sp|C0SQ89|CMT3_ORYSJ ----> DNA (cytosine-5)-methyltransferase CMT3
Intron 1 GCATGTTAAT ... TCTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.38 | 110 | 0 | 20 |
| A2 | 24.32 | 56 | 0 | 18 |
| A3 | 20.43 | 74 | 0 | 19 |
| A4 | 28.21 | 56 | 2 | 22 |
| A5 | 22.22 | 21 | 0 | 6 |
| A6 | 22.16 | 70.3 | 0 | 20 |
| A7 | 15.23 | 128 | 0 | 23 |
| A8 | 11.5 | 100 | 0 | 13 |
| A9 | 13.86 | 143 | 0 | 23 |
| A10 | 12.42 | 134 | 0 | 19 |
>TRINITY_DN38733_c0_g2_i3 from sample A7 / Example spliced isoformGGGGATAAGAGGATTCATGAGTGCCCTAAGAGGGCAAGTCTTAGACACCTAAAATGTTAAAACAAAGTGTTTGACCCGGTTGGATCGGGCCAAGCTAAGCTTAAAATTGCCGAGGAATACGATTAAGTAGATGAATAAGCAAACGATAAATATTTTTTTTCTTATTTATTTGACGAAAAAAACTGGCTTCCCGCGCTTGG
GTTTACTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGATTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCTGAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTC
ATTCCATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCAGACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAGTCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGC
TAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAG
CTCCTCTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGAT
GGAAAAGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATAT
TGTCAAAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTG
GGAGAAATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCT
GATGATTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATG
CAATGAATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACG
TGGATGTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGG
TATGCATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATAT
GGTTGCTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAG
CGTCCAAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAG
CCATTGATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAA
GCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGC
AGAGCTAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCCCAAA
AATTCTTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAATTTA
TTCATTTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGATGTGCATG
>TRINITY_DN38733_c0_g2_i5 from sample A7 / Example unspliced isoform:TGTGGGGAGCACTGCCAACAGAGgcatgttaattttgtgtttacgagactgatattagtgggatgagaagagccattttttatacttgtttttttgagttggtgttctgatactaccatttttcattccatctaatgcagAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAAT
GAATGGGAGCGTAATATGGTTGCTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATT
GTTACCATCTGCATTAGCGTCCAAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCT
TGCTGTCTTCTGGAAAGCCATTGATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGC
TTTCCTGATTATTACAAGCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGC
TATGGACGTGGGAGAGCAGAGCTAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAG
CCTTTTAATGTCCCAAAAATTCTTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATA
GGGGTGTGTTAAATTTATTCATTTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGATGTGCATG
Intron 2 GTACGGAGTC ... GTTCATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 14 | 4 |
| A2 | 100 | 0 | 7 | 4 |
| A3 | 100 | 0 | 10 | 1 |
| A4 | 100 | 0 | 4 | 0 |
| A5 | 100 | 0 | 3 | 0 |
| A6 | 95.92 | 2 | 47 | 15 |
| A7 | 97.92 | 1 | 47 | 8 |
| A8 | 89.9 | 10 | 89 | 26 |
| A9 | 97.78 | 1 | 44 | 8 |
| A10 | 100 | 0 | 40 | 5 |
>TRINITY_DN36237_c0_g2_i1 from sample A9 / Example spliced isoformGGAGAGCAGAGCTAGATGAATGGAGTGCTGAGCACAAGGATTTCCATGTTGGTTTATTCCAGGTGCTTTCTGTAAGATTTTTCTGATGTGAGATCTATTTTGAGTGGAAGGAAGGGCATTTGTTTTTGTGGAGGGTCTCATTTTTGGGGTTTGTTGATTTTTGGCTTATATGTTGGTGGTTTCACTAAGTTTTTTGCGAG
TGTGGAACCAAGGTTTCAGATCATCTATTTTTATTCAATTTCAGCAATTGGTTTGAGG
>TRINITY_DN36237_c0_g2_i4 from sample A9 / Example unspliced isoform:AGCTAAGCTTAAAATTGCCGAGGAATACGATTAAGTAGATGAAGAAGCAAACGATAAATATTTTTTTTCTTATTTATTTGACGAAAAAAACTGGCTTCCCGCGCTTGGGTTTACTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGA
TTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCTGAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTCATTCCATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCA
GACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAGTCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTAT
CGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCTCTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGT
GATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAAAGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGA
GGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCAAAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCAT
ATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGAAATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAAT
CTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGATTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGA
GACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATGAATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGA
GTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGATGTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAAC
CAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGCATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCG
AGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTGCTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTG
AACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCCAAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCT
AAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATTGATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGT
AGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGG
CCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGCTAGATgtacggagtcttacaaccattcatttattcagatccattttggatcactagtgtgcttatttttggagatcttttgcatgtt
catgtagGAATGGAGTGCTGAGCACAAGGATTTCCATGTTGGTTTATTCCAGGTGCTTTCTGTAAGATTTTTCTGATGTGAGATCTATTTTGAGTGGAAGGAAGGGCATTTGTTTTTGTGGAGGGTCTCATTTTTGGGGTTTGTTGATTTTTGGCTTATATGTTGGTGGTTTCACTAAGTTTTTTGCGAGTGTGGAACCA
AGGTTTCAGATCATCTATTTTTATTCAATTTCAGCAATTGGTTTGAGG
Intron 3 GCAAGTCTGG ... TTGGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.63 | 105 | 0 | 18 |
| A2 | 7.69 | 96 | 0 | 8 |
| A3 | 9.47 | 86 | 0 | 9 |
| A4 | 12.9 | 81 | 1 | 12 |
| A5 | 11.54 | 46 | 0 | 6 |
| A6 | 13.64 | 19 | 0 | 3 |
| A7 | 18.35 | 89 | 0 | 20 |
| A8 | 11.76 | 15 | 0 | 2 |
| A9 | 15.09 | 90 | 0 | 16 |
| A10 | 8.96 | 61 | 0 | 6 |
>TRINITY_DN98884_c0_g1_i7 from sample A4 / Example spliced isoformTGTAAATTTTCAACTATACCAAATTAGCCCTAATGCTGGACCGATTGATCATGCCCAAGGGGATAAGAGGATTCATGAGTGCCCTAAGAGGGCAAGTCTTAGACACCTAAAATGTTAAAACAAAGTGTTTGACCCGGTTGGATCGGGCCAAGCTAAGCTTAAAATTGCCGAGGAATACGATTAAGTAGATGAATAAGCAA
ACGATAAATATTTTTTTTCTTATTTATTTGACGAAAAAAACTGGCTTCCCGCGCTTGGGTTTACTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGATTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCT
GAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTCATTCCATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCAGACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAG
TCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGC
CTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCTCTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGC
TCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAAAGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTT
TCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCAAAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGAT
TCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGAAATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGC
TGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGATTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAG
GAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATGAATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGT
CTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGATGTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATA
TGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGCATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTC
TACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTGCTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAG
CAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCCAAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGA
GGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATTGATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGG
ATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAA
TTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGCTAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCA
CATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCCCAAAAATTCTTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGA
AGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAATTTATTCATTTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGA
TGTGCATGTATGGGTTTTGATGTTTATGCTAAACATTAGAGTTACTTGGTATTGTGTTCCTAGATAGATAGGTTTAGAAAATGTG
>TRINITY_DN98884_c0_g1_i5 from sample A4 / Example unspliced isoform:TACCTTCTATACTCTACCAGCAGgcaagtctggtgattaagagatgccttagtttgcaagtttagatggtttacatgctttaaccctaaggaaagtttgacgtggtgtgcttattggtttcagAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTT
TCTGGGAGAAATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTT
AGCTGATGATTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAA
AATGCAATGAATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGT
GACGTGGATGTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGG
ACGGTATGCATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTA
ATATGGTTGCTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCA
TTAGCGTCCAAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGG
AAAGCCATTGATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATT
ACAAGCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGA
GAGCAGAGCTAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCC
CAAAAATTCTTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAA
TTTATTCATTTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGATGTGCATGTATGGGTTTTGATGTTTATGCTAAACATTAGAGTTACTTGGTATTG
TGTTCCTAGATAGATAGGTTTAGAAAATGTG
Intron 4 GTAAGTGTTC ... AACATGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.59 | 162 | 16.3 | 42 |
| A2 | 25.18 | 104 | 7.1 | 35 |
| A3 | 25.81 | 92 | 6.9 | 32 |
| A4 | 14.08 | 102 | 5.9 | 16.7 |
| A5 | 20 | 72 | 7.3 | 18 |
| A6 | 26.32 | 56 | 2.6 | 20 |
| A7 | 24.66 | 168 | 10.3 | 55 |
| A8 | 25.58 | 64 | 3.4 | 22 |
| A9 | 28.22 | 145 | 10.9 | 57 |
| A10 | 24.28 | 184 | 8.3 | 59 |
>TRINITY_DN108905_c0_g1_i4 from sample A2 / Example spliced isoformCTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGATTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCTGAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTCATTCC
ATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCAGACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAGTCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAG
TCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCT
CTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAA
AGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCA
AAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGA
AATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGA
TTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATG
AATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGAT
GTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGC
ATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTG
CTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCC
AAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATT
GATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTC
ATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGC
TAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCCCAAAAATTC
TTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAATTTATTCAT
TTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGATGTGCT
>TRINITY_DN108905_c0_g1_i1 from sample A2 / Example unspliced isoform:GGGAGCCCATTGAAGGTTTAGGgtaagtgttccaagcacttttgtgccgttaatattatgaaattcgggtatgtcatctgagatttaaacttgtgaaacatgatagGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGATGTTATTTGTGGCGGC
CCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGCATTGAGTCGTCTGGT
TCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTGCTTATGATGAGAATC
ATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCCAAGAAGGCATCGCAA
AAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATTGATTCCAGATTATGC
CATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTCATGGAAGTGTGAAGG
AAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGCTAGATGTATTGTAAT
CCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCCCAAAAATTCTTATGTCCTCAGTCT
TTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAATTTATTCATTTTTTGGAGGGAATT
TCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGATGTGCT
Intron 5 GTATGAGCAA ... CTATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.49 | 145 | 17 | 10.4 |
| A2 | 14.45 | 148 | 25 | 10.1 |
| A3 | 10.26 | 140 | 16 | 12.2 |
| A4 | 9.09 | 140 | 14 | 13 |
| A5 | 11.11 | 64 | 8 | 6 |
| A6 | 7.93 | 325 | 28 | 22 |
| A7 | 5.56 | 459 | 27 | 34.4 |
| A8 | 8.93 | 571 | 56 | 46.1 |
| A9 | 7.38 | 427 | 34 | 39.4 |
| A10 | 8.16 | 450 | 40 | 28.7 |
>TRINITY_DN108905_c0_g1_i4 from sample A2 / Example spliced isoformCTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGATTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCTGAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTCATTCC
ATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCAGACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAGTCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAG
TCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCT
CTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAA
AGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCA
AAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGA
AATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGA
TTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATG
AATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGAT
GTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGC
ATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTG
CTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCC
AAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATT
GATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTC
ATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGC
TAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCCCAAAAATTC
TTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAATTTATTCAT
TTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGATGTGCT
>TRINITY_DN108905_c0_g1_i2 from sample A2 / Example unspliced isoform:CTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGATTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCTGAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTCATTCC
ATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCAGACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAGTCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAG
TCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCT
CTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAA
AGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCA
AAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGA
AATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGA
TTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATG
AATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGAT
GTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGC
ATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTG
CTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCC
AAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATT
GgtatgagcaagtcttgaaactttatgctggatatgaaactataagcgcatcttgtactaagagtatttttatacatgctttctatatgcagATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCAC
AATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGA
TGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGCTAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAAT
AGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCCCAAAAATTCTTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAG
GGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAATTTATTCATTTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTT
GTTCAAGTCTTTCACTGCTTATAACTGATGTGCT
Intron 6 GTGAGTATCT ... CTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.79 | 150 | 0 | 22 |
| A2 | 12.66 | 138 | 0 | 20 |
| A3 | 9.52 | 133 | 0 | 14 |
| A4 | 8.92 | 143 | 0 | 14 |
| A5 | 17.24 | 72 | 5 | 15 |
| A6 | 10.03 | 332 | 0 | 37 |
| A7 | 8.61 | 467 | 0 | 44 |
| A8 | 6.79 | 549 | 0 | 40 |
| A9 | 9.05 | 442 | 1 | 44 |
| A10 | 9.48 | 449 | 0 | 47 |
>TRINITY_DN103332_c0_g1_i4 from sample A5 / Example spliced isoformGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTG
GCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCTCTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGT
GTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAAAGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGG
ATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCAAAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGT
GATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGAAATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAA
GCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGATTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGG
AAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATGAATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATC
AAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGATGTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGT
AGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGCATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAG
TTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTGCTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCG
AAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCCAAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTT
GGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATTGATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTC
GTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGAC
AACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGCTAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTACGGAGTCTTACAACCATTCATTTATTCAGATCCATTTTGGATCACTAGTGTGCTTATTTTTGGAGATCTTTTGCATGTTCATGTAGGAATGGAGT
>TRINITY_DN103332_c0_g1_i5 from sample A5 / Example unspliced isoform:GCCGCTCCTTAAAgtgagtatcttgcatttatttctaaagtgttgtcatatgctttttcttgattgaataataatggtcctcctttttgcagGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTAT
TCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTCATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTG
ACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGCTAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTACGGAGTCTTACAACCATTCATTTATTCAGATCCATTTTGGATCACTAGTGTGCTTATTTTTGGAGATCTTTTGCATGTTCATGTAGGAATGGAGT
Intron 7 GTTTGTGAGA ... CTGGTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.29 | 42 | 12 | 2 |
| A2 | 21.82 | 36 | 10 | 2 |
| A3 | 19.37 | 33.3 | 8 | 0 |
| A4 | 14.53 | 23.7 | 4 | 0 |
| A5 | 33.33 | 14 | 7 | 0 |
| A6 | 18.93 | 90.3 | 21 | 0 |
| A7 | 22.09 | 138 | 39 | 0 |
| A8 | 15.26 | 111.7 | 20 | 0 |
| A9 | 19.21 | 118 | 28 | 0 |
| A10 | 13.99 | 117.3 | 19 | 0 |
>TRINITY_DN108905_c0_g1_i4 from sample A2 / Example spliced isoformCTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGATTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCTGAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTCATTCC
ATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCAGACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAGTCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAG
TCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCT
CTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAA
AGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCA
AAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGA
AATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGA
TTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATG
AATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGAT
GTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGC
ATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTG
CTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCC
AAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGGGTGCAAACTTCAGGGATCTTCCCGGTGTGATTATTAGGGAGGACAATGTTGTGGAGTTGGATACCTCAATGGAGAGGATCTTGCTGTCTTCTGGAAAGCCATT
GATTCCAGATTATGCCATAAGTTTTGTGAAAGGCCGCTCCTTAAAGCCCTTTGGTCGTTTATGGTGGGATGAAACCGTGCCAACTGTAGTCACCAGGGCCGAGCCTCACAATCAGGCCATTCTGCATCCTGAGCAGGATCGGGTCCTATCTATTCGTGAGAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAGCTTC
ATGGAAGTGTGAAGGAAAGATATATCCAAGTAGGAAATGCCGTGGCAATACCTGTTGCAAGGGCTTTGGGCTTTGCCCTGGGAATGGCCATACAGAAATTGTGCACTGATGAACCAGTGGTGAAGCTTCCTGTCAAATTCCCCAATTGCTTTGACAACCAGCAGACTGAAGATGGAGCTATGGACGTGGGAGAGCAGAGC
TAGATGTATTGTAATCCATTCTTGCTCTGGGCCCTTCTGTTAGCTGGTGCTTCTTAACCTTCCCCAGCATCTACTTGAGGTCCAATTTTTGTGGCTGAGAAGTCAAAATAGAAGGCTGCCAAGTAGACTAGCCTTCACATCTGCATGCATTTGCAGCTTCCATCCCATGGGCAAATAGCCTTTTAATGTCCCAAAAATTC
TTATGTCCTCAGTCTTTACTCCACATTTCATAAACTATTTTCTTATTGTAACTGTCATTCTGTTCTGCAATTGATTCATTCTCAGAGGAGGACATTTATTTATGAAAAGGGTGGTCCATGCTATTGACGTATATGGAAGCATGGCCTGTGTACTGATCTTGTCTTAACTTAAAGAATAGGGGTGTGTTAAATTTATTCAT
TTTTTGGAGGGAATTTCTTATAGTTCTTAACTAAATGTGCCTTAAATTGCCATTGCAATTCAACTTTGCCATGTTTGAGTGAATTATGTATTATACCAATTCAGATTTTGTTCAAGTCTTTCACTGCTTATAACTGATGTGCT
>TRINITY_DN108905_c0_g1_i3 from sample A2 / Example unspliced isoform:CTTTGAAAGTGGAAACACAGAGCTTTCCCTCCCGCTATAATAGGCTGAGAGCGAGTCGTAGAAGACCACATTACAGAGGACTGGGGATTTTGAGAATTGAGGATTGAGCTCACAAATCTATTCGTTTCAATCCCTCTGAGCAGCTCAAATCCTCGGGGAAGAGGAGGGGAGGAAAGGGGGGCCTCATTTTTTTTCATTCC
ATTCCGCTGTCACAGAGAGCTTAACGCCATGACTCCAGCGAAGCGAACGAGGAGTCAGACCGGAGCAGTCGAAACCCCAACCGTCCAGACTGGGAGTGCCATGAAAAGACAGAAACCCGTAGGGAATGAAATCTCAGTCCCTAATGGAAATGGCAGCAACGTGAAAGAAAATGGGCCCTTGTCGGCAGCTAAAGCTAGAG
TCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGTCTGTGGCCAAAACTAGCAACGTGAAAGAAAATGGGTCCTTATCGGCAGCTAAAGCTAGAGTCAGTACTGCTAAGTTGGCCGGAGAAGATCGCCTCTCCGGAGGGCCTGTGGCCAAAACTAAGTTGCCTGGAGAAGATCGCCTGCTCGGAGCTCCT
CTGCCCAAAGCAGAGGCGCAGCGCAGGTGGCCTTTGCGCTACGAGAAGAAGAAAAATGGACAGAACAAGTCCAATGGAAGTACTGGTGATGAAGAGGAGCAAGCGGTTTTGAATGTGAAAGCTCATTATTTGCGAGCTCAAGTGGATGGAGAGGTGTATAATCTGGGTGACTGTGCTTCTGTCAAGGGTGAAGATGGAAA
AGCAGATTATATTGGAAGGATTCTTGAATTTTTTGAGGTAACTAATGGAGATCAATATTTTACGACTCAATGGTTTTACAGAGCAGAGGATACGGCCATTAAAACGGAAGCTTCATTTCATGATAAAAAGCGGGTTTTCTACTCTGAAATCAAGGATAACAACTTGCTTGAGTGCATCACCTCAAAGATCAATATTGTCA
AAGTACCTCCAATGTTAAAATCTGAGGAAAAGCGACGTTCAGTTCCACCTTGTGATTATTACTATGACATGGGTTACAATTTGGCATATACTACCTTCTATACTCTACCAGCAGAAAATGTAGCTGCAAGCAGTGATTCAACATCAACAGTGTGTGATGAGTCTGAAAACAAGGTCGACAATGATACATTTTCTGGGAGA
AATGATGGAGTCAAATCAGAGCTTACCTTACTAGATTTGTACTCTGGTTGTGGTGGGATGTCAACTGGCTTATGTTTTGGCGCCAATCTTTCCGGTGTACGCCTTGTTACGAAATGGGCCGTGGATCTGAATGAAGCTGCCTGTAAGAGCTTGAAGCAAAATCATCCAGAAACAGAGGTTCGCAATGAGTTAGCTGATGA
TTTCTTGGAATTGCTCAAGAGATGGCTGGATCTTTGCCAAAGATTCTGTGCGCCAGAAAATGCAAAAAGTAATCCGAAGGCAGCAGAGACAAGAAATCAAGTAATAGAAATACCAGATGACGATTCTGGTCTCTCAGGAGATGAATTTGAAGTGGAAAGCTTGATTGGAATTCGCTTTAAACAGCCTACAAAATGCAATG
AATCTGGATTGCCAAGCAACGAATCTGGATTGCCAAGCAACGAATCTGGATTGCAATTTAAGGTGCACTGGAAAGGTTATGGTAAGAGTGAGGATAGTTGGGAGCCCATTGAAGGTTTAGGGGACTGTGAGGAAAGTCTCAAAGAGTTTGTGATCAAGGGTGCAAAAGCAAAGATTTTGCCTCTACCTGGTGACGTGGAT
GTTATTTGTGGCGGCCCCCCTTGCCAAGGAGCTAGCGGGTTCAACAGATTCAGAAACTCCGCAGCTCCTTTGGAAGATTCTAAGAACCAACAGATGATTGTATACATGGACATTGTAGACTTCTTAAAGCCTAGATATGTTTTGATGGAGAATGTAGTTGACATTCTTAAATTTGCTGGAGGCGTCCTTGGACGGTATGC
ATTGAGTCGTCTGGTTCACATGAGTTATCAAGCCAAACTTGGCATGATGGTTGCTGGGTGCTATGGTCTACCACAATTTCGCATGCGAGTATTTTTGTGGGGAGCACTGCCAACAGAGAAGCTGCCGCAGTATCCTCTACCAACTCATGACGTAGTTCAGCGAGGTGGTGTTCCAAATGAATGGGAGCGTAATATGGTTG
CTTATGATGAGAATCATAGTGTCAAACTTGAAAAAGCACTTATTCTTGGTGATGCTATTTCTGACCTTCCAGAGATTGCAAATTCTGAACAGAGGGATGAAATGCAATATGGGAAAGTTCCTCGTACTGAATTTCAGCAATATATTAGAATGCCGAAAGAAGTTATGAACGGCCGATTGTTACCATCTGCATTAGCGTCC
AAGAAGGCATCGCAAAAGGCAATTCTTTATGATCATCGTCCACTCCAACTCAATGAAGATGATTACCAGCGAGTTTGCAGGATTCCTAAGAGAAAGgtttgtgagattggtagctgtgcgtatttgaagggatttgctagagggaaaaacacttatcgcatgtagcttgcttggcttttatattatttcttttctggtgt
cagGGTGCAAACTTCA