sp|Q6K8D9|SKIPA_ORYSJ ----> SNW/SKI-interacting protein A
Intron 1 GCACCAGGGT ... CAGCGCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.41 | 35 | 30 | 57 |
| A2 | 58 | 21 | 25 | 33 |
| A3 | 48.21 | 29 | 17 | 37 |
| A4 | 51.58 | 23 | 19 | 30 |
| A5 | 45.68 | 22 | 10 | 27 |
| A6 | 40.74 | 16 | 6 | 16 |
| A7 | 43.4 | 45 | 16 | 53 |
| A8 | 36.84 | 18 | 7 | 14 |
| A9 | 55.14 | 24 | 19 | 40 |
| A10 | 45.71 | 38 | 14 | 50 |
>TRINITY_DN125163_c1_g1_i1 from sample A2 / Example spliced isoformAAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGCGCATAGGC
CGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCCTTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTC
GGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCT
GG
>TRINITY_DN125163_c1_g1_i2 from sample A2 / Example unspliced isoform:AAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGCGCATAGgc
accagggtttcaattgtttatctgttcctgtgttcagcgcatagGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCC
TTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTCGGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATG
CATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCTGG
Intron 2 GTAAATTAAA ... CTGTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 30 | 2 | 75 |
| A2 | 76.62 | 18 | 0 | 59 |
| A3 | 68.24 | 27 | 0 | 58 |
| A4 | 70.24 | 25 | 0 | 59 |
| A5 | 65.08 | 22 | 0 | 41 |
| A6 | 67.35 | 16 | 0 | 33 |
| A7 | 67.33 | 33 | 1 | 68 |
| A8 | 62.86 | 13 | 0 | 22 |
| A9 | 72.5 | 22 | 0 | 58 |
| A10 | 70.25 | 36 | 1 | 85 |
>TRINITY_DN45742_c0_g3_i11 from sample A8 / Example spliced isoformGAGAGATTGGATTACTCTATGATAACTTTCAACGAGCTTGTTGGCATTCTAAAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCA
TTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGCGCATAGGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATC
CCCCCGTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTCGGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGA
GAATGCATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCTGGGCGACGAGATTGGTGGAATCCAGAAGAAGGATGAAGAGGAGGAGGACAAGGAGATAAACGAAACGACCCTGAGAACAAAGGCCGCCCTGGAAAAGATTGTGAATGTTCGGCTCAGTGCGGCGCAGCCGAAGAATGTCCCACAGCAGT
CCTCTGAAGCAACCCATATCAAATACACACCTTCACAGCAATCGGTAGCTTTTAATTCTGGTGCCAAAGAGAGAGTTATTAGGATGGTTGAGATGCCTAAGGATCCTCTTGAACCTCCCAAGTTCAAGCACAAGAGGGTCCCAAAAGCATCTGGATCCCCTCCAGTCCCGGTTATGCATTCGCCACCGAGGCCTGTGACT
GTCAAGGATCAGCAAGACTGGAAAATCCCACCTTGCATCTCCAATTGGAAGAATCCTAAGGGTTATACAATTCCGCTTGACAAACGTCTTGCGGCTGATGGAAGAGGGCTCCAGGAGGTTCAGATCAATGACAATTTTGCGAAGCTTTCGGAGGCGTTGTATGTAGCTGAACAGAAGGCCAGAGAGGCTGTGGAGATGAG
GTCAAAGATTCAGAAGGAGTTGATGCTCAAGGAGAAGGAGAAGAAAGAACAGGAATTGCGTGCTTTGGCTCAACGAGCTAGGATGGAGAGAAGTGGAGCTGGTCCAGGTGCAGGTACTGGTGCTGGTGCTGCCGGTGCCGATAAGGTTGCCAATGGAGTACCTGAAAGGGCAACAGTCACGCCCTTTGGAGGTGGCACTG
AAAGGAAGACAGAGCCTGATGATGCTGCCCCTAAGGAGAAGATAAGGGAAAATAAAGAGGAAAGAGAGGAGCGGCTTAGGCGTGAAACGCTTCGTGAGGAGAGGAGAAGAGAGAGAGAAAGGGAAAGAAGGTTGGAGGCAAAGGAAGGGCATGTTGGGAAGAAGAGCAAGATTACCAGGGACAGAGACCGTGATGTTAGT
GAGAAAATCGCACTCGGAATGGCCAATACCACTGCAGGAACAGGTGAAGTTGTCTATGATCAGAGACTCTTCAACCAGGAGAAGGGCATGGAGTCTGGATTTGCAGCTGATGACCAGTATAATATTTACGACAAAGGTTTATTTACTGCTCATAACACACTCTCTACTCTATATAGACCAAAGAAGGATGCAGATAATGA
AATGTATGGAGGGGCAGATGAACAGCTTGACAAGGTGCTTAAGACTGACCGTTTCAGAGCCGATAAAGGTTTTGCTGGCGCCACTGAAAGGGGTGGACCTAGGGATAGGCCAGTTGAGTTTGAAAAGGATGCAGAAGAAGCTGACCCGTTTGGTTTGGATCAGTTCTTGACGGAGGTGAAGAAAGGGAAGAAAGCAATGG
ACAAGATTGGAGGTGGAGGAACCATGAAGGCAAGTGCTGGATCTGCAATGAAGGAAAGTTACGAGGGAGGTTCTAGTAGGACTCGTGTTGACTTTGAGAGAGGGCGCTGAATTTGGCTATTGCTAAAAAAGTGGGACATACTACTCTTGTGAAAGGTTGGTCGTTGTTACCAATATTGCCTCAACAGAAATTTCATTTGG
GCTATTTTATACTTGATATGTAGAACAACCAAAGAATAAGTTCTTTTGTATTTTGGTTACTGATATGTCTTTGTCGCCACAACTCTTTCAAGTTACATGGATACATACTTAGCCATGAATTCCCGGGCAAATGTAGTATTCCCAACTAGGCTTGACTGAGTTTTTGAGTTGAGAGTCGTGGTATTTGTGACTTGGACTTT
TGTCAAACACTTTGTAACACTGTTTAGTATCTCTGTATAATTCTCTGCCTGCTAGCAATCTGAGTTTTAGTGGGCTGTTGTTGCGTTTTGGAACTAGGAATTTCGTCAAACACTTGTCAATAACGCTACTGAACTAGTTCAACGATCACTGCTGGTTGTTGTACTCTTAAGTACTGTAGATATATGTGCTATACAATTTG
TATTTTTGACTGTAAGTTTCAGATATTGGTTTATAGCCCTCAACAGTGAACATTAAATACAAATGAAGAGCACGTTTGCATTAATGGCAAGGACAATATACTCAAAATCTTATATGCA
>TRINITY_DN45742_c0_g3_i3 from sample A8 / Example unspliced isoform:CGCGTCGATTCTTCATTTCACGGgtaaattaaaaaaacccctgaagttattttgtctgtacaaccgccagggtttcaattttaaaaccttgttggacgagggttttgtaaaacaaaaataaaaccctcgattattttctctgtacaagcgccagggtttcaattttaacccttgttgcaccagggtttcaattgtttatc
tgttcctgtgttcagCGCATAGGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCCGTACGGCAAGAGGGCGGGCTTC
GTCCCTCGCAAGATCGAAGACTTCGGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGTTGTGTATTCTCA
ACATAAGGATCTCGTGCCCAAGCTGGGCGACGAGATTGGTGGAATCCAGAAGAAGGATGAAGAGGAGGAGGACAAGGAGATAAACGAAACGACCCTGAGAACAAAGGCCGCCCTGGAAAAGATTGTGAATGTTCGGCTCAGTGCGGCGCAGCCGAAGAATGTCCCACAGCAGTCCTCTGAAGCAACCCATATCAAATACA
CACCTTCACAGCAATCGGTAGCTTTTAATTCTGGTGCCAAAGAGAGAGTTATTAGGATGGTTGAGATGCCTAAGGATCCTCTTGAACCTCCCAAGTTCAAGCACAAGAGGGTCCCAAAAGCATCTGGATCCCCTCCAGTCCCGGTTATGCATTCGCCACCGAGGCCTGTGACTGTCAAGGATCAGCAAGACTGGAAAATC
CCACCTTGCATCTCCAATTGGAAGAATCCTAAGGGTTATACAATTCCGCTTGACAAACGTCTTGCGGCTGATGGAAGAGGGCTCCAGGAGGTTCAGATCAATGACAATTTTGCGAAGCTTTCGGAGGCGTTGTATGTAGCTGAACAGAAGGCCAGAGAGGCTGTGGAGATGAGGTCAAAGATTCAGAAGGAGTTGATGCT
CAAGGAGAAGGAGAAGAAAGAACAGGAATTGCGTGCTTTGGCTCAACGAGCTAGGATGGAGAGAAGTGGAGCTGGTCCAGGTGCAGGTACTGGTGCTGGTGCTGCCGGTGCCGATAAGGTTGCCAATGGAGTACCTGAAAGGGCAACAGTCACGCCCTTTGGAGGTGGCACTGAAAGGAAGACAGAGCCTGATGATGCTG
CCCCTAAGGAGAAGATAAGGGAAAATAAAGAGGAAAGAGAGGAGCGGCTTAGGCGTGAAACGCTTCGTGAGGAGAGGAGAAGAGAGAGAGAAAGGGAAAGAAGGTTGGAGGCAAAGGAAGGGCATGTTGGGAAGAAGAGCAAGATTACCAGGGACAGAGACCGTGATGTTAGTGAGAAAATCGCACTCGGAATGGCCAAT
ACCACTGCAGGAACAGGTGAAGTTGTCTATGATCAGAGACTCTTCAACCAGGAGAAGGGCATGGAGTCTGGATTTGCAGCTGATGACCAGTATAATATTTACGACAAAGGTTTATTTACTGCTCATAACACACTCTCTACTCTATATAGACCAAAGAAGGATGCAGATAATGAAATGTATGGAGGGGCAGATGAACAGCT
TGACAAGGTGCTTAAGACTGACCGTTTCAGAGCCGATAAAGGTTTTGCTGGCGCCACTGAAAGGGGTGGACCTAGGGATAGGCCAGTTGAGTTTGAAAAGGATGCAGAAGAAGCTGACCCGTTTGGTTTGGATCAGTTCTTGACGGAGGTGAAGAAAGGGAAGAAAGCAATGGACAAGATTGGAGGTGGAGGAACCATGA
AGGCAAGTGCTGGATCTGCAATGAAGGAAAGTTACGAGGGAGGTTCTAGTAGGACTCGTGTTGACTTTGAGAGAGGGCGCTGAATTTGGCTATTGCTAAAAAAGTGGGACATACTACTCTTGTGAAAGATGACTCGTCAGTTACCCTTGAGAGGCAAACCAAAAGACGAGAAGCTTGAATTAAATAAGCTTTCCCTCT
Intron 3 GTGATATTGG ... AGAGACTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 4 | 14 | 0 |
| A2 | 100 | 0 | 18 | 0 |
| A3 | 88.89 | 3 | 24 | 2 |
| A4 | 84.62 | 2 | 11 | 3 |
| A5 | 100 | 0 | 5 | 1 |
| A6 | 97.47 | 2 | 77 | 8 |
| A7 | 94.51 | 5 | 86 | 12 |
| A8 | 97.78 | 2 | 88 | 4 |
| A9 | 98.44 | 1 | 63 | 4 |
| A10 | 100 | 0 | 37 | 0 |
>TRINITY_DN48216_c0_g1_i5 from sample A7 / Example spliced isoformTGAAGGAGGTTCTAGTAGGACTCGTGTTGACTTTGAAAGAGGACGCTGAATTTGTCTATTGCTAAAAACTGGGACATAAATATCTTGTGAGAGGTGACTTGGTTTAAAAGTTTTCACTGGCGGGACCTCACGACCAGTGTTGTTCATTGATATTCTCTTTTGATGTGCAGCACATCACAAGACTGCACAAAATTTATCTT
GCAGTATTGCTTTGGAAGTAGCAACTATTTCAAGGTCATAAAGCTAGATAATAATACTATTCAATGCAATCTACGTCTTATATGGC
>TRINITY_DN48216_c0_g1_i4 from sample A7 / Example unspliced isoform:CTTAGATTTGAATAATACTATTTAAGAAAGGAGAGATTGGATTACTCTATGATAACTTTCAACGAGCTTGTTGGCATTCTAAAAAAATAAAAAACTTTCAACTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCG
TGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGGTAAAACAAAAATAAAACCCTCGATTATTTTCTCTGTACAAGCGCCAGGGTTTCAATTTTAACCCTTGTTGCACCAGGGTTTCAATTGTTTATCTGTTCCTGTGTTCAGCGCATAGGCACCAGGGTTT
CAATTGTTTATCTGTTCCTGTGTTCAGCGCATAGGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAATTCGGTTGTAAAGGCTAAGCAAATTCCCCCTTACGGCAAG
CGGGCGGGCTTCGTCCCTCGCAAGATCGAGGACTTTGGCGATGGGGGTGCCTTCCCAGAGATTCATATTGCCCAATACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGT
TGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCTGGCCGACGAGGTTGGTGGAATCCAGAAGATGGATGAAGAGGAGGAGGACAAGGAGATAAACGAAACGACCCTGAGAACAAAGGCCGCCCTGGAAAAGATTGTGAATGTTCGGCTCAGTGCGGCGCAGCCGAAGAATGTCCCACAGCAGTCCTCTGAAGCAACCC
ATATCAAATACACACCTTCACAGCAATCGGTAGCTTTTAATTCCGGTGCCAAAGAGAGGGTTATTAGGATGGTTGAGATGCCTAAGGATCCTCTCGAGCCTCCCAAGTTCAAGCACAAGAGGGTCCCAAAAGCATCCGGATCCCCTCCGGTTCCGGTTATGCATTCGCCACCGAGGCCTGTGACTGTCAAGGATCAGCAA
GACTGGAAAATCCCACCTTGCATCTCCAATTGGAAGAATCCTAAGGGTTATACAATTCCACTTGACAAACGTCTCGCAGCTGATGGAAGAGGGCTCCAGGAGGTTCAGATCAATGACAACTTTGCAAAGCTTTCGGAGGCGTTGTATGTAGCTGAACAGAAGGCCAGAGAGGCTGTGGAGATGAGGTCAAAGATTCAGAA
GGAGTTGATGCTCAAGGAGAAGGAGAAGAAAGAACAGGAATTGCGTGCTCTGGCTCAGCGAGCTAGGATGGAGAGAAGTGGAGCTGGTCCAGGTGCAGGTACTGGAGCTGGTGCTGTCGGGGCTGATAAGGTCACCAGTGGAGTACCTGAAAGGGCAACTGTCACGCCCTTTGGAGGTGGCAGTGAAAGGAAGACAGAGC
CTGATCGTGCTGTCCCTAAGGAGAATATAAGGGAAAATAAAGAGGAAAGAGAGGAGCGGCTTAAGCGTGAAACGCTTCGCGACGAAAGGAGAAGAGAGAGAGAAAGGGAAAGAAGGTTGGAGGCAAAGGAAGGGCATGTTGGGAAGAAGAGCAAGATTACCAGGGACAGAGACCGTGATGTTAGTGAGAAAATCGCACTC
GGAATGGCCAATACCACTGCAGGAACAGGTGAAGTTGTCTATGATCAGAGACTCTTCAACCAGGAGAAGGGAATGGAGTCTGGATTTGCAGCTGATGACCAGTATAATATTTATGACAAGGGTTTATTTACTGCTCATAACACACTATCCACTCTTTATAGACCAAAGAAGGATGCAGATAATGAAATGTATGGAGGGGC
AGATGAACAGCTTGACAAGGTGCTTAAGACTGACCGTTTCAGAGCTGACAAAGGATTTGCTGGTGCTACTGAAAGAGGTGGACCTAGGGACAGGCCAGTTGAGTTTGAAAAGGATGCAGAAGAAGCTGATCCGTTTGGTTTGGATCAGTTCTTGACGGAGGTGAAGAAAGGGAAGAAAGCAATGGACAAGATTGGAGGTG
GAGGAACCATGAAGGCAAGTGCTGGATCTGCAATGAAGGAAAGTTATGAAGGAGGTTCTAGTAGGACTCGTGTTGACTTTGAAAGAGGACGCTGAATTTGTCTATTGCTAAAAACTGGGACATAAATATCTTGTGAGAGgtgatattgggcagctcatgaccctttttgcaataaatcttggactcttgtgccctgccac
atgtcccagagactaagGTGACTTGGTTTAAAAGTTTTCACTGGCGGGACCTCACGACCAGTGTTGTTCATTGATATTCTCTTTTGATGTGCAGCACATCACAAGACTGCACAAAATTTATCTTGCAGTATTGCTTTGGAAGTAGCAACTATTTCAAGGTCATAAAGCTAGATAATAATACTATTCAATGCAATCTACGT
CTTATATGGC
Intron 4 GTAAATTAAA ... CTGTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.78 | 29.3 | 47.1 | 76.1 |
| A2 | 75.06 | 16.8 | 47.8 | 53.3 |
| A3 | 73.69 | 26.6 | 82.3 | 66.5 |
| A4 | 70.51 | 23.8 | 42.7 | 70.7 |
| A5 | 63.33 | 22 | 29 | 47 |
| A6 | 68.71 | 15.5 | 27 | 41 |
| A7 | 67.09 | 32.5 | 50.1 | 82.4 |
| A8 | 63.03 | 11.8 | 16.8 | 22.8 |
| A9 | 69.28 | 22 | 42.7 | 56.7 |
| A10 | 66.43 | 35 | 55.3 | 83.2 |
>TRINITY_DN125163_c1_g1_i1 from sample A2 / Example spliced isoformAAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGCGCATAGGC
CGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCCTTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTC
GGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCT
GG
>TRINITY_DN125163_c1_g1_i5 from sample A2 / Example unspliced isoform:AAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGgtaaactaa
aaaaaaccctgaagttattttgtctgtacaaccgccagggtttcaattttaaaaccttgttggacgagggttttaattgtttatctgttcctgtgttcagCGCATAGGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATG
GTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCCTTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTCGGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTAC
CCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCTGGGCGACGAGATTGGTGGAATCCAGAAGAAGGATGAAGAGGAGGAGGACAAGGAGATAAACGAAACGACCCTGAGAACAAAGGCCGCCCTG
GAAAAGATTGTGAATGTTCGGCTCAGTGCGGCGCAGCCGAAGAATGTCCCACAGCAGTCCTCTGAAGCAACCCATATCAAATACACACCTTCACAGCAATCGGTAGCTTTTAATTCTGGTGCCAAAGAGAGAGTTATTAGGATGGTTGAGATGCCTAAGGATCCTCTTGAACCTCCCAAGTTCAAGCACAAGAGGGTCCC
AAAAGCATCTGGATCCCCTCCAGTCCCGGTTATGCATTCGCCACCGAGGCCTGTGACTGTCAAGGATCAGCAAGACTGGAAAATACCACCTTGCATCTCCAATTGGAAGAATCCTAAGGGTTATACAATTCCGCTTGACAAACGTCTTGCGGCTGATGGAAGAGGGCTCCAGGAGGTTCAGATCAATGATAATTTTGCGA
AGCTTTCGGAGGCGTTGTATGTAGCTGAACAGAAGGCCAGAGAGGCTGTGGAGATGAGGTCAAAGATTCAGAAGGAGTTGATGCTCAAGGAGAAGGAGAAGAAAGAACAGGAATTGCGTGCTTTGGCTCAACGAGCTAGGATGGAGAGAAGTGGAGCTGGTCCAGGTGCAGGTACTGGTGCTGGTGCTGCCGGTGCCGAT
AAGGTCGCCAATGGAGTACCTGAAAGGGCAACAGTCACGCCCTTTGGAGGTGGCACTGAAAGGAAGACAGAGCCTGATGATGCTGCCCCCAAGGAGAAGATAAGGGAAAATAAAGAGGAAAGAGAGGAGCGGCTTAGGCGTGAAACGCTTCGTGAGGAGAGGAGAAGAGAGAGAGAAAGGGAAAGAAGGTTGGAGGCAAA
GGAAGGGCATGTTGGGAAGAAGAGCAAGATTACCAGGGACAGAGACCGTGATGTCAGTGAGAAAATCGCACTCGGAATGGCCAATACCACTGCAGGAACAGGTGAAGTTGTCTATGATCAGAGACTCTTCAACCAGGAGAAGGGCATGGAGTCTGGATTTGCAGCTGATGACCAGTATAATATTTACGACAAAGGTTTAT
TTACTGCTCATAACACACTCTCTACTCTATATAGACCAAAGAAGGATGCAGATAATGAAATGTATGGAGGGGCAGATGAACAGCTTGACAAGGTGCTTAAGACTGACCGTTTCAGAGCCGATAAAGGTTTTGCTGGCGCCACTGAAAGGGGTGGACCTAGGGATAGGCCAGTTGAGTTTGAAAAGGATGCAGAAGAAGCT
GACCCGTTTGGTTTGGATCAGTTCTTGACGGAGGTGAAGAAAGGGAAGAAAGCAATGGACAAGATTGGAGGTGGAGGAACCATGAAGGCAAGTGCTGGATCTGCAATGAAGGAAAGTTACGAGGGAGGTTCTAGTAGGACTCGTGTTGACTTTGAGAGAGGGCGCTGAATTTGGCTATTGCTAAAAAAGTGGGACATACT
ATTCTTGTGAAAGGTTGGTCGTTGTTACCAATATTGCCTCAACAGAAATTTCATTTGGGCTATTTTATACTTGATATGTAGAACAACCAAAGAATAAGTTCTTTTGTATTTTGGTTACTGATATGTCTTTGTCGCCACAACTCTTTCAAGTTACATGGATACATACTTAGCCATGAATTCCCGGGCAAATGTAGTATTCC
CAACTAGGCTTGACTGAGTTTTTGAGTTGAGAGTCGTGGTATTTGTGAATTGGACTTTTGTCAAACACTTTGTAACACTGTTTATTATCTCTGTATAATTCTCTGCCTGCTAGCAATCTGAGTTTTAGTGGGCTGTTGTTGCGTTTTGGAACTAGGAATTTCGTCAAACACTTGTCAATAACGCTACTGAACTAGTTCAA
CGATCACTGCTGGTTGTTGTACTCTTAAGTACTGTAGATATATGTGCTATACAATTTGTATTTTTGACTGTAAGTTTCAGATATTGGTTTATAGCCCTCAACAGTGAACATTAAATACAAATGAAGAGCACGTTTGCATTAATGGCAAGGACAATATACTCAAAATCTTATATGCATTTAACAGAGTTTATAATGACTGT
AACAGCAGTTTTTAAGCAAATAAACAAGTTTGAAATATCTTCCAACAATGCATGGAGATTAAC
Intron 5 GTAAAACAAA ... CTGTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 27 | 46 | 53 |
| A2 | 64.79 | 25 | 48 | 44 |
| A3 | 79.87 | 15 | 78 | 41 |
| A4 | 64.34 | 23 | 39 | 44 |
| A5 | 73.77 | 8 | 21 | 24 |
| A6 | 75 | 6 | 18 | 18 |
| A7 | 76.99 | 13 | 49 | 38 |
| A8 | 70.73 | 6 | 15 | 14 |
| A9 | 75.24 | 13 | 39 | 40 |
| A10 | 81.97 | 11 | 54 | 46 |
>TRINITY_DN125163_c1_g1_i2 from sample A2 / Example spliced isoformAAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGCGCATAGGC
ACCAGGGTTTCAATTGTTTATCTGTTCCTGTGTTCAGCGCATAGGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCC
TTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTCGGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATG
CATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCTGG
>TRINITY_DN125163_c1_g1_i4 from sample A2 / Example unspliced isoform:AAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGgtaaaacaa
aaataaaaccctcgattattttctctgtacaagcgccagggtttcaattttaacccttgttgcaccagggtttcaattgtttatctgttcctgtgttcagCGCATAGGCACCAGGGTTTCAATTGTTTATCTGTTCCTGTGTTCAGCGCATAGGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTC
CCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCCTTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTCGGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCT
CTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCTGG
Intron 6 GTAAAACAAA ... CTGTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.18 | 29.4 | 46 | 64 |
| A2 | 71.12 | 16.6 | 48 | 33 |
| A3 | 70.41 | 26.3 | 78 | 47 |
| A4 | 60.95 | 24.1 | 39 | 36 |
| A5 | 55.56 | 22 | 21 | 34 |
| A6 | 54.28 | 15.6 | 18 | 19 |
| A7 | 59.17 | 32.8 | 49 | 46 |
| A8 | 52.58 | 11.9 | 15 | 11 |
| A9 | 66.41 | 22 | 39 | 48 |
| A10 | 61.35 | 35 | 54 | 57 |
>TRINITY_DN125163_c1_g1_i1 from sample A2 / Example spliced isoformAAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGCGCATAGGC
CGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTCCCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCCTTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTC
GGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCTCTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCT
GG
>TRINITY_DN125163_c1_g1_i4 from sample A2 / Example unspliced isoform:AAAAAATAAAAAACTTTCAATTGGCTTGACATACAAATTCAGATTGGAATCAGCATAGTACTATATAATTATTTGGACCGGCCAACATAAAAGGTTTCAGTTTTTGGGTCAGGGTTTCGTGCTTCTCTCCTGCAGAGCTTCGGAAGGCATTTGAACTTATTCAAGCGGCGCGTCGATTCTTCATTTCACGGgtaaaacaa
aaataaaaccctcgattattttctctgtacaagcgccagggtttcaattttaacccttgttgcaccagggtttcaattgtttatctgttcctgtgttcagcgcataggcaccagggtttcaattgtttatctgttcctgtgttcagCGCATAGGCCGTCTTCGAAGATGGCAGGATCACTGCTTGGGAGCCTTCCAGCTC
CCAAGTTAAACAGCGGGGCACAATATGATTTTTCTTCGGATCCATGGTTTAAGGAGCGGGTAGATCAATCCAAGCCCAGTTCGGTTGTAAAAGCCAAGCAAATCCCCCCTTACGGCAAGAGGGCGGGCTTCGTCCCTCGCAAGATCGAAGACTTCGGCGATGGGGGCGCCTTTCCAGAAATTCATATTGCCCAGTACCCT
CTGGACATGGGGCGCAAGGAAGAAAGGAAAGACACCAAGATTTTACCCGTCAGCGTCGATGCTCAGGGCAATATTGCCTTCGACGCTATTGTTAAGCAGAATGAGAATGCATCCAAGGTTGTGTATTCTCAACATAAGGATCTCGTGCCCAAGCTGG