NA ----> NA
Intron 1 GTCTGCCGTA ... CATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 92.63 | 8 | 110 | 91 |
| A2 | 91.53 | 5 | 63 | 45 |
| A3 | 83.67 | 8 | 39 | 43 |
| A4 | 85.53 | 11 | 53 | 77 |
| A5 | 78.49 | 10 | 38 | 35 |
| A6 | 83.33 | 5 | 22 | 28 |
| A7 | 92.13 | 7 | 80 | 84 |
| A8 | 79.1 | 7 | 29 | 24 |
| A9 | 83.75 | 13 | 57 | 77 |
| A10 | 87.34 | 10 | 79 | 59 |
>TRINITY_DN43559_c0_g1_i4 from sample A9 / Example spliced isoformTACTTAGAGCGGAAAGAAAAAAGAAATGTGAACCGGCTTTGCAAAAAGGCAGTGGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTT
GGAGATTCTTGGAGGTATAATTTTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAA
GGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATA
AAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCT
CTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTA
CCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAGCTGCAGCAGCCACAGCAGCCACAGCTGCTGGACAATATGTTCCTG
AAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGGAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCA
GAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAACTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAACACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCT
CTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAGTCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCA
GAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCTACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGCATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCAT
GTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTACCGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAA
AAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCGGGGATGCAGGCAACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAA
ATTCCTATCCCACTTTCAATATATAATCCTTTTCTTGAAAGTTCAATGATTAAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCCCATAGGTATGGGGGATTGTTCATTTTGTATATAATCTTGTGTGCTGAGCATATTATTGGGTGCCCAC
TCTGAAATCTGCTAAAGCTGGAGATTGCAGACATACAAATCAAGATATCAAATCATTTTTTCAGTAAAAATGACTGACTGGATGTGAGTTCGACACTACTTTGAATTAGAGTAGTTTGGTAACTGACCCACTGGGTTTACTGTATTTGATTATAACAAAAGGTTATTGACATGAATTTCTAT
>TRINITY_DN43559_c0_g1_i1 from sample A9 / Example unspliced isoform:ATTGCCTTATGCATTGAAAATGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTACAAGAATTTTGCAGAA
TTCCAGAAAAGGAGATCACAGCGGCAGTTATTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGATACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGgtctgccgtaaaaggactgagtcgtgtatttcggcctcttcaccgcga
agaagaggatataagttcctcctgtttttcatattgcagAAATGTGAACCGGCTTTGCAAAAAGGCAGTGGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATT
GCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTTTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAG
GAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATAC
AGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATT
ATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCC
TTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTGTATCCTTTTTAACATTTTTTTAGATTGACAATGAACCTTTTGTATTCCGGTTTTAGTTGCACCTATACGCGATCGATCTCTTATCTTTCTGTTCATGGCACGTTTTATTGATTGGACAGCA
GAGAAAACGTTTTTTTGACAAGTATTATCACCAGGCTGTATCGGAATGTTACTTTTTGTTTGTGAAGAGAATCTGAACATATGGGTGACCTACACAATAACTCAAATACGTAGCTGACAAGGATTTTGAACAACTTTAATCTTTTCTCATCAGATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCT
GTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCAATCTCTAGTCTTTCTTGTATCCTTTGAAGAGCTGTATAGATTAACAGTGAACCTTTTGCATTCCCGTTTTTGTTGCACATTCTATCAAATTTGAACAACCTATACACAATCGATCTCTTATTTTTCTGTTCATGGTACATTTTAAT
TACTTAGACAGCAGAAAAATACATTTAGTAACAAGGATTATCACCGAGCTGTATCAGAATGTTTATTGGATTATCACCGAGCTGTATCAGAATGTTTATTTTTGTTTGTGAAGAGAATATGGACATATTGGCGACCTACAGAACAACTTAATACAAATTTGACAAGGATTTTGAACAAATTTAATCTTTTCTCATCAGAT
TGCAATGCTGCTTTTTTTTGGTTGGTTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCA
Intron 2 GTATCCTTTT ... TAGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 22 | 10 | 12 |
| A2 | 31.58 | 13 | 5 | 7 |
| A3 | 37.13 | 17 | 12 | 8 |
| A4 | 14.86 | 14.3 | 1 | 4 |
| A5 | 22.22 | 7 | 3 | 1 |
| A6 | 8 | 23 | 3 | 1 |
| A7 | 10.09 | 35.7 | 6 | 2 |
| A8 | 6.38 | 22 | 1 | 2 |
| A9 | 9.68 | 42 | 8 | 1 |
| A10 | 14.71 | 29 | 5 | 5 |
>TRINITY_DN45302_c0_g1_i5 from sample A8 / Example spliced isoformCATTGCCTTATGCATTGAAAATGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTACAAGGTCTGTAAATT
TTTTAATTTAATTTGCAAAAGCCCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATA
AGAAGAGGCGCTGTGCATAGATACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGC
AAAAAGGCAGTTGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTA
ATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGT
TCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTGCAAATGATGAAGGATTAGATAATGAGA
ATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAG
AGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCA
TCCAAACTCTACTATTTCTTATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCAATCTCTAGTCTTTCTTATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTG
AATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGCAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTG
GAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGGTGAATTTAACACCCAAAGATCACCATTATCCACCATTGGTTGAA
>TRINITY_DN45302_c0_g1_i3 from sample A8 / Example unspliced isoform:CATTGCCTTATGCATTGAAAATGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTACAAGGTCTGTAAATT
TTTTAATTTAATTTGCAAAAGCCCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATA
AGAAGAGGCGCTGTGCATAGATACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGC
AAAAAGGCAGTTGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTA
ATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGT
TCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTGCAAATGATGAAGGATTAGATAATGAGA
ATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAG
AGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCA
TCCAAACTCTACTATTTCTTGTATCCTTTTTAACATTTTTTTAGATTGACAATGAACCTTTTGTATTCCGGTTTTAGTTGCACCTATACGCGATCGATCTCTTATCTTTCTGTTCATGGCACATTTTATTGATTGGACAGCAGAGAAAACGTTTTTTTGACAAGTATTATCACCAGGCTGTATCGGAATGTTACTTTTTG
TTTGTGAAGAGAATCTGAACATATGGGTGACCTACACAATAACTCAAATACGTAGCTGACAAGGATTTTGAACAACTTTAATCTTTTCTCATCAGATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCATTCT
CTAGTCTTTCTTgtatccttttaagagctgtatagattaacagtgaaccttttgcattcccgtttttgttgcacattctatcaaatttgaacaacctatacacaatcgatctcttatttttctgttcacggtacattttaattacttagacagcagaaaaatacatttagtaacaaggattatcaccgagctgtatcaga
atgtttattggattatcaccgagctgtatcagaatgtttatttttgtttgtgaagagaatatatggacatattggcgacctacagaacaacttaatacaaatttgacaaggattttgaacaaatttaatcttttctcatcagattgcaatgctgcttttttttggttggttattttcaacaccgttgctgtaacaagttg
gttatctttaacatagtttccagATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCA
Intron 3 GTATCCTTTT ... TTCTCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.24 | 16 | 27 | 8 |
| A2 | 49.46 | 15.3 | 10 | 20 |
| A3 | 55.06 | 16.3 | 18 | 22 |
| A4 | 78.95 | 2 | 6 | 9 |
| A5 | 77.78 | 2 | 6 | 8 |
| A6 | 30.77 | 9 | 8 | 0 |
| A7 | 36.87 | 24.8 | 18 | 11 |
| A8 | 48.84 | 11 | 13 | 8 |
| A9 | 47.13 | 16.7 | 15 | 14.7 |
| A10 | 40.91 | 13 | 11 | 7 |
>TRINITY_DN122411_c0_g1_i7 from sample A1 / Example spliced isoformCTTTGCAAAAAGGCAGTGGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCA
GAAGTAATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTAT
AGCAGTTCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATA
ATGAGAATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACA
CACGAGAGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCC
TATTCATCCAAACTCTACTATTTCTTATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCATTCTCTAGTCTTTCTTGTATCCTTTTAAGAGCTGTATAGATTAACAGTGAACCTTTTGCATTCCCGTTTTTGT
TGCACATTCTATCAAATTTGAACAACCTATACACAATCGATCTCTTATTTTTCTGTTCACGGTACATTTTAATTACTTAGACAGCAGAAAAATACATTTAGTAACAAGGATTATCACCGAGCTGTATCAGAATGTTTATTGGATTATCACCGAGCTGTATCAGAATGTATATTTTTGTTTGTGAAGAGAATATGGACATA
TTGGCGACCTACAGAACAACTTAATACAAATTTGACAAGGATTTTGAACAAATTTAATCTTTTCTCATCAGATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTTATCTTTAACATAGTTTCCAGATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATT
TCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGGAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAA
CATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAACTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAA
ATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAGTCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTC
GAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCTACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAG
TAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTACCGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTG
ATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCGGGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTT
TTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCTTTTCTCGAAAGTTCAATGATTAAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAA
TTGCTGGTGGCATTTTGTACATTTAAACACAATCC
>TRINITY_DN122411_c0_g1_i5 from sample A1 / Example unspliced isoform:GCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTGCAAGGTCTGTAAATTTTTTAATTTAATTTGCAAAAGC
CCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGAT
ACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGCAAAAAGGCAGTGGATCAAATCT
GCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCT
CCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAG
TTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTAT
GGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATG
ATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTgt
atcctttttaacatttttttagattgacaatgaaccttttgtattccggttttagttgcacctatacgcgatcgatctcttatctttctgttcatggcacgttttattgattggacagcagagaaaacgtttttttgacaagtattatcaccaggctgtatcggaatgttactttttgtttgtgaagagaatctgaacat
atgggtgacctacacaataactcaaatacgtagctgacaaggattttgaacaactttaatcttttctcatcagATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCATTCTCTAGTCTTTCTTGTATCCTTTT
AAGAGCTGTATAGATTAACAGTGAACCTTTTGCATTCCCGTTTTTGTTGCACATTCTATCAAATTTGAACAACCTATACACAATCGATCTCTTATTTTTCTGTTCACGGTACATTTTAATTACTTAGACAGCAGAAAAATACATTTAGTAACAAGGATTATCACCGAGCTGTATCAGAATGTTTATTGGATTATCACCGA
GCTGTATCAGAATGTATATTTTTGTTTGTGAAGAGAATATGGACATATTGGCGACCTACAGAACAACTTAATACAAATTTGACAAGGATTTTGAACAAATTTAATCTTTTCTCATCAGATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTTATCTTTAACATAGTTTCCAGA
TTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGGAAC
ATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAA
CTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAG
TCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCT
ACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTAC
CGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCG
GGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCTTTTCTCGAAAGTTCAATGATT
AAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCC
Intron 4 GTATCCTTTT ... TAGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.03 | 66 | 27 | 12 |
| A2 | 21.28 | 37 | 10 | 7 |
| A3 | 20 | 72 | 18 | 8 |
| A4 | 14.29 | 36 | 6 | 4 |
| A5 | 25 | 18 | 6 | 1 |
| A6 | 12.9 | 54 | 8 | 1 |
| A7 | 13.95 | 111 | 18 | 2 |
| A8 | 17.57 | 61 | 13 | 2 |
| A9 | 14.71 | 87 | 15 | 1 |
| A10 | 13.25 | 72 | 11 | 5 |
>TRINITY_DN45302_c0_g1_i4 from sample A8 / Example spliced isoformCATTGCCTTATGCATTGAAAATGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTACAAGGTCTGTAAATT
TTTTAATTTAATTTGCAAAAGCCCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATA
AGAAGAGGCGCTGTGCATAGATACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGC
AAAAAGGCAGTTGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTA
ATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGT
TCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTGCAAATGATGAAGGATTAGATAATGAGA
ATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAG
AGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCA
TCCAAACTCTACTATTTCTTATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAGCTGCAGCAGCCACAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTC
AACTGCAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTT
AATGATGAACTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCT
GAGAAGCAGTCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTG
GCATAGTCTACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGCATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTAT
CCAATTTACCGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTT
GGAAAAGCGGGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCTTTTCTTGAAAGT
TCAATGATTAAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCCCATAGGTATGGGGGATTGTTCATTTTGTATATAATCTTGTGTGCTGAGCATATTATTGGGTGCCCACTCTGAAATCTGCTAAAGCTGGAGATTGCAGACATACAAATCA
AGATATCAAATCATTTTTTCAGTAAAAATGACTGACTGGATGTGAGTTCGACACTACTTTGAATTAGAGTAGTTTGGTAACTGACCCACTGGGTTTACTGTATTTGATTATAACAAAAGGTTATTGACATG
>TRINITY_DN45302_c0_g1_i3 from sample A8 / Example unspliced isoform:CATTGCCTTATGCATTGAAAATGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTACAAGGTCTGTAAATT
TTTTAATTTAATTTGCAAAAGCCCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATA
AGAAGAGGCGCTGTGCATAGATACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGC
AAAAAGGCAGTTGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTA
ATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGT
TCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTGCAAATGATGAAGGATTAGATAATGAGA
ATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAG
AGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCA
TCCAAACTCTACTATTTCTTgtatcctttttaacatttttttagattgacaatgaaccttttgtattccggttttagttgcacctatacgcgatcgatctcttatctttctgttcatggcacattttattgattggacagcagagaaaacgtttttttgacaagtattatcaccaggctgtatcggaatgttactttttg
tttgtgaagagaatctgaacatatgggtgacctacacaataactcaaatacgtagctgacaaggattttgaacaactttaatcttttctcatcagattgcaatgctgcttttttctggttggctattttcaacactgttgctgtaacaagttggtaactcggatgaatatataactcggaccagtctattcatccattct
ctagtctttcttgtatccttttaagagctgtatagattaacagtgaaccttttgcattcccgtttttgttgcacattctatcaaatttgaacaacctatacacaatcgatctcttatttttctgttcacggtacattttaattacttagacagcagaaaaatacatttagtaacaaggattatcaccgagctgtatcaga
atgtttattggattatcaccgagctgtatcagaatgtttatttttgtttgtgaagagaatatatggacatattggcgacctacagaacaacttaatacaaatttgacaaggattttgaacaaatttaatcttttctcatcagattgcaatgctgcttttttttggttggttattttcaacaccgttgctgtaacaagttg
gttatctttaacatagtttccagATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCA
Intron 5 GTATCCTTTT ... TTCTCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.23 | 16.7 | 27 | 8 |
| A2 | 46.9 | 14.7 | 8 | 18 |
| A3 | 57.1 | 13.7 | 17.3 | 18.7 |
| A4 | 78.95 | 2 | 6 | 9 |
| A5 | 77.78 | 2 | 6 | 8 |
| A6 | 29.3 | 9.7 | 8 | 0 |
| A7 | 40.81 | 19 | 16.7 | 9 |
| A8 | 43.92 | 11.7 | 11 | 7.3 |
| A9 | 44.38 | 17.3 | 15 | 12.7 |
| A10 | 39.99 | 13 | 11 | 6.3 |
>TRINITY_DN122411_c0_g1_i7 from sample A1 / Example spliced isoformCTTTGCAAAAAGGCAGTGGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCA
GAAGTAATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTAT
AGCAGTTCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATA
ATGAGAATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACA
CACGAGAGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCC
TATTCATCCAAACTCTACTATTTCTTATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCATTCTCTAGTCTTTCTTGTATCCTTTTAAGAGCTGTATAGATTAACAGTGAACCTTTTGCATTCCCGTTTTTGT
TGCACATTCTATCAAATTTGAACAACCTATACACAATCGATCTCTTATTTTTCTGTTCACGGTACATTTTAATTACTTAGACAGCAGAAAAATACATTTAGTAACAAGGATTATCACCGAGCTGTATCAGAATGTTTATTGGATTATCACCGAGCTGTATCAGAATGTATATTTTTGTTTGTGAAGAGAATATGGACATA
TTGGCGACCTACAGAACAACTTAATACAAATTTGACAAGGATTTTGAACAAATTTAATCTTTTCTCATCAGATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTTATCTTTAACATAGTTTCCAGATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATT
TCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGGAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAA
CATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAACTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAA
ATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAGTCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTC
GAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCTACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAG
TAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTACCGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTG
ATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCGGGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTT
TTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCTTTTCTCGAAAGTTCAATGATTAAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAA
TTGCTGGTGGCATTTTGTACATTTAAACACAATCC
>TRINITY_DN122411_c0_g1_i2 from sample A1 / Example unspliced isoform:GCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTGCAAGGTCTGTAAATTTTTTAATTTAATTTGCAAAAGC
CCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGAT
ACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGCAAAAAGGCAGTGGATCAAATCT
GCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCT
CCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAG
TTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTAT
GGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATG
ATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTgt
atcctttttaacatttttttagattgacaatgaaccttttgtattccggttttagttgcaccttctatcaaaattaaacaacctatacgcgatcgatctcttatctttctgttcatggcacgttttattgattggacagcagagaaaacgtttttttgacaagtattatcaccaggctgtatcggaatgttactttttgt
ttgtgaagagaatctgaacatatgggtgacctacacaataactcaaatacgtagctgacaaggattttgaacaactttaatcttttctcatcagATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCATTCTC
TAGTCTTTCTTGTATCCTTTTAAGAGCTGTATAGATTAACAGTGAACCTTTTGCATTCCCGTTTTTGTTGCACATTCTATCAAATTTGAACAACCTATACACAATCGATCTCTTATTTTTCTGTTCACGGTACATTTTAATTACTTAGACAGCAGAAAAATACATTTAGTAACAAGGATTATCACCGAGCTGTATCAGAA
TGTTTATTGGATTATCACCGAGCTGTATCAGAATGTATATTTTTGTTTGTGAAGAGAATATGGACATATTGGCGACCTACAGAACAACTTAATACAAATTTGACAAGGATTTTGAACAAATTTAATCTTTTCTCATCAGATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTT
ATCTTTAACATAGTTTCCAGATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAG
ATGAGCTTCTTCAACTGGAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATT
CCTCCAATTCTTAATGATGAACTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAA
TGGGGGAATGCTGAGAAGCAGTCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTG
GCAGAGGTGCTGGCATAGTCTACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCC
ATGTTTCAGTATCCAATTTACCGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTG
TAGGTCAGCTTTGGAAAAGCGGGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCT
TTTCTCGAAAGTTCAATGATTAAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCC
Intron 6 GTCTGTAAAT ... ATTTTCGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.78 | 31.3 | 60 | 55 |
| A2 | 57.68 | 28 | 42 | 34 |
| A3 | 67.31 | 16.3 | 39 | 27 |
| A4 | 57.04 | 22.7 | 33 | 27 |
| A5 | 66.18 | 13 | 23 | 27 |
| A6 | 62.22 | 7.3 | 15 | 9 |
| A7 | 61.5 | 26.7 | 47 | 34 |
| A8 | 55.98 | 9.3 | 11 | 12 |
| A9 | 49.76 | 33.3 | 37 | 26 |
| A10 | 56.02 | 33 | 43 | 36 |
>TRINITY_DN109120_c0_g1_i3 from sample A4 / Example spliced isoformGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTACAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAG
CGGCAGTTATTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGATACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTC
CTGTTTTTCATATTGCAGAAATGTGAACCGGCTTTGCAAAAAGGCAGTGGATCAAATCTGCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGA
TTCTTGGAGGTATAATTTTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCTCCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAAC
AGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAGTTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAA
CACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTATGGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAA
TAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATGATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGCACCATG
CAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAGCTGCAGCAGCCACAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATT
TTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGCAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAA
TGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAACTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCT
GGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAGTCAAACTCAGAGAGGTGGACGAAGTGTGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCGCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAAC
TACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCTACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGCATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTT
GGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTACCGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATA
TTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCGGGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCC
TATCCCACTTTCAATATATAATCCTTTTCTTGAAAGTTCAATGATTAAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAACCCC
>TRINITY_DN109120_c0_g1_i6 from sample A4 / Example unspliced isoform:GCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTACAAGgtctgtaaattttttaatttaatttgcagaagc
ccgacgaaatgtgtacgaatttgttaaatttgaggtcatgcaagcgatttgcagagatttgagctaatttgcctgatgtaagacctgtttcgaacaattttcgaagAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCGGCAGTTATTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGATA
CGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGCTTTGCAAAAAGGCAGTGGATCAAATCTGC
ATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTTTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCTCC
GTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAGTT
GAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTATGG
CAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATGAT
TATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGCACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTGTAT
CCTTTTTAACATTTTTTTAGATTGACAATGAACCTTTTGTATTCCGGTTTTAGTTGCACCTATACGCGATCGATCTCTTATCTTTCTGTTCATGGCACGTTTTATTGATTGGACAGCAGAGAAAACGTTTTTTTGACAAGTATTATCACCAGGCTGTATCGGAATGTTACTTTTTGTTTGTGAAGAGAATCTGAACATAT
GGGTGACCTACACAATAACTCAAATACGTAGCTGACAAGGATTTTGAACAACTTTAATCTTTTCTCATCAGATTGCAATGCTGCTTTTTTCTGGTTGGCTATTTTCAACACTGTTGCTGTAACAAGTTGGTAACTCGGATGAATATATAACTCGGACCAGTCTATTCATCCAATCTCTAGTCTTTCTTGTATCCTTTGAA
GAGCTGTATAGATTAACAGTGAACCTTTTGCATTCCCGTTTTTGTTGCACATTCTATCAAATTTGAACAACCTATACACAATCGATCTCTTATTTTTCTGTTCATGGTACATTTTAATTACTTAGACAGCAGAAAAATACATTTAGTAACAAGGATTATCACCGAGCTGTATCAGAATGTTTATTGGATTATCACCGAGC
Intron 7 GTATCCTTTT ... TAGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 66 | 27 | 17 |
| A2 | 22.11 | 37 | 10 | 11 |
| A3 | 19.35 | 75 | 18 | 18 |
| A4 | 13.95 | 37 | 6 | 6 |
| A5 | 25 | 18 | 6 | 6 |
| A6 | 8.47 | 54 | 8 | 2 |
| A7 | 14.29 | 111 | 18 | 19 |
| A8 | 15.28 | 61 | 13 | 9 |
| A9 | 14.29 | 87 | 15 | 14 |
| A10 | 14.29 | 72 | 11 | 13 |
>TRINITY_DN122411_c0_g1_i4 from sample A1 / Example spliced isoformGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTGCAAGGTCTGTAAATTTTTTAATTTAATTTGCAAAAGC
CCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGAT
ACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGCAAAAAGGCAGTGGATCAAATCT
GCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCT
CCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAG
TTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTAT
GGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATG
ATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTAT
TCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGGAACA
TGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAAC
TGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAGT
CAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCTA
CAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTACC
GAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCGG
GGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCTTTTCTCGAAAGTTCAATGATTA
AAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCC
>TRINITY_DN122411_c0_g1_i5 from sample A1 / Example unspliced isoform:GCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTGCAAGGTCTGTAAATTTTTTAATTTAATTTGCAAAAGC
CCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGAT
ACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGCAAAAAGGCAGTGGATCAAATCT
GCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCT
CCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAG
TTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTAT
GGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATG
ATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTgt
atcctttttaacatttttttagattgacaatgaaccttttgtattccggttttagttgcacctatacgcgatcgatctcttatctttctgttcatggcacgttttattgattggacagcagagaaaacgtttttttgacaagtattatcaccaggctgtatcggaatgttactttttgtttgtgaagagaatctgaacat
atgggtgacctacacaataactcaaatacgtagctgacaaggattttgaacaactttaatcttttctcatcagattgcaatgctgcttttttctggttggctattttcaacactgttgctgtaacaagttggtaactcggatgaatatataactcggaccagtctattcatccattctctagtctttcttgtatcctttt
aagagctgtatagattaacagtgaaccttttgcattcccgtttttgttgcacattctatcaaatttgaacaacctatacacaatcgatctcttatttttctgttcacggtacattttaattacttagacagcagaaaaatacatttagtaacaaggattatcaccgagctgtatcagaatgtttattggattatcaccga
gctgtatcagaatgtatatttttgtttgtgaagagaatatggacatattggcgacctacagaacaacttaatacaaatttgacaaggattttgaacaaatttaatcttttctcatcagattgcaatgctgcttttttctggttggctattttcaacactgttgctgtaacaagttggttatctttaacatagtttccagA
TTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGGAAC
ATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAA
CTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAG
TCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCT
ACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTAC
CGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCG
GGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCTTTTCTCGAAAGTTCAATGATT
AAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCC
Intron 8 GTATCCTTTT ... TAGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 66 | 27 | 17 |
| A2 | 22.11 | 37 | 10 | 11 |
| A3 | 19.35 | 75 | 18 | 18 |
| A4 | 13.95 | 37 | 6 | 6 |
| A5 | 25 | 18 | 6 | 6 |
| A6 | 8.47 | 54 | 8 | 2 |
| A7 | 14.29 | 111 | 18 | 19 |
| A8 | 15.28 | 61 | 13 | 9 |
| A9 | 14.29 | 87 | 15 | 14 |
| A10 | 14.29 | 72 | 11 | 13 |
>TRINITY_DN122411_c0_g1_i4 from sample A1 / Example spliced isoformGCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTGCAAGGTCTGTAAATTTTTTAATTTAATTTGCAAAAGC
CCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGAT
ACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGCAAAAAGGCAGTGGATCAAATCT
GCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCT
CCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAG
TTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTAT
GGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATG
ATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTAT
TCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAGATGAGCTTCTTCAACTGGAACA
TGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATTCCTCCAATTCTTAATGATGAAC
TGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAATGGGGGAATGCTGAGAAGCAGT
CAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTGGCAGAGGTGCTGGCATAGTCTA
CAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCCATGTTTCAGTATCCAATTTACC
GAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTGTAGGTCAGCTTTGGAAAAGCGG
GGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCTTTTCTCGAAAGTTCAATGATTA
AAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCC
>TRINITY_DN122411_c0_g1_i2 from sample A1 / Example unspliced isoform:GCCAAAGAAGATGTTACGCGTCACCCGCAAAACCCTCACTCCCCGCGCCCATTTCAATTCCTATTCGTCTGCTTCGTTTAAGAATTTCGCTACGCGCCTATCTCTGCAAATTTGTCCAACATTTTCGCTCTAATTCTGAAAGCGAAGAAACCTCCATTCGCTGCAAGGTCTGTAAATTTTTTAATTTAATTTGCAAAAGC
CCGACGAAATGTGTACGAATTTGTTAAATTTGAGGTCAGTGCAAGCGATTAGCAGAGATTTGAGCTAATTTGCGTGATGTAAGACCTGTTTCGAACAATTTTCGAAGAATTTTGCAGAATTCCAGAAAAGGAGATCACAGCAGCAGTTTTTTCAAGAATCTGCAAATTTCAACAGATAAGAAGAGGCGCTGTGCATAGAT
ACGGCGAATTTTGGAGGAAAGAATACGAAACGTATCTAAATTTGACAATACTTAGAGCGGAAAGAAAAAAGGTCTGCCGTAAAAGGACTGAGTCGTGTATTTCGGCCTCTTCACCGCGAAGAAGAGGATATAAGTTCCTCCTGTTTTTCATATTGCAGAAATGTGAACCGGGCTTTGCAAAAAGGCAGTGGATCAAATCT
GCATACGATGAGACATGTAGAAGTTCGAATTCGAATGAAGTTGAAAGTTTAAGATCGCCAGAGTGAACTAGGATAACTGCAATTAAATACTTCTGCCTTCGTCTGCGAACTAGGTTAATTGCATCGTTTTGACTTTGGAGATTCTTGGAGGTATAATTGTATGGCGAGTTCAGAAGTAATCCCTGGAACGCCTGATGGCT
CCGTGAATTCCTCATCCCTTCACAAAGAAGGTCCCGTTCTCTGCTTGTTAAACAAGCGTATAAGAGCCCTCCGTAAAAAGTATAATAGGATTCTGCAAATTGAAGAGAATAAATCACAAGGAAAGGTTATCAACAAGGAACAGGAGGAAGTTCTCTGCTCTAAAACTGGTATAGCAGTTCTCATTGATGAGTTAGAGAAG
TTGAAACAACCTTTAAGTAATGCACTCAAGGAAGAGATTGCAGAAAGGGAGAGGGAATTCATGGATTCTGTTCCCAAGAGACCAGATGAAGACGGCGGCTCTGCAAATGATAAAGAATACAGTTCTGCAAACGATAAAGAACACAGCTCTACAAATGATGAAGGATTAGATAATGAGAATTCTGACGGGAAAGGAATTAT
GGCAAATGGATGCTTCGAAGAGACTAGAAAGGACTGTGGGGAGAGCTCTGCCATGGACACAGAAGCTCCTGATCTAATTGCCGTTGCAGACATCTTGAAGATTCTGTATTTTGCAAAATTATTTAATGTCTATTCTCTTAATAGACTTGCTTCAATTATGTGGACAAAAACACACGAGAGGATTTCTTGCCTTTCCTATG
ATTATGTCACGGAGGATGCTACAGATCATCTCAGAGAAGAAGACCTTGATGCATTATCGATGGTTGGATCATTTATGACGTCAAGGCCGCCTCATGCAACTATTTCACACAAGGATGCCCTTCAGATTTGTGTGTACCATGCAAGGCAGTGGTTGTGCAATTCGGACCAGCCTATTCATCCAAACTCTACTATTTCTTgt
atcctttttaacatttttttagattgacaatgaaccttttgtattccggttttagttgcaccttctatcaaaattaaacaacctatacgcgatcgatctcttatctttctgttcatggcacgttttattgattggacagcagagaaaacgtttttttgacaagtattatcaccaggctgtatcggaatgttactttttgt
ttgtgaagagaatctgaacatatgggtgacctacacaataactcaaatacgtagctgacaaggattttgaacaactttaatcttttctcatcagattgcaatgctgcttttttctggttggctattttcaacactgttgctgtaacaagttggtaactcggatgaatatataactcggaccagtctattcatccattctc
tagtctttcttgtatccttttaagagctgtatagattaacagtgaaccttttgcattcccgtttttgttgcacattctatcaaatttgaacaacctatacacaatcgatctcttatttttctgttcacggtacattttaattacttagacagcagaaaaatacatttagtaacaaggattatcaccgagctgtatcagaa
tgtttattggattatcaccgagctgtatcagaatgtatatttttgtttgtgaagagaatatggacatattggcgacctacagaacaacttaatacaaatttgacaaggattttgaacaaatttaatcttttctcatcagattgcaatgctgcttttttctggttggctattttcaacactgttgctgtaacaagttggtt
atctttaacatagtttccagATTCGAATTTGAGGGAGAGACTGAACAGGATTCTTTCATCAGATTATTTCATCACAACTCCTGAATTAAAGACAATCAGTCGTGAAACTGCAACTGCAGCTGCAGCAGCCACAGCTGCAGCAGCCACAGCTGCTGGACAATATGTTCCTGAAATTTTTATGCACCACTCTTCCGCAGAAG
ATGAGCTTCTTCAACTGGAACATGTATCAAATTACATTCAACAGCAAGATCAGAAGGACACACAGCAACATTTTTATCAAGTGGAAGAATGTTCTAGTCCAGTTGAAACTGATGAATTATCAAAGTCTGTTGTGGATGGAAACTCTTTTCCAGAGAGCAATACTCCATCAGAAAATGTGCAGACTGAGGCCAAACCAATT
CCTCCAATTCTTAATGATGAACTGGAACAAAATGAGTCTCAACATCAGCAGTTGCCTTCTATTTCAAAATCAATACAAGAAATGCAGCAGCATGATCAGCACGAGCCACAAAATATGCAGCTCTCTTGGCAGCAGAAACATGATCAGCAGCATCCACAGCATATGCAGCTCTCCTGGCAGCAGCAGCAATATGTGCGAAA
TGGGGGAATGCTGAGAAGCAGTCAAACTCAGAGAGGTGGACGAAGTATGGGCTATGGAGGAGGTGGTCGAGGTAGGAGTCATATGAATGGGAGAGGAAGTCTCAGGGGCAGAGGTGGTAGCTATTCTGATGGTCATGAACAGTTTCATGACCAGGGTAGCCCATCCCCCAGAAACTACTATAGCAGAAGAGGGAAGGCTG
GCAGAGGTGCTGGCATAGTCTACAATAACAATGCTGCTGGCCCAATCCAAACAACTGCTGATCCAGAGTAGATTCATGTGGATCTGCATGTACTTTTATGCTTTGATGCTTTTTGTGGAAAATATTTTGAAGTTGGACACGTTTCTTTCATCCTAAGCGAGGGGACTCATGTTTTGGTCTCTATTAAGAAACTTTTGGCC
ATGTTTCAGTATCCAATTTACCGAATGACACATTACAAGAAGTCCTTGGTACTCCATAAATCTTTTTGATGGAATGACTCCAAATTTGACAGTCCGGAGTCCAATCATCATGATTTGGTCAAACATTCTCCAGTGTAGCTCCTTGAACTAATTGTTTCCCATGGGAGCAAAAATATTTTTTTAGCATCTTTCATGATGTG
TAGGTCAGCTTTGGAAAAGCGGGGATGCAGGCGACCAAGTATACAAGTCAACTTAGTCAAGTGATTTTTTGATGGTGATTGGGATATTTGTAAAATCATTATGTGGTAGTTCTTGGTGTGACATATTTGAAGATAACTAGGTTTCTCTTGGTTGTAATATTCAGGAAGAAATTCCTATCCCACTTTCAATATATAATCCT
TTTCTCGAAAGTTCAATGATTAAAATACTCTTTTTAGATTGAATCTTGATATGCTCTTGAGGAATAAATTGCTGGTGGCATTTTGTACATTTAAACACAATCC