sp|F4IV45|CHR10_ARATH ----> Probable helicase CHR10
Intron 1 GTAAGAAACT ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.89 | 16 | 8 | 5 |
| A2 | 29.73 | 13 | 4 | 7 |
| A3 | 44.83 | 8 | 9 | 4 |
| A4 | 26.67 | 11 | 6 | 2 |
| A5 | 71.43 | 1 | 0 | 5 |
| A6 | 14.29 | 57 | 6 | 13 |
| A7 | 15.22 | 39 | 6 | 8 |
| A8 | 16.67 | 70 | 8 | 20 |
| A9 | 22.11 | 37 | 9 | 12 |
| A10 | 20.37 | 43 | 12 | 10 |
>TRINITY_DN131358_c0_g1_i23 from sample A1 / Example spliced isoformGGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACGGTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCA
AGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCATGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGC
CCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTGGTACAACTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGACATTTTGCTTGAGAAGCTACATGTTCAA
GGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGAACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAGTGACATCAGAAAAGCCAATGACGATGC
TCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAGCTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCATTGTAACAGAAAACACAGTTGAGGAGG
TGATTATGCACAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGACCCTTCAGACAACTTAGAAAGAAGCTCGAGTGAAATGAATTATACTGAAGTAAAA
AAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAAAGAAGTAGATTTAGACCATGGAAAAAATGCTGATCAAGTGGCATTTGAGGCCTG
GGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTAAATGGGAAGCTCTTGGTTATAAGTCTTTAGCCATTGAAGGCGCATCTGAGTGTC
TGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTTGATGCCCTAGCAAATCTTTCTCAAATAGTTCCAGAAGCTTATAGGAAAGCTCAT
GAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGAAGAAATTCAGATGAAAATGAGCTGGACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCATTTGGAAGGCTGCTTAAAAAAAGTTAC
CATCTCAGCCATTCAGAAGTCAGCATCTATTCATATGCCTAGAATTGGGTGTCGTTCGGGACAGGGGCATAAAGAGTGGTATGCTGTGGAACGTCTTCTGCATAAGTATGCAGCCACATATGGTGTAAAAATATACGTGTACTATTTTAAGCGGGCAACAAGAAGTGAATCCGACAGTAAACCTGAATGATGAGATGGTT
GCTGTACAAAACATAGAAGCTTGCTGCATACAACTAACTCACAATAGAAGGCATTGTAAAATGTAAACTGCTAAAAGTCTTTGAGTAACTCTAATGGTCTAAGCAAGACCTGTGATTGTCATTGTTCGAACATTTATTTTTTGTATTTATATCCTGCCTTTCTTTCATCAATTTGTTAAACTTTTGTCACTGATTTTTTA
TAAGTTCCTTCAATCCCACTTCTGTAGTGAAAAAGGAAAAAGGAATAAACATTCTCATCGCTGGTTGTCAATTTGTTTTATAGTTAGATATTCTTGCTATACTTTTTTCCCAGGATCACGGCATTGAAATTGTTGTGATCTCAGACATCACATATCACAATAGTAGACATCAACCCAAGATGTATATTTTTTTTGGTAGT
CTTCAGGTATATTAGACATACA
>TRINITY_DN131358_c0_g1_i13 from sample A1 / Example unspliced isoform:CTCGATTGTTATGTTCATGTTTGTTTTTCTCTGGTTAATCTAGACCAATAGGAAGTAAAGTAGGCAATGGAACAAGTTGGCCCATTCTTACATTCTATTCGTTTTAATGAGATTAACGTGTCCTGCTGCCAGCATCTATTCATATGCCTAGAATTGGGTGTCGTTCGGGACAGGGGCATAAAGAGTGGTATGCTGTGGAA
CGTCTTCTGCATAAGTATGCAGCCACATATGGTGTAAAAATATACGTgtaagaaactctttgccttgatgttcagatacatgagtatcagtactagaataatttgtgatatactggaagaataagctaaccattgctttgttacatttaagcttgacgttcattgttttttcgtggatatgcatgagccttggactacca
tatttgcagGTACTATTTTAAGCGGGCAACAAGAAGTGAATCCGACAGTAAACCTGAATGATGAGATGGTTGCTGTACAAAACATAGAAGCTTGCTGCATACAACTAACTCACAATAGAAGGCATTGTAAAATGTAAACTGCTAAAAGTCTTTGAGTAACTCTAATGGTCTAAGCAAGACCTGTGATTGTCATTGTTCGA
ACATTTATTTTTTGTATTTATATCCTGCCTTTCTTTCATCAATTTGTTAAACTTTTGTCACTGATTTTTTATAAGTTCCTTCAATCCCACTTCTGTAGTGAAAAAGGAAAAAGGAATAAACATTCTCATCGCTGGTTGTCAATTTGTTTTATAGTTAGATATTCTTGCTATACTTTTTTCCCAGGATCACGGCATTGAAA
TTGTTGTGATCTCAGACATCACATATCACAATAGTAGACATCAACCCAAGATGTATATTTTTTTTGGTAGTCTTCAGGTATATTAGACATACA
Intron 2 GTCAGTCTTC ... ATTTTAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.67 | 32 | 14 | 13 |
| A2 | 50 | 7 | 7 | 7 |
| A3 | 47.37 | 5 | 4 | 5 |
| A4 | 66.67 | 2 | 2 | 6 |
| A5 | 52.94 | 4 | 6 | 3 |
| A6 | 17.65 | 7 | 3 | 0 |
| A7 | 25.93 | 10 | 6 | 1 |
| A8 | 25 | 6 | 4 | 0 |
| A9 | 100 | 0 | 0 | 1 |
| A10 | 25 | 9 | 6 | 0 |
>TRINITY_DN131358_c0_g1_i23 from sample A1 / Example spliced isoformGGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACGGTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCA
AGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCATGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGC
CCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTGGTACAACTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGACATTTTGCTTGAGAAGCTACATGTTCAA
GGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGAACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAGTGACATCAGAAAAGCCAATGACGATGC
TCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAGCTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCATTGTAACAGAAAACACAGTTGAGGAGG
TGATTATGCACAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGACCCTTCAGACAACTTAGAAAGAAGCTCGAGTGAAATGAATTATACTGAAGTAAAA
AAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAAAGAAGTAGATTTAGACCATGGAAAAAATGCTGATCAAGTGGCATTTGAGGCCTG
GGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTAAATGGGAAGCTCTTGGTTATAAGTCTTTAGCCATTGAAGGCGCATCTGAGTGTC
TGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTTGATGCCCTAGCAAATCTTTCTCAAATAGTTCCAGAAGCTTATAGGAAAGCTCAT
GAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGAAGAAATTCAGATGAAAATGAGCTGGACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCATTTGGAAGGCTGCTTAAAAAAAGTTAC
CATCTCAGCCATTCAGAAGTCAGCATCTATTCATATGCCTAGAATTGGGTGTCGTTCGGGACAGGGGCATAAAGAGTGGTATGCTGTGGAACGTCTTCTGCATAAGTATGCAGCCACATATGGTGTAAAAATATACGTGTACTATTTTAAGCGGGCAACAAGAAGTGAATCCGACAGTAAACCTGAATGATGAGATGGTT
GCTGTACAAAACATAGAAGCTTGCTGCATACAACTAACTCACAATAGAAGGCATTGTAAAATGTAAACTGCTAAAAGTCTTTGAGTAACTCTAATGGTCTAAGCAAGACCTGTGATTGTCATTGTTCGAACATTTATTTTTTGTATTTATATCCTGCCTTTCTTTCATCAATTTGTTAAACTTTTGTCACTGATTTTTTA
TAAGTTCCTTCAATCCCACTTCTGTAGTGAAAAAGGAAAAAGGAATAAACATTCTCATCGCTGGTTGTCAATTTGTTTTATAGTTAGATATTCTTGCTATACTTTTTTCCCAGGATCACGGCATTGAAATTGTTGTGATCTCAGACATCACATATCACAATAGTAGACATCAACCCAAGATGTATATTTTTTTTGGTAGT
CTTCAGGTATATTAGACATACA
>TRINITY_DN131358_c0_g1_i25 from sample A1 / Example unspliced isoform:GGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATCATGATCAACCTCTACCCTTTGATGTTTTCCTAACAACATATGACTTGGTAGTTTTGGATGCACACTTTCTTTCTCATATCCAATGGCGTTATACGATCATTGATGAAGCTCAACGAATCAAAAACCCTTCGAGTGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACG
GTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCAAGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCA
TGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTgtcagtcttcaaactgaaaatgcttgtgaatatcttgaaacagtcgacctttgcccagcatttttagctttggagaataaatctaatattgttatttttatcattgcctaacaataatgtggtttcg
tgcttcaaattttaatagACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGCCCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTAAGTATTAGCTATAGTACAATGAAATGCAGCTATATTCTTTCCGTATTTAAGTAAGCATTTC
TGTTTAAGATTTCATTTTTCTTGTGTTCTTTTTACTTCTATTTTATGAGAATGATGAGAGCAGTAAGTGGGAAACTTGCACAGAAGGTTGTGAGGCCTAGTTTCTAAGCTTCAATGTTAAGCTGAGTCGTGTGCTTTAGCTTACTCAATGTGCTTCTTGGCTTACATTTGTGATGCTAAGTTTGAGTTAATATTTATGCT
GGGCCCTGGCTTAAGAGGGCTATTCTGCTTCAGTTTGTCATGCTTATGGCATGCGATCTTAAGAGAGTGCAATTGAATTCTTTGTTTCATCAAGATGTAAAATGATAACCATGTTACCATTCTTTATCATCCAAAGAGGCATTGGTTGCTAAGGATTATGGTAAATCTAAAGGCAAGTTCACACACGCAAAAGCTGTGAA
TGGTATGGTTATTTGTTCACAAATCAAATAAAAATGTTTGTAAACATTTAAATTATTCTTATTTAGAATTTATAACCTTGCAGGTGGTACAACTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGAC
ATTTTGCTTGAGAAGCTACATGTTCAAGGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGAACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAG
TGACATCAGAAAAGCCAATGACGATGCTCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAGCTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCA
TTGTAACAGAAAACACAGTTGAGGAGGTGATTATGCACAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGACCCTTCAGACAACTTAGAAAGAAGCTCG
AGTGAAATGAATTATACTGAAGTAAAAAAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAAAGAAGTAGATTTAGACCATGGAAAAAA
TGCTGATCAAGTGGCATTTGAGGCCTGGGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTAAATGGGAAGCTCTTGGTTATAAGTCTT
TAGCCATTGAAGGCGCATCTGAGTGTCTGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTTGATGCCCTAGCAAATCTTTCTCAAATA
GTTCCAGAAGCTTATAGGAAAGCTCATGAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGAAGAAATTCAGATGAAAATGAGCTGGACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCA
TTTGGAAGGCTGCTTAAAAAAAGTTACCATCTCAGCCATTCAGAAGTCAGGTAATTCTACTATTATATTTTGTAGATTTATTTATATTTCTTGTAACTATTAGTGTTTTTTTCTTAGTTGTTTTTCATTTTATAAATTCTCCTTATGGTATGCTGTATTTGTCAAACATCATGCTTGTTCATCAATGAAAATTTGCTTTT
TAGTAATGCCTTGTAGCTTTTGGGCATGTACAACATGGACAGGGCAGTG
Intron 3 GTGAATTGAT ... TTTTTAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.09 | 34 | 13 | 11 |
| A2 | 31.82 | 30 | 10 | 18 |
| A3 | 21.43 | 11 | 4 | 2 |
| A4 | 34.48 | 19 | 7 | 13 |
| A5 | 40 | 3 | 0 | 4 |
| A6 | 23.08 | 5 | 1 | 2 |
| A7 | 20.93 | 17 | 6 | 3 |
| A8 | 33.33 | 4 | 2 | 2 |
| A9 | 20.83 | 19 | 2 | 8 |
| A10 | 26.37 | 13.3 | 4.6 | 5 |
>TRINITY_DN131358_c0_g1_i23 from sample A1 / Example spliced isoformGGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACGGTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCA
AGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCATGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGC
CCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTGGTACAACTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGACATTTTGCTTGAGAAGCTACATGTTCAA
GGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGAACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAGTGACATCAGAAAAGCCAATGACGATGC
TCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAGCTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCATTGTAACAGAAAACACAGTTGAGGAGG
TGATTATGCACAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGACCCTTCAGACAACTTAGAAAGAAGCTCGAGTGAAATGAATTATACTGAAGTAAAA
AAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAAAGAAGTAGATTTAGACCATGGAAAAAATGCTGATCAAGTGGCATTTGAGGCCTG
GGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTAAATGGGAAGCTCTTGGTTATAAGTCTTTAGCCATTGAAGGCGCATCTGAGTGTC
TGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTTGATGCCCTAGCAAATCTTTCTCAAATAGTTCCAGAAGCTTATAGGAAAGCTCAT
GAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGAAGAAATTCAGATGAAAATGAGCTGGACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCATTTGGAAGGCTGCTTAAAAAAAGTTAC
CATCTCAGCCATTCAGAAGTCAGCATCTATTCATATGCCTAGAATTGGGTGTCGTTCGGGACAGGGGCATAAAGAGTGGTATGCTGTGGAACGTCTTCTGCATAAGTATGCAGCCACATATGGTGTAAAAATATACGTGTACTATTTTAAGCGGGCAACAAGAAGTGAATCCGACAGTAAACCTGAATGATGAGATGGTT
GCTGTACAAAACATAGAAGCTTGCTGCATACAACTAACTCACAATAGAAGGCATTGTAAAATGTAAACTGCTAAAAGTCTTTGAGTAACTCTAATGGTCTAAGCAAGACCTGTGATTGTCATTGTTCGAACATTTATTTTTTGTATTTATATCCTGCCTTTCTTTCATCAATTTGTTAAACTTTTGTCACTGATTTTTTA
TAAGTTCCTTCAATCCCACTTCTGTAGTGAAAAAGGAAAAAGGAATAAACATTCTCATCGCTGGTTGTCAATTTGTTTTATAGTTAGATATTCTTGCTATACTTTTTTCCCAGGATCACGGCATTGAAATTGTTGTGATCTCAGACATCACATATCACAATAGTAGACATCAACCCAAGATGTATATTTTTTTTGGTAGT
CTTCAGGTATATTAGACATACA
>TRINITY_DN131358_c0_g1_i4 from sample A1 / Example unspliced isoform:GGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATCATGATCAACCTCTACCCTTTGATGTTTTCCTAACAACATATGACTTGGTAGTTTTGGATGCACACTTTCTTTCTCATATCCAATGGCGTTATACGATCATTGATGAAGCTCAACGAATCAAAAACCCTTCGAGTGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACG
GTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCAAGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCA
TGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGCCCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTGGTACAA
CTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGACATTTTGCTTGAGAAGCTACATGTTCAAGGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGA
ACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAGTGACATCAGAAAAGCCAATGACGATGCTCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAG
CTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCATTGTAACAGAAAACACAGTTGAGGAGgtgaattgatttctagatctaataaagttttctttgctatctgtttaaagattgcaaacttcaaat
catgtgatgcataacgtatgtaggcgtgggcaaactaaagcattttttaatagGTGATTATGCACAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGAC
CCTTCAGACAACTTAGAAAGAAGCTCGAGTGAAATGAATTATACTGAAGTAAAAAAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAA
AGAAGTAGATTTAGACCATGGAAAAAATGCTGATCAAGTGGCATTTGAGGCCTGGGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTA
AATGGGAAGCTCTTGGTTATAAGTCTTTAGCCATTGAAGGCGCATCTGAGTGTCTGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTT
GATGCCCTAGCAAATCTTTCTCAAATAGTTCCAGAAGCTTATAGGAAAGCTCATGAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGTTTGTCCAGGCTACTATTCTTCTTGTTACACACTTATACACACACACAATTCTGAAAAATGCTTTGTATTTTATTGGAAAAGTATTGTATCCTTTT
GAGAGATTCTTTGGGATGATAAATGCCTTTCCAATGTATGCACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCATTTGGAAGGCTGCTTAAAAAAAGTTACCATCTCAGCCATTCAGAAGTCAG
Intron 4 GTAAGTATTA ... AACCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36 | 16 | 13 | 5 |
| A2 | 25.71 | 13 | 6 | 3 |
| A3 | 31.03 | 10 | 4 | 5 |
| A4 | 33.33 | 8 | 5 | 3 |
| A5 | 15.79 | 8 | 1 | 2 |
| A6 | 11.11 | 4 | 0 | 1 |
| A7 | 33.33 | 2 | 1 | 1 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 0 | 4 | 0 | 0 |
| A10 | 20 | 4 | 0 | 2 |
>TRINITY_DN131358_c0_g1_i23 from sample A1 / Example spliced isoformGGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACGGTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCA
AGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCATGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGC
CCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTGGTACAACTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGACATTTTGCTTGAGAAGCTACATGTTCAA
GGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGAACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAGTGACATCAGAAAAGCCAATGACGATGC
TCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAGCTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCATTGTAACAGAAAACACAGTTGAGGAGG
TGATTATGCACAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGACCCTTCAGACAACTTAGAAAGAAGCTCGAGTGAAATGAATTATACTGAAGTAAAA
AAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAAAGAAGTAGATTTAGACCATGGAAAAAATGCTGATCAAGTGGCATTTGAGGCCTG
GGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTAAATGGGAAGCTCTTGGTTATAAGTCTTTAGCCATTGAAGGCGCATCTGAGTGTC
TGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTTGATGCCCTAGCAAATCTTTCTCAAATAGTTCCAGAAGCTTATAGGAAAGCTCAT
GAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGAAGAAATTCAGATGAAAATGAGCTGGACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCATTTGGAAGGCTGCTTAAAAAAAGTTAC
CATCTCAGCCATTCAGAAGTCAGCATCTATTCATATGCCTAGAATTGGGTGTCGTTCGGGACAGGGGCATAAAGAGTGGTATGCTGTGGAACGTCTTCTGCATAAGTATGCAGCCACATATGGTGTAAAAATATACGTGTACTATTTTAAGCGGGCAACAAGAAGTGAATCCGACAGTAAACCTGAATGATGAGATGGTT
GCTGTACAAAACATAGAAGCTTGCTGCATACAACTAACTCACAATAGAAGGCATTGTAAAATGTAAACTGCTAAAAGTCTTTGAGTAACTCTAATGGTCTAAGCAAGACCTGTGATTGTCATTGTTCGAACATTTATTTTTTGTATTTATATCCTGCCTTTCTTTCATCAATTTGTTAAACTTTTGTCACTGATTTTTTA
TAAGTTCCTTCAATCCCACTTCTGTAGTGAAAAAGGAAAAAGGAATAAACATTCTCATCGCTGGTTGTCAATTTGTTTTATAGTTAGATATTCTTGCTATACTTTTTTCCCAGGATCACGGCATTGAAATTGTTGTGATCTCAGACATCACATATCACAATAGTAGACATCAACCCAAGATGTATATTTTTTTTGGTAGT
CTTCAGGTATATTAGACATACA
>TRINITY_DN131358_c0_g1_i25 from sample A1 / Example unspliced isoform:GGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATCATGATCAACCTCTACCCTTTGATGTTTTCCTAACAACATATGACTTGGTAGTTTTGGATGCACACTTTCTTTCTCATATCCAATGGCGTTATACGATCATTGATGAAGCTCAACGAATCAAAAACCCTTCGAGTGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACG
GTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCAAGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCA
TGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTGTCAGTCTTCAAACTGAAAATGCTTGTGAATATCTTGAAACAGTCGACCTTTGCCCAGCATTTTTAGCTTTGGAGAATAAATCTAATATTGTTATTTTTATCATTGCCTAACAATAATGTGGTTTCG
TGCTTCAAATTTTAATAGACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGCCCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTgtaagtattagctatagtacaatgaaatgcagctatattctttccgtatttaagtaagcatttc
tgtttaagatttcatttttcttgtgttctttttacttctattttatgagaatgatgagagcagtaagtgggaaacttgcacagaaggttgtgaggcctagtttctaagcttcaatgttaagctgagtcgtgtgctttagcttactcaatgtgcttcttggcttacatttgtgatgctaagtttgagttaatatttatgct
gggccctggcttaagagggctattctgcttcagtttgtcatgcttatggcatgcgatcttaagagagtgcaattgaattctttgtttcatcaagatgtaaaatgataaccatgttaccattctttatcatccaaagaggcattggttgctaaggattatggtaaatctaaaggcaagttcacacacgcaaaagctgtgaa
tggtatggttatttgttcacaaatcaaataaaaatgtttgtaaacatttaaattattcttatttagaatttataaccttgcagGTGGTACAACTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGAC
ATTTTGCTTGAGAAGCTACATGTTCAAGGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGAACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAG
TGACATCAGAAAAGCCAATGACGATGCTCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAGCTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCA
TTGTAACAGAAAACACAGTTGAGGAGGTGATTATGCACAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGACCCTTCAGACAACTTAGAAAGAAGCTCG
AGTGAAATGAATTATACTGAAGTAAAAAAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAAAGAAGTAGATTTAGACCATGGAAAAAA
TGCTGATCAAGTGGCATTTGAGGCCTGGGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTAAATGGGAAGCTCTTGGTTATAAGTCTT
TAGCCATTGAAGGCGCATCTGAGTGTCTGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTTGATGCCCTAGCAAATCTTTCTCAAATA
GTTCCAGAAGCTTATAGGAAAGCTCATGAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGAAGAAATTCAGATGAAAATGAGCTGGACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCA
TTTGGAAGGCTGCTTAAAAAAAGTTACCATCTCAGCCATTCAGAAGTCAGGTAATTCTACTATTATATTTTGTAGATTTATTTATATTTCTTGTAACTATTAGTGTTTTTTTCTTAGTTGTTTTTCATTTTATAAATTCTCCTTATGGTATGCTGTATTTGTCAAACATCATGCTTGTTCATCAATGAAAATTTGCTTTT
TAGTAATGCCTTGTAGCTTTTGGGCATGTACAACATGGACAGGGCAGTG
Intron 5 GTGAATTGAT ... TTATGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.37 | 22.6 | 13 | 15 |
| A2 | 47.13 | 19.9 | 10 | 19 |
| A3 | 39.86 | 11.1 | 4 | 8 |
| A4 | 50.44 | 16.4 | 7 | 20 |
| A5 | 79.17 | 0.6 | 0 | 4 |
| A6 | 35.11 | 3.4 | 1 | 2 |
| A7 | 25.52 | 13.8 | 6 | 3 |
| A8 | 43.75 | 5.8 | 2 | 6 |
| A9 | 36.18 | 14.4 | 2 | 11 |
| A10 | 36.69 | 9.4 | 4.8 | 5 |
>TRINITY_DN131358_c0_g1_i21 from sample A1 / Example spliced isoformGAAATGTTGAAGTTACCTAGATATATTTGGATACCGTTTTTTATTGATTTTAATATTTCTCATTGCAGGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACGGTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAA
TTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCAAGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCATGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTACTGGCTCCATTGGT
CCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGCCCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTGGTACAACTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTG
GAAAGCTCATCATTCTGGACATTTTGCTTGAGAAGCTACATGTTCAAGGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGAACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACA
TCAACATTGCAAGAATCAAGTGACATCAGAAAAGCCAATGACGATGCTCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAGCTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCA
TCATGTCCTGGCAATAAGCATTGTAACAGAAAACACAGTTGAGGAGGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGACCCTTCAGACAACTTAGAAAGA
AGCTCGAGTGAAATGAATTATACTGAAGTAAAAAAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAAAGAAGTAGATTTAGACCATGG
AAAAAATGCTGATCAAGTGGCATTTGAGGCCTGGGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTAAATGGGAAGCTCTTGGTTATA
AGTCTTTAGCCATTGAAGGCGCATCTGAGTGTCTGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAG
>TRINITY_DN131358_c0_g1_i4 from sample A1 / Example unspliced isoform:GGGACTGTGGAAAAATTGGGGACGCTCTTGATCAAATTGAACAGGCAAAGAATTGAGTTGCAGAAAACAACATGTGAAGTGGTCAATACCATAAGCTATTTTTAGCCTCGGAGACGTTAAAATATTTCCTTCCTTCCTGTTTCTGTTCCTGTTGCGATGGTAACATTCCTGCACTTGATAACCTTGAAGCTTTTCTAGTC
GCCACACCTCAACATTCACTCTTAATTTCACGGAGACACACAACCCACTCCACCATAGCTTCCCACTTAACCGACAAACTCCCATAAGAAGAAGAACAGGACGACTCGCTGATTTGAACAACCCAAATTTGGAGGTTAAGAAGGAAAACGAAAATGGCGGCAGAGATGAATTACGAGCAGAGACTCATAGCAGCGGCACG
GCTGGCCGACGACCTGGACACCACGGCTGCCAAAGAATTTGGCATTCCCAGCGCTGAAGAAGTCGCCGAGAAATGCTCAGAATGGGGAGTCACTGCACAGCTGAAGGCTCACCAGGCCCAAGGACTCTCATGGCTTATACGCCGATATGCCCGTGGCGTCAATGTTATACTCGGGGACGAGATGGGACTTGGGAAAACAT
TGCAGGCTATAAGTTTGTTGGCTTACTTGAAAGTTCAACGAAACTGCCCAGGGCCATTTTTGGTATTGTGTCCATTAAGCGTAACAGATGGCTGGGCAACTGAGTTTTCTAAGTTTTGCCCAAGGCTAAGGGTTCTTAGCTATGTTGGTGACAAAGAACGGAGAATGCAGATGCGCAAGTCCATATTTGAGCATGTGAGC
CAACAGACATCTAGATCAGATCATGATCAACCTCTACCCTTTGATGTTTTCCTAACAACATATGACTTGGTAGTTTTGGATGCACACTTTCTTTCTCATATCCAATGGCGTTATACGATCATTGATGAAGCTCAACGAATCAAAAACCCTTCGAGTGTCCTTTACACTACTCTTCAAGATCAATTTATGATTCCAAGACG
GTTGTTACTGACAGGAACCCCAGTGCAAAACAATCTTTCTGAGCTTTGGGCTTTGTTACATTTTTGTATGCCTCATATTTTCGGTGAATTGAAGGATTTCATCACTACATTCAAGCAAGTTGCAACCATGACGCAAGGTGACAATACCTCTGGATATAGCAAACAGTTTAAGCTGCTAAGATATGTTGTGCATGCATTCA
TGATTCGGCGCACAAAAGCTTTACTTGTTAAGAATGGCACTCTGTCATTGCCACCACTGTCTGAGGCTACAGTACTGGCTCCATTGGTCCCACTTCAGAAGAAAATTTATGGATCTGTATTGCATCAAGAGTTGCCCCAGCTTCTAACAAGTGGTTCAGGCACTTCTCAACACCAATCTTTGCAAAATATTGTGGTACAA
CTGCGAAAGGCATGTAGCCATCCTTACCTTTTCAATGGTGTGGAGCCAGAGCCATTTGAAGAAGGTGAACATTTGGTTCAGGCAAGTGGAAAGCTCATCATTCTGGACATTTTGCTTGAGAAGCTACATGTTCAAGGTCATCGTGTCTTGATTTTTGCTCAAATGACGCGTACAATAGACATTCTTCAGGATTACTTAGA
ACTGCGAAGGTATTCTTATGAGCGTCTTGATGGCTCAGTAAGAGCTGAGGAGCGTTTTGCAGCAGTGCAAAGCTTTAGTGGTAAAACATCAACATTGCAAGAATCAAGTGACATCAGAAAAGCCAATGACGATGCTCGTAAAGCATTTGTATTTTTAATATCTACAAGAGCAGGTGGTGTTGGGTTGAATCTTGCAGGAG
CTGATACAGTCATTTTCTATGAACAGGACTGGAATCCACAAGTCGATAAGCAAGCATTACAGCGTGCTCATCGCATTGGTCAGCTGCATCATGTCCTGGCAATAAGCATTGTAACAGAAAACACAGTTGAGGAGgtgaattgatttctagatctaataaagttttctttgctatctgtttaaagattgcaaacttcaaat
catgtgatgcataacgtatgtaggcgtgggcaaactaaagcattttttaataggtgattatgcacagGGCAAACAGAAAATTGCAGCTTAGTCACAATGTTATTGGCCATGATGATGCTGGTCTGGAAGTGCATGGATCAGAGGGTATAGCACGTGGTGATTTGAGGTCCATAATAATTTTTGGCCTGCACAAATTTGAC
CCTTCAGACAACTTAGAAAGAAGCTCGAGTGAAATGAATTATACTGAAGTAAAAAAGGTGGCTGAAAAGGTTCTCGGAAGACGCTATGCTTCTGTGGACATGGACGACGAAAGAATTAACCTCCATTCACGTGAAATGGCAAGTGTTGATTCGATTTACACTTATGCTGGAAATGATGTATCATTTGGAAAATATGCAAA
AGAAGTAGATTTAGACCATGGAAAAAATGCTGATCAAGTGGCATTTGAGGCCTGGGTGAACAAAGCTAAGGATGGATCATTGAATAAGGATTCGGGTGAAAATGTGAGAGGAAGAAAATTGGCATATTCACACGATGACAAAAAACTAGAGGAAGCTAGAGCTGAAAAGCGGAGAAAAGTCGAAGATAAAAAACATGCTA
AATGGGAAGCTCTTGGTTATAAGTCTTTAGCCATTGAAGGCGCATCTGAGTGTCTGAATGTTGAACCAAATTCAGACTCCGGGGAAGTACATTTTGTCTTTGGAGATTGTACAAATCCTATAAAAGGCCATCCTTCTGAAACAACAATAATTTTTAGTTATGTGGACAATTCTGGCATTTGGGGAAGTGGAGGCATGTTT
GATGCCCTAGCAAATCTTTCTCAAATAGTTCCAGAAGCTTATAGGAAAGCTCATGAATGTGAAGATCTTCATTTAGGAGATTTGCATTTTATACCAATCTCAGGTTTGTCCAGGCTACTATTCTTCTTGTTACACACTTATACACACACACAATTCTGAAAAATGCTTTGTATTTTATTGGAAAAGTATTGTATCCTTTT
GAGAGATTCTTTGGGATGATAAATGCCTTTCCAATGTATGCACACATCACATGAAGATTCACAATGGGTAGCTTTGGCTGTTGTACAAACATATAATCCTAGACGTAAAGTAGCCCGCAGTGATATCTCTTTACCTCATTTGGAAGGCTGCTTAAAAAAAGTTACCATCTCAGCCATTCAGAAGTCAG