sp|O65220|CPY28_ARATH ----> Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic
Intron 1 GTAAATTTTG ... CTGATTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.64 | 10 | 17 | 18 |
| A2 | 60 | 1 | 1 | 2 |
| A3 | 47.83 | 6 | 5 | 6 |
| A4 | 46.67 | 4 | 6 | 1 |
| A5 | 42.86 | 2 | 2 | 1 |
| A6 | 51.9 | 38 | 48 | 34 |
| A7 | 47.37 | 15 | 12 | 15 |
| A8 | 70.79 | 13 | 23 | 40 |
| A9 | 71.43 | 11 | 31 | 24 |
| A10 | 50 | 17 | 26 | 8 |
>TRINITY_DN38605_c0_g1_i4 from sample A6 / Example spliced isoformAACGCTCTAAGTTTGATTACAGATTTCACAGAGGCATAAGCGGAAGAATCCAGATTTCAAGATCAGACAGAAATGCAAAGTCTGTACAATAACATCCTTCCACATTCTGCGTGGATTTTCTCAAAATTCTAATTCTCTGAAAATTCCTTCATAGCAATGGATTTAGCCACACGATTGCCATTCTCGCCCTCCGCACGCCT
GCCTCCGATTCCGCGCATCTCAGCACGCAAGTTCAAAATCATATCGTCCCACGTTCGAATCCCCGCGGAGTCCGCGTGCCCTGCTCTAGCCGTCTGTGGGCGCAGAGAGCTCGTAATCCTCACAGCCCTCGCAGCAGCCCCCGCCAGAGCTGAGGAGGAGGTAGAGGTGGAGGAGGAAAAGGTCAAGAGCGCGGACACGA
CCATCACAGACCGCGTCTTCCTGGATATCGCCACATGCCCCACTGCTCTCAGGCCGGAGCGGAGCTCCGCCGCCGCCGAGGAGGAGGAACGCCCGGCGCCAGTGTGCGCGGAGGCGGAGCCCCTCGGTCGTATCGTCATAGGACTCTACGGGAAGCAGGTTCCCCGCACAGTAGCGAATTTCAAGGCCATGTGCACGGGG
GCGGCGGGGGCGGCGTACGAGGGGACCCTCATACACAAGATTTTGCCGGGGCAGTACTTAGTGGCGGGGAAGCAGGGGAGGAAGGAGAAAGGTGAGGTTCCGCCCCCTCCCAATCTGGAGAGGAATTTGGAGACCGTGGAACCGGGGGCTTTCAGGCTGCGCCACGCTAAGCCTGGGACCGTCTCCCTGTGTTTGTCTGA
GAATGACGACGAAGATCAGTACAGGCTTAGCCCTGATTACAGAAATGTCGAGTTCCTGATTACGACGGGGCCGGGACCTTGCCCTCAGCTCGATAACAAGAACATTGTCTTCGGCACTGTAGTTGAAGGAATGGATGTTGTGACTGCTATAGCAGCTGTTCCTACCTATAAGCCTGCGGAGCGCATTCGACAGTTCAATG
ATTTTGCGGAATTTATAGGGGATGAGAGAGCCCAAAATGCCCGTAATTTATGGAATCGGCCTATAAAAAGTCTTTTTATAAGTTCCTGTGGGGAACTGAGAGTTGGAAAGCCTTCTCTTGCTCCCATTGCTCCCAGTTTACCATAACTGTTAAAGGGGTGAAATCTGGAATGTTAGAAACAGGCCTTTTGCCAGATCTAG
TTAAAGGTTTGAAATCTCTCAACTGTGAAGACATCTGGTGTCCCAGAATGTGACGATACCCAACAGCCCCTCAAAGGAACTGGAGCCTGAGTACTTTGGTGAGATCACCTCCAGTTCTCCACTTGGTTGATTTCTTGGATTCAAGAGATTCTTGGTTGCAAAAAGCACTCGAGAGCATCCTGAGATGAATGTACCGTCTC
ACCATTAAAGCAATAATAGGATCTGTGGATGCTAAATCTTGGGGACAAATTATCTGTTATTAGTGTCAACCTCAAAATGCACTACCTTGCATCTTTTTTTATTGCCCAATATAAAGACTGTCATCAGTTGGTCCATATGTACCTGCATCTCTCACGAACATCAACATTGAAGACTAAGCATTCATTCTAAAGACTCGAGA
GGATATGAATTTCACGCCTTCAGTGCTACTGACTTCAACAAATTAATATCTTGTCTATAAATATTTTTTCAAGTCATGCATTTTAAACACTTAATGAAATGCTTTTGCTCATAATGTCCTGGTTAATAAGGAAAAAGAAGATTTCGGGTTCCAAGGAATATAACATGCATATGCATGAATATGCTCACGAAAAGTAAGAG
GAGAATGGATTATTTTGTGAAGGTATTATTTTGCGTGTCTAGCTTCTTATCTCACAAAATGGGGAATGCCTTGTTAGTGTTAGGAATCCCTGGCCACTGTTAAGTAAAAAGGGTTAAGATTGGTTTAATTCCTGACAATTATAATGACACGCAAGAGGCAAGATTGGTTTATCACAACATGCAAATGAATGCACGATATA
CTAACATTTCTGGGATATTTAATAAACTGAATATATCTTTATGTTTTCATGTTTGTGCAGTTACTTCTTTGGTTTCCCTCCCTCCATATCAAAGGAGGGAATTTATCCACTCACTAATTTCGGTTCACATTCTTGGAGACCCCTTATGTCTTTTCCATTGTCAATGAATTTAGCAGGCCCATTTACTGCTTTTGTAGGTG
GAGATCTATATAGTTTCTGTTTTCTAA
>TRINITY_DN38605_c0_g1_i6 from sample A6 / Example unspliced isoform:AACGCTCTAAGTTTGATTACAGATTTCACAGAGGCATAAGCGGAAGAATCCAGATTTCAAGATCAGACAGAAATGCAAAGTCTGTACAATAACATCCTTCCACATTCTGCGTGGATTTTCTCAAAATTCTAATTCTCTGAAAATTCCTTCATAGCAATGGATTTAGCCACACGATTGCCATTCTCGCCCTCCGCACGCCT
GCCTCCGATTCCGCGCATCTCAGCACGCAAGTTCAAAATCATATCGTCCCACGTTCGAATCCCCGCGGAGTCCGCGTGCCCTGCTCTAGCCGTCTGTGGGCGCAGAGAGCTCGTAATCCTCACAGCCCTCGCAGCAGCCCCCGCCAGAGCTGAGGAGGAGGTAGAGGTGGAGGAGGAAAAGGTCAAGAGCGCGGACACGA
CCATCACAGACCGCGTCTTCCTGGATATCGCCACATGCCCCACTGCTCTCAGGCCGGAGCGGAGCTCCGCCGCCGCCGAGGAGGAGGAACGCCCGGCGCCAGTGTGCGCGGAGGCGGAGCCCCTCGGTCGTATCGTCATAGGACTCTACGGGAAGCAGGTTCCCCGCACAGTAGCGAATTTCAAGGCCATGTGCACGGGG
GCGGCGGGGGCGGCGTACGAGGGGACCCTCATACACAAGATTTTGCCGGGGCAGTACTTAGTGGCGGGGAAGCAGGGGAGGAAGGAGAAAGGTGAGGTTCCGCCCCCTCCCAATCTGGAGAGGAATTTGGAGACCGTGGAACCGGGGGCTTTCAGGCTGCGCCACGCTAAGCCTGGGACCGTCTCCCTGTGTTTGTCTGA
GAATGACGACGAAGATCAGTACAGGCTTAGCCCTGATTACAGAAATGTCGAGTTCCTGATTACGACGGGGCCGGGACCTTGCCCTCAGCTCGATAACAAGAACATTGTCTTCGGCACTGTAGTTGAAGGAATGGATGTTGTGACTGCTATAGCAGCTGTTCCTACCTATAAGCCTGCGGAGCGCATTCGACAGTTCAATG
ATTTTGCGGAATTTATAGGGGATGAGAGAGCCCAAAATGCCCGTAATTTATGGAATCGGCCTATAAAAAGTCTTTTTATAAGTTCCTGTGGGGAACTGAGAGTTGGAAAGCCTTCTCTTGCTCCCATTGCTCCCAGTTTACCATAACTGTTAAAGGGGTGAAATCTGGAATGTTAGAAACAGGCCTTTTGCCAGATCTAG
TTAAAGGTTTGAAATCTCTCAACTGTGAAGACATCTGGTGTCCCAGAATGTGACGATACCCAACAGCCCCTCAAAGGAACTGGAGCCTGAGTACTTTGGTGAGATCACCTCCAGTTCTCCACTTGgtaaattttgccaatacgtttgtctacctgttaacagccaatgcattttctgtatgttgtcttggtattttcata
taacttatcctctgtttctcacgattatgtttgtattgcttttactctattcagttatttgcacctcgagattttttatggtggttttttttctgggagagaaagtcaagcaatgtgagatattatgccttattctgattccagGTTGATTTCTTGGATTCAAGAGATTCTTGGTTGCAAAAAGCACTCGAGAGCATCCT
GAGATGAATGTACCGTCTCACCATTAAAGCAATAATAGGATCTGTGGATGCTAAATCTTGGGGACAAATTATCTGTTATTAGTGTCAACCTCAAAATGCACTACCTTGCATCTTTTTTTATTGCCCAATATAAAGACTGTCATCAGTTGGTCCATATGTACCTGCATCTCTCACGAACATCAACATTGAAGACTAAGCAT
TCATTCTAAAGACTCGAGAGGATATGAATTTCACGCCTTCAGTGCTACTGACTTCAACAAATTAATATCTTGTCTATAAATATTTTTTCAAGTCATGCATTTTAAACACTTAATGAAATGCTTTTGCTCATAATGTCCTGGTTAATAAGGAAAAAGAAGATTTCGGGTTCCAAGGAATATAACATGCATATGCATGAATA
TGCTCACGAAAAGTAAGAGGAGAATGGATTATTTTGTGAAGGTATTATTTTGCGTGTCTAGCTTCTTATCTCACAAAATGGGGAATGCCTTGTTAGTGTTAGGAATCCCTGGCCACTGTTAAGTAAAAAGGGTTAAGATTGGTTTAATTCCTGACAATTATAATGACACGCAAGAGGCAAGATTGGTTTATCACAACATG
CAAATGAATGCACGATATACTAACATTTCTGGGATATTTAATAAACTGAATATATCTTTATGTTTTCATGTTTGTGCAGTTACTTCTTTGGTTTCCCTCCCTCCATATCAAAGGAGGGAATTTATCCACTCACTAATTTCGGTTCACATTCTTGGAGACCCCTTATGTCTTTTCCATTGTCAATGAATTTAGCAGGCCCA
TTTACTGCTTTTGTAGGTGGAGATCTATATAGTTTCTGTTTTCTAA
Intron 2 GTAAATTTTG ... CTCTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.41 | 2.6 | 17 | 13 |
| A2 | 56.36 | 2.4 | 1 | 4 |
| A3 | 55.28 | 5.4 | 5 | 8 |
| A4 | 70.91 | 1.6 | 6 | 1 |
| A5 | 38.66 | 2.6 | 2 | 1 |
| A6 | 62.48 | 24.8 | 48 | 30 |
| A7 | 60.35 | 6.6 | 12 | 6 |
| A8 | 63.94 | 14.4 | 23 | 27 |
| A9 | 61.11 | 17.2 | 31 | 22 |
| A10 | 59.5 | 12.6 | 26 | 8 |
>TRINITY_DN102417_c0_g1_i1 from sample A3 / Example spliced isoformACCTCCAGTTCTCCACTTGTTATTTGCACCTCGAGATTTTTTATGGTGGTTTTTTTTCTGGGAGAGAAAGTCAAGCAATGTGAGATATTATGCCTTATTCTGATTCCAGGTTGATTTCTTGGATTCAAGAGATTCTTGGTTGCAAAAAGCACTCGAGAGCATCCTGAGATGAATGTACCGTCTCACCATTAAAGCAATAA
TAGGATCTGTGGATGCTAAATCTTGGGGACAAATTATCTGTTATTAGTGTCAACCTCAAAATGCACTACCTTGCATCTTTTTTTATTGCCCAATATAAAGACTGTCATCAGTTGGTCCATATGTACCTGCATCTCTCACGAACATCAACATTGAAGACTAAGCATTCATTCTAAAGACTCGAG
>TRINITY_DN102417_c0_g1_i2 from sample A3 / Example unspliced isoform:AGATTTCAAGATCAGACAGAAATGCAAAGTCTGTACAATAACATCCTTCCACATTCTGCGTGGATTTTCTCAAAATTCTAATTCTCTGAAAATTCCTTCATAGCAATGGATTTAGCCACACGATTGCCATTCTCGCCCTCCGCACGCCTGCCTCCGATTCCGCGCATCTCAGCACGCAAGTTCAAAATCATATCGTCCCA
CGTTCGAATCCCCGCGGAGTCCGCGTGCCCTGCTCTAGCCGTCTGTGGGCGCAGAGAGCTCGTAATCCTCACAGCCCTCGCAGCAGCCCCCGCCAGAGCTGAGGAGGAGGTAGAGGTGGAGGAGGAAAAGGTCAAGAGCGCGGACACGACCATCACAGACCGCGTCTTCCTGGATATCGCCACATGCCCCACTGCTCTCA
GGCCGGAGCGGAGCTCCGCCGCCGCCGAGGAGGAGGAACGCCCGGCGCCAGTGTGCGCGGAGGCGGAGCCCCTCGGTCGTATCGTCATAGGACTCTACGGGAAGCAGGTTCCCCGCACAGTAGCGAATTTCAAGGCCATGTGCACGGGGGCGGCGGGGGCGGCGTACGAGGGGACCCTCATACACAAGATTTTGCCGGGG
CAGTACTTAGTGGCGGGGAAGCAGGGGAGGAAGGAGAAAGGTGAGGTTCCGCCCCCTCCCAATCTGGAGAGGAATTTGGAGACCGTGGAACCGGGGGCTTTCAGGCTGCGCCACGCTAAGCCTGGGACCGTCTCCCTGTGTTTGTCTGAGAATGACGACGAAGATCAGTACAGGCTTAGCCCTGATTACAGAAATGTCGA
GTTCCTGATTACGACGGGGCCGGGACCTTGCCCTCAGCTCGATAACAAGAACATTGTCTTCGGCACTGTAGTTGAAGGAATGGATGTTGTGACTGCTATAGCAGCTGTTCCTACCTATAAGCCTGCGGAGCGCATTCGACAGTTCAATGATTTTGCGGAATTTATAGGGGATGAGAGAGCCCAAAATGCCCGTAATTTAT
GGAATCGGCCTATAAAAAGTCTTTTTATAAGTTCCTGTGGGGAACTGAGAGTTGGAAAGCCTTCTCTTGCTCCCATTGCTCCCAGTTTACCATAACTGTTAAAGGGGTGAAATCTGGAATGTTAGAAACAGGCCTTTTGCCAGATCTAGTTAAAGGTTTGAAATCTCTCAACTGTGAAGACATCTGGTGTCCCAGAATGT
GACGATACCCAACAGCCCCTCAAAGGAACTGGAGCCTGAGTACTTTGGTGAGATCACCTCCAGTTCTCCACTTGgtaaattttgccaatacgtttgtctacctgttaacagccaatgcattttctgtatgttgtcttggtattttcatataacttatcctctgtttctcacgattatgtttgtattgcttttactctatt
cagTTATTTGCACCTCGAGATTTTTTATGGTGGTTTTTTTTCTGGGAGAGAAAGTCAAGCAATGTGAGATATTATGCCTTATTCTGATTCCAGGTTGATTTCTTGGATTCAAGAGATTCTTGGTTGCAAAAAGCACTCGAGAGCATCCTGAGATGAATGTACCGTCTCACCATTAAAGCAATAATAGGATCTGTGGATGC
TAAATCTTGGGGACAAATTATCTGTTATTAGTGTCAACCTCAAAATGCACTACCTTGCATCTTTTTTTATTGCCCAATATAAAGACTGTCATCAGTTGGTCCATATGTACCTGCATCTCTCACGAACATCAACATTGAAGACTAAGCATTCATTCTAAAGACTCGAG