sp|Q9ZNT0|VPS4_ARATH ----> Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
Intron 1 GTAAGCATCA ... CTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.53 | 63.8 | 34.4 | 125 |
| A2 | 65.99 | 37.4 | 44 | 101 |
| A3 | 60.96 | 45.5 | 39.1 | 103 |
| A4 | 63.87 | 38.8 | 42 | 95.2 |
| A5 | 64.41 | 21 | 26 | 50 |
| A6 | 64.54 | 47.1 | 52 | 119.6 |
| A7 | 62.42 | 97 | 87 | 235.2 |
| A8 | 73.08 | 21 | 31 | 83 |
| A9 | 63.08 | 87.7 | 74 | 225.6 |
| A10 | 63.65 | 78.2 | 68 | 205.8 |
>TRINITY_DN118612_c0_g2_i12 from sample A1 / Example spliced isoformATTGCATAATAGAGAGTCGGAGTGCATATAGCTGCGAGCTATCAAAAGTTAAATCTCTCAGGCAAACTCATTCAATTGATCGTCTTCTGACGAGTCAAGCTGGAAGAATCTTATGCGGCCCATCTTTATTATTCAAGGTGATCAAGTACAGCGGAAATCCTTTCATATTCATTGAAACCCCATGCGGTCACCTCTTTTAT
TGTATTCAAAGAAATTCAGAGGGTATTGCTGAGATGGGTAGCTTGGGGTTTTGATTGTCATAGAGTGAGGCGTCGTGGGCACTTTGGTTTCATAGGCTTATGCACTGGAAACTTAGTAGGGCTATTTGTCTGATTGGAATTTCCCTGTTCTTCATGTACTCTGCTCTACAGGGCGAAACACCCAGTGATTATACACATAA
GAAGTAGTAGCAATAATGTATAGCAATTTCAAGGAGCAGGCAATAGAGTATGTTAGACAGGCAGTGCAAGAGGATAATGCAGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAACGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAAAAGAACCCCAAGATTAAAGAGGCCATTACACAAAAGTTTACTGAGTA
TTTGCGAAGGGCGGAGGAGATTCGTGCCGTGTTAGATGACGGAGGCAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCTGTTGTGACCAGGGCGAAGACTAAACCCGGCAACAAGGATGGGGACGGAGATGGAGAGGATCCTGAACAATCGAAATTGCGTGCGGGCCTCAATTCAGCTATTATTCGCGAGAAGCCTAACG
TGAAATGGAGTGATGTTGCAGGGCTTGAAAGTGCCAAACAGGCTTTGCAAGAGGCGGTTATACTTCCTGTAAAGTTTCCCCAATTTTTCACAGGGAGGCGAAAGCCCTGGAAAGCTTTTCTTTTGTATGGACCTCCTGGAACTGGAAAGTCATACCTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACGTTTTTCAGC
ATTTCTTCGTCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAACTTGTTGCGAATCTATTTCAGATGGCCCGTGATTCTGCACCTTCTATCATATTCATCGATGAAATAGATTCTTTATGTGGAACACGCGGAGAAAGTAATGAGAGCGAGGCTTCTCGGCGAATAAAAACTGAACTTCTTGTACAGATGCAGGG
TGTAGGAAACAATGACGATAAAGTTCTTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTAGGCGTCGGTTTGACAAACGAATTTACATTCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGAC
GCAAGACAGAGGGCTTTTCTGGTTCTGATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTTCAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCG
GCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTCACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATGAATTTGTTCGATCAAATTTCACAATTTTTTATGCAACAC
AGATTGTTATCTACTAATTTGCTGAACTTCTCAAATTTTAGAATGTATTTGTAACTTGCAGTTCCAATTCTGTGTTTCTGCAATTCCAATTTTCTTTGTAATATATCATCAGTGCATACATAGAATGTCATATTTCTACAAAGTTGTATGATCTTGACGGATAATGTAGTTGGTAATTTTTGACATTTACATAATTACTA
AGTCACACCTTAATGTTTTAC
>TRINITY_DN118612_c0_g2_i5 from sample A1 / Example unspliced isoform:ATTGCATAATAGAGAGTCGGAGTGCATATAGCTGCGAGCTATCAAAAGTTAAATCTCTCAGGCAAACTCATTCAATTGATCGTCTTCTGACgtaagcatcattcgtcattccgttccagtggatggattctctttccttacccttgatgtgaaatactcattggttgcgtattccatgcccattttgcttcttgcttttt
tcagGAGTCAAGCTGGAAGAATCTTATGCGGCCCATCTTTATTATTCAAGGTGATCAAGTACAGCGGAAATCCTTTCATATTCATTGAAACCCCATGCGGTCACCTCTTTTATTGTATTCAAAGGTATGTACTGCGTTCTAATTTTTGTCTGCTGCTATGTTTCTGCGACAATTAGGAAATTATCTTTGGTATTTGCATG
ATTACTGATTACTTCTCG
Intron 2 GTCTGAAATT ... TTTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.3 | 248 | 0.5 | 1 |
| A2 | 1.78 | 221 | 2 | 6 |
| A3 | 0.41 | 185 | 0.5 | 1 |
| A4 | 0.32 | 156 | 0 | 1 |
| A5 | 0 | 85 | 0 | 0 |
| A6 | 0.28 | 617 | 2.5 | 1 |
| A7 | 0.05 | 925 | 0 | 1 |
| A8 | 0.47 | 799 | 2.5 | 5 |
| A9 | 0.61 | 813 | 8 | 2 |
| A10 | 0.15 | 844 | 0.5 | 2 |
>TRINITY_DN113970_c1_g1_i6 from sample A2 / Example spliced isoformAGGGGGTATAATTGTTTTGGTATTGCATAATAGAGAGTCGGAGTGCATATAGCTGCGAGCTATCAAAAGTTAAATCTCTCAGGCAAACTCATTCAATTGATCGTCTTCTGACGTAAGCATCATTCGTCATTCCGTTCCAGTGGATGGATTCTCTTTCCTTACCCTTGATGTGAAATACTCATTGGTTGCGTATTCCATGC
CCATTTTGCTTCTTGCTTTTTTCAGGAGTCAAGCTGGAAGAATCTTATGCGGCCCATCTTTATTATTCAAGGTGATCAAGTACAGCGGAAATCCTTTCATATTCATTGAAACCCCATGCGGTCACCTCTTTTATTGTATTCAAAGGGCGAAACACCCAGTGATTATACACATAAGAAGTAGTAGCAATAATGTATAGCAA
TTTCAAGGAGCAGGCAATAGAGTATGTTAGACAGGCAGTGCAAGAGGATAATGCAGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAACGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAAAAGAACCCCAAGATTAAAGAGGCCATTACACAAAAGTTTACTGAGTATTTGCGAAGGGCGGAGGAGATTCGTG
CCGTGTTAGATGACGGAGGCAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCTGTTGTGACCAGGGCGAAGACTAAACCCGGCAACAAGGATGGGGACGGAGATGGAGAGGATCCTGAACAATCGAAATTGCGTGCGGGCCTCAATTCAGCTATTATTCGCGAGAAGCCTAACGTGAAATGGAGTGATGTTGCAGGGCTT
GAAAGTGCCAAACAGGCTTTGCAAGAGGCGGTTATACTTCCTGTAAAGTTTCCCCAATTTTTCACAGGGAGGCGAAAGCCCTGGAAAGCTTTTCTTTTGTATGGACCTCCTGGAACTGGAAAGTCATACCTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACGTTTTTCAGCATTTCTTCGTCAGACCTTGTTTCAAA
ATGGATGGGTGAAAGTGAGAAACTTGTTGCGAATCTATTTCAGATGGCCCGTGATTCTGCACCTTCTATCATATTCATCGATGAAATAGATTCTTTATGTGGAACACGCGGAGAAAGTAATGAGAGCGAGGCTTCTCGGCGAATAAAAACTGAACTTCTTGTACAGATGCAGGGTGTAGGAAACAATGACGATAAAGTTC
TTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTAGGCGTCGGTTTGACAAACGAATTTACATTCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGACGCAAGACAGAGGGCTTTTCTGGTTCT
GATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTTCAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCGGCCAAGATTCTGCCACCACCAATTGC
AAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTCACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATGAATTTGTTCGATCAAATTTCACAATTTTTTATGCAACACAGATTGTTATCTACTAATTTGCTGAA
CTTCTCAAATTTTAGAATGTATTTGTAACTTGCAGTTCCAATTCTGTGTTTCTGCAATTCCAATTTTCTTTGTAATATATCATCAGTGCATACATAGAATGTCATATTTCTACAAAGTTGTATGATCTTGACGGATAATGTAGTTGGTAATTTTTGACATTTACATAATTACTAAGTCACACCTTAATGTTTTACG
>TRINITY_DN113970_c1_g1_i11 from sample A2 / Example unspliced isoform:CACTCCATATGCATTGGATCAGgtctgaaatttccccacaacaaatggaaaatccctttacttagatgtgaactattcatttgatttgctagaagtttaaaaaaaggatacacattgaaaagacttgagagtgctcatcccttatggatattgcatttatttcagGCAATTAGGCGTCGGTTTGACAAACGAATTTACAT
TCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGGTTGACTATTGTCCATGCATCTTTCTTCATCCATTGTGTCAGAAATAGGAGTGCACAACTTCAGAATGGGAATGTATTAAATGAATGGATTAGAAATGGTAGCAAATGGTTTGGATGTAAAATGAATATTTCTCTCTCCTTACACTGTTCAGATTGTGCA
AGATGCATAATTATGTCATCTTGTATGTTATGACTAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGACGCAAGACAGAGGGCTTTTCTGGTTCTGATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTT
CAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCGGCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTC
ACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATG
Intron 3 GTTGACTATT ... TTATGACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.34 | 183 | 34.4 | 23 |
| A2 | 11.56 | 139 | 20.7 | 17.5 |
| A3 | 12.48 | 136 | 23.2 | 24.5 |
| A4 | 12.42 | 129 | 21.9 | 15.8 |
| A5 | 13.2 | 83 | 14.6 | 11.5 |
| A6 | 13.12 | 512 | 93.9 | 95.3 |
| A7 | 14.37 | 736 | 154.7 | 102 |
| A8 | 13.22 | 614 | 111.9 | 108.8 |
| A9 | 13.52 | 634 | 121 | 95.5 |
| A10 | 14.49 | 612 | 128.1 | 90.1 |
>TRINITY_DN113970_c1_g1_i6 from sample A2 / Example spliced isoformAGGGGGTATAATTGTTTTGGTATTGCATAATAGAGAGTCGGAGTGCATATAGCTGCGAGCTATCAAAAGTTAAATCTCTCAGGCAAACTCATTCAATTGATCGTCTTCTGACGTAAGCATCATTCGTCATTCCGTTCCAGTGGATGGATTCTCTTTCCTTACCCTTGATGTGAAATACTCATTGGTTGCGTATTCCATGC
CCATTTTGCTTCTTGCTTTTTTCAGGAGTCAAGCTGGAAGAATCTTATGCGGCCCATCTTTATTATTCAAGGTGATCAAGTACAGCGGAAATCCTTTCATATTCATTGAAACCCCATGCGGTCACCTCTTTTATTGTATTCAAAGGGCGAAACACCCAGTGATTATACACATAAGAAGTAGTAGCAATAATGTATAGCAA
TTTCAAGGAGCAGGCAATAGAGTATGTTAGACAGGCAGTGCAAGAGGATAATGCAGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAACGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAAAAGAACCCCAAGATTAAAGAGGCCATTACACAAAAGTTTACTGAGTATTTGCGAAGGGCGGAGGAGATTCGTG
CCGTGTTAGATGACGGAGGCAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCTGTTGTGACCAGGGCGAAGACTAAACCCGGCAACAAGGATGGGGACGGAGATGGAGAGGATCCTGAACAATCGAAATTGCGTGCGGGCCTCAATTCAGCTATTATTCGCGAGAAGCCTAACGTGAAATGGAGTGATGTTGCAGGGCTT
GAAAGTGCCAAACAGGCTTTGCAAGAGGCGGTTATACTTCCTGTAAAGTTTCCCCAATTTTTCACAGGGAGGCGAAAGCCCTGGAAAGCTTTTCTTTTGTATGGACCTCCTGGAACTGGAAAGTCATACCTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACGTTTTTCAGCATTTCTTCGTCAGACCTTGTTTCAAA
ATGGATGGGTGAAAGTGAGAAACTTGTTGCGAATCTATTTCAGATGGCCCGTGATTCTGCACCTTCTATCATATTCATCGATGAAATAGATTCTTTATGTGGAACACGCGGAGAAAGTAATGAGAGCGAGGCTTCTCGGCGAATAAAAACTGAACTTCTTGTACAGATGCAGGGTGTAGGAAACAATGACGATAAAGTTC
TTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTAGGCGTCGGTTTGACAAACGAATTTACATTCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGACGCAAGACAGAGGGCTTTTCTGGTTCT
GATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTTCAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCGGCCAAGATTCTGCCACCACCAATTGC
AAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTCACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATGAATTTGTTCGATCAAATTTCACAATTTTTTATGCAACACAGATTGTTATCTACTAATTTGCTGAA
CTTCTCAAATTTTAGAATGTATTTGTAACTTGCAGTTCCAATTCTGTGTTTCTGCAATTCCAATTTTCTTTGTAATATATCATCAGTGCATACATAGAATGTCATATTTCTACAAAGTTGTATGATCTTGACGGATAATGTAGTTGGTAATTTTTGACATTTACATAATTACTAAGTCACACCTTAATGTTTTACG
>TRINITY_DN113970_c1_g1_i11 from sample A2 / Example unspliced isoform:CACTCCATATGCATTGGATCAGGTCTGAAATTTCCCCACAACAAATGGAAAATCCCTTTACTTAGATGTGAACTATTCATTTGATTTGCTAGAAGTTTAAAAAAAGGATACACATTGAAAAGACTTGAGAGTGCTCATCCCTTATGGATATTGCATTTATTTCAGGCAATTAGGCGTCGGTTTGACAAACGAATTTACAT
TCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGgttgactattgtccatgcatctttcttcatccattgtgtcagaaataggagtgcacaacttcagaatgggaatgtattaaatgaatggattagaaatggtagcaaatggtttggatgtaaaatgaatatttctctctccttacactgttcagattgtgca
agatgcataattatgtcatcttgtatgttatgactagGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGACGCAAGACAGAGGGCTTTTCTGGTTCTGATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTT
CAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCGGCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTC
ACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATG
Intron 4 GTATTTGTAA ... TGGTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.41 | 22 | 66 | 21 |
| A2 | 66.32 | 16 | 45 | 18 |
| A3 | 55.4 | 31 | 56 | 21 |
| A4 | 58.02 | 17 | 30 | 17 |
| A5 | 46.67 | 20 | 27 | 8 |
| A6 | 68.2 | 197 | 554 | 291 |
| A7 | 64.01 | 228 | 547 | 264 |
| A8 | 65.27 | 323 | 767 | 447 |
| A9 | 67.79 | 206 | 552 | 315 |
| A10 | 70.16 | 104 | 354 | 135 |
>TRINITY_DN118612_c0_g2_i12 from sample A1 / Example spliced isoformATTGCATAATAGAGAGTCGGAGTGCATATAGCTGCGAGCTATCAAAAGTTAAATCTCTCAGGCAAACTCATTCAATTGATCGTCTTCTGACGAGTCAAGCTGGAAGAATCTTATGCGGCCCATCTTTATTATTCAAGGTGATCAAGTACAGCGGAAATCCTTTCATATTCATTGAAACCCCATGCGGTCACCTCTTTTAT
TGTATTCAAAGAAATTCAGAGGGTATTGCTGAGATGGGTAGCTTGGGGTTTTGATTGTCATAGAGTGAGGCGTCGTGGGCACTTTGGTTTCATAGGCTTATGCACTGGAAACTTAGTAGGGCTATTTGTCTGATTGGAATTTCCCTGTTCTTCATGTACTCTGCTCTACAGGGCGAAACACCCAGTGATTATACACATAA
GAAGTAGTAGCAATAATGTATAGCAATTTCAAGGAGCAGGCAATAGAGTATGTTAGACAGGCAGTGCAAGAGGATAATGCAGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAACGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAAAAGAACCCCAAGATTAAAGAGGCCATTACACAAAAGTTTACTGAGTA
TTTGCGAAGGGCGGAGGAGATTCGTGCCGTGTTAGATGACGGAGGCAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCTGTTGTGACCAGGGCGAAGACTAAACCCGGCAACAAGGATGGGGACGGAGATGGAGAGGATCCTGAACAATCGAAATTGCGTGCGGGCCTCAATTCAGCTATTATTCGCGAGAAGCCTAACG
TGAAATGGAGTGATGTTGCAGGGCTTGAAAGTGCCAAACAGGCTTTGCAAGAGGCGGTTATACTTCCTGTAAAGTTTCCCCAATTTTTCACAGGGAGGCGAAAGCCCTGGAAAGCTTTTCTTTTGTATGGACCTCCTGGAACTGGAAAGTCATACCTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACGTTTTTCAGC
ATTTCTTCGTCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAACTTGTTGCGAATCTATTTCAGATGGCCCGTGATTCTGCACCTTCTATCATATTCATCGATGAAATAGATTCTTTATGTGGAACACGCGGAGAAAGTAATGAGAGCGAGGCTTCTCGGCGAATAAAAACTGAACTTCTTGTACAGATGCAGGG
TGTAGGAAACAATGACGATAAAGTTCTTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTAGGCGTCGGTTTGACAAACGAATTTACATTCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGAC
GCAAGACAGAGGGCTTTTCTGGTTCTGATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTTCAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCG
GCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTCACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATGAATTTGTTCGATCAAATTTCACAATTTTTTATGCAACAC
AGATTGTTATCTACTAATTTGCTGAACTTCTCAAATTTTAGAATGTATTTGTAACTTGCAGTTCCAATTCTGTGTTTCTGCAATTCCAATTTTCTTTGTAATATATCATCAGTGCATACATAGAATGTCATATTTCTACAAAGTTGTATGATCTTGACGGATAATGTAGTTGGTAATTTTTGACATTTACATAATTACTA
AGTCACACCTTAATGTTTTAC
>TRINITY_DN118612_c0_g2_i3 from sample A1 / Example unspliced isoform:ATTGCATAATAGAGAGTCGGAGTGCATATAGCTGCGAGCTATCAAAAGTTAAATCTCTCAGGCAAACTCATTCAATTGATCGTCTTCTGACGAGTCAAGCTGGAAGAATCTTATGCGGCCCATCTTTATTATTCAAGGTGATCAAGTACAGCGGAAATCCTTTCATATTCATTGAAACCCCATGCGGTCACCTCTTTTAT
TGTATTCAAAGAAATTCAGAGGGTATTGCTGAGATGGGTAGCTTGGGGTTTTGATTGTCATAGAGTGAGGCGTCGTGGGCACTTTGGTTTCATAGGCTTATGCACTGGAAACTTAGTAGGGCTATTTGTCTGATTGGAATTTCCCTGTTCTTCATGTACTCTGCTCTACAGGGCGAAACACCCAGTGATTATACACATAA
GAAGTAGTAGCAATAATGTATAGCAATTTCAAGGAGCAGGCAATAGAGTATGTTAGACAGGCAGTGCAAGAGGATAATGCAGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAACGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAAAAGAACCCCAAGATTAAAGAGGCCATTACACAAAAGTTTACTGAGTA
TTTGCGAAGGGCGGAGGAGATTCGTGCCGTGTTAGATGACGGAGGCAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCTGTTGTGACCAGGGCGAAGACTAAACCCGGCAACAAGGATGGGGACGGAGATGGAGAGGATCCTGAACAATCGAAATTGCGTGCGGGCCTCAATTCAGCTATTATTCGCGAGAAGCCTAACG
TGAAATGGAGTGATGTTGCAGGGCTTGAAAGTGCCAAACAGGCTTTGCAAGAGGCGGTTATACTTCCTGTAAAGTTTCCCCAATTTTTCACAGGGAGGCGAAAGCCCTGGAAAGCTTTTCTTTTGTATGGACCTCCTGGAACTGGAAAGTCATACCTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACGTTTTTCAGC
ATTTCTTCGTCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAACTTGTTGCGAATCTATTTCAGATGGCCCGTGATTCTGCACCTTCTATCATATTCATCGATGAAATAGATTCTTTATGTGGAACACGCGGAGAAAGTAATGAGAGCGAGGCTTCTCGGCGAATAAAAACTGAACTTCTTGTACAGATGCAGGG
TGTAGGAAACAATGACGATAAAGTTCTTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTAGGCGTCGGTTTGACAAACGAATTTACATTCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGAC
GCAAGACAGAGGGCTTTTCTGGTTCTGATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTTCAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCG
GCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTCACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATGgtatttgtaattttttgataaccatattagtacttacaa
gaaatatgtgccaagctttcactattgctatgtcaatagtagttgattttatgattataatctcttgcttgtatggtctgcagAATTTGTTCGATCAAATTTCACAATTTTTTATGCAACACAGATTGTTATCTACTAATTTGCTGAACTTCTCAAATTTTAGAATGTATTTGTAACTTGCAGTTCCAATTCTGTGTTTC
TGCAATTCCAATTTTCTTTGTAATATATCATCAGTGCATACATAGAATGTCATATTTCTACAAAGTTGTATGATCTTGACGGATAATGTAGTTGGTAATTTTTGACATTTACATAATTACTAAGTCACACCTTAATGTTTTAC
Intron 5 GTATTTGTAA ... CATGAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 92.96 | 5 | 66 | 1 |
| A2 | 88.24 | 6 | 45 | 0 |
| A3 | 86.15 | 9 | 56 | 0 |
| A4 | 81.08 | 7 | 30 | 1 |
| A5 | 69.23 | 12 | 27 | 2 |
| A6 | 89.21 | 67 | 554 | 8 |
| A7 | 84.81 | 98 | 547 | 14 |
| A8 | 84.75 | 138 | 767 | 14 |
| A9 | 87.9 | 76 | 552 | 7 |
| A10 | 91.24 | 34 | 354 | 1 |
>TRINITY_DN42425_c0_g2_i10 from sample A9 / Example spliced isoformGTTTTGGTATTGCATAATAGAGAGTCGGAGTGCATATAGCTGCGAGCTATCAAAAGTTAAATCTCTCAGGCAAACTCATTCAATTGATCGTCTTCTGACGTAAGCATCATTCGTCATTCCGTTCCAGTGGATGGATTCTCTTTCCTTACCCTTGATGTGAAATACTCATTGGTTGCGTATTCCATGCCCATTTTGCTTCT
TGCTTTTTTCAGGAGTCAAGCTGGAAGAATCTTATGCGGCCCATCTTTATTATTCAAGGTGATCAAGTACAGCGGAAATCCTTTCATATTCATTGAAACCCCATGCGGTCACCTCTTTTATTGTATTCAAAGAAATTCAGAGGGTATTGCTGAGATGGGTAGCTTGGGGTTTTGATTGTCATAGAGTGAGGCGTCGTGGG
CACTTTGGTTTCATAGGCTTATGCACTGGAAACTTAGTAGGGCTATTTGTCTGATTGGAATTTCCCTGTTCTTCATGTACTCTGCTCTACAGGGCGAAACACCCAGTGATTATACACATAAGAACTAGTAGCAATAATGTATAGCAATTTCAAGGAGCAGGCAATAGAGTATGTTAGACAGGCAGTGCAAGAGGATAATG
CAGGGAATTATGCCAAGGCCTTTCCTCTTTACATGAACGCCCTTGAATACTTCAAAACTCATCTGAAGTATGAAAAGAACCCCAAGATTAAAGAGGCCATTACACAAAAGTTTACTGAGTATTTGCGAAGGGCGGAGGAGATTCGTGCCGTGTTAGATGACGGAGGCAGTGCAGGGCCTGCTGCAAATGGTGATGCAGCT
GTTGTGACCAGGGCGAAGACCAAACCCGGCAACAAGGATGGGGACGGAGATGGAGAGGATCCTGAACAATCGAAATTGCGTGCGGGCCTCAATTCAGCTATTATTCGCGAGAAGCCTAACGTGAAATGGAGTGATGTTGCAGGGCTTGAAAGTGCCAAACAGGCTTTGCAAGAGGCGGTTATACTTCCTGTAAAGTTTCC
CCAATTTTTCACAGGGAGGCGAAAGCCCTGGAAAGCTTTTCTTTTGTATGGACCTCCTGGAACTGGAAAGTCATACCTGGCAAAGGCTGTTGCAACTGAAGCAGATTCAACGTTTTTCAGCATTTCTTCGTCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAGAAACTTGTTGCGAATCTATTTCAGATGGCCCGTG
ATTCTGCACCTTCTATCATATTCATCGATGAAATAGATTCTTTATGTGGAACACGCGGAGAAAGTAATGAGAGCGAGGCTTCTCGGCGAATAAAAACTGAACTTCTTGTACAGATGCAGGGTGTAGGAAACAATGACGATAAAGTTCTTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTAGGCGT
CGGTTTGACAAACGAATTTACATTCCGCTACCAGAGGTCAATGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGACGCAAGACAGAGGGCTTTTCTGGTTCTGATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCA
AGATGCCATGTTCTTCAAAAAGTTTTCAACTGAGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCGGCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAA
GGGACCTTGAGGTGCATGAGAGATTCACCAAAGAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATGGAAAAGGGGCTCTAGACTTTCGGGTACAAATGGTTTCATTGCAACCATGTTCTTGAATCTGGTGCTATACTTTTTACAAGAAAAATCTCACCTAGTATGGGTTAAAAACACGAGGGAC
ATTGTAAGAAATTGTTCTGAGTGCAATGTTCAGGAAGCTCAATCAAAATAATGTACATCTTTGTGGTGATCATTGCATTTCACTCCACTTTATTTCTCATTTAATGGCTTGGTCACTGTGGATTGATGTCTGCCACTTTTCATGCAGAATGATAGTTTATTGATGACCTTGTTGACATTAGTATATTAGGTGAGTTAAGT
TGTTTACTTTAGAGGGCAATGCATATCATCTATGTCTTCTGCACCTAATGTAGCCACCTTGAGGAAATATCCAAATTTGTGGTAAACCTTTTATTGTTTCTTAAAGGATAAATTTGTATCAAACGATGTTTTGGGTTCAAAGCTGCAAGTTGTTGTAACATATTCTTGCAAGCTCATATTGATGAGATCAAGCCTGTCTA
AAAGGAGAGTTTTTAGTTGGAATATCAAAGATCTATGAGGACATTTTTTCCCCCAAACATCATTGGATTTGTTTGTCAAAAATGATGAAATTTATCTTAGAGATGAATGGATTGCATGATACCTTG
>TRINITY_DN42425_c0_g2_i14 from sample A9 / Example unspliced isoform:ATTATTGTGCTGGAAGGAATCTAAATTCTAATGTTTTAAATAACACGTATTTTACGCTTGTCAGTACTTTTGACGGCATTTAGGTTGAGAATGTTGTGTAAATGAAATATCGTTGGATATCTGATGTGTTTATTCATTCCATGAAAATAAATGCTTTAATTCATCACCACAAAGCTATAATGCCAATGCAGTGGATTGTG
AATTATTTCACGTGGAACAATGTCGTTTATGTCATGTAAAGAATGCTTTTTAACTTTTTATGCAGTTTTGCAGTTTCCCTTGTGCAGGGTGTAGGAAACAATGACGATAAAGTTCTTGTTCTGGCTGCCACCAACACTCCATATGCATTGGATCAGGCAATTAGGCGTCGGTTTGACAAACGAATTTACATTCCGCTACC
AGAGGTCAATGCAAGGCAGCATATGTTCAAGGTCCATTTAGGTGATACACCCCACAACTTAACTGAGAGTGATTTTGAGGAACTGGGACGCAAGACAGAGGGCTTTTCTGGTTCTGATATAGCTGTTTGTGTTAAAGATGTACTATTTGAGCCAGTTCGTAAAACTCAAGATGCCATGTTCTTCAAAAAGTTTTCAACTG
AGGAAGGGGAGATGTGGATGCCATGTGGTCCCAGGCAAGCTGGTGCTGTGCAGACTACTATGCAAGAACTTGCAGCAGAAGGTCTAGCGGCCAAGATTCTGCCACCACCAATTGCAAAAGCAGATTTTGATAAAGTTCTCGCGAGGCAAAGGCCAACTGTTAGCAAAAGGGACCTTGAGGTGCATGAGAGATTCACCAAA
GAGTTTGGCGAAGATGGCTGATAAATATCAGTCATGATGGTCCATGAATGgtatttgtaattttttgataaccatattagtacttacaagaaatatgtgccaagctttcactattgctatgtcaatagtagttgattttatgattataatctcttgcttgtatggtctgcagaatttgttcgatcaaatttcacaatttt
ttatgcaacacagattgttatctactaatttgctgaacttctcaaattttagaatgtatttgtaacttgcagttccaattctgtgtttctgcaattccaattttcttcgtaatatatcatcagtgcatacatagaatgtcatatttctacaaagttgtatgatcttgacggataatgtagttggtaattattgacattta
cataattactaagtcacaccttaatgttttacgactatattcaatgcttgtgattcttgaatcttgtttttccaacatgaagcagGAAAAGGGGCTCTAGACTTTCGGGTACAAATGGTTTCATTGCAACCATGTTCTTGAATCTGGTGCTATACTTTTTACAAGAAAAATCTCACCTAGTATGGGTTAAAAACACGAGG
GACATTGTAAGAAATTGTTCTGAGTGCAATGTTCAGGAAGCTCAATCAAAATAATGTACATCTTTGTGGTGATCATTGCATTTCACTCCACTTTATTTCTCATTTAATGGCTTGGTCACTGTGGATTGATG