sp|Q8L4H0|WEE1_ARATH ----> Wee1-like protein kinase
Intron 1 GTAATGTATT ... CAACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.85 | 3 | 5 | 2 |
| A2 | 18.92 | 15 | 3 | 4 |
| A3 | 25.93 | 10 | 2 | 5 |
| A4 | 6.25 | 15 | 2 | 0 |
| A5 | 0 | 5 | 0 | 0 |
| A6 | 20.83 | 19 | 5 | 5 |
| A7 | 27.27 | 36 | 13 | 14 |
| A8 | 23.77 | 85 | 37 | 16 |
| A9 | 26.42 | 71 | 21 | 30 |
| A10 | 16.34 | 64 | 11 | 14 |
>TRINITY_DN45584_c0_g1_i13 from sample A8 / Example spliced isoformGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCT
AACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCA
TGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGG
CTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGACAATCTCTGTGATTACGAAAGGAATTTTATCAACTGTGTACAAAGTTTTGAATAGA
GTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGTGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATC
TTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATA
TAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATG
CGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCT
GTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCATGCAAAACATATATATGTAATGGTTGTTGCAATTAAAATGAAGTCTTAAAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAA
AGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAAAAATTGCC
>TRINITY_DN45584_c0_g1_i4 from sample A8 / Example unspliced isoform:GATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCT
AACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCA
TGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGgtaatgtattttgtttacatatttcaaatatgaaatata
atgatggtgaatgatgtttagtaacttaataaaactcgtaaaacacattctattaaactttgcttatttatcttaaactctaattattaatgttgaaagttttattaaaaaaacacattctattaaactttgcttatttatcttaaactctaattattaatgttgaaagttttattaaaagatttattaatagttaaaat
agccatgtattttcatttttttaagattgtaaaagctatcataatttaatttgtcaaacttttagtggtaatgaaagagtcatcattgctactgactcatcatttttctaaaagaaaactatgctaccggaaataacattgtcgatggtccataagggggtagacttgtactcttgttagatatacctatagatcctaga
ccgagctcttagccaatcaaaaataattttatgtaaccacatagtctctcttaattataaataaaacatctatcaatttattattataccaaaaatcttagttgttaggtcaaatcaaaattcacccatttctcataaaaaaataaaaaataatttataaaattatcatatataattgtaaatccttatacgagggtcac
tccaatgaggcttaagaccatttatgctttgataaactaaataatggataatagaaaacactaatttctctgaaattcgatatctactgtaatcagttataaaaagaaattcatataattgaagtgcaatcgctcatatgcatgaaatgcctcactctcctgctcaacaattaaatattggattctgctctctcatgagt
ttcttgtgttcaacttgcagAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTG
TGAAAATCTCTGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGTGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCC
TTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAA
TGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAG
GATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGC
CTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCATGCAAAACATATATATGTAATGGTTGTTGCAATTAA
AATGAAGTCTTAAAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAAAGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAAAAATTGCC
Intron 2 GTATAGCAAT ... TTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.3 | 14 | 4 | 12 |
| A2 | 24.98 | 13 | 5.7 | 3 |
| A3 | 15.72 | 25 | 7 | 2.3 |
| A4 | 23.5 | 32 | 4 | 15.7 |
| A5 | 25 | 3 | 1 | 1 |
| A6 | 16.64 | 35 | 6.7 | 7.3 |
| A7 | 14.7 | 87 | 16.3 | 13.7 |
| A8 | 19.2 | 128.3 | 31 | 30 |
| A9 | 19.12 | 172 | 50 | 31.3 |
| A10 | 17.3 | 116.3 | 16.3 | 32.3 |
>TRINITY_DN114278_c0_g1_i4 from sample A1 / Example spliced isoformGAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGT
TCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGT
GCATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAAATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTT
GGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGAAAATCTCTGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGTTTTGAA
TAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGTGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAA
AATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGT
GATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTAT
GATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCA
TTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTG
>TRINITY_DN114278_c0_g1_i1 from sample A1 / Example unspliced isoform:GAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGT
TCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGT
GCATGGCAACGTATCTTCTCAGAGgtatagcaatgtatcttctaaggggtatattaaatttatatatatgtttatgtttttatacttagggggttaaatgcaaagaaaattaaccatataaatgcatatttgttgtttgcagCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTC
ACTTCAAATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGGTAATGTATTTTGTTTACATTTTTCAAATATGAAATATAATGATGGTGAATGATGTTTAGTAACTTAATAAAACTCG
Intron 3 GTATGTTCCA ... TGCAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.3 | 23 | 1 | 10 |
| A2 | 22.22 | 21 | 4 | 6 |
| A3 | 18.75 | 26 | 1 | 6 |
| A4 | 9.68 | 28 | 0 | 3 |
| A5 | 16.67 | 10 | 0 | 2 |
| A6 | 11.84 | 67 | 0 | 9 |
| A7 | 11.19 | 127 | 0 | 16 |
| A8 | 11.21 | 103 | 0 | 13 |
| A9 | 8.83 | 258 | 0 | 25 |
| A10 | 3.07 | 158 | 0 | 5 |
>TRINITY_DN107256_c0_g1_i3 from sample A2 / Example spliced isoformAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTT
CTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTG
CATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGG
GGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGAAAATCTCTGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGTTTTGAATA
GAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGTGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAA
TCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGA
TATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGA
TGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATT
CTGTAAATTGTATCAAC
>TRINITY_DN107256_c0_g1_i1 from sample A2 / Example unspliced isoform:AAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCgtatgttccaacagtttagataaatatttgcctactattttctttttgtaaattcaattgtattgaatgggattgattgatggcaatttttgtattatatgtgttgcaatacagGTC
TGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTG
ATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTC
AGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTG
ATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGAAAATCTCTGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGTGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAA
GTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCAT
TCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAAC
TACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCT
ATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAAC
Intron 4 GTACTTGTAC ... AAATTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.36 | 9.6 | 2.9 | 0.9 |
| A2 | 5.08 | 17.6 | 0.9 | 2.9 |
| A3 | 20.14 | 16.2 | 3.8 | 3.9 |
| A4 | 20.09 | 13.9 | 3.6 | 0 |
| A5 | 46.63 | 6.8 | 6.3 | 0 |
| A6 | 27.68 | 23.9 | 8.8 | 3.3 |
| A7 | 11.65 | 56.4 | 7 | 11 |
| A8 | 20.38 | 94.1 | 23.2 | 18.9 |
| A9 | 30.37 | 115.1 | 48.2 | 19.3 |
| A10 | 31.42 | 50.2 | 22 | 10.3 |
>TRINITY_DN43222_c0_g1_i11 from sample A7 / Example spliced isoformGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCT
AACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCA
TGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGG
CTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGACAATCTCTGTGATTACGAAAGGAATTTTATCAACTGTGTACAAAGTTTTGAATAGA
GTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATC
TTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATA
TAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGTAAGAAAT
GAGTCTTTTAGCTTAAGTTCTCCCTGTATTCATGAAGGAAATAAGTTAAGTTGTGTTTGCTTTCTAATTTTTTGTTTTTTCA
>TRINITY_DN43222_c0_g1_i5 from sample A7 / Example unspliced isoform:GATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCT
AACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCA
TGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGG
CTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTGGCTTGTAACCGACGCTTGGAACTTCATGTGTGTTTGTATTCATTCATTTATTGGATAGTCTCAGCTTTGCTCCATTTACAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGA
GGATCTGCGTTTTGAAAAAGACTTTGTGAAAATCTCTGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGgtacttgtactattctttgttgtgttgttgaacgacaaaatgttgggctttaa
acctactctcatccgaatttcatagaatgttatacctgcggcaatctatctattaatattccatttactttttttctttaatgagtgttgaaaccttaaaattggcagTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGTAAATTTAGCTTCCTCCTCCATGAGTATATGCATTCTTATGTTAGGC
CACAACAACCTACTAGGATGCAGATTTCAATTCCTTCTAAAGATTGGAATATTTTTTTGCAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTAC
TTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATT
TTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAAT
GATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAAT
ATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCATGCAAAACATATATATGTAATGGTTGTTGCAATTAAAATGAAGTCTTAAAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAAAGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAA
AAATTGCC
Intron 5 GTAAATTTAG ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.6 | 14.5 | 0 | 2 |
| A2 | 8.27 | 12.3 | 1 | 1 |
| A3 | 28.51 | 13.3 | 1 | 5 |
| A4 | 12.44 | 8.5 | 0 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 17.19 | 30.1 | 1 | 6 |
| A7 | 20.56 | 75.5 | 3 | 19 |
| A8 | 16.05 | 80.1 | 2 | 15 |
| A9 | 21.57 | 115.5 | 1 | 31 |
| A10 | 16.79 | 56.2 | 0 | 11 |
>TRINITY_DN43222_c0_g1_i11 from sample A7 / Example spliced isoformGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCT
AACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCA
TGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGG
CTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGACAATCTCTGTGATTACGAAAGGAATTTTATCAACTGTGTACAAAGTTTTGAATAGA
GTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATC
TTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATA
TAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGTAAGAAAT
GAGTCTTTTAGCTTAAGTTCTCCCTGTATTCATGAAGGAAATAAGTTAAGTTGTGTTTGCTTTCTAATTTTTTGTTTTTTCA
>TRINITY_DN43222_c0_g1_i2 from sample A7 / Example unspliced isoform:GATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCT
AACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCA
TGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAGATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGG
CTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGAAAATCTCTGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGTTTTGAATAGA
GTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGGTACTTGTACTATTCTTTGTTGTGTTGTTGAACGACAAAATGTTGGGCTTTAAACCTACTCTCATCCGAATTTCATAGAATGTTATACCTGCGGCAATCTATCTATTAATATTCCATTTACTTTTTTTCTTTAATGAG
TGTTGAAACCTTAAAATTGGCAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGgtaaatttagcttcctcctccatgagtatatgcattcttatgttaggccacaacaacctactaggatgcagatttcaattccttctaaagattggaatatttttttgcagGAATCCATGATAACATAGTAAGG
TATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAAT
TTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATT
CACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAA
TCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCATGCAAAACATATATATGTAATGGT
TGTTGCAATTAAAATGAAGTCTTAAAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAAAGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAAAAATTGCC
Intron 6 GTTGGCTTGT ... ACATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.79 | 10 | 3 | 8.2 |
| A2 | 25.51 | 13 | 6.9 | 2 |
| A3 | 29.6 | 12.9 | 5.8 | 5 |
| A4 | 15.38 | 11 | 0 | 4 |
| A5 | 20 | 4 | 2 | 0 |
| A6 | 42.81 | 22.1 | 12 | 21 |
| A7 | 34.03 | 59 | 27 | 34 |
| A8 | 52.13 | 66 | 71.5 | 72.2 |
| A9 | 44.62 | 84.7 | 67.4 | 69.2 |
| A10 | 30.01 | 61.5 | 25.7 | 27 |
>TRINITY_DN38698_c0_g1_i1 from sample A6 / Example spliced isoformGCGGTGGGAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACC
GAGTGGTTCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCTAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAG
AAAATGTGCATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAAATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAA
AAACTTGGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGGTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGAAAATCTCTGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGT
TTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGGTACTTGTACTATTCTTTGTTGTGTTGTTGAACGACAAAATGTTGGGCTTTAAACCTACTCTCATCCGAATTTCATAGAATGTTATACCTGCGGCAATCTATCTATTAATATTCCG
>TRINITY_DN38698_c0_g1_i3 from sample A6 / Example unspliced isoform:GCGGTGGGAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACC
GAGTGGTTCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCTAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAG
AAAATGTGCATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAAATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAA
AAACTTGGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGgttggcttgtaaccgacgcttggaacttcatgtgtgtttgtattcattcatttattggatagtctcagctttgctacatttacagGTTTTGTTGATATGGATTATCCTGCCAACG
GTACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGACAATCTCTGTGATTACGAAAGGAATTTTATCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTA
GGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCA
TATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATAT
ACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGAC
GAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCA
TGCAAAACATATATATGTAATGGTTGTTGCAATTAAAATGAAGTCTTAAAATTTCAAAAATCAAA
Intron 7 GTACTTGTAC ... ACATCCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 3 | 2.5 | 9 |
| A2 | 75 | 2 | 0.5 | 6 |
| A3 | 38.89 | 11 | 2.5 | 7 |
| A4 | 33.33 | 6 | 2 | 3 |
| A5 | 0 | 7 | 4 | 0 |
| A6 | 67.86 | 9 | 7.5 | 19 |
| A7 | 69.33 | 23 | 6 | 52 |
| A8 | 63.04 | 34 | 16 | 58 |
| A9 | 54.79 | 66 | 36.5 | 80 |
| A10 | 69.09 | 17 | 20.5 | 38 |
>TRINITY_DN42754_c0_g1_i7 from sample A10 / Example spliced isoformTGGGAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTCTGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGT
GGTTCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGCCCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAA
TGTGCATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAAATAAAACAAACCAGAGACACATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAAC
TTGGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTGGCTTGTAACCGACGCTTGGAACTTCATGTGTGTTTGTATTCATTCATTTATTGGATAGTCTCAGCTTTGCTACATTTACAGGTTTTGTTGATATGGATTATCCTGCCAACGGTAC
TAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGACAATCTCTGTGATTACGAAAGGAATTTTATCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGTGATCCTCGTGGAGATCATGAGAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAAT
GGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAA
GCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCAC
AACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGAC
TTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCATGCAAAACATATATATGTAATGGTTGTTGCAATTAAAATGAAGTCTTA
AAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAAAGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAAAAATTGCC
>TRINITY_DN42754_c0_g1_i8 from sample A10 / Example unspliced isoform:GTTATCTTGTATATGTTTGTTGTCTTTTTATACTTTTCAATTGCATTTTTATTATTTACATGAATTAATTATTAATTATGAGCAGGTGATTACTGAAGGAACTTTCTCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGTGATCCTCGTGGAGATCATGAGAGgtact
tgtactattctttgttgtgttgttgaacgacaaaatgttgggctttaaacctactctcatccgaatttcatagaatgttatacctgcggcaatctatctattaatattccatttactttttttctttaatgagtgttgaaaccttaaaattgacagtaatcgccaggctctcattgaagttcaggcattgacatccttag
GAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCAT
ATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATA
CTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACG
AATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCAT
GCAAAACATATATATGTAATGGTTGTTGCAATTAAAATGAAGTCTTAAAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAAAGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAAAAATTGCC
Intron 8 GTAAGAAATG ... GTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 16 | 2.3 | 4 |
| A2 | 14.29 | 24 | 1.5 | 4 |
| A3 | 16.67 | 10 | 1.5 | 2 |
| A4 | 41.67 | 7 | 0 | 5 |
| A5 | 27.27 | 8 | 1.8 | 3 |
| A6 | 11.58 | 84 | 15 | 11 |
| A7 | 24.5 | 161 | 18.8 | 52.3 |
| A8 | 25 | 225 | 33.5 | 75 |
| A9 | 21.71 | 220 | 37.5 | 61 |
| A10 | 18.75 | 104 | 18.3 | 24 |
>TRINITY_DN41136_c0_g1_i5 from sample A9 / Example spliced isoformGGGTTGTTAAAAGAAAATTAACAGATTCTAAAATTCGGTTGAAGATGGGACCTTCCTACTTAAACAGCATTGCTGCCTCATTTCCGCGTGGGAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTC
TGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGC
CCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAAATAAAACAAACCAGAGACAC
ATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGG
TACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGACAATCTCTGTGATTACGAAAGGAATTTTATCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGGTACTTGTACTATTCTTTGTTGTGTTGTTGAACGACAAAATGTT
GGGCTTTAAACCTACTCTCATCCGAATTTCATAGAATGTTATACCTGCGGCAATCTATCTATTAATATTCCATTTACTTTTTTTCTTTAATGAGTGTTGAAACCTTAAAATTGGCAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTT
ATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGAAGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGAC
ATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCCCCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATT
TGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCTTT
ACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCATGCAAAACATATATATGTAATGGTTGTTGCAATTAAAATG
AAGTCTTAAAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAAAGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAAAAATTGCC
>TRINITY_DN41136_c0_g1_i6 from sample A9 / Example unspliced isoform:GGGTTGTTAAAAGAAAATTAACAGATTCTAAAATTCGGTTGAAGATGGGACCTTCCTACTTAAACAGCATTGCTGCCTCATTTCCGCGTGGGAAGATTCCTCTACTGGAGGCCGAGGCTTTTGGAGTGCAGACGATAGCGCGTTCCAGAACGCAGAAATTCTTTTGGAAGCCTTCGTCTGCCTCAATCAATCTGTTACTC
TGCTTCAATGGATCCTCATCGCCATGTAGAGGAAGCTTCACCATCCCAACAGAGTAGTGGAAGGAAGTGCACGACAGACCCACCGAGTGGTTCTAACGTGTCAGACGCTTCTGAAAAATTAGAGGTGCCACCCTTGACTCCTTATACGAAGTTCCCGCAGGAGAGAAATCCAAGTTTGATGGTTGATTCTACTATAGCGC
CCAACAATGTATCTTCGAAGAGCTCAGAAGATATAGTCACTCCAGAAAAAACAAACTGGAGACCCATTCCACCAATGTATCTAGAAAATGTGCATGGCAACGTATCTTCTCAGAGCTCAGAAGATTTAGTCGGTTCAGAAAATTTTGTCACTCCAGAAAAAACAATTTTTGTCACTTCAAATAAAACAAACCAGAGACAC
ATTCCACCAATGTGTCCAAGTGTACCTCGAAAGCAAAAAAATTTCATTTCTTACGAGGCTACTCGTGAACTTGAAGCCCGAGAAAAACTTGGGGCTTTGAATTATCGTTTGAATCCTTTTTTTCAAAAATTGATGCAAAATTATTATGAGGATGTGCCTCAACGTCGAGGTTTTGTTGATATGGATTATCCTGCCAACGG
TACTAAAGAGGATCTGCGTTTTGAAAAAGACTTTGTGACAATCTCTGTGATTACGAAAGGAATTTTATCAACTGTGTACAAAGTTTTGAATAGAGTAGAAGGTTGCATCTATGCCATGAAAAAAGTGACCTGCGATCCTCGTGGAGATCATGAGAGGTACTTGTACTATTCTTTGTTGTGTTGTTGAACGACAAAATGTT
GGGCTTTAAACCTACTCTCATCCGAATTTCATAGAATGTTATACCTGCGGCAATCTATCTATTAATATTCCATTTACTTTTTTTCTTTAATGAGTGTTGAAACCTTAAAATTGGCAGTAATCGCCAGGCTCTCATTGAAGTTCAGGCATTGACATCCTTAGGTAAATTTAGCTTCCTCCTCCATGAGTATATGCATTCTT
ATGTTAGGCCACAACAACCTACTAGGATGCAGATTTCAATTCCTTCTAAAGATTGGAATATTTTTTTGCAGGAATCCATGATAACATAGTAAGGTATTACAATTCCTTTTATGAAAATGGCGCTATGTTCATCCAACTCGAGCTTTGTGACCACAACTTAAAATCTTTAAAGCCGGATAAAAAGATTTTTGCATCACAGA
AGACATTACTTAATATAATCTATCAGATCGCTGTGGCATTAGAATTCATTCACAAACGTGGAATCGTCCATATGAATGTGTCACCTTCGAAAATTTATCTCCAAAATGACATTTTCAAGCTTGGGGGTTTCCGTTATGCTGTAGGCAAGGATAAGTTGTGTGATATAAAAACAAAGGGGCTTGATACAAGGTATGCAGCC
CCAGAAATTTTGGATGAAAACATTGAACCCAAAGAACTCGATGTCCAACTACTTGACAGGATTGATATATACTCACTGGGTGCTACTGTGTATTCACTTGGAAGAGGATTTGAGGCACAACATGCATATACCCATTCTTTCGAACAATTAGTGAGAgtaagaaatgagtcttttagcttaagttctccctgtattcatga
aggaaataagttaagttgtgtttgctttctaattttttgttttttcagGGTATGATGCGCAACGATCCTTCCTCGAGACCCACTGCAAAAGATCTGCTAATGATTTTAGGACAAGAATTTGAAATTTATTCTGCAACGCCTATTTCCATGGTATCCCAAGACGAATTAAACCATTTTTTCAATCAATCATGAATTGGCCT
TTACAATGACTTGTTTGAAAATCTACGACAAGATCGAACTGGTAGCACGACCATTCTGTAAATTGTATCAACCCAAACTTTGAAGTGTTTATGTTTTCAATATGAAGCATTCAACGCTTTCTTATCCATTGCTATCATTATCGTGTGATGACTCCAGAACCATGCAAAACATATATATGTAATGGTTGTTGCAATTAAAA
TGAAGTCTTAAAATTTCAAAAATCAAATAATAGGACAAAATGGATTCACTTGTCAAAAGTGCATGTCAAGAGCATCTCCATTATGCCATAAAAAAAAACAAAAATTGCC