sp|O80852|GSTF9_ARATH ----> Glutathione S-transferase F9

Intron 1 GTAACGTAAT ... AATGGCGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	70.37	8	16	22
A2	65.79	13	26	24
A3	55.56	14	13	22
A4	81.08	7	32	28
A5	64.1	7	10	15
A6	64.71	63	91	140
A7	71.31	36	78	101
A8	57.31	52.8	33.8	108
A9	59.71	46.2	51.8	85
A10	58.22	47	46	85

>TRINITY_DN38206_c0_g1_i3 from sample A8 / Example spliced isoform

ATTGGCGTGTCCATTTTATCACCAGCTGTCAAATACGTTCCGCATAAAAACGTTCTACAGGCCGGCCGTCAAATTCCAGGCCGCAACGAATCTCTCTTTCTGCTCTACCAGTCGTTGGGAGATTGTGAGCCCCATGTAGTCTTCTATTTCAATTGATTAAGGTGCACGGCCTTCCTTTCTCATCGTGCACAGCCAGAGTG
CTGGCGTGCTTGAATGAAAAGCAGGTCGAGTACGAGCTCATACCTGTGAATGTGAGGGATGGGGATCATAAACAGCCACAATATCTGTCTCTCAATCCTTTTGGACTGATACCAGTTCTTCAAGACGGAGACCTCACCTTATTTGAGTCCAGAGCAATCATAAAATATTTGGCTAAGAAATACCAAGGACAAGGCAGTCC
CAATCTGTTGGGAAGCACAATGGAGGAGGAAGCAGTGGTTGAACAGTGGTGTGAGGTGGAGGCTCATCAATTCAATCCTCCCTGTTACGCAATTGTGAGCCAGATTATCATCAATCCCTTGAAGGGAGGCACCACTGATGAAGCAGTGGTGGAAAGCAATGCAGAAAAGTTGAGCAAATTATTGGATGTGTATGAAGAAT
GGCTGTCAAAGAGCAAGTACTTGGCAGGAGATTGGTTCAGCTTGGCAGATCTTCAACATATGCCCTTTCTCCACTATTTGGTTAATGATGTTGGGAAGGCCACCCTCATTTCCTCCAGAAAGCATGTCAATGCTTGGTGGGAAGACATCTCTTCTCGCCAGGCTTGGAAAAAGGTTGCAGTACAGATGAAATTCCCAACC
AAATTGTCTGAGATGTAAGGGTGTTAATGTCAAAGATATAAAACTATTAGTGTAATGTTTCTCAGCCCTTTCTGCCTCTGGTTGTTATGTGATTCATTAATCATACTTCCCTTTTATTGTTGTTATTATTAACATTGTTATAACATTAGAGGTGACTGTTTATTTATTATTATTAACATTGTTATAGTATCAGAGGCTGT
GGAGTGTTTGTGGCTG

>TRINITY_DN38206_c0_g1_i2 from sample A8 / Example unspliced isoform:

ATTGGCGTGTCCATTTTATCACCAGCTGTCAAATACGTTCCGCATAAAAACGTTCTACAGGCCGGCCGTCAAATTCCAGGCCGCAACGAATCTCTCTTTCTGCTCTACCAGTCGTTGGGAGATTGTGAGCCCCATGTAGTCTTCTATTTCAATTGgtaacgtaatctctttctgctctaccagtcgttgggagattgtga
gccccctgtagtcttctatttcaattggtaacgtaatctacggggattgaatatcgtgggggcgttatattatacgataggtgtctgtgttcttcgatctgatttgtctttttaccaatggcgaagATTAAGGTGCACGGCCTTCCTTTCTCATCGTGCACAGCCAGAGTGCTGGCGTGCTTGAATGAAAAGCAGGTCGA
GTACGAGCTCATACCTGTGAATGTGAGGGATGGGGATCATAAACAGCCACAATATCTGTCTCTCAATCCTTTTGGACTGATACCAGTTCTTCAAGACGGAGACCTCACCTTATTTGAGTCCAGAGCAATCATAAAATATTTGGCTAAGAAATACCAAGGACAAGGCAGTCCCAATCTGTTGGGAAGCACAATGGAGGAGG
AAGCAGTGGTTGAACAGTGGTGTGAGGTGGAGGCTCATCAATTCAATCCTCCCTGTTACGCAATTGTGAGCCAGATTATCATCAATCCCTTGAAGGGAGGCACCACTGATGAAGCAGTGGTGGAAAGCAATGCAGAAAAGTTGAGCAAATTATTGGATGTGTATGAAGAATGGCTGTCAAAGAGCAAGTACTTGGCAGGA
GATTGGTTCAGCTTGGCAGATCTTCAACATATGCCCTTTCTCCACTATTTGGTTAATGATGTTGGGAAGGCCACCCTCATTTCCTCCAGAAAGCATGTCAATGCTTGGTGGGAAGACATCTCTTCTCGCCAGGCTTGGAAAAAGGTTGCAGTACAGATGAAATTCCCAACCAAATTGTCTGAGATGTAAGGGTGTTAATG
TCAAAGATATAAAACTATTAGTGTAATGTTTCTCAGCCCTTTCTGCCTCTGGTTGTTATGTGATTCATTAATCATACTTCCCTTTTATTGTTGTTATTATTAACATTGTTATAACATTAGAGGTGACTGTTTATTTATTATTATTAACATTGTTATAGTATCAGAGGCTGTGGAGTGTTTGTGGCTG

Intron 2 GTAACGTAAT ... AATGGCGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	73.02	5	14.5	13
A2	73.16	9	25	14.5
A3	69.56	7	13.5	13
A4	75	6.5	23.5	18
A5	65	3.5	7	8.5
A6	62.67	41.5	71	78.5
A7	66.14	25	58.5	58.5
A8	65.61	29	46	65
A9	65.82	30	57.5	52.5
A10	64.83	28.5	49.5	53

>TRINITY_DN39737_c0_g1_i1 from sample A7 / Example spliced isoform

TATTTCAATTGGTAACGTAATCTCTTTCTGCTCTACCAGTCGTTGGGAGATTGTGAGCCCCATGTAGTCTTCTATTTCAATTGCTTTCTGCTCTACCAGTCGTTGGGAGATTGTGAGCCCCATTAAGGTGCACGGCCTTCCTTTCTCATCGTGCACAGCCAGAGTGCTGGCGTGCTTGAATGAAAAGCAGGTCGAGTACG
AGCTCATACCTGTGAATGTGAGGGATGGGGATCATAAACAGCCACAATATCTGTCTCTCAATCCTTTTGGACTGATACCAGTTCTTCAAGACGGAGACCTCACCTTATTTGGTTGAGTGTCCAATGCATCTAGTGCATCATCTAATTCAAGGAAGTCCAGAGCAATCATAAAATATTTGGCTAAGAAATACCAAGGACAA
GGCAGTCCCAATCTGTTGGGAAGCACAATGGAGGAGGAAGCAGTGGTTGAACAGTGGTGTGAGGTGGAGGCTCATCAATTCAATCCTCCCTGTTACGCAATTGTGAGCCAGATTATCATCAATCCCTTGAAGGGAGGCACCACTGATGAAGCAGTGGTGGAAAGCAATGCAGAAAAGTTGAGCAAATTATTGGATGTGTA
TGAAGAATGGCTGTCAAAGAGCAAGTACTTGGCAGGAGATTGGTTCAGCTTGGCAGATCTTCAACATATGCCCTTTCTCCACTATTTGGTTAATGATGTTGGGAAGGCCACCCTCATTTCCTCCAGAAAGCATGTCAATGCTTGGTGGGAAGACATCTCTTCTCGCCAGGCTTGGAAAAAGGTTGCAGTACAGATGAAAT
TCCCAACCAAATTGTCTGAGATGTAAGGGTGTTAATGTCAAAGATATAAAACTATTAGTGTAATGTTTCTCAGCCCTTTCTGCCTCTGGTTGTTATGTGATTCATTAATCATACTTCCCTTTTATTGTTGTTATTATTAACATTGTTATAACATTAGAGGTGACTGTTTATTTATTATTATTAACATTGTTATAGTATCA
GAGGCTGTGGAGTGTTTGTG

>TRINITY_DN39737_c0_g1_i4 from sample A7 / Example unspliced isoform:

TATTTCAATTGGTAACGTAATCTCTTTCTGCTCTACCAGTCGTTGGGAGATTGTGAGCCCCATGTAGTCTTCTATTTCAATTGGTAACGTAATCTCTTTCTGCTCTACCAGTCGTTGGGAGATTGTGAGCCCCCTGTAGTCTTCTATTTCAATTGgtaacgtaatctacggggattgaatatcgtgggggcgttatatta
tacgataggtgtctgtgttcttcgatctgatttgtctttttaccaatggcgaagCTTTCTGCTCTACCAGTCGTTGGGAGATTGTGAGCCCCATTAAGGTGCACGGCCTTCCTTTCTCATCGTGCACAGCCAGAGTGCTGGCGTGCTTGAATGAAAAGCAGGTCGAGTACGAGCTCATACCTGTGAATGTGAGGGATGGG
GATCATAAACAGCCACAATATCTGTCTCTCAATCCTTTTGGACTGATACCAGTTCTTCAAGACGGAGACCTCACCTTATTTGGTTGAGTGTCCAATGCATCTAGTGCATCATCTAATTCAAGGAATTTCAGGGTTGATATGAACTTTGACATTCTATAGTGCTGAATTCTGGCAACTGACAGGGAGTTTACTACAAGATT
AGAGGACTCCTCTACTTCAATACACATACAAACAATTGACTGATGATCCCAACCTCATCCTAACTCAATCAAGGCTGTAAAAAATGAAGGTGAACTAAAGAGTGAATGGTCTGAACAGATGAAGGGGAATTTTGGAGGCCTG