCAAGCAGAGCGAGCGCAGGAGCCAGAGCAATGGGGAGCCCCTCCAACACCAATACAAGCGGTAATACCAACAAGGACCCCAATCCGGAAACCACTTCAAACCACGCAGGCAGCCCCCACGACTCCTCCAACGCTGGTA
TTGCCGATACCGCCAATCCTCCCACCGTTCTCCAACCAGACATCAAGGAGGGCAGCTCACCTCCACGCCACAGAGAAATCTACAAAATCCCCAGATACTCAAGTTGGTTTGCATGGGACAAAATTCATAGCACTGAACGGAGATTTCTAACGGAGTTCTTCGATGAGAAATCCGCTGCAAAGACCCCCAAAGTATACAAG
GATTACAGAGACTTTATCATCAACAGATACCGGGAAAATCTGCACAAGAGGATTAGTTTTACTGAGGTCAGGAAAATGCTGGCGGGGGACGTTAATTCGATAAGAAGGGTTTTTGATTTTCTGGACAATTGGGGTTTGATTAATTACCAGGTCACTTCTTCCAAACAACACACAAAAGCAGAGGAAAATGCTGGTGGTGG
GGGGGTGAAAGGGGCAGCGGCTAGGGTTTTGGGCCAGAAGGGTTTAGCGGCATCTGAGGGTGACCGTCCGCCTGGCGGGACTGCAATAGACAGCACGGTAATTGACGCAAAGGACAAGAAAGGGGCAGAATGTCAGAGTGGGCTTTTATGCAATAATTGCGGGGCCGACTGCTCTATTGCTCGCTTTGATTGCCTCAAGG
AAGTGATCAACCCCATGTCAAAAGATGAAGGCCTGTCCAAAGAGCCAGGAAATTCATCTGGTACTACTGATTGCAGTGTAGAAGGTGTAAAGACAATTAAGCAAGATCCAGAGAAAGAACTTCCTATAATGGCAATGGAAGAGGAGCCAAAAGATGAAAAAGGAGATGAAATGAACAAGGAAGAAGTTGAGCAAAACGAC
AATAAAGACAAGATGCTCAGAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAACAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGAACTATGAGAAATGTTCCTATAGGTGCCGGACGACGCAAGAACAAGCA
TTCAGgtacacattattggcatacaatgaagtctgatggccttacaccaggtagaactggtgcctctgatgctgcccatcattcagGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGCTTGGATTGTCTGCTTCTGATTTCAAGCGAGTTGAACTGAGAGAAGTGAGTCAACACAAGAGTGTGGATT
GGACAGATGAAGAAACTTTGCTACTTCTAGAAGCTATTTTTCTTCATAATGATGACTGGAAATGTGTTGCACAACATGTTGGTACCAAAAGTGAGGTGGATTGTGTTTCCAGATTTGTACAGCTTCCTTTGGGAGAGCAATATGTTGGCAACATTAGCAATGAAGGCAGTGATAGAAGATCAGGTAATGTTATAGGTGAA
AATACAGTAATCAAACAAGTTTCCAGTCCAAAGGACAGTAGTACCCAAGAACAGCACGACCATGTTAGCAATGACGATAAGCATACTACGGATGATGTATCAGGCCCTCCGCTTAAACGGAGGCATCTTACACCACTTGCTGATGCCAGCAATCCCATAATGGGTCAGGTAGCCTTCCTGTCTGCCATGGTTGGTTCCCA
TGTTGCAGAAGCTGCAGCACATGCAGCTATTGCAGCTTTGAGTGAGGAGGATCCTGCTTCAAGCCAGGTGACAAGTACCCGAGAGGCTGGGTGTCAAAATCAGAAAAATGGCTCTGGAGCGAGTGGTCTAGTGGGGTTTGCAAAAGATTTTGCGATGGAGGATAGCAAGAAGGAAACTCATGGAGGTTGTGCTTACACAT
TTTGCTTCGTGGACTTGCATTTTTTGTAAATTATAACCTCTTTTTGTTCTAATTTGCTACTAAACAAGTCAAATATTGTCTTTCAATATCTATACATGATCAGCTTGAACTATAAGCAACTATATTGTATTTTGAACTTCCAAGAATCATCTGCAAAGTTTAGTGGATTGGTATAGCAGCTTCCATCAAGCTGTTTTGAA
GCATCTTCACTTCATAACATTTATTAGAGGCTTCTGGAATGTCACATATTTACATTGCAGGAACTGATCAAACTACCGAAGATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTTTGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAA
GAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGAAGCTACAGGAAAGAATTCAGCGTTTTGAGGAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATGCGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAA
GGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGCTTGTATATGGATGATCCTTGAATAGTTCATATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATCTCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTAT
TTTAGAGCTTGATATTACTGCATGTGCAAAGATAATGTTTAATG
Intron 3 GTAAGTATAA ... GTCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.47 | 50 | 0 | 18 |
| A2 | 22.22 | 63 | 0 | 18 |
| A3 | 23.91 | 70 | 0 | 22 |
| A4 | 26.92 | 38 | 3 | 14 |
| A5 | 22.58 | 24 | 1 | 7 |
| A6 | 22.22 | 28 | 0 | 8 |
| A7 | 20.71 | 111 | 0 | 29 |
| A8 | 25.49 | 38 | 0 | 13 |
| A9 | 16.81 | 94 | 0 | 19 |
| A10 | 23.36 | 82 | 0 | 25 |
>TRINITY_DN101129_c0_g3_i2 from sample A5 / Example spliced isoformCCCCACTTCTCCATGTCATGTGATCCAGGTCGTATGCTCATGGGGCTCTTTGGATAAAAGGACGTTCTTCCTCCATTAGCGGAAGCAAGCAGAGCGAGCGCAGGAGCCAGAGCAATGGGGAGCCCCTCCAACACCAATACAAGCGGTAATACCAACAAGGACCCCAATCCGGAAACCACTTCAAACCACGCAGGCAGCCC
CCACGACTCCTCCAACGCTGGTATTGCCGATACCGCCAATCCTCCCACCGTTCTCCAACCAGACATCAAGGAGGGCAGCTCACCTCCACGCCACAGAGAAATCTACAAAATCCCCAGATACTCAAGTTGGTTTGCATGGGACAAAATTCATAGCACTGAACGGAGATTTCTAACGGAGTTCTTCGATGAGAAATCCGCTG
CAAAGACCCCCAAAGTATACAAGGATTACAGAGACTTTATCATCAACAGATACCGGGAAAATCTGCACAAGAGGATTAGTTTTACTGAGGTCAGGAAAATGCTGGCGGGGGACGTTAATTCGATAAGAAGGGTTTTTGATTTTCTGGACAATTGGGGTTTGATTAATTACCAGGTCACTTCTTCCAAACAACACACAAAA
GCAGAGGAAAATGCTGGTGGTGGGGGGGTGAAAGGGGCAGCGGCTAGGGTTTTGGGCCAGAAGGGTTTAGCGGCATCTGAGGGTGACCGTCCGCCTGGCGGGACTGCAATAGACAGCACGGTAATTGACGCAAAGGACAAGAAAGGGGCAGAATGTCAGAGTGGGCTTTTATGCAATAATTGCGGGGCCGACTGCTCTAT
TGCTCGCTTTGATTGCCTCAAGGAAGTGATCAACCCCATGTCAAAAGATGAAGGCCTGTCCAAAGAGCCAGGAAATTCATCTGGTACTACTGATTGCAGTGTAGAAGGTGTAAAGACAATTAAGCAAGATCCAGAGAAAGAACTTCCTATAATGGCAATGGAAGAGGAGCCAAAAGATGAAAAAGGAGATGAAATGAACA
AGGAAGAAGTTGAGCAAAACGACAATAAAGACAAGATGCTCAGAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAACAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGAACTATGAGAAATGTTCCTATAGGT
GCCGGACGACGCAAGAACAAGCATTCAGGTACACATTATTGGCATACAATGAAGTCTGATGGCCTTACACCAGGTAGAACTGGTGCCTCTGATGCTGCCCATCATTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGCTTGGATTGTCTGCTTCTGATTTCAAGCGAGTTGAACTGAGAGAAGT
GAGTCAACACAAGAGTGTGGATTGGACAGATGAAGAAACTTTGCTACTTCTAGAAGCTATTTTTCTTCATAATGATGACTGGAAATGTGTTGCACAACATGTTGGTACCAAAAGTGAGGTGGATTGTGTTTCCAGATTTGTACAGCTTCCTTTGGGAGAGCAATATGTTGGCAACATTAGCAATGAAGGCAGTGATAGAA
GATCAGGTAATGTTATAGGTGAAAATACAGTAATCAAACAAGTTTCCAGTCCAAAGGACAGTAGTACCCAAGAACAGCACGACCATGTTAGCAATGACGATAAGCATACTACGGATGATGTATCAGGCCCTCCGCTTAAACGGAGGCATCTTACACCACTTGCTGATGCCAGCAATCCCATAATGGGTCAGGTAGCCTTC
CTGTCTGCCATGGTTGGTTCCCATGTTGCAGAAGCTGCAGCACATGCAGCTATTGCAGCTTTGAGTGAGGAGGATCCTGCTTCAAGCCAGGTGACAAGTACCCGAGAGGCTGGGTGTCAAAATCAGAAAAATGGCTCTGGAGCGAGTGGTCTAGTGGGGTTTGCAAAAGATTTTGCGATGGAGGATAGCAAGAAGGAAAC
TCATGGAGGAACTGATCAAACTACCGAAGATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTTTGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAAGAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGA
AGCTACAGGAAAGAATTCAGCGTTTTGAGGAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATGCGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAAGGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGC
TTGTATATGGATGATCCTTGAATAGTTCATATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATCTCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTATTTTAGAGCTTGATATTACTGCATGTGCG
>TRINITY_DN101129_c0_g3_i1 from sample A5 / Example unspliced isoform:CCCAGATACTCAAgtaagtataagaaaagaagaagacatttcatgtttattattttgatccctgtttaataccccgttttgcggttgtcttttcagGTTGGTTTGCATGGGACAAAATTCATAGCACTGAACGGAGATTTCTAACGGAGTTCTTCGATGAGAAATCCGCTGCAAAGACCCCCAAAGTATACAAGGATTAC
AGAGACTTTATCATCAACAGATACCGGGAAAATCTGCACAAGAGGATTAGTTTTACTGAGGTCAGGAAAATGCTGGCGGGGGACGTTAATTCGATAAGAAGGGTTTTTGATTTTCTGGACAATTGGGGTTTGATTAATTACCAGGTCACTTCTTCCAAACAACACACAAAAGCAGAGGAAAATGCTGGTGGTGGGGGGGT
GAAAGGGGCAGCGGCTAGGGTTTTGGGCCAGAAGGGTTTAGCGGCATCTGAGGGTGACCGTCCGCCTGGCGGGACTGCAATAGACAGCACGGTAATTGACGCAAAGGACAAGAAAGGGGCAGAATGTCAGAGTGGGCTTTTATGCAATAATTGCGGGGCCGACTGCTCTATTGCTCGCTTTGATTGCCTCAAGGAAGTGA
TCAACCCCATGTCAAAAGATGAAGGCCTGTCCAAAGAGCCAGGAAATTCATCTGGTACTACTGATTGCAGTGTAGAAGGTGTAAAGACAATTAAGCAAGATCCAGAGAAAGAACTTCCTATAATGGCAATGGAAGAGGAGCCAAAAGATGAAAAAGGAGATGAAATGAACAAGGAAGAAGTTGAGCAAAACGACAATAAA
GACAAGATGCTCAGAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAACAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGAACTATGAGAAATGTTCCTATAGGTGCCGGACGACGCAAGAACAAGCATTCAGG
TACACATTATTGGCATACAATGAAGTCTGATGGCCTTACACCAGGTAGAACTGGTGCCTCTGATGCTGCCCATCATTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGCTTGGATTGTCTGCTTCTGATTTCAAGCGAGTTGAACTGAGAGAAGTGAGTCAACACAAGAGTGTGGATTGGACAG
ATGAAGAAACTTTGCTACTTCTAGAAGCTATTTTTCTTCATAATGATGACTGGAAATGTGTTGCACAACATGTTGGTACCAAAAGTGAGGTGGATTGTGTTTCCAGATTTGTACAGCTTCCTTTGGGAGAGCAATATGTTGGCAACATTAGCAATGAAGGCAGTGATAGAAGATCAGGTAATGTTATAGGTGAAAATACA
GTAATCAAACAAGTTTCCAGTCCAAAGGACAGTAGTACCCAAGAACAGCACGACCATGTTAGCAATGACGATAAGCATACTACGGATGATGTATCAGGCCCTCCGCTTAAACGGAGGCATCTTACACCACTTGCTGATGCCAGCAATCCCATAATGGGTCAGGTAGCCTTCCTGTCTGCCATGGTTGGTTCCCATGTTGC
AGAAGCTGCAGCACATGCAGCTATTGCAGCTTTGAGTGAGGAGGATCCTGCTTCAAGCCAGGTGACAAGTACCCGAGAGGCTGGGTGTCAAAATCAGAAAAATGGCTCTGGAGCGAGTGGTCTAGTGGGGTTTGCAAAAGATTTTGCGATGGAGGATAGCAAGAAGGAAACTCATGGAGGAACTGATCAAACTACCGAAG
ATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTTTGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAAGAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGAAGCTACAGGAAAGAATTCAGCGTTTTGAG
GAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATGCGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAAGGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGCTTGTATATGGATGATCCTTGAATAGTTCA
TATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATCTCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTATTTTAGAGCTTGATATTACTGCATGTGCG
Intron 4 GTTGTGCTTA ... ACTACCGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.72 | 34 | 26 | 44 |
| A2 | 41.94 | 45 | 18 | 47 |
| A3 | 54.43 | 18 | 22 | 21 |
| A4 | 51.16 | 21 | 15 | 29 |
| A5 | 51.52 | 8 | 8 | 9 |
| A6 | 46.08 | 86 | 39 | 108 |
| A7 | 44.34 | 118 | 57 | 131 |
| A8 | 44.92 | 149 | 61 | 182 |
| A9 | 45.95 | 100 | 38 | 132 |
| A10 | 44.66 | 70 | 27 | 86 |
>TRINITY_DN105114_c0_g1_i4 from sample A2 / Example spliced isoformTAGCAAGAAGGAAACTCATGGAGATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTTTGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAAGAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGAAGCTAC
AGGAAAGAATTCAGCGTTTTGAGGAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATGCGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAAGGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGCTTGTAT
ATGGATGATCCTTGAATAGTTCATATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATCTCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTATTTTAGAGCTTGATATTACTGCATGTGCAAAGATAATGTTTAATG
>TRINITY_DN105114_c0_g1_i3 from sample A2 / Example unspliced isoform:GCCGAATGGATCTGTACGAGATACTGTCATTTCAATCGATTTAATACTGAATTTCAGTGAACATAAATTTCAACCTGGCAAATCCAAGAAAGGAACAAACGGTTAGCCCCTCTGCCTCTCTGACTCTCTATATGTATACATTGAGGAACACCGTGCCACGTTGTTACTATTCTCCGCCCCCACTTCTCCATGTCATGTGA
TCCAGGTCGTATGCTCATGGGGCTCTTTGGATAAAAGGACGTTCTTCCTCCATTAGCGGAAGCAAGCAGAGCGAGCGCAGGAGCCAGAGCAATGGGGAGCCCCTCCAACACCAATACAAGCGGTAATACCAACAAGGACCCCAATCCGGAAACCACTTCAAACCACGCAGGCAGCCCCCACGACTCCTCCAACGCTGGTA
TTGCCGATACCGCCAATCCTCCCACCGTTCTCCAACCAGACATCAAGGAGGGCAGCTCACCTCCACGCCACAGAGAAATCTACAAAATCCCCAGATACTCAAGTTGGTTTGCATGGGACAAAATTCATAGCACTGAACGGAGATTTCTAACGGAGTTCTTCGATGAGAAATCCGCTGCAAAGACCCCCAAAGTATACAAG
GATTACAGAGACTTTATCATCAACAGATACCGGGAAAATCTGCACAAGAGGATTAGTTTTACTGAGGTCAGGAAAATGCTGGCGGGGGACGTTAATTCGATAAGAAGGGTTTTTGATTTTCTGGACAATTGGGGTTTGATTAATTACCAGGTCACTTCTTCCAAACAACACACAAAAGCAGAGGAAAATGCTGGTGGTGG
GGGGGTGAAAGGGGCAGCGGCTAGGGTTTTGGGCCAGAAGGGTTTAGCGGCATCTGAGGGTGACCGTCCGCCTGGCGGGACTGCAATAGACAGCACGGTAATTGACGCAAAGGACAAGAAAGGGGCAGAATGTCAGAGTGGGCTTTTATGCAATAATTGCGGGGCCGACTGCTCTATTGCTCGCTTTGATTGCCTCAAGG
AAGTGATCAACCCCATGTCAAAAGATGAAGGCCTGTCCAAAGAGCCAGGAAATTCATCTGGTACTACTGATTGCAGTGTAGAAGGTGTAAAGACAATTAAGCAAGATCCAGAGAAAGAACTTCCTATAATGGCAATGGAAGAGGAGCCAAAAGATGAAAAAGGAGATGAAATGAACAAGGAAGAAGTTGAGCAAAACGAC
AATAAAGACAAGATGCTCAGAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAACAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGAACTATGAGAAATGTTCCTATAGGTGCCGGACGACGCAAGAACAAGCA
TTCAGGTACACATTATTGGCATACAATGAAGTCTGATGGCCTTACACCAGGTAGAACTGGTGCCTCTGATGCTGCCCATCATTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGCTTGGATTGTCTGCTTCTGATTTCAAGCGAGTTGAACTGAGAGAAGTGAGTCAACACAAGAGTGTGGATT
GGACAGATGAAGAAACTTTGCTACTTCTAGAAGCTATTTTTCTTCATAATGATGACTGGAAATGTGTTGCACAACATGTTGGTACCAAAAGTGAGGTGGATTGTGTTTCCAGATTTGTACAGCTTCCTTTGGGAGAGCAATATGTTGGCAACATTAGCAATGAAGGCAGTGATAGAAGATCAGGTAATGTTATAGGTGAA
AATACAGTAATCAAACAAGTTTCCAGTCCAAAGGACAGTAGTACCCAAGAACAGCACGACCATGTTAGCAATGACGATAAGCATACTACGGATGATGTATCAGGCCCTCCGCTTAAACGGAGGCATCTTACACCACTTGCTGATGCCAGCAATCCCATAATGGGTCAGGTAGCCTTCCTGTCTGCCATGGTTGGTTCCCA
TGTTGCAGAAGCTGCAGCACATGCAGCTATTGCAGCTTTGAGTGAGGAGGATCCTGCTTCAAGCCAGGTGACAAGTACCCGAGAGGCTGGGTGTCAAAATCAGAAAAATGGCTCTGGAGCGAGTGGTCTAGTGGGGTTTGCAAAAGATTTTGCGATGGAGGATAGCAAGAAGGAAACTCATGGAGgttgtgcttacacat
tttgcttcgtggacttgcattttttgtaaattataacctctttttgttctaatttgctactaaacaagtcaaatattgtctttcaatatctatacatgatcagcttgaactataagcaactatattgtattttgaacttccaagaatcatctgcaaagtttagtggattggtatagcagcttccatcaagctgttttgaa
gcatcttcacttcataacatttattagaggcttctggaatgtcacatatttacattgcaggaactgatcaaactaccgaagATGGTGAGTCTCTTGCTGGTGAAAAAGAGATGACGACTCCAACAGTGGAAATGAGAGCTGCTACTGCAACAGCTTTGGGGTCAGCAGCAGTGCGTGCAAAGCTTCTAGCAGATGAAGAA
GAACAAGATGTTGAAAATTTATTTTCCACTGTTGTTGATACCCAGATGAAGAAGCTACAGGAAAGAATTCAGCGTTTTGAGGAATTTGATATTGTCACGGAGAAAGAACGATCACAACTAGAACATATCAAGGATCTGCTGTTTGCAGATAGAATGCGTTTTATTCAAAATACTATTAAATCTAGATTTTCAGGGAGTAA
GGAAAAGGAATTAGAAGCAGCATAGTGGGTTACTCTTGAGTGTTTCATTTGCTTGTATATGGATGATCCTTGAATAGTTCATATCGATGACATGGAAATTGTGGATGGAACAGTAAATGCCATCCTTAGATCAAATGCTCGACTATGTTATTAATCTCATGGTTGTTGAGTGCTTCATCACTGATGGTTGTTACATGTAT
TTTAGAGCTTGATATTACTGCATGTGCAAAGATAATGTTTAATG