sp|Q9M9G6|CTF64_ARATH ----> Cleavage stimulating factor 64
Intron 1 GCAAGATAGA ... GGTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.41 | 29.6 | 25 | 24 |
| A2 | 46.37 | 19.1 | 16 | 15 |
| A3 | 38.63 | 29.4 | 14 | 23 |
| A4 | 46.41 | 21.6 | 23 | 14 |
| A5 | 34.12 | 27.1 | 17 | 11 |
| A6 | 54.36 | 61.7 | 61 | 85 |
| A7 | 44.15 | 108.7 | 72 | 99 |
| A8 | 45.4 | 74.9 | 52 | 72 |
| A9 | 50.68 | 87.1 | 79 | 99 |
| A10 | 50.79 | 68.6 | 71 | 70 |
>TRINITY_DN122383_c1_g1_i10 from sample A1 / Example spliced isoformATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAG
TAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAAGTACGATTCCCCTCCGGTGTCAATAATTGTTGATAAATTCTTCATCCTGGGGATAAAATCCTCATGCTAGAATCCGATGTTACTTAATACTTACGTCCATCCCGTGGTGAACAGAGCCATAAATCAC
AGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATC
ATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTATGGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGATCAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGGTCGAGGTGGACCTGGTC
TGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGCAATCCCTGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAACTAATGTTGGAGGCAATGAT
CCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTTATGAGTTCCTGAATGAGATGAAGGCCCTAGCTCAACAAAATCAACAGCAGGCTCGCCACATTTTGATTTTGCATCCGCAACTGCCAAAAGCTATTTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCTAATTTCCGCTCAGA
TTCTGTGATACAGTCTGGTCAACAGGGTCAGATACGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATTCGGCAGTTAATGCAACCACCTCC
AGTACAGCCTTCAGCTCAGGTTATCCAACCATCTCAATCTCAAGTGCCACAGACAGTATTGCAGTCTCTACAATCGGTATCTCAAAGTTTGAATTTGCCAGTACAACCTCCAATGCAGTCTCCTCCACGAACTGTACAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCAGGTCTGG
GGAGTCTACATCAACCACCACTACCACAACAACCAAGGCCAGTGTTGCAGTCACTTCCACCTGCTGGTCAGGTGCAAAATCATCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCAACACAAGCACCTTTTCAGTCAGGAAACCATCCTCAGAATACCTCGGGGATTCCTTTCCAGAAACAC
ACCCAACCTCCACTGCCCAATCTACCTCCTCCACAGCAGTCTTATCAGATGGGTTCTGGTAGTACAGCTGGCACAGCTCTACATGTAGGTTCTGATGCAATTCACTCAAGCTCAGGCCCAAACAACTTTCCAAGCAATGCTGGTCTCATAAATTTAGGCATTGAGGGTGCCCTCCA
>TRINITY_DN122383_c1_g1_i35 from sample A1 / Example unspliced isoform:ATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGGTACGATTCCCCTCCGGTGTCAATAATTGTTGATAAATTCTTCATCCTGGGGATAAAATCCTCA
TGCTAGAATCCGATGTTACTTAATACTTACGTCCATCCCGTGGTGAACAGAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGgcaagatagaaagccggcatccatagcagttgcattcattttttattccacgggg
ggcaggcatatggatattttggttaggcagattaggttgtcaatccggtgaaaatgcactagcaatcttatatcttttgatggtttggcagAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACC
CGTTGTATCATTTCGGTGCGTTGAATTGCATTATAAAGGATAACTTGTTTCAGTTTACGTTTTGCTTGTCACTCAAAAGATGGATTCCTTGTCCACTTTCTAATAAAATAGCTGTCAGTTTATTAACAAGATAAGGGTGCCTTTGTGTGATGTTTTCCAATTTATTTGCATAAGCCTTGTGCATTCTAA
Intron 2 GTTCGTGTTA ... ATTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.5 | 48.9 | 74.9 | 61.2 |
| A2 | 55.01 | 28 | 34.2 | 33.8 |
| A3 | 67.76 | 20.9 | 43.9 | 38.5 |
| A4 | 62.77 | 18.8 | 31.7 | 27.4 |
| A5 | 51.73 | 25 | 26.8 | 49.1 |
| A6 | 63.83 | 17.5 | 30.9 | 24.6 |
| A7 | 59.26 | 63 | 91.7 | 95.6 |
| A8 | 62.46 | 58.3 | 97 | 66.7 |
| A9 | 61.07 | 59.1 | 92.7 | 53.6 |
| A10 | 60.79 | 30.4 | 47.1 | 40 |
>TRINITY_DN123215_c3_g1_i3 from sample A2 / Example spliced isoformTGTGGACTAAAGAGGCACAGATACTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGTGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGG
TCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTCCAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAG
CCAAC
>TRINITY_DN123215_c3_g1_i13 from sample A2 / Example unspliced isoform:GTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGTGAGTTATTGTAGTATACTATACAGATTAAGAGCCAAAGGGTATCCTTGCTTGGCTATGGATGCTTTTTGGCATTGCAAAACAAA
GTTGGCCTTGAAGAATCCATACTGTGGGGTTAGGGTCGATGCAGATTCCACAACTGTATTTTGAAAAGGTGAATGAGGCACAGATAATGCTTGCATGGTGTCTCCACAAATGGCACAGATAATGGTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGAGTCAGA
TATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGTAGCACGGTCAGACCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGGCACAGATAA
TGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGCCAGATTCTCTGAGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTCCAATG
CAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAgttcgtgttatctaaccatctcaatctcaagtgccacagatattattgcagtctctacaataggcatctcaaagtttgagtttggcagtacaaactccaatgtagtctccacacactgcgcagcctcaagttcctcctattctttcagGTCAGCCTCAACAACC
TTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAAT
TCAAACCGGGAAGTAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAA
Intron 3 GTCTGTGTTT ... GAAAATTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 75 | 21 | 29 |
| A2 | 33.33 | 45 | 17 | 28 |
| A3 | 28.75 | 57 | 21 | 25 |
| A4 | 30 | 35 | 14 | 16 |
| A5 | 21.74 | 18 | 6 | 4 |
| A6 | 21.05 | 15 | 3 | 5 |
| A7 | 26.76 | 26 | 13 | 6 |
| A8 | 32.56 | 29 | 14 | 14 |
| A9 | 17.46 | 26 | 6 | 5 |
| A10 | 21.57 | 20 | 5 | 6 |
>TRINITY_DN123215_c3_g1_i13 from sample A2 / Example spliced isoformGTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGTGAGTTATTGTAGTATACTATACAGATTAAGAGCCAAAGGGTATCCTTGCTTGGCTATGGATGCTTTTTGGCATTGCAAAACAAA
GTTGGCCTTGAAGAATCCATACTGTGGGGTTAGGGTCGATGCAGATTCCACAACTGTATTTTGAAAAGGTGAATGAGGCACAGATAATGCTTGCATGGTGTCTCCACAAATGGCACAGATAATGGTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGAGTCAGA
TATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGTAGCACGGTCAGACCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGGCACAGATAA
TGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGCCAGATTCTCTGAGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTCCAATG
CAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTTCGTGTTATCTAACCATCTCAATCTCAAGTGCCACAGATATTATTGCAGTCTCTACAATAGGCATCTCAAAGTTTGAGTTTGGCAGTACAAACTCCAATGTAGTCTCCACACACTGCGCAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACC
TTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAAT
TCAAACCGGGAAGTAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAA
>TRINITY_DN123215_c3_g1_i14 from sample A2 / Example unspliced isoform:GTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGTGAGTTATTGTAGTATACTATACAGATTAAGAGCCAAAGGGTATCCTTGCTTGGCTATGGATGCTTTTTGGCATTGCAAAACAAA
gtctgtgtttgttatttttgttggtttttgctatttgttgtttgtatcctttgctattggtgttttctgtttttctactatggtgttatatttttggtttgatattttgtttttcttatctttgtgaataatttttgttttggattcaattggtggaaaattaagGTTGGCCTTGAAGAATCCATACTGTGGGGTTAGGG
TCGATGCAGATTCCACAACTGTATTTTGAAAAGGTGAATGAGGCACAGATAATGCTTGCATGGTGTCTCCACAAATGGCACAGATAATGGTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAG
CAAGCCCAGATGCAGGTTGGGTAGCACGGTCAGACCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATGTTTCCCAAT
TTCCACCCAGATTTTGTGAGATAGTTTGCCAGATTCTCTGAGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTCCAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTC
AGTTCGTGTTATCTAACCATCTCAATCTCAAGTGCCACAGATATTATTGCAGTCTCTACAATAGGCATCTCAAAGTTTGAGTTTGGCAGTACAAACTCCAATGTAGTCTCCACACACTGCGCAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAAC
TGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAGTAAGCCCAGATGCAAGGTCAGG
CCCAGCTTTTACAGCAATCTCAACCCCAAAA
Intron 4 GTACGATTCC ... TGGTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.46 | 20 | 25.2 | 39.3 |
| A2 | 51.48 | 27.8 | 28.3 | 26 |
| A3 | 70.78 | 27.2 | 72 | 46 |
| A4 | 60.28 | 24.2 | 33.5 | 33.3 |
| A5 | 72.28 | 13.7 | 31.7 | 38.7 |
| A6 | 70.24 | 52.2 | 137.7 | 98.3 |
| A7 | 69.49 | 67.5 | 157.8 | 137.5 |
| A8 | 66.55 | 47.3 | 95.2 | 82.5 |
| A9 | 77.64 | 46.5 | 179.5 | 128.7 |
| A10 | 76.12 | 52.7 | 170.3 | 142.2 |
>TRINITY_DN122383_c1_g1_i3 from sample A1 / Example spliced isoformATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAG
TAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAAAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACAC
CGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTATGGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGAT
CAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGTACATGGATAATGGTGATGAACATCAAATGTTTCTGACCATACGAGACTTTTGCTGCACAGGAGGGTCGAGGTGGACCTGGTCTGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGCAATCCC
TGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAACTAATGTTGGAGGCAATGATCCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTTATGAGT
TCCTGAATGAGATGAAGGCCCTAGCTCAACAAAATCAACAGCAGGCTCGCCACATTTTGATTTTGCATCCGCAACTGCCAAAAGCTATTTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCTAATTTCCGCTCAGATTCTGTGATACAGTCTGGTCAACAGGGTCAGATACGCATGGTGTCTCCA
CAAATGGTGCCCAATTTCCACCGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATTCGGCAGTTAATGCAACCACCTCCAGTACAGCCTTCAGCTCAGGTTATCCAACCATCTCAATCTCAAGTGCCA
CAGACAGTATTGCAGTCTCTACAATCGGTATCTCAAAGTTTGAATTTGCCAGTACAACCTCCAATGCAGTCTCCTCCACGAACTGTACAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCAGGTCTGGGGAGTCTACATCAACCACCACTACCACAACAACCAAGGCCAGTGTTGCA
GTCACTTCCACCTGCTGGTCAGGTGCAAAATCATCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCAACACAAGCACCTTTTCAGTCAGGAAACCATCCTCAGAATACCTCGGGGATTCCTTTCCAGAAACACACCCAACCTCCACTGCCCAATCTACCTCCTCCACAGCAGTCTTATCAGA
TGGGTTCTGGTAGTACAGCTGGCACAGCTCTACATGTAGGTTCTGATGCAATTCACTCAAGCTCAGGCCCAAACAACTTTCCAAGCAATGCTGGTCTCATAAATTTAGGCATTGAGGGTGCCCTCCA
>TRINITY_DN122383_c1_g1_i10 from sample A1 / Example unspliced isoform:ATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAG
TAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAAgtacgattcccctccggtgtcaataattgttgataaattcttcatcctggggataaaatcctcatgctagaatccgatgttacttaatacttacgtccatcccgtggtgaacagAGCCATAAATCAC
AGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATC
ATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTATGGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGATCAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGGTCGAGGTGGACCTGGTC
TGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGCAATCCCTGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAACTAATGTTGGAGGCAATGAT
CCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTTATGAGTTCCTGAATGAGATGAAGGCCCTAGCTCAACAAAATCAACAGCAGGCTCGCCACATTTTGATTTTGCATCCGCAACTGCCAAAAGCTATTTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCTAATTTCCGCTCAGA
TTCTGTGATACAGTCTGGTCAACAGGGTCAGATACGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATTCGGCAGTTAATGCAACCACCTCC
AGTACAGCCTTCAGCTCAGGTTATCCAACCATCTCAATCTCAAGTGCCACAGACAGTATTGCAGTCTCTACAATCGGTATCTCAAAGTTTGAATTTGCCAGTACAACCTCCAATGCAGTCTCCTCCACGAACTGTACAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCAGGTCTGG
GGAGTCTACATCAACCACCACTACCACAACAACCAAGGCCAGTGTTGCAGTCACTTCCACCTGCTGGTCAGGTGCAAAATCATCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCAACACAAGCACCTTTTCAGTCAGGAAACCATCCTCAGAATACCTCGGGGATTCCTTTCCAGAAACAC
ACCCAACCTCCACTGCCCAATCTACCTCCTCCACAGCAGTCTTATCAGATGGGTTCTGGTAGTACAGCTGGCACAGCTCTACATGTAGGTTCTGATGCAATTCACTCAAGCTCAGGCCCAAACAACTTTCCAAGCAATGCTGGTCTCATAAATTTAGGCATTGAGGGTGCCCTCCA
Intron 5 GTATTTTCAA ... ACATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.48 | 95 | 52 | 48 |
| A2 | 29.45 | 103 | 39 | 47 |
| A3 | 22.81 | 110 | 26 | 39 |
| A4 | 33.02 | 72 | 34 | 37 |
| A5 | 29.73 | 52 | 18 | 26 |
| A6 | 16.95 | 98 | 6 | 34 |
| A7 | 27.22 | 246 | 78 | 106 |
| A8 | 25.41 | 270 | 68 | 116 |
| A9 | 17.45 | 272 | 22 | 93 |
| A10 | 24.19 | 188 | 44 | 76 |
>TRINITY_DN122383_c1_g1_i19 from sample A1 / Example spliced isoformTTCTCCACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAAAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCCATATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCA
CGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGGCACAGATAATGCTTGGCATGGCGTCTCCACAAA
>TRINITY_DN122383_c1_g1_i28 from sample A1 / Example unspliced isoform:ATATCTCAAATGCATTGTTTTGTGTCTCTGAATGTTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATGGTACTTTGAATTTTCTCTTAAATTTAGTATCATTGACTATGGATTTTTTTTTCAAATGGAGTATACACTATACAGTTCATAATAGTTA
ATAAATGTTATTTATGACACATTTTTCTGAATCCCGATATCTCAAATGCATTGTTTTGTATCTCTGTATGTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGgtattttcaattttctattaaatttagtatcattgactatggaatttcattcaaatggagtatatagttcataatagttaataaatgt
tatttatgacacatttgcagGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATCATTTTTCTGAATCCCGA
TATCTCAAATGCATTGTTTTGTATCTCTGTATGTTTCAGTCTCTGAATGTTTCAGTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGGGCACAGATAATGCTTGGCATGGCGTCTCCAC
AAA
Intron 6 GTTATAAACT ... AATGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.71 | 79.5 | 16 | 39 |
| A2 | 34.55 | 54 | 32 | 25 |
| A3 | 21.88 | 75 | 15 | 27 |
| A4 | 28.38 | 53 | 26 | 16 |
| A5 | 36.51 | 20 | 15 | 8 |
| A6 | 11.4 | 136 | 15 | 20 |
| A7 | 16.65 | 270.5 | 29 | 79 |
| A8 | 18.33 | 258.5 | 38 | 78 |
| A9 | 6.15 | 244 | 16 | 16 |
| A10 | 12.59 | 187.5 | 22 | 32 |
>TRINITY_DN43610_c0_g2_i2 from sample A6 / Example spliced isoformATATCTCAAATGCATTGTTTTGTATCTCTGTATGTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAAGCAATCTCAACCCCAAAACATTCCAATGTGGCA
GTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTCGTCTCCACAAAAGGTATTTTCAATTTTCTCTTAAATTTAGTATCATTGACTATGGATTTTTTTTTCAAATGGAGTATACACTATACAGTTCATAATAGTTAATAAATGTTATTTATGACACATTTTTCTGAATCCC
GATATCTCAAATGCATTGTTTTGTATCTCTGTATGTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCCACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGG
CCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGTCATAGATAATGCCTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTGGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTG
GGAAGCAAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGT
>TRINITY_DN43610_c0_g2_i14 from sample A6 / Example unspliced isoform:GTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGCGAGAGATTGTAGTGCAGTGGTGGTTCACTGATTGAAATATCTATGTGAGTTATTGTAGTATACTATACAGATTAAGAGCCAAAGGGTATCCTTGCTTGGCTATGGATGCTTTTTGGCATTGCAAAACAAA
GTTGGCCTTGAAGAATCCATACTGTGGGGTTAGGGTCGATGCAGATTCCACAACTGTATTTTGAAAAGGTGAATGAGGCACAGATAATGCTTGCATGGTGTCTCCACAAATGGCACAGATAATGGTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGAGTCAGA
TATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGTAGCACGGTCAGACCCACTGTTATAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGGCACAGATAA
TGCTTGGCATGGCGTCTCCACAAAAGGTATTTTCAATTTTCTCTTAAATTTAGTATCATTGACTATGGATTTTTTTTTCAAATGGAGTATACACTATACAGTTCATAATAGTTAATAAATGTTATTTATGACACATTTTTCTGAATCCCGATATCTCAAATGCATTGTTTTGTATCTCTGTATGTTTCAGGCACAGATAA
TGCTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCCACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAAT
GCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGgttataaacttatacaaactgatttctaggtgtactcgatgtttcttttccatgtgtttttcatttctgagtcctgatatctcaactcaggcagataatgct
tggcatggtgtatccacaaatggtattttcagtttctcttaaatttagtattattgactatggaatttatttcaaatggagtatatagttcataatagttaataaatgttatttatgacatatttttcttctgaatgttgatatctcaaatgcattgttttgtgtctctgaatgtttcagTCATAGATAATGCCTGGCAT
GGTGTCTTCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTGGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGT
Intron 7 GTACATGGAT ... TGCACAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.31 | 14.7 | 9 | 7 |
| A2 | 47.37 | 10 | 15 | 3 |
| A3 | 34.69 | 16 | 8 | 9 |
| A4 | 56.76 | 8 | 13 | 8 |
| A5 | 36.84 | 6 | 3 | 4 |
| A6 | 36.84 | 18 | 13 | 8 |
| A7 | 32.96 | 35.7 | 20 | 15 |
| A8 | 44.19 | 12 | 10 | 9 |
| A9 | 36.02 | 19.7 | 11 | 11 |
| A10 | 27.47 | 34.3 | 16 | 10 |
>TRINITY_DN122383_c1_g1_i10 from sample A1 / Example spliced isoformATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAG
TAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAAGTACGATTCCCCTCCGGTGTCAATAATTGTTGATAAATTCTTCATCCTGGGGATAAAATCCTCATGCTAGAATCCGATGTTACTTAATACTTACGTCCATCCCGTGGTGAACAGAGCCATAAATCAC
AGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATC
ATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTATGGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGATCAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGGTCGAGGTGGACCTGGTC
TGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGCAATCCCTGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAACTAATGTTGGAGGCAATGAT
CCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTTATGAGTTCCTGAATGAGATGAAGGCCCTAGCTCAACAAAATCAACAGCAGGCTCGCCACATTTTGATTTTGCATCCGCAACTGCCAAAAGCTATTTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCTAATTTCCGCTCAGA
TTCTGTGATACAGTCTGGTCAACAGGGTCAGATACGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATTCGGCAGTTAATGCAACCACCTCC
AGTACAGCCTTCAGCTCAGGTTATCCAACCATCTCAATCTCAAGTGCCACAGACAGTATTGCAGTCTCTACAATCGGTATCTCAAAGTTTGAATTTGCCAGTACAACCTCCAATGCAGTCTCCTCCACGAACTGTACAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCAGGTCTGG
GGAGTCTACATCAACCACCACTACCACAACAACCAAGGCCAGTGTTGCAGTCACTTCCACCTGCTGGTCAGGTGCAAAATCATCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCAACACAAGCACCTTTTCAGTCAGGAAACCATCCTCAGAATACCTCGGGGATTCCTTTCCAGAAACAC
ACCCAACCTCCACTGCCCAATCTACCTCCTCCACAGCAGTCTTATCAGATGGGTTCTGGTAGTACAGCTGGCACAGCTCTACATGTAGGTTCTGATGCAATTCACTCAAGCTCAGGCCCAAACAACTTTCCAAGCAATGCTGGTCTCATAAATTTAGGCATTGAGGGTGCCCTCCA
>TRINITY_DN122383_c1_g1_i3 from sample A1 / Example unspliced isoform:ATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAG
TAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAAAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGCTCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACAC
CGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTATGGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGAT
CAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGgtacatggataatggtgatgaacatcaaatgtttctgaccatacgagacttttgctgcacaggagGGTCGAGGTGGACCTGGTCTGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGCAATCCC
TGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAACTAATGTTGGAGGCAATGATCCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTTATGAGT
TCCTGAATGAGATGAAGGCCCTAGCTCAACAAAATCAACAGCAGGCTCGCCACATTTTGATTTTGCATCCGCAACTGCCAAAAGCTATTTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCTAATTTCCGCTCAGATTCTGTGATACAGTCTGGTCAACAGGGTCAGATACGCATGGTGTCTCCA
CAAATGGTGCCCAATTTCCACCGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATTCGGCAGTTAATGCAACCACCTCCAGTACAGCCTTCAGCTCAGGTTATCCAACCATCTCAATCTCAAGTGCCA
CAGACAGTATTGCAGTCTCTACAATCGGTATCTCAAAGTTTGAATTTGCCAGTACAACCTCCAATGCAGTCTCCTCCACGAACTGTACAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCAGGTCTGGGGAGTCTACATCAACCACCACTACCACAACAACCAAGGCCAGTGTTGCA
GTCACTTCCACCTGCTGGTCAGGTGCAAAATCATCCAACTCAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCAACACAAGCACCTTTTCAGTCAGGAAACCATCCTCAGAATACCTCGGGGATTCCTTTCCAGAAACACACCCAACCTCCACTGCCCAATCTACCTCCTCCACAGCAGTCTTATCAGA
TGGGTTCTGGTAGTACAGCTGGCACAGCTCTACATGTAGGTTCTGATGCAATTCACTCAAGCTCAGGCCCAAACAACTTTCCAAGCAATGCTGGTCTCATAAATTTAGGCATTGAGGGTGCCCTCCA
Intron 8 GTATTTTCAA ... ACATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.86 | 101 | 40 | 38 |
| A2 | 33.08 | 88 | 35 | 52 |
| A3 | 23.27 | 122 | 36 | 38 |
| A4 | 27.62 | 76 | 22 | 36 |
| A5 | 30.91 | 38 | 16 | 18 |
| A6 | 14.4 | 220 | 52 | 22 |
| A7 | 20.16 | 408 | 134 | 72 |
| A8 | 16.9 | 450 | 116 | 67 |
| A9 | 15.62 | 405 | 128 | 22 |
| A10 | 21.03 | 291 | 96 | 59 |
>TRINITY_DN123215_c3_g1_i16 from sample A2 / Example spliced isoformCTAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGTCATAGATAA
TGCCTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGAGTCTACATGAATGGCCACTACCACAACAACCAAGTAGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTT
GGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACATCAGAGGCACCTTTTCAGGAAACAGAGTATCAGGTTTAGTCTTAACCAGCCACCTAATTTGAGAAAATACAAATTCCTTTCCTTTATTGTAAGCAACGTAATTGTCTGTGA
ACACAAAATTCCTTAGTGAAAGGCCACAGAATAACTCACATACGATTGACGAGGAAGCTGTCGTATGATTCAACAAGAGGAGGATGTTATCGTTTGCGTCATAACAAGTGGAAGAGTAGCATATCTTGACTTATGGAAGCATCGTAACATTTAAGGAACACACGATTCCTTTTTGTTTTGTGTTATTTGAGGCATGTAAG
TCTTCAAGATGCCACATTAAGTCGTTCATGTGGCAAGTCAAAATATTTATAATTTATTTAGAATAAAATAAAGATTTTTTAATATAATAAAAGTATACCATAAAATTTTATGTCACCAAAGATACCTGAGAGGGGTTAGTATTAATCAAGGAAGTCCAAATTACAAATAGAAGTTATTGAAGTACATAATGGAATGTTTT
TATTTGTTTGTTCACTTGTAATAAAGAATTTACATATAGTTATTTAACCATGTAACTATAATGGAGAATTTTTTTCCTACTAAATTGTAATCAAGAGTTGTATATATAAATCAATGAAGTAATAAAAAAATATTATAATCAAGAATGCCATCATAAATTACGATAGGAAAATGAAGATCTCAATAAGAAATTTGAAGAAA
ATAGAAAG
>TRINITY_DN123215_c3_g1_i11 from sample A2 / Example unspliced isoform:CTAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGTCATAGATAA
TGCCTGGCATGGTGTCTTCACAAATGgtattttcaattttctcttaaacttagtatcattgactatggaatttctttcaaatggagtatatagttaattaatgttatttatgacacatttgcagGTGCCCAATTTCCACCCAGATTCTCTGAGATAGTCTGGTTGGCCTCAACAACCTTCCATCCAACTAAATCCGGGGA
GTCTACATGAATGGCCACTACCACAACAACCAAGTAGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAACCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACATCAGAGGCACCTT
TTCAGGAAACAGAGTATCAGGTTTAGTCTTAACCAGCCACCTAATTTGAGAAAATACAAATTCCTTTCCTTTATTGTAAGCAACGTAATTGTCTGTGAACACAAAATTCCTTAGTGAAAGGCCACAGAATAACTCACATACGATTGACGAGGAAGCTGTCGTATGATTCAACAAGAGGAGGATGTTATCGTTTGCGTCAT
AACAAGTGGAAGAGTAGCATATCTTGACTTATGGAAGCATCGTAACATTTAAGGAACACACGATTCCTTTTTGTTTTGTGTTATTTGAGGCATGTAAGTCTTCAAGATGCCACATTAAGTCGTTCATGTGGCAAGTCAAAATATTTATAATTTATTTAGAATAAAATAAAGATTTTTTAATATAATAAAAGTATACCATA
AAATTTTATGTCACCAAAGATACCTGAGAGGGGTTAGTATTAATCAAGGAAGTCCAAATTACAAATAGAAGTTATTGAAGTACATAATGGAATGTTTTTATTTGTTTGTTCACTTGTAATAAAGAATTTACATATAGTTATTTAACCATGTAACTATAATGGAGAATTTTTTTCCTACTAAATTGTAATCAAGAGTTGTA
TATATAAATCAATGAAGTAATAAAAAAATATTATAATCAAGAATGCCATCATAAATTACGATAGGAAAATGAAGATCTCAATAAGAAATTTGAAGAAAATAGAAAG
Intron 9 GCTCTGATGC ... TGAAGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.04 | 39.1 | 45.7 | 46 |
| A2 | 46.41 | 22.8 | 15.3 | 24 |
| A3 | 70.78 | 18.9 | 45.4 | 46 |
| A4 | 41.22 | 20.3 | 11.4 | 17 |
| A5 | 47.12 | 16.2 | 12 | 16.6 |
| A6 | 52.09 | 14.3 | 15 | 16 |
| A7 | 63.62 | 25.2 | 43.9 | 44 |
| A8 | 54.34 | 51.2 | 55.3 | 66.4 |
| A9 | 56.9 | 26 | 31.8 | 36 |
| A10 | 65.31 | 22.9 | 45.4 | 39 |
>TRINITY_DN122383_c1_g1_i12 from sample A1 / Example spliced isoformTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAGTAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTC
CACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGGTGGACAGGGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTC
CAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTGCAATCTCAACCCCAAAACATTCCAATTCGTGTTATCTGAACCATCTCAATCTCAAGTGCCACAGATATTATTGCAGTCTCTACAATAGGCATCTCAAAGTTTGAGTTTGACAGTACAAACTCCAATGTAGTCTCCACACACTGCGCAGCCTCAAGT
TCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATGTGTCACACCAGCTGTCATCAGAGGCACCTT
TTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGGTTGGGCAGCATGGTAAGGCCCAACTGTTACAGCAATTTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACCGCCTCCAGTGCAGCCTTCATTTCAGGTTATCCAGCCGTCTCAATCTCAAATGCCACAGAGT
ATTGCAGTCTCTGCAATAGGTATCTCAAAGTTTGAATTTGCCAGTACGACTCCAATGCAGTCTCCACACATTGTACATACTACAGCATCAAGTTTTTCCTATTCTTTCACGTAGCCTCAACCTTCCAACCAACCAAGTCCGAGAAGTCTACATCAACTGTCACTACCACAACAACCGAGGCCATTGTTGCAATCTCTTCC
ACCGGCAGGTCGAGGTCAAACCATCAAGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGTGTGCCACACCAACTGTCAGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATCCTGGGCAACTTTTCAGGAAACCATCCTCAGAACACATTGGGGGATTCCTTTC
CACTTTCCAGTAACACACCCAACCTCCACTGCCGAATCTACCACGGCAGTCTTATCAGGACCAAGCAACTTTCCAAGCAATGCTGGCCTCATAAACTTAGGCATTGAGGGTGCCCTCCAAGTGGGTAGAGGATCTAATAATTTGTCCCAGGGATTGAGTGGCATTTCTAATGTATCCTGGTCTCAGGTCCCACACAATCT
ACCATGGCAGTCTTATCAGATGAGATTTTTAGTACAGCTGGCATTGCTCTACATGCAGGCTGTGATGCAATTCGCTGAAGCACAGGCCCATGCAAAATGGCCTCATAAATTTAGGCACTGAGGGTGCCCTCCAAGTGGGAAGAGGATCTAATAATTTGGTCCAAGGATTGGGTGGCAGTCCTGATGCATCATGGTCCTAG
GTCCCACATTCAGCTAGTGGTGTATGTGGGGACCTAACAACTAATTTGGTCCAAGGATTGGGTGGCATTCCCGATATATCCTGGTCTAAGGTCCCACAATCAGCTGGTGGTGAATGTGGGGACTTGGCAACTAATTTGGTCCAAGAATTGGGTGGCATTCCCGATGTATCCTGGTCTCAAGTCCCACAATCAGCTGGTGC
TGTATGTGGGGACTTGGCTACAGTTGCATCTACTTCTACAGGGACACCTAATATATATGATGGAAGCAAGCAGCCTATACAACTGTGGGGATGGAAATGGTGGAATGGCTTCTGGGTCTTCAGACATTTGAGTAGGAGCTAGCCCTGGTCATTCTCAACGGCCCAGCCAAATGCCAATTGAAGAGACATCACAACCACGA
TAGCCTGCATCATGGGGTGCATCATGGAGTATTCTTTACATGTGAATTCCCTTTGGTACAAATCCTTTTTGTTGCAGCTCACTCCAGAACTAGAATCTGCATTGCTGCAACAAGTGATGAGTCTTAGTCCAGAACAAAGAAATTCTTTGCCACCTGAGCAACCAGT
>TRINITY_DN122383_c1_g1_i21 from sample A1 / Example unspliced isoform:TGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAGTAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTC
CACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGGTGGACAGGGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTC
CAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTGCAATCTCAACCCCAAAACATTCCAATTCGTGTTATCTGAACCATCTCAATCTCAAGTGCCACAGATATTATTGCAGTCTCTACAATAGGCATCTCAAAGTTTGAGTTTGACAGTACAAACTCCAATGTAGTCTCCACACACTGCGCAGCCTCAAGT
TCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATGTGTCACACCAGCTGTCATCAGAGGCACCTT
TTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGGTTGGGCAGCATGGTAAGGCCCAACTGTTACAGCAATTTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACCGCCTCCAGTGCAGCCTTCATTTCAGGTTATCCAGCCGTCTCAATCTCAAATGCCACAGAGT
ATTGCAGTCTCTGCAATAGGTATCTCAAAGTTTGAATTTGCCAGTACGACTCCAATGCAGTCTCCACACATTGTACATACTACAGCATCAAGTTTTTCCTATTCTTTCACGTAGCCTCAACCTTCCAACCAACCAAGTCCGAGAAGTCTACATCAACTGTCACTACCACAACAACCGAGGCCATTGTTGCAATCTCTTCC
ACCGGCAGGTCGAGGTCAAACCATCAAGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGTGTGCCACACCAACTGTCAGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATCCTGGGCAACTTTTCAGGAAACCATCCTCAGAACACATTGGGGGATTCCTTTC
CACTTTCCAGTAACACACCCAACCTCCACTGCCGAATCTACCACGGCAGTCTTATCAGgctctgatgcaattcgctgaagcacagGACCAAGCAACTTTCCAAGCAATGCTGGCCTCATAAACTTAGGCATTGAGGGTGCCCTCCAAGTGGGTAGAGGATCTAATAATTTGTCCCAGGGATTGAGTGGCATTTCTAATGT
ATCCTGGTCTCAGGTCCCACACAATCTACCATGGCAGTCTTATCAGATGAGATTTTTAGTACAGCTGGCATAGCTCTACATGCAGGCTGTGATGCAATTCGCTGAAGCACAGGCCCATGCAAAATGGCCTCATAAATTTAGGCACTGAGGGTGCCCTCCAAGTGGGAAGAGGATCTAATAATTTGGTCCAAGGATTGGGT
GGCAGTCCTGATGCATCATGGTCCTAGGTCCCACATTCAGCTAGTGGTGTATGTGGGGACCTAACAACTAATTTGGTCCAAGGATTGGGTGGCATTCCCGATATATCCTGGTCTAAGGTCCCACAATCAGCTGGTGGTGAATGTGGGGACTTGGCAACTAATTTGGTCCAAGAATTGGGTGGCATTCCCGATGTATCCTG
GTCTCAAGTCCCACAATCAGCTGGTGCTGTATGTGGGGACTTGGCTACAGTTGCATCTACTTCTACAGGGACACCTAATATATATGATGGAAGCAAGCAGCCTATACAACTGTGGGGATGGAAATGGTGGAATGGCTTCTGGGTCTTCAGACATTTGAGTAGGAGCTAGCCCTGGTCATTCTCAACGGCCCAGCCAAATG
CCAATTGAAGAGACATCACAACCACGATAGCCTGCATCATGGGGTGCATCATGGAGTATTCTTTACATGTGAATTCCCTTTGGTACAAATCCTTTTTGTTGCAGCTCACTCCAGAACTAGAATCTGCATTGCTGCAACAAGTGATGAGTCTTAGTCCAGAACAAAGAAATTCTTTGCCACCTGAGCAACCAGT
Intron 10 GTGCAATCTC ... ATTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.04 | 48.5 | 38 | 63 |
| A2 | 49.57 | 27.5 | 17 | 37 |
| A3 | 57.48 | 20 | 13 | 41 |
| A4 | 61.24 | 15.5 | 19 | 29 |
| A5 | 51.43 | 27.5 | 4 | 54 |
| A6 | 68.24 | 11.5 | 17 | 27 |
| A7 | 57.77 | 53.5 | 39 | 105 |
| A8 | 54.29 | 50.5 | 46 | 72 |
| A9 | 53.56 | 47.5 | 47 | 59 |
| A10 | 58.62 | 26 | 25 | 47 |
>TRINITY_DN122383_c1_g1_i33 from sample A1 / Example spliced isoformCCAGTGCAGCCTTCAGTTCAGGTCAGCCTCAATAACTTTCCAACTAGCCAAGTCTGGGGAGTCTACATCAACCGTCACTACCACAGCACCCAAGGCCATTGTTGCACTCTCTTCCACCTGCAGGTCAGGTGCAAAATCAGCCAACTCAGAAATTAGAATATGGGGTTCAAACCATCAAGTGTGCCACACCAACTGTCATC
AGAGGCACCTTTTCAGGGTCAGATATGTTTAGCACAAAATCAGATTCAAATGGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTCCAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTCAGCCTCAACAACCTTCCAACCAGCCGAGT
CTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAACAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGGTTGGGCAGCATGGTAAGGCCC
AACTGTTACAGCAATTTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGTGTGCCACACCAACTGTCATCCTGGGCAACTTTTCAGG
>TRINITY_DN122383_c1_g1_i18 from sample A1 / Example unspliced isoform:TGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAGTAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTC
CACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGGTGGACAGGGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTC
CAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAgtgcaatctcaaccccaaaacattccaattcgtgttatctgaaccatctcaatctcaagtgccacagatattattgcagtctctacaataggcatctcaaagtttgagtttgacagtacaaactccaatgtagtctccacacactgcgcagcctcaagt
tcctcctattctttcagGTCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATGTGTCACACCAGCTGTCATCAGAGGCACCTT
TTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGGTTGGGCAGCATGGTAAGGCCCAACTGTTACAGCAATTTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACCGCCTCCAGTGCAGCCTTCATTTCAGGTTATCCAGCCGTCTCAATCTCAAATGCCACAGAGT
ATTGCAGTCTCTGCAATAGGTATCTCAAAGTTTGAATTTGCCAGTACGACTCCAATGCAGTCTCCACACATTGTACATACTACAGCATCAAGTTTTTCCTATTCTTTCACGTAGCCTCAACCTTCCAACCAACCAAGTCCGAGAAGTCTACATCAACTGTCACTACCACAACAACCGAGGCCATTGTTGCAATCTCTTCC
ACCGGCAGGTCGAGGTCAAACCATCAAGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGTGTGCCACACCAACTGTCAGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATCCTGGGCAACTTTTCAGGAAACCATCCTCAGAACACATTGGGGGATTCCTTTC
CACTTTCCAGTAACACACCCAACCTCCACTGCCGAATCTACCACGGCAGTCTTATCAGGCTCTGATGCAATTCGCTGAAGCACAGGACCAAGCAACTTTCCAAGCAATGCTGGCCTCATAAACTTAGGCATTGAGGGTGCCCTCCAAGTGGGTAGAGGATCTAATAATTTGTCCCAGGGATTGAGTGGCATTTCTAATGT
ATCCTGGTCTCAGGTCCCACACAATCTACCATGGCAGTCTTATCAGATGAGATTTTTAGTACAGCTGGCATAGCTCTACATGCAGGCTGTGATGCAATTCGCTGAAGCACAGGCCCATGCAAAATGGCCTCATAAATTTAGGCACTGAGGGTGCCCTCCAAGTGGGAAGAGGATCTAATAATTTGGTCCAAGGATTGGGT
GGCAGTCCTGATGCATCATGGTCCTAGGTCCCACATTCAGCTAGTGGTGTATGTGGGGACCTAACAACTAATTTGGTCCAAGGATTGGGTGGCATTCCCGATATATCCTGGTCTAAGGTCCCACAATCAGCTGGTGGTGAATGTGGGGACTTGGCAACTAATTTGGTCCAAGAATTGGGTGGCATTCCCGATGTATCCTG
GTCTCAAGTCCCACAATCAGCTGGTGCTGTATGTGGGGACTTGGCTACAGTTGCATCTACTTCTACAGGGACACCTAATATATATGATGGAAGCAAGCAGCCTATACAACTGTGGGGATGGAAATGGTGGAATGGCTTCTGGGTCTTCAGACATTTGAGTAGGAGCTAGCCCTGGTCATTCTCAACGGCCCAGCCAAATG
CCAATTGAAGAGACATCACAACCACGATAGCCTGCATCATGGGGTGCATCATGGAGTATTCTTTACATGTGAATTCCCTTTGTTGCAGCTCACTCCAGAACTAGAATCTGCATTGCTGCAACAAGTGATGAGTCTTAGTCCAGAACAAAGAAATTCTTTGCCACCTGAGCAACCAGT
Intron 11 GTCTCTGAAT ... ATCCGGGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.81 | 63 | 23 | 28 |
| A2 | 34.55 | 36 | 7 | 31 |
| A3 | 21.15 | 41 | 6 | 16 |
| A4 | 26.47 | 25 | 7 | 11 |
| A5 | 17.91 | 55 | 5 | 19 |
| A6 | 49.06 | 27 | 11 | 41 |
| A7 | 35.58 | 105 | 23 | 93 |
| A8 | 41.56 | 71 | 34 | 67 |
| A9 | 39.18 | 59 | 14 | 62 |
| A10 | 40.13 | 47 | 11 | 52 |
>TRINITY_DN122383_c1_g1_i18 from sample A1 / Example spliced isoformTGTCATCAGAGGCACCTTTTCGGGGTCAGATACGTTAGCACAAAATCAAATTCAAACCGGGAAGTAAGCCCAGATGCAAGGTCAGGCCCAGCTTTTACAGCAATCTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTC
CACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGGTGGACAGGGTCAGATATGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTC
CAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTGCAATCTCAACCCCAAAACATTCCAATTCGTGTTATCTGAACCATCTCAATCTCAAGTGCCACAGATATTATTGCAGTCTCTACAATAGGCATCTCAAAGTTTGAGTTTGACAGTACAAACTCCAATGTAGTCTCCACACACTGCGCAGCCTCAAGT
TCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATGTGTCACACCAGCTGTCATCAGAGGCACCTT
TTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGGTTGGGCAGCATGGTAAGGCCCAACTGTTACAGCAATTTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACCGCCTCCAGTGCAGCCTTCATTTCAGGTTATCCAGCCGTCTCAATCTCAAATGCCACAGAGT
ATTGCAGTCTCTGCAATAGGTATCTCAAAGTTTGAATTTGCCAGTACGACTCCAATGCAGTCTCCACACATTGTACATACTACAGCATCAAGTTTTTCCTATTCTTTCACGTAGCCTCAACCTTCCAACCAACCAAGTCCGAGAAGTCTACATCAACTGTCACTACCACAACAACCGAGGCCATTGTTGCAATCTCTTCC
ACCGGCAGGTCGAGGTCAAACCATCAAGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGTGTGCCACACCAACTGTCAGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATCCTGGGCAACTTTTCAGGAAACCATCCTCAGAACACATTGGGGGATTCCTTTC
CACTTTCCAGTAACACACCCAACCTCCACTGCCGAATCTACCACGGCAGTCTTATCAGGCTCTGATGCAATTCGCTGAAGCACAGGACCAAGCAACTTTCCAAGCAATGCTGGCCTCATAAACTTAGGCATTGAGGGTGCCCTCCAAGTGGGTAGAGGATCTAATAATTTGTCCCAGGGATTGAGTGGCATTTCTAATGT
ATCCTGGTCTCAGGTCCCACACAATCTACCATGGCAGTCTTATCAGATGAGATTTTTAGTACAGCTGGCATAGCTCTACATGCAGGCTGTGATGCAATTCGCTGAAGCACAGGCCCATGCAAAATGGCCTCATAAATTTAGGCACTGAGGGTGCCCTCCAAGTGGGAAGAGGATCTAATAATTTGGTCCAAGGATTGGGT
GGCAGTCCTGATGCATCATGGTCCTAGGTCCCACATTCAGCTAGTGGTGTATGTGGGGACCTAACAACTAATTTGGTCCAAGGATTGGGTGGCATTCCCGATATATCCTGGTCTAAGGTCCCACAATCAGCTGGTGGTGAATGTGGGGACTTGGCAACTAATTTGGTCCAAGAATTGGGTGGCATTCCCGATGTATCCTG
GTCTCAAGTCCCACAATCAGCTGGTGCTGTATGTGGGGACTTGGCTACAGTTGCATCTACTTCTACAGGGACACCTAATATATATGATGGAAGCAAGCAGCCTATACAACTGTGGGGATGGAAATGGTGGAATGGCTTCTGGGTCTTCAGACATTTGAGTAGGAGCTAGCCCTGGTCATTCTCAACGGCCCAGCCAAATG
CCAATTGAAGAGACATCACAACCACGATAGCCTGCATCATGGGGTGCATCATGGAGTATTCTTTACATGTGAATTCCCTTTGTTGCAGCTCACTCCAGAACTAGAATCTGCATTGCTGCAACAAGTGATGAGTCTTAGTCCAGAACAAAGAAATTCTTTGCCACCTGAGCAACCAGT
>TRINITY_DN122383_c1_g1_i6 from sample A1 / Example unspliced isoform:ATATCTCAAATGCATTGTTTTGTGTCTCTGAATGTTGCAACGGTTACCTCCACTGCAGCCTTAAGTTCAGGCACATATAATGCTTGGCATGGTTTCTCCACAATTGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATGTTTCCCAATTTCCACCCAGATTTTGTGAGATAGTTTGGTGGACAGGGTCAGATATGTT
TAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTCCAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTTCGTGTTATCTAACCATCTCAATCTCAAGTGCCACAGATATTATTGCAGTCTCTACAAT
AGGCATCTCAAAGTTTGAGTTTGACAGTACAAACTCCAATGTAGTCTCCACACACTGCGCAGCCTCAAGTTCCTCCTATTCTTTCAGGTgtctctgaatgtttcagtcatagataatgcctggcatggtgtcttcacaaatggtgcccaatttccacccagattctctgagatagtctggttggcctcaacaaccttcca
tccaactaaatccggggagCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATGTGTCACACCAGCTGTCATCAGAGGCACCTT
TTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGGTTGGGCAGCATGGTAAGGCCCAACTGTTACAGCAATTTCAACCCCAAAACATTCCAATGTGGCAGTTAATGCAACCGCCTCCAGTGCAGCCTTCATTTCAGGTTATCCAGCCGTCTCAATCTCAAATGCCACAGAGT
ATTGCAGTCTCTGCAATAGGTATCTCAAAGTTTGAATTTGCCAGTACGACTCCAATGCAGTCTCCACACATTGTACATACTACAGCATCAAGTTTTTCCTATTCTTTCACGTAGCCTCAACCTTCCAACCAACCAAGTCCGAGAAGTCTACATCAACTGTCACTACCACAACAACCGAGGCCATTGTTGCAATCTCTTCC
ACCGGCAGGTCGAGGTCAAACCATCAAGTGTGCCACACCAACTGTCAGGCACAGATAATGCTTGGCATGGCGTCTCCACAAATCCTGGGCAACTTTTCAGGAAACCATCCTCAGAACACATTGGGGGATTCCTTTCCACTTTCCAGTAACACACCCAACCTCCACTGCCGAATCTACCACGGCAGTCTTATCAGGCTCTG
ATGCAATTCGCTGAAGCACAGGACCAAGCAACTTTCCAAGCAATGCTGGCCTCATAAACTTAGGCATTGAGGGTGCCCTCCAAGTGGGTAGAGGATCTAATAATTTGTCCCAGGGATTGAGTGGCATTTCTAATGTATCCTGGTCTCAGGTCCCACACAATCTACCATGGCAGTCTTATCAGATGAGATTTTTAGTACAG
CTGGCATAGCTCTACATGCAGGCTGTGATGCAATTCGCTGAAGCACAGGCCCATGCAAAATGGCCTCATAAATTTAGGCACTGAGGGTGCCCTCCAAGTGGGAAGAGGATCTAATAATTTGGTCCAAGGATTGGGTGGCAGTCCTGATGCATCATGGTCCTAGGTCCCACATTCAGCTAGTGGTGTATGTGGGGACCTAA
CAACTAATTTGGTCCAAGGATTGGGTGGCATTCCCGATATATCCTGGTCTAAGGTCCCACAATCAGCTGGTGGTGAATGTGGGGACTTGGCAACTAATTTGGTCCAAGAATTGGGTGGCATTCCCGATGTATCCTGGTCTCAAGTCCCACAATCAGCTGGTGCTGTATGTGGGGACTTGGCTACAGTTGCATCTACTTCT
ACAGGGACACCTAATATATATGATGGAAGCAAGCAGCCTATACAACTGTGGGGATGGAAATGGTGGAATGGCTTCTGGGTCTTCAGACATTTGAGTAGGAGCTAGCCCTGGTCATTCTCAACGGCCCAGCCAAATGCCAATTGAAGAGACATCACAACCACGATAGCCTGCATCATGGGGTGCATCATGGAGTATTCTTT
ACATGTGAATTCCCTTTGGTACAAATCCTTTTTGTTGCAGCTCACTCCAGAACTAGAATCTGCATTGCTGCAACAAGTGATGAGTCTTAGTCCAGAACAAAGAAATTCTTTGCCACCTGAGCAACCAGT
Intron 12 GTTCTCCATC ... ATTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.55 | 28 | 88 | 60 |
| A2 | 65.77 | 19 | 39 | 34 |
| A3 | 68.66 | 21 | 50 | 42 |
| A4 | 57.98 | 25 | 40 | 29 |
| A5 | 60.71 | 22 | 26 | 42 |
| A6 | 50.48 | 26 | 29 | 24 |
| A7 | 61.47 | 63 | 113 | 88 |
| A8 | 59.25 | 65 | 119 | 70 |
| A9 | 59.66 | 48 | 90 | 52 |
| A10 | 65.28 | 25 | 56 | 38 |
>TRINITY_DN46503_c1_g2_i5 from sample A8 / Example spliced isoformCATGCCTTGGAGATAGCTGGTGTTCTGAGCTCTGATGGCCACGATTACTGGACAGGTGGAACGACGGCACATATAATGCTTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACTTGGGAAGCAAGCCCACAT
GCAGGTTGGGCAGCATGGTCATGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGCAACCACCTCCAGTGCATCCTTCAGTTCAGGTCAGCCTCAACAACCTTCCAAACAGCCAAGTCTGGGGAGTCTACTTCAACCGCCACTACCACAACAACCAAGGCCATTGTTGCAATCTCTTCCA
CCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATGTGCCACACCAGCTGTCATCAGAGGCACCTTTTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGG
>TRINITY_DN46503_c1_g2_i3 from sample A8 / Example unspliced isoform:CATGCCTTGGAGATAGCTGGTGTTCTGAGCTCTGATGGCCACGATTACTGGACAGGTGGAACGACGGCACATATAATGCTTGGCATGGTGTCTTCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGAGTCAGATATGTTTAGCACAAAATCAGATTCAACTTGGGAAGCAAGCCCACAT
GCAGGTTGGGCAGCATGGTCATGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGCAACCACCTCCAGTGCATCCTTCAGTTCAGgttctccatccatctcaatctcaagtgccacagatagtattgcagtctctacaataggcatctcaaagtttgagtttgatagtacaaactccaat
gcagtctccacacactgcacagcctcaagtttctcctattatttcagGTCAGCCTCAACAACCTTCCAAACAGCCAAGTCTGGGGAGTCTACTTCAACCGCCACTACCACAACAACCAAGGCCATTGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATG
TGCCACACCAGCTGTCATCAGAGGCACCTTTTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCGGATGCAGG
Intron 13 GTAATGTATT ... CTGAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.49 | 10.5 | 1 | 4 |
| A2 | 32.97 | 3.5 | 0 | 3 |
| A3 | 30.3 | 7 | 4 | 2 |
| A4 | 38.09 | 10 | 3 | 9 |
| A5 | 38.78 | 9.5 | 4 | 7 |
| A6 | 16.68 | 12.5 | 4 | 1 |
| A7 | 18.75 | 22 | 2 | 8 |
| A8 | 20.63 | 19.5 | 4 | 6 |
| A9 | 14.59 | 20.5 | 2 | 5 |
| A10 | 12.97 | 23.5 | 2 | 5 |
>TRINITY_DN111226_c0_g3_i11 from sample A4 / Example spliced isoformTATAGATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGC
TCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTAT
GGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGATCAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGTACATGGATAATGGTGATGAACATCAAATGTTTCTGACCATACGAGACTTTTGCTGCACAGGAG
GGTCGAGGTGGACCTGGTCTGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGCAATCCCTGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAAC
TAATGTTGGAGGCAATGATCCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTTATGAGTTCCTGAATGAGATGAAGGCCCTAGCTCAACAAAATCAACAGCAGGCTCGCCACATTTTGATTTTGCATCCGCAACTGCCAAAAGCTATTTTTCAGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGT
TATGGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGATCAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGGTCGAGGTGGACCTGGTCTGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGC
AATCCCTGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAACTAATGTTGGAGGCAATGATCCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTT
ATGAGTTCCTGAATGAGATGAAGG
>TRINITY_DN111226_c0_g3_i8 from sample A4 / Example unspliced isoform:TATAGATTCGAGGGAGCGTTTGATTTTTGGCACGGCATTCATCGAATCATTTGGATGCCGGCATGGCGGAACGGAGAGAGTGACAGTTATGAAATTCTGCAGCAGTTGTAAGACAAACCTGTAAGGCGGCGGTTGGCCCGGAGCCATAAATCACAGCCAGTTTTAGATGCTGAAGCACCCGTAGCAGCCTCCGCAGTTGC
TCGTGAACCAGTTGATTCATCAGTTGCAGTTCGAAGAGAAGCTGTTAATCATGGCCACCCCACAACACCGCTGTGTCTTCGTGGGAAATATACCATACGATGCGACAGAAGAACAACTGGTACAGATATGTGAAGAAGTAGGACCCGTTGTATCATTTCGTTTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTAT
GGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAGATCAATGGTCGGCAGCTACGTGTTGACTATGCTGAAAATGACAAAAGTGTGGACAGAAATAGGGAGCAGGTACATGGATAATGGTGATGAACATCAAATGTTTCTGACCATACGAGACTTTTGCTGCACAGGAG
GGTCGAGGTGGACCTGGTCTGGCCTCAAATTTTGATAGTCAGAAGTCATCTGTTGGCCCTGCAATCCCTGTAGATCCATCATTTAATCAGCCTATAGGCCTTGCAGTTGCAGCAGCTGCAGCATCTGTCATGGCAGGAGCTCTTGGAGAGCCACAGACATCTGCAATGGATCAAAATCAGAGTTCCATCCAAGGTCAAAC
TAATGTTGGAGGCAATGATCCTCTTACTCTTCATTTAGCTAGCATGTCCAGGAACCAGCTTTATGAGTTCCTGAATGAGATGAAGgtaatgtattatttattggaggttagttcagggctttccttctatgcatctagtgaaagtatttattaccatttttgacgtcaaacattctgagtgcagGCCCTAGCTCAACAAA
ATCAACAGCAGGCTCGCCACATTTTGATTTTGCATCCGCAACTGCCAAAAGCTATTTTTCAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCTAATTTCCGCTCAGATTCTGTGATACAGTCTGGTCAACAGGGTCAGATACGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAGCCCAGATGCAG
GTTGGGAAGCACGGTCAGGCCCACTGTTACAACAATCTCGACCCCAAAACATTCCAATGCAGCAGTTAGTGCAACCACATCCAGTACAGCCTTCAGTTCGTGTTATCTAACCATCTCAATCTCAAGTGCCACAGATATTATTGCAGTCTCTACAATAGGCATCTCAAAGTTTGAGTTTGACAGTACAAACTCCAATGTAG
TCTCCACACACTGCGCAGCCTCAAGTTCCTCCTATTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCGAGTCTGGGGAGTCTACATCAACTGCCACTACCACAACAACCGAGTCCATCGTTGCAATCTCTTCCACCTGCAGGTCAGGTGCATAATCAGCCAACTCAGAATATGGGGTTCAAACCATCAAATGTGTC
ACACCAGCTGTCATCAGAGGCACCTTTTCAGGGTCAGATACGATTAGCACAAAATCAGATTCCAACCGGGAAGCAAGGCCG
Intron 14 GTATTTTCAA ... TATGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.02 | 48.8 | 58 | 48 |
| A2 | 43.64 | 51.6 | 35 | 39 |
| A3 | 36.98 | 68.8 | 28 | 46 |
| A4 | 47.78 | 38.2 | 37 | 28 |
| A5 | 43.73 | 27 | 12 | 25 |
| A6 | 33.98 | 52.4 | 14 | 38 |
| A7 | 43.95 | 124.8 | 77 | 104 |
| A8 | 40.71 | 134.4 | 84 | 91 |
| A9 | 27.98 | 156.4 | 27 | 87 |
| A10 | 33.6 | 117 | 38 | 75 |
>TRINITY_DN123215_c3_g1_i22 from sample A2 / Example spliced isoformTGTGGACTAAAGAGGCACAGATAATGCTTGGCATGGCGTCTCCACAAAAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGC
ACGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGGTTATAAACTTATACAAACTGATTTCTAGGTGTACTCGATGTTTCTTTTCCATGTGTTTTTCATTTCTGAGTCCTGATATCTCAACTCAGGCAGATAATGCTTGGCATG
GTGTATCCACAAATGGTATTTTCAGTTTCTCTTAAATTTAGTATTATTGACTATGGAATTTATTTCAAATGGAGTATATAGTTCATAATAGTTAATAAATGTTATTTATGACATATTTTTCTTCTGAATGTTGATATCTCAAATGCATTGTTTTGTGTCTCTGAATGTTTCAGGCACAGATAATGCTTGGCATGGCGTCT
CCACAAAAGGTATTTTCAATTTTCTCTTAAATTTAGTATCATTGACTATGGATTTTTTTTTCAAATGGAGTATACACTATACAGTTCATAATAGTTAATAAATGTTATTTATGACACATTTTTCTGAATCCCGATATCTCAAATGCATTGTTTTGTATCTCTGTATGTTTCAGGCACAGATAATGCTTGGCATGGTGTCT
CCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAAC
>TRINITY_DN123215_c3_g1_i22 from sample A2 / Example unspliced isoform:TGTGGACTAAAGAGGCACAGATAATGCTTGGCATGGCGTCTCCACAAAAGGCACAGATAATGCTTGGCATGGTGTCTCCACAAATGGTGCCCAATTTCCACCTAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGC
ACGGTCAGGCCCACTGTTACAGCAATCTCAACCCCAAAACATTCCAATGCGGCAGTTAATGGAACCACCTCCAGTGCAGCCTTCAGTTCAGGTTATAAACTTATACAAACTGATTTCTAGGTGTACTCGATGTTTCTTTTCCATGTGTTTTTCATTTCTGAGTCCTGATATCTCAACTCAGGCAGATAATGCTTGGCATG
GTGTATCCACAAATGGTATTTTCAGTTTCTCTTAAATTTAGTATTATTGACTATGGAATTTATTTCAAATGGAGTATATAGTTCATAATAGTTAATAAATGTTATTTATGACATATTTTTCTTCTGAATGTTGATATCTCAAATGCATTGTTTTGTGTCTCTGAATGTTTCAGGCACAGATAATGCTTGGCATGGCGTCT
CCACAAAAGgtattttcaattttctcttaaatttagtatcattgactatggatttttttttcaaatggagtatacactatacagttcataatagttaataaatgttatttatgacacatttttctgaatcccgatatctcaaatgcattgttttgtatctctgtatgtttcagGCACAGATAATGCTTGGCATGGTGTCT
CCACAAATGGTGCCCAATTTCCACCCAGATTCTCTGATATAGTCTAGTGGACAGGGTCAGACTTGTTTAGCACAATTTCAGATTCTCAACCTGGGAAGCAAGCCCAGATGCAGGTTGGGCAGCACTGTCAGGCCCACTGTTACAGCAATCTCAAC