sp|Q29PU2|SAU76_ARATH ----> Auxin-responsive protein SAUR76

Intron 1 GTAACTATGT ... AGGGATTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75	1	0	3
A2	60	2	0	3
A3	76.47	4	1	13
A4	63.16	7	0	12
A5	50	4	0	4
A6	63.57	51	12	89
A7	56.69	30.6	1	40
A8	68.18	14	2	30
A9	63.44	34	2	59
A10	61.19	26	2	41

>TRINITY_DN40017_c0_g1_i3 from sample A6 / Example spliced isoform

CGTCTTCCAGCAGGGGCGGTTAAGGATTAACCACCGGGCGTCTTTCTTTAACCACGCGGAGGGTAACAAAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATT
TGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGTACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGGTAAGGGATTGCTTAGGGTTTGTGTTATGTACTTGTTCTAATCCTTGAATATTGTAAAGTCTA
TATAAAATCATAGTTTATGATTATTATCGCAGCTACATTTGTAATGATCTCGGTAACGTTCATATATTCATTTGGATTGCATATGTCACTCGACATCCCAAATTGGTATTTTTTTGTTCAGTGGCCAACTTATATCGCAATAAATTACTTTGGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTG
AAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATGATGTAAATTAAGAAACAATGTAAAAGCATAGTCTCTCCTCGACAATATCTTGAATTTGAGAACGTTATCTTTAAATCTCATTTGGATTGCATATGGC

>TRINITY_DN40017_c0_g1_i2 from sample A6 / Example unspliced isoform:

CGTCTTCCAGCAGGGGCGGTTAAGGATTAACCACCGGGCGTCTTTCTTTAACCACGCGGAGGGTAACAAAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGgtaactatgttgtttcttgatttcaatttcttgcaacaaccaca
tttcttcattctcatatattctcctgttgagaggggatgagtctgtaacaaattattatgccgagggattcagGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATTTGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGT
ACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGGTAAGGGATTGCTTAGGGTTTGTGTTATGTACTTGTTCTAATCCTTGAATATTGTAAAGTCTATATAAAATCATAGTTTATGATTATTATCGCAGCTACATTTGTAATGATCTCGGTAACGTTCATATATTCATTTGGATTGCATA
TGTCACTCGACATCCCAAATTGGTATTTTTTTGTTCAGTGGCCAACTTATATCGCAATAAATTACTTTGGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTGAAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATGATGTAAATTAAGAAACAATGTAAAAGCATAGTCTCTCCTCGACAA
TATCTTGAATTTGAGAACGTTATCTTTAAATCTCATTTGGATTGCATATGGC

Intron 2 GTAAGGGATT ... TTTTGTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	47.74	13.6	14.4	10
A2	58	3	7.4	1
A3	38.64	9	8	4
A4	76.51	1	2.6	4
A5	54.9	5	8.6	4
A6	57.24	64.8	69	99
A7	55.95	30.4	37.2	41
A8	59.93	35	51.2	51.8
A9	59.42	32.8	50.2	46
A10	52.88	26.4	25.6	34

>TRINITY_DN40017_c0_g1_i6 from sample A6 / Example spliced isoform

CGTCTTCCAGCAGGGGCGGTTAAGGATTAACCACCGGGCGTCTTTCTTTAACCACGCGGAGGGTAACAAAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGGTAACTATGTTGTTTCTTGATTTCAATTTCTTGCAACAACCACA
TTTCTTCATTCTCATATATTCTCCTGTTGAGAGGGGATGAGTCTGTAACAAATTATTATGCCGAGGGATTCAGGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATTTGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGT
ACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGTGGCCAACTTATATCGCAATAAATTACTTTGGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTGAAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATGATGTAAATTAAGAAACAATGTAAAAGCAT
AGTCTCTCCTCGACAATATCTTGAATTTGAGAACGTTATCTTTAAATCTCATTTGGATTGCATATGGC

>TRINITY_DN40017_c0_g1_i4 from sample A6 / Example unspliced isoform:

CGTCTTCCAGCAGGGGCGGTTAAGGATTAACCACCGGGCGTCTTTCTTTAACCACGCGGAGGGTAACAAAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGGTAACTATGTTGTTTCTTGATTTCAATTTCTTGCAACAACCACA
TTTCTTCATTCTCATATATTCTCCTGTTGAGAGGGGATGAGTCTGTAACAAATTATTATGCCGAGGGATTCAGGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATTTGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGT
ACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGgtaagggattgcttagggtttgtgttatgtacttgttctaatccttgaatattgtaagtctatataaaatcatagtttatgattattatcgcagctacatttgtaatgatcatatattcatttggattgcatatgtcactcgacat
cccaaattggtatttttttgttcagTGGCCAACTTATATCGCAATAAATTACTTTGGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTGAAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATGATGTAAATTAAGAAACAATGTAAAAGCATAGTCTCTCCTCGACAATATCTTGAATTTG
AGAACGTTATTTTTAAACCTCATTTGGATTGCATATGGCAC

Intron 3 GTAAGGGATT ... TTTTGTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50.3	13.3	16	10
A2	60	3	8	1
A3	43.43	9.1	10	4
A4	77.78	1	3	4
A5	58.99	4.9	10	4
A6	59.69	62.5	78	99
A7	58.21	29.5	42	40
A8	62.46	33.4	57	51
A9	61.48	32.3	56	46
A10	55.99	25.4	30	34

>TRINITY_DN40017_c0_g1_i6 from sample A6 / Example spliced isoform

CGTCTTCCAGCAGGGGCGGTTAAGGATTAACCACCGGGCGTCTTTCTTTAACCACGCGGAGGGTAACAAAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGGTAACTATGTTGTTTCTTGATTTCAATTTCTTGCAACAACCACA
TTTCTTCATTCTCATATATTCTCCTGTTGAGAGGGGATGAGTCTGTAACAAATTATTATGCCGAGGGATTCAGGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATTTGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGT
ACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGTGGCCAACTTATATCGCAATAAATTACTTTGGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTGAAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATGATGTAAATTAAGAAACAATGTAAAAGCAT
AGTCTCTCCTCGACAATATCTTGAATTTGAGAACGTTATCTTTAAATCTCATTTGGATTGCATATGGC

>TRINITY_DN40017_c0_g1_i3 from sample A6 / Example unspliced isoform:

CGTCTTCCAGCAGGGGCGGTTAAGGATTAACCACCGGGCGTCTTTCTTTAACCACGCGGAGGGTAACAAAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATT
TGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGTACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGgtaagggattgcttagggtttgtgttatgtacttgttctaatccttgaatattgtaaagtcta
tataaaatcatagtttatgattattatcgcagctacatttgtaatgatctcggtaacgttcatatattcatttggattgcatatgtcactcgacatcccaaattggtatttttttgttcagTGGCCAACTTATATCGCAATAAATTACTTTGGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTG
AAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATGATGTAAATTAAGAAACAATGTAAAAGCATAGTCTCTCCTCGACAATATCTTGAATTTGAGAACGTTATCTTTAAATCTCATTTGGATTGCATATGGC

Intron 4 GTAAGGGATT ... ATTATCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	61.7	9	16	13
A2	64.71	3	8	3
A3	41.18	10	10	4
A4	62.5	3	3	7
A5	61.54	5	10	6
A6	67.39	45	78	108
A7	59.48	31	42	49
A8	66.29	30	57	61
A9	67.02	31	56	70
A10	55.17	26	30	34

>TRINITY_DN44023_c0_g1_i3 from sample A10 / Example spliced isoform

AAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGGTAACTATGTTGTTTCTTGATTTCAATTTCTTGCAACAACCACATTTCTTCATTCTCATATATTCTCCTGTTGAGAGGGGATGAGTCTGTAACAAATTATTATGCCGAGGGA
TTCAGGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATTTGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGTACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGCTACATTTGTAATG
ATCTCGGTAACGTTCATATATTCATTTGGATTGCATATGTCACTCGACATCCCAAATTGGTATTTTTTTGTTCAGTGGCCAACTTATATCGCAATAAATTACTTTGGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTGAAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATAATGTAAAT
TAAGAAACAATGTAAAAGCATAGTCTCTCCTCGACAATATCTTGAATTTGAGAACGTTATCTTTAAATCTCATTTGGATTGCATATGGCACTTGAGTTTTCTTTTTTCTTTTTAATATTAAATTTTTATAAAATTTAATTTGTCTTA

>TRINITY_DN44023_c0_g1_i1 from sample A10 / Example unspliced isoform:

AAAACAGGTTTTCTCTACTTAATCCAGCGAGAAAGCGAAATCCAACTATATAGTGCGTATAGTGAAAGAGATAGGCGAAATTTCTTAGGTAACTATGTTGTTTCTTGATTTCAATTTCTTGCAACAACCACATTTCTTCATTCTCATATATTCTCCTGTTGAGAGGGGATGAGTCTGTAACAAATTATTATGCCGAGGGA
TTCAGGGATGGCTTCTCAGTTTCCTGCGAGGTGGTGCTGTTCGAGCATTTGGTATGGATGTTGGAGAACACTGAACCAGAGGCCATTCGGAGTGACTCCAGCTTGGAGGAATTGGTCGAATTCTATGCTTGTACCTAATGCGGGCCAAGGTGTTCTGGATCAGCTCCAGCTTCGTTGCAGGCCGAGgtaagggattgctt
agggtttgtgttatgtacttgttctaatccttgaatattgtaaagtctatataaaatcatagtttatgattattatcgcagCTACATTTGTAATGATCTCGGTAACGTTCATATATTCATTTGGATTGCATATGTCACTCGACATCCCAAATTGGTATTTTTTTGTTCAGTGGCCAACTTATATCGCAATAAATTACTTT
GGGATGAAACAGTGGTCACGTGAAGTCTTTGTGTGGCCATTTCTGCTTGAAAGCTTTGAACAACGATCGGTAGTGGTTTTATTTATAATGTAAATTAAGAAACAATGTAAAAGCATAGTCTCTCCTCGACAATATCTTGAATTTGAGAACGTTATCTTTAAATCTCATTTGGATTGCATATGGCACTTGAGTTTTCTTTT
TTCTTTTTAATATTAAATTTTTATAAAATTTAATTTGTCTTA