sp|Q0WPZ7|GLE1_ARATH ----> mRNA export factor GLE1
Intron 1 GTTCCAATTG ... GTGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.35 | 29 | 32 | 46 |
| A2 | 56.1 | 18 | 18 | 28 |
| A3 | 62.5 | 9 | 15 | 15 |
| A4 | 50.82 | 15 | 14 | 17 |
| A5 | 33.33 | 2 | 0 | 2 |
| A6 | 78.57 | 3 | 10 | 12 |
| A7 | 71.43 | 20 | 44 | 56 |
| A8 | 63.64 | 28 | 40 | 58 |
| A9 | 68.5 | 20 | 44 | 43 |
| A10 | 65.31 | 17 | 32 | 32 |
>TRINITY_DN47893_c0_g1_i1 from sample A10 / Example spliced isoformAAGTGCTTACTGTCACCTATTTCGCGGGCAGAACTTCAAGCTTCAAATTTCACTACGAAACCATTCCCAAAAGTAATTAGAGAGAACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACTGAATTGGCCAAGCATGAATACCAGGTTATTACAATGGACTACTGCATTTTTGCAAATGTAGCCTTGC
CAAATACCTAAGTTTTTAACAGCTTCAAAGTTGCGCCCATTACCGACGGTTACTTTCGGGTTTATGACGAACGCAGCATCCAAAGCCCCAAAGTATCATTCGAACCCTCTCTGTTGTGAAGCTCCGGTCTCAACCTTGAAATATTTGTCGGACTTGAAATTGCGAACCCTATTGGATTTCACCGAACTATTCGCATTCGA
ATCGAATTTTCGCATTTCTGAATTTTTTAGTCTGATTCGGACGAATTTGGTAACTATGTTTTAAAGGTTGGCCTCTGTAGCTAAGTCGCTGGCTACATTGGATGCACTGCAGAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGAAAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTT
AAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATTGCTGCCGGAAAATAAACCT
TGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGACTATTCTCAACCAGAAATTAACTCAAGAAGTGATTCTGA
AGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCTAGGACGGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAACAGAAAGGTCGGCTACAGCACTTCAGCTTGTTG
AGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTTGAAGAAGCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAA
CGCCAAGAGAAAGCCAGGGCAGAAGCTGAGGCTAAATTGAAGGCGGAGATGAAAGCTGCTGCTGAAGCACGGAAAGCAGCAGCAGAAGCAGAGAAAAAGGCTGCTGCAGAAGCAGAAAAAAAGGCTGCCAAAGAAGCAGAGAAAAAAGCAGCTTTAGAAGCAGAAAAAAGGGCAGCTTCAGAAGCAGAGAGGAAAGCCAA
AGGAGAGGAAAAAAGATCTCAGGAATCGCAGCAGAAGTCACCCAGGACATTGTCCACAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATTTAAGTAAGGAATTGAGAAATTGTGAAAGGCAGA
TTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGGCTGTTTCTCAATGTGAAACACAAACTCTCAGTTTGAATTCTATTGCGTTTGCCTTGGCACGTGTGATTGTG
CTTGTTACTTCACAGAGTTTCATAAGGCTTGCATATTTACCGTTCCAAAATACATTCCATATTCAAAGATTGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGAAAGTACAGATAATTATCTGGCTCGCATGAAAGCATATGTGACTCTATATGCAGCAATCATTCAG
ACAGACATACCAGGTGTGAACAACCTTCATGGTGTGAAGGATGGATGGGCTTGGATGGCTCGATTTCTAAATGTACTCCCTCCCAACAGGTTTACAGCAGCTGCTTTAGAGATATTTTTGAAGATAGCCGGTTTCCATCTCTTTCAAGCATATCCTAAGCCTTTCACAAAACTTTTAAATGCTATATCAAGAGAGTTTAT
AGATAAGCTGAAATCACAAAATGATCCAGATTCAAATCCAGTGATTAGCAACTTGGAGACATACTTGACATCTCAGCAATTCAGAAAAGAGCCTGAAGGACGTGCCTTGGCTATCACAGATGAGTCGAAAAACTTACGGGCCTGAGAAAGCTGATGCTTTTCATTTGAAAGAAAAGCACTACTAGAATCTGAGGCACTTT
TTACTTGCAAGGACAGTTATTTATTTCTCAATCGAGTGTTGAATGGAGTTTTTCTGTATTTATAGTTTGCCAATGTATTCAAAAGTTTGGCAGGCTTCAGTTATTGAAATTGAAGATTTCCTTGGTACACACGTACATTTGAGTAGAGATATAACAAAGGTTTCCTTTAGAGAGTACTGAAAAGGAGCACCTCAGTATTT
GGTGTCATTATCACTGCCACAATTTAACTAGAATTAGGCATGGGTTTTGTGACCTTTATCTCTCAATAATCCAAACCACACAATTCCTGATAAATCTTGTTATCAATATCATGTTTTATTCCAATTTCAAATCGTCAGAGTATTAATTTTCCTCATTTTTAGAATGATTTTGATTTTATAACACCA
>TRINITY_DN47893_c0_g1_i6 from sample A10 / Example unspliced isoform:AAGTGCTTACTGTCACCTATTTCGCGGGCAGAACTTCAAGCTTCAAATTTCACTACGAAACCATTCCCAAAAGTAATTAGAGAGAACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACTGAATTGGCCAAGCATGAATACCAGGTTATTACAATGGACTACTGCATTTTTGCAAATGTAGCCTTGC
CAAATACCTAAGTTTTTAACAGCTTCAAAGTTGCGCCCATTACCGACGGTTACTTTCGGGTTTATGACGAACGCAGCATCCAAAGCCCCAAAGTATCATTCGAACCCTCTCTGTTGTGAAGCTCCGGTCTCAACCTTGAAATATTTGTCGGACTTGAAATTGCGAACCCTATTGGATTTCACCGAACTATTCGCATTCGA
ATCGAATTTTCGCATTTCTGAATTTTTTAGTCTGATTCGGACGAATTTGGTAACTATGTTTTAAAGGTTGGCCTCTGTAGCTAAGTCGCTGGCTACATTGGATGCACTGCAGAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGAAAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTT
AAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATTGCTGCCGGAAAATAAACCT
TGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGACTATTCTCAACCAGAAATTAACTCAAGAAGTGATTCTGA
AGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCTAGGACGGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAACAGAAAGGTCGGCTACAGCACTTCAGCTTGTTG
AGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTTGAAGAAGCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAA
CGCCAAGAGAAAGCCAGGGCAGAAGCTGAGGCTAAATTGAAGGCGGAGATGAAAGCTGCTGCTGAAGCACGGAAAGCAGCAGCAGAAGCAGAGAAAAAGGCTGCTGCAGAAGCAGAAAAAAAGGCTGCCAAAGAAGCAGAGAAAAAAGCAGCTTTAGAAGCAGAAAAAAGGGCAGCTTCAGAAGCAGAGAGGAAAGCCAA
AGGAGAGGAAAAAAGATCTCAGGAATCGCAGCAGAAGTCACCCAGGACATTGTCCACAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATTTAAGTAAGGAATTGAGAAATTGTGAAAGGCAGA
TTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGGCTGTTTCTCAATGTGAAACACAAACTCTCAGTTTGAATTCTATTGCGTTTGCCTTGGCACGTGTGATTGTG
CTTGTTACTTCACAGgttccaattggaatggatcttgtgcttgcagAGTTTCATAAGGCTTGCATATTTACCGTTCCAAAATACATTCCATATTCAAAGATTGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGAAAGTACAGATAATTATCTGGCTCGCATGAAAGC
ATATGTGACTCTATATGCAGCAATCATTCAGGAGCATGCTGGGCACTTTCTAAGGAGTCAAAATGTGGTGGGGGCTATAACACCACCCTGCTTTCACCAACCAACCTGGTTGAACTCTAGTGGCTATCTTTCTA
Intron 2 GTATCATTCG ... TGCACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.86 | 19 | 56 | 46 |
| A2 | 70 | 12 | 25 | 31 |
| A3 | 77.61 | 15 | 47 | 57 |
| A4 | 84.38 | 5 | 28 | 26 |
| A5 | 57.58 | 7 | 8 | 11 |
| A6 | 47.37 | 5 | 0 | 9 |
| A7 | 78.57 | 6 | 26 | 18 |
| A8 | 100 | 0 | 3 | 7 |
| A9 | 71.22 | 20 | 61 | 38 |
| A10 | 85.54 | 6 | 30 | 41 |
>TRINITY_DN42526_c0_g1_i7 from sample A9 / Example spliced isoformCTTTAATTAATGCATACAATTACTAATTTAGTAAGCAGTAAGTGCTTACTGTCACCTATTTCGCGGGCAGAACTTCAAGCTTCAAATTTCACTACGAAACCATTCCCAAAAGTAATTAGAGAGAACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACCGAATTGGCCAAGCATGAATACCAGGTTA
TTACAATGGACTACTGCATTTTTGCAAATGTAGCCTTGCCAAATACCTAAGTTTTTAACAGCTTCAAAGTTGCGCCCATTACCGACGGTTACTTTCGGGTTTATGACGAACGCAGCATCCAAAGCCCCAAAAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGAAAGAACACGGACATACTACC
AGAAAGAAGCCGAGTGCTTAAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATT
GCTGCCGGAAAATAAACCTTGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGACTATTCTCAACCAGAAATTA
ACTCAAGAAGTGATTCTGAAGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCTAGGACGGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAACAGAAAGGTCGGCT
ACAGCACTTCAGCTTGTTGAGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTTGAAGAAGCTAGAAAGAGAGA
AGCCCGGGAGAATAAGGAACGCCAAGAGAAAGCCAGGGCAGAAGCTGAGGCTAAATTGAAGGCGGAGATGAAAGCTGCTGCTGAAGCACGGAAAGCAGCAGCAGAAGCAGAGAAAAAGGCTGCTGCAGAAGCAGAAAAAAAGGCTGCCAAAGAAGCAGAGAAAAAAGCAGCTTTAGAAGCAGAAAAAAGGGCAGCTTCAG
AAGCAGAGAGGAAAGCCAAAGGAGAGGAAAAAAGATCTCAGGAATCGCAGCAGAAGTCACCCAGGACATTGTCCACAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATTTAAGTAAGGAATTG
AGAAATTGTGAAAGGCAGATTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGGCTGTTTCTCAATGTGAAACACAAACTCTCAGTTTGAATTCTATTGCGTTTGC
CTTGGCACGTGTGATTGTGCTTGTTACTTCACAGGTTCCAATTGGAATGGATCTTGTGCTTGCAGAGTTTCATAAGGCTTGCATATTTACCGTTCCAAAATACATTCCATATTCAAAGATTGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGAAAGTACAGATAATT
ATCTGGCTCGCATGAAAGCATATGTGACTCTATATGCAGCAATCATTCAGACAGACATACCAGGTGTGAACAACCTTCATGGTGTGAAGGATGGATGGGCTTGGATGGCTCGATTTCTAAATGTACTCCCTCCCAACAGGTTTACAGCAGCTGCTTTAGAGATATTTTTGAAGATAGCCGGTTTCCATCTCTTTCAAGCA
TATCCTAAGCCTTTCACAAAACTTTTAAATGCTATATCAAGAGAGTTTATAGATAAGCTGAAATCACAAAATGATCCAGATTCAAATCCAGTGATTAGCAACTTGGAGACATACTTGACATCTCAGCAATTCAGAAAAGAGCCTGAAGGACGTGCCTTGGCTATCACAGATGAGTCGAAAAACTTACGGGCCTGAGAAAG
CTGATGCTTTTCATTTGAAAGAAAAGCACTACTAGAATCTGAGGCACTTTTTACTTGCAAGGACAGTTATTTATTTCTCAATCGAGTGTTGAATGGAGTTTTTCTGTATTTATAGTTTGCCAATGTATTCAAAAGTTTGGCAGGCTTCAGTTATTGAAATTGAAGATTTCCTTGGTACACACGTACATTTGAGTAGAGAT
ATAACAAAGGTTTCCTTTAGAGAGTACTGAAAAGGAGCACCTCAGTATTTGGTGTCATTATCACTGCCACAATTTAACTAGAATTAGGCATGGGTTTTGTGACCTTTATCTCTCAATAATCCAAACCACACAATTCCTGATAAATCTTGTTATCAATATCATGTTTTATTCCAATTTCAAATCGTCAGAGTATTAATTTT
CCTCATTTTTAGAATGATTTTGATTTTAGAACACCAACTGAAAACAAAAAATTGTGACATGAATACAGTAAGTAATTTGCAATTTTGAGGGGTCAATACACTCAGTCTCATAATATTACATTGCAAATTCACAATGAGTCAAGTTGTGGTTGTGTCAGCTTCTAAGAAAAGCTGTTTGGCCATGGATCGCTAAGATTTAG
TATTTCATGGTATAATGTTAGTGGCAGCAAATGGGTTTATTTTCTTTAGTGGTGTCTCTATTTTTTTCTATAAC
>TRINITY_DN42526_c0_g1_i2 from sample A9 / Example unspliced isoform:CTTTAATTAATGCATACAATTACTAATTTAGTAAGCAGTAAGTGCTTACTGTCACCTATTTCGCGGGCAGAACTTCAAGCTTCAAATTTCACTACGAAACCATTCCCAAAAGTAATTAGAGAGAACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACCGAATTGGCCAAGCATGAATACCAGGTTA
TTACAATGGACTACTGCATTTTTGCAAATGTAGCCTTGCCAAATACCTAAGTTTTTAACAGCTTCAAAGTTGCGCCCATTACCGACGGTTACTTTCGGGTTTATGACGAACGCAGCATCCAAAGCCCCAAAgtatcattcgaaccctctctgttgtgaagctccggtctcaaccttgaaatatttgtcggacttgaaatt
gcgaaccctattggatttcaccgaactattcgcattcgaatcgaattttcgcatttctgaattttttagtctgattcggacgaatttggtaactatgttttaaaggttggcctctgtagctaagtcgctggctacattggatgcactgcagAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGA
AAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTTAAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAA
GAGAAGTACAGTTTTCCATTGCTGCCGGAAAATAAACCTTGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGA
CTATTCCCAACCAGAAATTAACTCAAGAAGGTGCCGTTTTTCAAATCAGATTTCTGTGTAGCTCCATAATCACCACTGAAATAACAGAAAACCAAATGGGATGCTGCAGTTACGATTAGTATTATGCTAGATAGCCTCGTCTTTCTTTTCTTCAAAACCCGGG
Intron 3 GTTCCAATTG ... ATATTCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.7 | 38 | 32 | 76 |
| A2 | 60 | 16 | 18 | 30 |
| A3 | 58.73 | 13 | 15 | 22 |
| A4 | 54.05 | 17 | 14 | 26 |
| A5 | 41.18 | 5 | 0 | 7 |
| A6 | 64.44 | 8 | 10 | 19 |
| A7 | 78.12 | 14 | 44 | 56 |
| A8 | 64.37 | 31 | 40 | 72 |
| A9 | 53.4 | 48 | 44 | 66 |
| A10 | 65.77 | 19 | 32 | 41 |
>TRINITY_DN42526_c0_g1_i8 from sample A9 / Example spliced isoformGAATTGAGAAATTGTGAAAGGCAGATTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGGCTGTTTCTCAATGTGAAACACAAACTCTCAGTTTGAATTCTATTGC
GTTTGCCTTGGCACGTGTGATTGTGCTTGTTACTTCACAGATTGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGAAAGTACAGATAATTATCTGGCTCGCATGAAAGCATATGTGACTCTATATGCAGCAATCATTCAGACAGACATACCAGGTGTGAACAACCTTC
ATGGTGTGAAGGATGGATGGGCTTGGATGGCTCGATTTCTAAATGTACTCCCTCCCAACAGGTTTACAGCAGCTGCTTTAGAGATATTTTTGAAGATAGCCGGTTTCCATCTCTTTCAAGCATATCCTAAGCCTTTCACAAAACTTTTAAATGCTATATCAAGAGAGTTTATAGATAAGCTGAAATCACAAAATGATCCA
GATTCAAATCCAGTGATTAGCAACTTGGAGACATACTTGACATCTCAGCAATTCAGAAAAGAGCCTGAAGGACGTGCCTTGGCTATCACAGATGAGTCGAAAAACTTACGGGCCTGAGAAAGCTGATGCTTTTCATTTGAAAGAAAAGCACTACTAGAATCTGAGGCACTTTTTACTTGCAAGGACAGTTATTTATTTCT
CAATCGAGTGTTGAATGGAGTTTTTCTGTATTTATAGTTTGCCAATGTATTCAAAAGTTTGGCAGGCTTCAGTTATTGAAATTGAAGATTTCCTTGGTACACACGTACATTTGAGTAGAGATATAACAAAGGTTTCCTTTAGAGAGTACTGAAAAGGAGCACCTCAGTATTTGGTGTCATTATCACTGCCACAATTTAAC
TAGAATTAGGCATGGGTTTTGTGACCTTTATCTCTCAATAATCCAAACCACACAATTCCTGATAAATCTTGTTATCAATATCATGTTTTATTCCAATTTCAAATCGTCAGAGTATTAATTTTCCTCATTTTTAGAATGATTTTGATTTTAGAACACCAACTGAAAACAAAAAATTGTGACATGAATACAGTAAGTAATTT
GCAATTTTGAGGGGTCAATACACTCAGTCTCATAATATTACATTGCAAATTCACAATGAGTCAAGTTGTGGTTGTGTCAGCTTCTAAGAAAAGCTGTTTGGCCATGGATCGCTAAGATTTAGTATTTCATGGTATAATGTTAGTGGCAGCAAATGGGTTTATTTTCTTTAGTGGTGTCTCTATTTTTTTCTATAAC
>TRINITY_DN42526_c0_g1_i4 from sample A9 / Example unspliced isoform:CTTTAATTAATGCATACAATTACTAATTTAGTAAGCAGTAAGTGCTTACTGTCACCTATTTCGCGGGCAGAACTTCAAGCTTCAAATTTCACTACGAAACCATTCCCAAAAGTAATTAGAGAGAACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACCGAATTGGCCAAGCATGAATACCAGGTTA
TTACAATGGACTACTGCATTTTTGCAAATGTAGCCTTGCCAAATACCTAAGTTTTTAACAGCTTCAAAGTTGCGCCCATTACCGACGGTTACTTTCGGGTTTATGACGAACGCAGCATCCAAAGCCCCAAAGTATCATTCGAACCCTCTCTGTTGTGAAGCTCCGGTCTCAACCTTGAAATATTTGTCGGACTTGAAATT
GCGAACCCTATTGGATTTCACCGAACTATTCGCATTCGAATCGAATTTTCGCATTTCTGAATTTTTTAGTCTGATTCGGACGAATTTGGTAACTATGTTTTAAAGGTTGGCCTCTGTAGCTAAGTCGCTGGCTACATTGGATGCACTGCAGAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGA
AAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTTAAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAA
GAGAAGTACAGTTTTCCATTGCTGCCGGAAAATAAACCTTGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGA
CTATTCTCAACCAGAAATTAACTCAAGAAGTGATTCTGAAGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCTAGGACGGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAG
CTGAAACAGAAAGGTCGGCTACAGCACTTCAGCTTGTTGAGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTT
GAAGAAGCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAACGCCAAGAGAAAGCCAGGGCAGAAGCTGAGGCTAAATTGAAGGCGGAGATGAAAGCTGCTGCTGAAGCACGGAAAGCAGCAGCAGAAGCAGAGAAAAAGGCTGCTGCAGAAGCAGAAAAAAAGGCTGCCAAAGAAGCAGAGAAAAAAGCAGCTTTAGAAGC
AGAAAAAAGGGCAGCTTCAGAAGCAGAGAGGAAAGCCAAAGGAGAGGAAAAAAGATCTCAGGAATCGCAGCAGAAGTCACCCAGGACATTGTCCACAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATC
CAAATTTAAGTAAGAGTCCGAATCTTTAAAATCAGAATCTGAATATTCGTCTTCGACTTTGGCTTCAACACAAGGAATTGAGAAATTGTGAAAGGCAGATTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGT
ATACTACTTACAGGCTTTGCTGTGAAGGCTGTTTCTCAATGTGAAACACAAACTCTCAGTTTGAATTCTATTGCGTTTGCCTTGGCACGTGTGATTGTGCTTGTTACTTCACAGgttccaattggaatggatcttgtgcttgcagagtttcataaggcttgcatatttaccgttccaaaatacattccatattcaaagAT
TGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGAAAGTACAGATAATTATCTGGCTCGCATGAAAGCATATGTGACTCTATATGCAGCAATCATTCAGACAGACATACCAGGTGTGAACAACCTTCATGGTGTGAAGGATGGATGGGCTTGGATGGCTCGATTTCTAA
ATGTACTCCCTCCCAACAGGTTTACAGCAGCTGCTTTAGAGATATTTTTGAAGATAGCCGGTTTCCATCTCTTTCAAGCATATCCTAAGCCTTTCACAAAACTTTTAAATGCTATATCAAGAGAGTTTATAGATAAGCTGAAATCACAAAATGATCCAGATTCAAATCCAGTGATTAGCAACTTGGAGACATACTTGACA
TCTCAGCAATTCAGAAAAGAGCCTGAAGGACGTGCCTTGGCTATCACAGATGAGTCGAAAAACTTACGGGCCTGAGAAAGCTGATGCTTTTCATTTGAAAGAAAAGCACTACTAGAATCTGAGGCACTTTTTACTTGCAAGGACAGTTATTTATTTCTCAATCGAGTGTTGAATGGAGTTTTTCTGTATTTATAGTTTGC
CAATGTATTCAAAAGTTTGGCAGGCTTCAGTTATTGAAATTGAAGATTTCCTTGGTACACACGTACATTTGAGTAGAGATATAACAAAGGTTTCCTTTAGAGAGTACTGAAAAGGAGCACCTCAGTATTTGGTGTCATTATCACTGCCACAATTTAACTAGAATTAGGCATGGGTTTTGTGACCTTTATCTCTCAATAAT
CCAAACCACACAATTCCTGATAAATCTTGTTATCAATATCATGTTTTATTCCAATTTCAAATCGTCAGAGTATTAATTTTCCTCATTTTTAGAATGATTTTGATTTTAGAACACCAACTGAAAACAAAAAATTGTGACATGAATACAGTAAGTAATTTGCAATTTTGAGGGGTCAATACACTCAGTCTCATAATATTACA
TTGCAAATTCACAATGAGTCAAGTTGTGGTTGTGTCAGCTTCTAAGAAAAGCTGTTTGGCCATGGATCGCTAAGATTTAGTATTTCATGGTATAATGTTAGTGGCAGCAAATGGGTTTATTTTCTTTAGTGGTGTCTCTATTTTTTTCTATAAC
Intron 4 GCTGTTTCTC ... TACTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 22 | 34 | 32 |
| A2 | 66.67 | 9 | 18 | 18 |
| A3 | 63.16 | 14 | 33 | 15 |
| A4 | 68.18 | 7 | 16 | 14 |
| A5 | 27.27 | 4 | 3 | 0 |
| A6 | 54.17 | 11 | 16 | 10 |
| A7 | 53.94 | 38 | 45 | 44 |
| A8 | 50.35 | 35 | 31 | 40 |
| A9 | 59.76 | 34 | 57 | 44 |
| A10 | 52.54 | 28 | 30 | 32 |
>TRINITY_DN42991_c0_g1_i2 from sample A6 / Example spliced isoformTCAACCAGAAATTAACTCAAGAAGTGATTCTGAAGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCTAGGACGGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAA
CAGAAAGGTCGGCTACAGCACTTCAGCTTGTTGAGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTTGAAGAA
GCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAACGCCAAGAGAAAGCCAGGGCAGAAGCTGAGGCTAAATTGAAGGCGGAGATGAAAGCTGCTGCTGAAGCACGGAAAGCAGCAGCAGAAGCAGAGAAAAAGGCTGCTGCAGAAGCAGAAAAAAAGGCTGCCAAAGAAGCAGAGAAAAAAGCAGCTTTAGAAGCAGAAAA
AAGGGCAGCTTCAGAAGCAGAGAGGAAAGCCAAAGGAGAGGAAAAAAGATCTCAGGAATCGCAGCAGAAGTCACCCAGGACATTGTCCACAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATT
TAAGTAAGGAATTGAGAAATTGTGAAAGGCAGATTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGGTTCCAATTGGAATGGATCTTGTGCTTGCAGAGTTTCAT
AAGGCTTGCATATTTACCGTTCCAAAATACATTCCATATTCAAAGATTGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGAAAGTACAGATAATTATCTGGCTCGCATGAAAGCATATGTGACTCTATATGCAGCAATCATTCAGACAGACATACCAGGTGTGAACAA
CCTTCATGGTGTGAAGGATGGATGGGCTTGGATGGCTCGATTTCTAAATGTACTCCCTCCCAACAGGTTTACAGCAGCTGCTTTAGAGATATTTTTGAAGATAGCCGGTTTCCATCTCTTTCAAGCATATCCTAAGCCTTTCACAAAACTTTTAAATGCTATATCAAGAGAGTTTATAGATAAGCTGAAATCACAAAATG
ATCCAGATTCAAATCCAGTGATTAGCAACTTGGAGACATACTTGACATCTCAGCAATTCAGAAAAGAGCCTGAAGGACGTGCCTTGGCTATCACAGATGAGTCGAAAAACTTACGGGCCTGAGAAAGCTGATGCTTTTCATTTGAAAGAAAAGCACTACTAGAATCTGAGGCACTTTTTACTTGCAAGGACAGTTATTTA
TTTCTCAATCGAGTGTTGAATGGAGTTTTTCTGTATTTATAGTTTGCCAATGTATTCAAAAGTTTGGCAGGCTTCAGTTATTGAAATTGAAGATTTCCTTGGTACACACGTACATTTGAGTAGAGATATAACAAAGGTTTCCTTTAGAGAGTACTGAAAAGGAGCACCTCAGTATTTGGTGTCATTATCACTGCCACAAT
TTAACTAGAATTAGGCATGGGTTTTGTGACCTTTATCTCTCAATAATCCAAACCACACAATTCCTGATAAATCTTGTTATCAATATCATGTTTTATTCCAATTTCAAATCGTCAGAGTATTAATTTTCCTCATTTTTAGAATGATTTTGATTTTATAACACCAACTGAAAACAAAAAATTGTGACATGAATACAGTAAGT
AATTTGCAATTTTGAGGGGTCAATACACTCAGTCTCATAAT
>TRINITY_DN42991_c0_g1_i1 from sample A6 / Example unspliced isoform:AGGCTTTAACAGCTTCAAAGCTGCGCCCATCACCGACGGTTACTTTCGGGTTTATGACGAACGCAGCATCCAAAGCCCCAAAGTATCATTCGAACCCTCTCTGTTGTGAAGCTCCGGTCTCAACCTTGAAATATTTGTCGGACTTGAAATTGCGAACCCTATTGGATTTCACCGAACTATTCGCATTCGAATCGAATTTT
CGCATTTCTGAATTTTTTAGTCTGATTCGGACGAATTTGGTAACTATGTTTTAAAGGTTGGCCTCTGTAGCTAAGTCGCTGGCTACATTGGATGCACTGCAGAATATATTGGGCTTTATAACGGCATAAAGGGAGACGCTGTTTACAGGGAAAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTTAAATGTCTCC
ACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATTGCTGCCAGAAAATAAACCTTGTTCACGAA
GCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGACTATTCTCAACCAGAAATTAACTCAAGAAGTGATTCTGAAGCTGAAAAT
GACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCTAGGACGGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAACAGAAAGGTCGGCTACAGCACTTCAGCTTGTTGAGAAAGATAG
GGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTTGAAGAAGCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAACGCCAAGAGA
AAGCCAGGGCAGAAGCTGAGGCTAAATTGAAGGCGGAGATGAAAGCTGCTGCTGAAGCACGGAAAGCAGCAGCAGAAGCAGAGAAAAAGGCTGCTGCAGAAGCAGAAAAAAAGGCTGCCAAAGAAGCAGAGAAAAAAGCAGCTTTAGAAGCAGAAAAAAGGGCAGCTTCAGAAGCAGAGAGGAAAGCCAAAGGAGAGGAA
AAAAGATCTCAGGAATCGCAGCAGAAGTCACCCAGGACATTGTCCACAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATTTAAGTAAGGAATTGAGAAATTGTGAAAGGCAGATTGGTGTACG
CCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGgctgtttctcaatgtgaaacacaaactctcagtttgaattctattgcgtttgccttggcacgtgtgattgtgcttgttactt
cacagGTTCCAATTGGAATGGATCTTGTGCTTGCAGAGTTTCATAAGGCTTGCATATTTACCGTTCCAAAATACATTCCATATTCAAAGATTGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGAAAGTACAGATAATTATCTGGCTCGCATGAAAGCATATGTGACT
CTATATGCAGCAATCATTCAGACAGACATACCAGGTGTGAACAACCTTCATGGTGTGAAGGATGGATGGGCTTGGATGGCTCGATTTCTAAATGTACTCCCTCCCAACAGGTTTACAGCAGCTGCTTTAGAGATATTTTTGAAGATAGCCGGTTTCCATCTCTTTCAAGCATATCCTAAGCCTTTCACAAAACTTTTAAA
TGCTATATCAAGAGAGTTTATAGATAAGCTGAAATCACAAAATGATCCAGATTCAAATCCAGTGATTAGCAACTTGGAGACATACTTGACATCTCAGCAATTCAGAAAAGAGCCTGAAGGACGTGCCTTGGCTATCACAGATGAGTCGAAAAACTTACGGGCCTGAGAAAGCTGATGCTTTTCATTTGAAAGAAAAGCAC
TACTAGAATCTGAGGCACTTTTTACTTGCAAGGACAGTTATTTATTTCTCAATCGAGTGTTGAATGGAGTTTTTCTGTATTTATAGTTTGCCAATGTATTCAAAAGTTTGGCAGGCTTCAGTTATTGAAATTGAAGATTTCCTTGGTACACACGTACATTTGAGTAGAGATATAACAAAGGTTTCCTTTAGAGAGTACTG
AAAAGGAGCACCTCAGTATTTGGTGTCATTATCACTGCCACAATTTAACTAGAATTAGGCATGGGTTTTGTGACCTTTATCTCTCAATAATCCAAACCACACAATTCCTGATAAATCTTGTTATCAATATCATGTTTTATTCCAATTTCAAATCGTCAGAGTATTAATTTTCCTCATTTTTAGAATGATTTTGATTTTAT
AACACCAACTGAAAACAAAAAATTGTGACATGAATACAGTAAGTAATTTGCAATTTTGAGGGGTCAATACACTCAGTCTCATAAT
Intron 5 GTTATTACAA ... TGCACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.61 | 14.9 | 22.3 | 46 |
| A2 | 71.39 | 12.4 | 5.4 | 31 |
| A3 | 82.61 | 12 | 8 | 57 |
| A4 | 78.79 | 7 | 5 | 26 |
| A5 | 64.71 | 6 | 4 | 11 |
| A6 | 64.29 | 5 | 0 | 9 |
| A7 | 75.58 | 5.9 | 6.9 | 18 |
| A8 | 94.64 | 0.4 | 0.9 | 7 |
| A9 | 75.36 | 12.4 | 6.4 | 38 |
| A10 | 80.67 | 10.3 | 9.3 | 41 |
>TRINITY_DN109325_c0_g1_i10 from sample A4 / Example spliced isoformACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACCGAATTGGCCAAGCATGAATACCAGAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGAAAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTTAAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCAC
ACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATTGCTGCCAGAAAATAAACCTTGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGT
CTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGACTATTCCCAACCAGAAATTAACTCAAGAAGTGATTCTGAAGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAAT
CAACTAATGCCTAGGACGGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAACAGAAAGGTCGGCTACAGCACTTCAGCTTGTTGAGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGT
AGACAAGCAATATCAACGAAAAATTGATTCTGAAGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCGAGGACAGGGGTTGTGGAAGGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAA
CAGAAAGGTCGGCTACAGCACTTCAGCTTGTTGAGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTTGAAGAA
GCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAACGCCAAGAGAAAGCCAGGGCAGAAGCTGAGGCTAAATTGAAGGCGGAGATGAAAGCTGCTGCTGAAGCACGGAAAGCAGCAGCAGAAGCAGAGAAAAAGGCTGCTGCAGAAGCAGAAAAAAGGGCTGCCAAAGAAGCAGAGAAAAAAGCAGCTTTAGAAGCAGAAAA
AAGGGCAGCTTCAGAAGCAGAGAGGAAAGCCAAAGGAGAGGAAAAAAGATCTCAGGAATCGCAGCAGAAGTCACCCAGGACATTGTCCACAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCGAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATT
TAAGTAAGGAATTGAGAAATTGTGAAAGGCAGATTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCAAATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGGCTGTTTCTCAATGTGAAACACAAACTCTCAGCTTGAAT
TCTATTGCGTTTGCCTTGGCACGTGTGATTGTGCTTGTTACTTCACAGGTTCCAATTGGAATGGATCTTGTGCTTGCAGAGTTTCATAAGGCTTGCATATTTACCGTTCCAAAATACATTCCATATTCAAAGATTGCTTTTGAGTCGGAAAATTTGTACTACAAGACAGTTGGATACCGAGAAGATAATGGAAAGATTGA
AAGTACAGATAATTATCTGGCTCGCATGAAAGCATATGTGACTCTATATGCAGCAATCATTCAGACAGACATACCAGGTGTGAACAACCTTCATGGTGTGAAGGATGGATGGGCTTGGATGGCTCGATTTCTAAATGTACTCCCTCCCAACAGGTTTACAGCAGCTGCTTTAGAGATATTTTTGAAGATAGCTGGTTTCC
GTCTCTTTCAAGCATATCCTAAGCCTTTCACAAAACTTTTAAATGCTATATCAAGAGAGTTTATAGATAAGCTGAAATCACAAAATGATCCAGATTCAAATCCAGTGATTAGCAACTTGGAGACATACTTGACATCTCAGCAATTCAGAAAAGAGCCTGAAGGACGTGCCTTGGCTATCACAGATGAGTCGAAAAACTTA
CGGGCCTGAGAAAGCTGATGCTTTTCATTTGAAAGAAAAGCACTACTAGAATCTGAGGCACTTTTTACTTGCAAGGACAGTTATTTATTTCCCAATCGAGTGTTGAATGGAGTTTTTCTGTATTTATAGTTTGCCAATGTATTCAAAAGTTTGGCAGGCTTCAGTTATTGAAATTGAAGATTTCCTTGGTACACACGTAC
ATTTGAGTAGAGATATAACAAAGGTTTCCTTTAGAGAGTACTGAAAAGGAGCACCTCAGTATTTGGTGTCATTATCACTGCCACAATTTAACTAGAATTAGGCATGGGTTTTGTGACCTTTATCTCTCAATAATCCAAACC
>TRINITY_DN109325_c0_g1_i11 from sample A4 / Example unspliced isoform:ACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACCGAATTGGCCAAGCATGAATACCAGgttattacaatggactactgcatttttgcaaatgtagccttgccaaatacctaagtttttaacagcttcaaagttgcgcccattaccgacggttactttcgggtttatgacgaacgcagcatccaaag
ccccaaagtatcattcgaaccctctctgttgtgaagctccggtctcaaccttgaaatatttgtcggacttgaaattgcgaaccctattggatttcaccgaactattcgcattcgaatcgaattttcgcatttctgaattttttagtctgattcggacgaatttggtaactatgttttaaaggttggcctctgtagctaag
tcgctggctacattggatgcactgcagAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGAAAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTTAAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAA
TGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATTGCTGCCAGAAAATAAACCTTGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAAAACCGTTTGTGATGC
GTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGACTATTCCCAACCAGAAATTAACTCAAGAAGAGGGCCTTTGAAGTTGGAGTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAA
CTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATTGCTGCC
Intron 6 GCTAAATTGA ... TTGTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.42 | 14 | 60 | 62.7 |
| A2 | 72.68 | 25 | 78 | 55 |
| A3 | 86.12 | 9 | 43 | 68.7 |
| A4 | 64.71 | 14 | 22 | 29.3 |
| A5 | 69.49 | 9 | 21 | 20 |
| A6 | 76 | 3 | 3 | 16 |
| A7 | 80.65 | 20 | 71 | 95.7 |
| A8 | 74.47 | 24 | 67 | 73 |
| A9 | 91.53 | 8 | 86 | 87 |
| A10 | 81.72 | 17 | 78 | 74 |
>TRINITY_DN121239_c0_g1_i7 from sample A3 / Example spliced isoformTTGTATGTGAAATTGTGAATAAGCCTGCAGTTGTTGAATTTCAGAGTAACCATGGAATTGTGTGTCTGTCAGCTATCCGGCTCTCTGTTTATGTCATTGAAATTTGGTCTATTTGTTTGTGAATCTGTCTATCTATTTAGAGTGCTGAAGCCTGAACATCGAGTGTCTCTATCACCTCTATAAAGGCAATAATGTGCATG
TACTTAGGTTGGATTGAAGTGATAGTTGCTGAATTTCAGAGTAACCATTTTCATATTGTTGATTATTTAATCTTAAAATATATTATTAAACCCGAGATATCTTAGTGAATTTATTATTGCAGTGCAGAAGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAAT
AAGAAAAGAAGCAGCTGTTGAAGAAGCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAACGCCAAGAGAAAGCCAGGGCAGAAGCTGAGGTATCAATGTCAAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATTTAAG
TAAGAGTCCGAATCTTTAAAATCAGAATCTGAATATTCGTCTTCGACTTTGGCTTCAACACAAGGTTTGCAGAGATTCTCAAGTGTGCTGTTCATTTCTTCCATTACTTTATTCATTGTGTTTTTAAAATCTCCAGTGGTGGATTTCATCATGTATGGCTGGGTTATGCAGAATTTAACCCCCGAATTGGTGGTAGATTC
ACTCTGATACCAATGTTGCA
>TRINITY_DN121239_c0_g1_i1 from sample A3 / Example unspliced isoform:AAGTAATTAGAGAGAACGCTCCAACCGCCACAAACTGTGCCAGATTTAGCAGGAGCGATTACTGAATTGGCCAAGCATGAATACCAGGTTATTACAATGGACTACTGCATTTTTGCAAATGTAGCCTTGCCAAATACCTAAGTTTTTAACAGCTTCAAAGTTGCGCCCATTACCGACGGTTACTTTCGGGTTTATGACGA
ACGCAGCATCCAAAGCCCCAAAGTATCATTCGAACCCTCTCTGTTGTGAAGCTCCGGTCTCAACCTTGAAATATTTGTCGGACTTGAAATTGCGAACCCTATTGGATTTCACCGAACTATTCGCATTCGAATCGAATTTTCGCATTTCTGAATTTTTTAGTCTGATTCGGACGAATTTGGTAACTATGTTTTAAAGGTTG
GCCTCTGTAGCTAAGTCGCTGGCTACATTGGATGCACTGCAGAATATATTGGGCTTTATAACGGCATAAGGGGAGACGCTGTTTACAGGGAAAGAACACGGACATACTACCAGAAAGAAGCCGAGTGCTTAAATGTCTCCACAACCATCGCCATTGGTGAACAGGCCCACACGCCTTCCAGAAGGGCCTTTGAAGTTGGA
GTTGCCCTTGAAGAATGCTCGTGGAGTTTCATTTGATCCTGATCCTGACTGGACATTAGATGATCTTAAAACTGAACTAGAGGCCATTGAAGAGAAGTACAGTTTTCCATTGCTGCCAGAAAATAAACCTTGTTCACGAAGCGGTTCAATCTTTTCATGTCAAGACTTGTCTGCAGTGGCAGATTTTGGGAGAAGCAGAA
AACCGTTTGTGATGCGTGCATTTGATGATGACTTTGATAGCAGCGATGAAGATGCTGATCTGGATGTTGATATTTCAAGAGGCATCTATGACTATTCCCAACCAGAAATTAACTCAAGAAGTGATTCTGAAGCTGAAAATGACCAATTGGATCCAGAGGTAGCTGAAAATCAACTAATGCCGAGGACAGGGGTTGTGGAA
GGTTCTCTGCTTGAATTAGAACGTGAGAGAATACTCAGAGTTCAGGAGGAAATTCGGGAAAGAATTATCTCATCACAGGCAGATCTAGAAGCTGAAACAGAAAGGTCGGCTACAGCACTTCAGCTTGTTGAGAAAGATAGGGAGTCAAAGCGGGAGATGGCCCGACGCGTAGACAAGCAATATCAACGAAAAATTGCAGA
AGCTTGTGATAATCATCTTTCTGCTGTTCAAAGAGATCATCAACAACGTTCTCAGATAGAAGAGCGTAGAATAAGAAAAGAAGCAGCTGTTGAAGAAGCTAGAAAGAGAGAAGCCCGGGAGAATAAGGAACGCCAAGAGAAAGCCAGGGCAGAAGCTGAGgctaaattgaaggcggagatgaaagctgctgctgaagcac
ggaaagcagcagcagaagcagagaaaaaggctgctgcagaagcagaaaaaaaggctgccaaagaagcagagaaaaaagcagctttagaagcagaaaaaagggcagcttcagaagcagagaggaaagccaaaggagaggaaaaaagatctcaggaatcgcagcagaagtcacccaggacattgtccacagGTATCAATGTC
AAAGTTGCAGAGACTGCAGCAAAACTGGAGGCCGAGAGAATTGCAAAATTCAAGGCCCTAGAGGAAGAGTGCCAGACTTTGAGATCCAATCCAAATTTAAGTAAGGAATTGAGAAATTGTGAAAGGCAGATTGGTGTACGCCTGAGGCAAATAACTGGAACTCAAGAACAAGTAAGGGCTAAATCAACTGAATTGTTCCA
AATGATCACCAATCCTCGTGTTCCTCAGTGTATACTACTTACAGGCTTTGCTGTGAAGGTATTACTCTTCTTATCATTTTTCTAAAGATTTCTACTCTACAGTCATTGCTGCATGGAGTGTTTTTGATTGCATACCATTTATACTTTTTTGTTGTAAATGACGTTATCTTTAATTT