sp|P48622|FAD3D_ARATH ----> Temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic
Intron 1 GTAATAACCT ... TGGACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.98 | 38 | 7 | 13.4 |
| A2 | 12.56 | 20 | 4 | 1.8 |
| A3 | 9.49 | 34 | 5 | 2.2 |
| A4 | 11.76 | 27 | 7 | 0.2 |
| A5 | 8.99 | 10 | 0 | 2.2 |
| A6 | 9.23 | 49 | 9 | 1 |
| A7 | 10.61 | 52 | 8 | 4.4 |
| A8 | 16.04 | 26 | 6 | 4 |
| A9 | 10.88 | 40 | 8 | 1.8 |
| A10 | 10.69 | 29 | 6 | 1 |
>TRINITY_DN115218_c1_g1_i9 from sample A1 / Example spliced isoformTTCCGGGAGGCGTTTGATAAGGGGTAACTCAAATTGCCCTATATCTGCCCGAATCTGGCAGACCATGAAACACTTACAAATCGCCATTTGCAATCTACGTGGCCATGGAAGCTTTTCTAACAACCACAAACTTAACAGTGTGATTGGGCATTTGACACATTCTTCAATCCTCGTACCTTATCATGGCTGGAGAATCAGTC
ATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATGGCATCCTATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTGGCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGAT
CTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCTGGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTACTGGATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCC
ATGGTACAGAGGCAAGGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATACCTCACTACCACCTGGTGGAAGCGACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAA
AGCAATCCGGTCCTCTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGATGAAATCAATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACA
TGTTTCTCTACTCATAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGCTCAAGTTGATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTC
AAAGATCACTTACATGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTATTTCTCAATAAATACCTCTGTA
>TRINITY_DN115218_c1_g1_i5 from sample A1 / Example unspliced isoform:AATTGTGGTTTTGCGAAAGATTCCATGGTTGATGGGACCCCTTAGTTTTAAAGATTGGTGACGCCAGACTCTGTTGGGGAGAAGAACAATAGATTTTGCATTGAGACTAGAAGTTGGCCGGAGAGAAAATATGTGAAAAGGCTCGAAGTCGGAGAAGTAGGGAGGTGGACACGGTATTTCGAAGAGGGGAAGTGTCAGAT
GATCTGAAGCGGATTCCTCGAATCCTCTCGATCAAATTCCACGCGCCTCGCCCGCCCTCCGCCTGCCCACCCCCCGCCTAGTCGAGTCCGGATCTTGCCCTTTATATTACCTTGTCCCTGGTTTCAGTTCATGTTATATAGAACCAGTTCCTTGCATTCGGTATCGGCCACAGCTAATTGTAAAGCTGCAGTTTAGGCCC
ATTTTATTGCTCGGGACTGGTGTTTTGCTTGGTTTTTGACCTAGGTGAGTACCCTTATTTATATGAAAGCAAGAGAACCCAATTCATCCACTTCATCCACGGACAAGCGATAATTGAGGATCTATTGCAGTAATGGCGTTTCCGGTATTGTCTGAAACCTGTGTTTTGAAAACGGTGCATTCTCTTAAAGTCGGCCCTAA
ACACAGGCCCGTGGTTCGTCAAGCAGCTCTCCCTGCTATTGTGGGGCTGAGATCCTTGCCTTCATTGTGTCTGGGCAGATCTTTTCCTAAGCATAAGGGTGTTAGTGCTTTACCTTACAGTCCCTTGCGTAGAGGACCAAGGCTAGGAGGGCAGCCTGCTGTTGCAGTGCCTCTTAGGCATACTTTGGTTCCAGATAATG
AGAATGGTGAAGCAGGCTTTGATCCGAGTGCGCCTCCTCCGTTCAACTTGGCGGACATTCGAGCAGCTATTCCTAAGCATTGTTGGGTGAAGGATCCTTTGAAGTCCATGAGCTATGTTGTGAGGGATGTGGCTGTTGTCATTGGGCTGGCGGCTGCAGCTACATATTTTAACAATTGGGTGTTTTGGCCTATATATTGG
GTTGCTCAGGGGACCATGTTTTGGGCACTTTTTGTGCTTGGACATGATTGTGGCCATGGAAGCTTTTCTAACAACCACAAACTTAACAGTGTGATTGGGCATTTGACACATTCTTCAATCCTCGTACCTTATCATGGCTGGAGAATCAGTCATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATG
GCATCCTATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTGGCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGATCTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCT
GGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTACTGGgtaataaccttgctgaatttccactatggttttcctataaattgcgtcactcccatgttcttggcattttcagcaggactttttaagtttttgctttgtttcatttgagtcatg
ccctgttggagctgactagtattgatagtgcatactctggggactttggatcttttaaaacctgttgcatttatcttaacattgtattgtggaacgtgtcatggactgcagATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCCATGGTACAGAGGCAAGGTACACAT
TGTGCAACTAGCATTTTGGTAATTTTTTGTTAGATTTTTACATGCTTGATAATACTGAGCCTCCAGCCACATTGTAGGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATACCTCACTAC
CACCTGGTGGAAGCGGTGAGTTCTCTTTCATGTTCATTGGCTGTTAACTGCTCTAAATAACTAAGAGTTCCCACCATGCCTCTGAGATTTTCAGATTGTTTGGAGTGAGCACTCCTACAGATTTTGGGCATGCCCTTCATTGAAAAATGCTCAAAGCTCACCACTAGCTCACAACCATGTTGAAAATATGTTCTGACTTT
ACATAATCTAATTTTTCCAAATGACATTATTTTTAATTGTGCGTTGTTTTGGTCAGTATAATAGTGCCATAACATTTGACTGTTCATTCTATTATTTTATTAATCTAGTGGGAATTCTCATTTATCCCTCTGATGCACAGACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAAAGCAATCCGGTCCT
CTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGATGAAATCAATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACATGTTTCTCTACTCA
TAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGCTCAAGTTGATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTCAAAGATCACTTACA
TGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTATTTCTCAATAAATACCTCTGTA
Intron 2 GTGAGTATTG ... CTGCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.04 | 28.7 | 5 | 12 |
| A2 | 10.95 | 42.5 | 2 | 8 |
| A3 | 21.66 | 25.3 | 10 | 4 |
| A4 | 11.52 | 42.5 | 5 | 6 |
| A5 | 9.32 | 10.2 | 0 | 2 |
| A6 | 12.91 | 48.3 | 1 | 13 |
| A7 | 7.58 | 51.5 | 1 | 7 |
| A8 | 10.51 | 25.8 | 0 | 6 |
| A9 | 10.85 | 46.2 | 2 | 9 |
| A10 | 8.31 | 45.7 | 0 | 8 |
>TRINITY_DN115218_c1_g1_i9 from sample A1 / Example spliced isoformTTCCGGGAGGCGTTTGATAAGGGGTAACTCAAATTGCCCTATATCTGCCCGAATCTGGCAGACCATGAAACACTTACAAATCGCCATTTGCAATCTACGTGGCCATGGAAGCTTTTCTAACAACCACAAACTTAACAGTGTGATTGGGCATTTGACACATTCTTCAATCCTCGTACCTTATCATGGCTGGAGAATCAGTC
ATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATGGCATCCTATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTGGCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGAT
CTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCTGGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTACTGGATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCC
ATGGTACAGAGGCAAGGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATACCTCACTACCACCTGGTGGAAGCGACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAA
AGCAATCCGGTCCTCTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGATGAAATCAATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACA
TGTTTCTCTACTCATAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGCTCAAGTTGATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTC
AAAGATCACTTACATGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTATTTCTCAATAAATACCTCTGTA
>TRINITY_DN115218_c1_g1_i7 from sample A1 / Example unspliced isoform:GGAATTTGTTAGTTTGTGTGAGTGGGAGTGTTCTATATTATCCTAAAAACTTTCGCACAGGATGTCTTTGGTGTCCTTTTTGGGGGGAGCATGTTAACAGTATTTTTGAATGTAATTAGAAATTGTGTATTTGCAGGAGAATCAGTCATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATGGCAT
CCTgtgagtattgacatgattcattaacattgcatttcattgattaatgcaggtggtttggttttgccatcattttttttttagtttttgtttctgggtgctcctaatttcactcaaactagctcactgtagtcattctaagttcacaccaaagcacatgacagctccatgctgagataatgcttcgaagaacctcaata
agttacttttgagaagtcccttggaaaagaattagattttcaggactcgattttgattaacagctgttggagtaatgaaggcaatctctgttctaattactcaattttgatttgtctgctttcagATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTG
GCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGATCTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCTGGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTA
CTGGATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCCATGGTACAGAGGCAAGGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATAC
CTCACTACCACCTGGTGGAAGCGACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAAAGCAATCCGGTCCTCTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGA
TGAAATCAATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACATGTTTCTCTACTCATAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGC
TCAAGTTGATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTCAAAGATCACTTACATGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTAT
TTCTCAATAAATACCTCTGTA
Intron 3 GTACACATTG ... CACATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.54 | 50 | 8 | 19 |
| A2 | 25 | 21 | 1 | 7 |
| A3 | 21.91 | 32 | 0 | 9 |
| A4 | 21.05 | 30 | 0 | 8 |
| A5 | 11.11 | 16 | 1 | 2 |
| A6 | 22.89 | 64 | 0 | 19 |
| A7 | 22.99 | 67 | 4 | 20 |
| A8 | 19.42 | 56 | 2 | 13.5 |
| A9 | 13.11 | 53 | 0 | 8 |
| A10 | 23.06 | 35 | 0 | 10.5 |
>TRINITY_DN115218_c1_g1_i9 from sample A1 / Example spliced isoformTTCCGGGAGGCGTTTGATAAGGGGTAACTCAAATTGCCCTATATCTGCCCGAATCTGGCAGACCATGAAACACTTACAAATCGCCATTTGCAATCTACGTGGCCATGGAAGCTTTTCTAACAACCACAAACTTAACAGTGTGATTGGGCATTTGACACATTCTTCAATCCTCGTACCTTATCATGGCTGGAGAATCAGTC
ATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATGGCATCCTATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTGGCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGAT
CTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCTGGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTACTGGATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCC
ATGGTACAGAGGCAAGGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATACCTCACTACCACCTGGTGGAAGCGACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAA
AGCAATCCGGTCCTCTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGATGAAATCAATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACA
TGTTTCTCTACTCATAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGCTCAAGTTGATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTC
AAAGATCACTTACATGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTATTTCTCAATAAATACCTCTGTA
>TRINITY_DN115218_c1_g1_i6 from sample A1 / Example unspliced isoform:AATTGTGGTTTTGCGAAAGATTCCATGGTTGATGGGACCCCTTAGTTTTAAAGATTGGTGACGCCAGACTCTGTTGGGGAGAAGAACAATAGATTTTGCATTGAGACTAGAAGTTGGCCGGAGAGAAAATATGTGAAAAGGCTCGAAGTCGGAGAAGTAGGGAGGTGGACACGGTATTTCGAAGAGGGGAAGTGTCAGAT
GATCTGAAGCGGATTCCTCGAATCCTCTCGATCAAATTCCACGCGCCTCGCCCGCCCTCCGCCTGCCCACCCCCCGCCTAGTCGAGTCCGGATCTTGCCCTTTATATTACCTTGTCCCTGGTTTCAGTTCATGTTATATAGAACCAGTTCCTTGCATTCGGTATCGGCCACAGCTAATTGTAAAGCTGCAGTTTAGGCCC
ATTTTATTGCTCGGGACTGGTGTTTTGCTTGGTTTTTGACCTAGGTGAGTACCCTTATTTATATGAAAGCAAGAGAACCCAATTCATCCACTTCATCCACGGACAAGCGATAATTGAGGATCTATTGCAGTAATGGCGTTTCCGGTATTGTCTGAAACCTGTGTTTTGAAAACGGTGCATTCTCTTAAAGTCGGCCCTAA
ACACAGGCCCGTGGTTCGTCAAGCAGCTCTCCCTGCTATTGTGGGGCTGAGATCCTTGCCTTCATTGTGTCTGGGCAGATCTTTTCCTAAGCATAAGGGTGTTAGTGCTTTACCTTACAGTCCCTTGCGTAGAGGACCAAGGCTAGGAGGGCAGCCTGCTGTTGCAGTGCCTCTTAGGCATACTTTGGTTCCAGATAATG
AGAATGGTGAAGCAGGCTTTGATCCGAGTGCGCCTCCTCCGTTCAACTTGGCGGACATTCGAGCAGCTATTCCTAAGCATTGTTGGGTGAAGGATCCTTTGAAGTCCATGAGCTATGTTGTGAGGGATGTGGCTGTTGTCATTGGGCTGGCGGCTGCAGCTACATATTTTAACAATTGGGTGTTTTGGCCTATATATTGG
GTTGCTCAGGGGACCATGTTTTGGGCACTTTTTGTGCTTGGACATGATTGTGGCCATGGAAGCTTTTCTAACAACCACAAACTTAACAGTGTGATTGGGCATTTGACACATTCTTCAATCCTCGTACCTTATCATGGCTGGAGAATCAGTCATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATG
GCATCCTATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTGGCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGATCTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCT
GGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTACTGGGTAATAACCTTGCTGAATTTCCACTATGGTTTTCCTATAAATTGCGTCACTCCCATGTTCTTGGCATTTTCAGCAGGACTTTTTAAGTTTTTGCTTTGTTTCATTTGAGTCATG
CCCTGTTGGAGCTGACTAGTATTGATAGTGCATACTCTGGGGACTTTGGATCTTTTAAAACCTGTTGCATTTATCTTAACATTGTATTGTGGAACGTGTCATGGACTGCAGATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCCATGGTACAGAGGCAAGgtacacat
tgtgcaactagcattttggtaattttttgttagatttttacatgcttgataatactgagcctccagccacattgtagGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATACCTCACTAC
CACCTGGTGGAAGCGACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAAAGCAATCCGGTCCTCTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGATGAAATCA
ATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACATGTTTCTCTACTCATAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGCTCAAGTTG
ATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTCAAAGATCACTTACATGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTATTTCTCAAT
AAATACCTCTGTA
Intron 4 GTGAGTTCTC ... TGATGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 36 | 13 | 14 |
| A2 | 24.32 | 28 | 15 | 3 |
| A3 | 27.06 | 31 | 15 | 8 |
| A4 | 25 | 27 | 12 | 6 |
| A5 | 12.5 | 14 | 1 | 3 |
| A6 | 23.67 | 79 | 33 | 16 |
| A7 | 18.06 | 59 | 19 | 7 |
| A8 | 20.78 | 61 | 14 | 18 |
| A9 | 18.24 | 65 | 15 | 14 |
| A10 | 25.19 | 49 | 22 | 11 |
>TRINITY_DN115218_c1_g1_i9 from sample A1 / Example spliced isoformTTCCGGGAGGCGTTTGATAAGGGGTAACTCAAATTGCCCTATATCTGCCCGAATCTGGCAGACCATGAAACACTTACAAATCGCCATTTGCAATCTACGTGGCCATGGAAGCTTTTCTAACAACCACAAACTTAACAGTGTGATTGGGCATTTGACACATTCTTCAATCCTCGTACCTTATCATGGCTGGAGAATCAGTC
ATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATGGCATCCTATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTGGCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGAT
CTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCTGGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTACTGGATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCC
ATGGTACAGAGGCAAGGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATACCTCACTACCACCTGGTGGAAGCGACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAA
AGCAATCCGGTCCTCTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGATGAAATCAATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACA
TGTTTCTCTACTCATAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGCTCAAGTTGATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTC
AAAGATCACTTACATGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTATTTCTCAATAAATACCTCTGTA
>TRINITY_DN115218_c1_g1_i5 from sample A1 / Example unspliced isoform:AATTGTGGTTTTGCGAAAGATTCCATGGTTGATGGGACCCCTTAGTTTTAAAGATTGGTGACGCCAGACTCTGTTGGGGAGAAGAACAATAGATTTTGCATTGAGACTAGAAGTTGGCCGGAGAGAAAATATGTGAAAAGGCTCGAAGTCGGAGAAGTAGGGAGGTGGACACGGTATTTCGAAGAGGGGAAGTGTCAGAT
GATCTGAAGCGGATTCCTCGAATCCTCTCGATCAAATTCCACGCGCCTCGCCCGCCCTCCGCCTGCCCACCCCCCGCCTAGTCGAGTCCGGATCTTGCCCTTTATATTACCTTGTCCCTGGTTTCAGTTCATGTTATATAGAACCAGTTCCTTGCATTCGGTATCGGCCACAGCTAATTGTAAAGCTGCAGTTTAGGCCC
ATTTTATTGCTCGGGACTGGTGTTTTGCTTGGTTTTTGACCTAGGTGAGTACCCTTATTTATATGAAAGCAAGAGAACCCAATTCATCCACTTCATCCACGGACAAGCGATAATTGAGGATCTATTGCAGTAATGGCGTTTCCGGTATTGTCTGAAACCTGTGTTTTGAAAACGGTGCATTCTCTTAAAGTCGGCCCTAA
ACACAGGCCCGTGGTTCGTCAAGCAGCTCTCCCTGCTATTGTGGGGCTGAGATCCTTGCCTTCATTGTGTCTGGGCAGATCTTTTCCTAAGCATAAGGGTGTTAGTGCTTTACCTTACAGTCCCTTGCGTAGAGGACCAAGGCTAGGAGGGCAGCCTGCTGTTGCAGTGCCTCTTAGGCATACTTTGGTTCCAGATAATG
AGAATGGTGAAGCAGGCTTTGATCCGAGTGCGCCTCCTCCGTTCAACTTGGCGGACATTCGAGCAGCTATTCCTAAGCATTGTTGGGTGAAGGATCCTTTGAAGTCCATGAGCTATGTTGTGAGGGATGTGGCTGTTGTCATTGGGCTGGCGGCTGCAGCTACATATTTTAACAATTGGGTGTTTTGGCCTATATATTGG
GTTGCTCAGGGGACCATGTTTTGGGCACTTTTTGTGCTTGGACATGATTGTGGCCATGGAAGCTTTTCTAACAACCACAAACTTAACAGTGTGATTGGGCATTTGACACATTCTTCAATCCTCGTACCTTATCATGGCTGGAGAATCAGTCATAGAACGCATCATCAGAATCACGGACATGTAGAGAATGATGAGTCATG
GCATCCTATGTCAGAAAAATTATATAACACTCTGGATGAATCAACCAAGAAGTTACGGTTTACCATCCCATGGCCCCTGTTGGCATATCCTTTCTACCTGTGGGGTAGAACTCCTGGAAAGAAAGGTTCTCACTTTCATCCTGACAGCGATCTATTTGTTCCAAATGAGAAGAAGGATGTCATCACATCAACAGCATGCT
GGACTGCAATGGTGGCTTTGCTAGCTGGACTTACAGTTTTTATGGGTCCTGCATGGATAATAAAGTTCTATGTTATTCCTTACTGGGTAATAACCTTGCTGAATTTCCACTATGGTTTTCCTATAAATTGCGTCACTCCCATGTTCTTGGCATTTTCAGCAGGACTTTTTAAGTTTTTGCTTTGTTTCATTTGAGTCATG
CCCTGTTGGAGCTGACTAGTATTGATAGTGCATACTCTGGGGACTTTGGATCTTTTAAAACCTGTTGCATTTATCTTAACATTGTATTGTGGAACGTGTCATGGACTGCAGATTTTTGTAATGTGGTTAGATCTTGTGACATATCTTCATCACCATGGTCATGATGAGAAGGTTCCATGGTACAGAGGCAAGGTACACAT
TGTGCAACTAGCATTTTGGTAATTTTTTGTTAGATTTTTACATGCTTGATAATACTGAGCCTCCAGCCACATTGTAGGAATGGAGTTATCTCAGAGGAGGGCTTACTACAATTGATCGAGACTATGGCTTGATTAACAATATCCATCATGATATTGGAACCCATGTTGTACATCACTTGTTTCCTCAAATACCTCACTAC
CACCTGGTGGAAGCGgtgagttctctttcatgttcattggctgttaactgctctaaataactaagagttcccaccatgcctctgagattttcagattgtttggagtgagcactcctacagattttgggcatgcccttcattgaaaaatgctcaaagctcaccactagctcacaaccatgttgaaaatatgttctgacttt
acataatctaatttttccaaatgacattatttttaattgtgcgttgttttggtcagtataatagtgccataacatttgactgttcattctattattttattaatctagtgggaattctcatttatccctctgatgcacagACTGAAGCAGTAAAGCCTGTGCTTGGAAAGTATTATCGGGAGCCAAAGCAATCCGGTCCT
CTTCCATTGCACTTGTTGGACCCTCTGGTGAAGAGCATGTCACAAGATCATTATGTTAATGACGAGGGAGATATTGTGTTCTATCAAGCAGACCCTAACATCAATAAGTCCAGAAGATGAAATCAATCTGAAAATTGCAAGAGTATTTTTAACATATAGCATCATTCAGGAGCTATATTCTGGACATGTTTCTCTACTCA
TAAAACACTGAAAGCTGTTATATGATTCGGCCTTTGTATTCTAAGTTTGGATTCAAGGGTCTTGATTATTATCTTTTTGATAATTCATTTTTTAGTTCCACTCCAAAACAGAGTGGCTCAAGTTGATTATTGGTGCTTCTCTGAGTTTTCCCAGAAATTGTGAAAGTATATCTTGGTAAGAAACTCAAAGATCACTTACA
TGTTGGTGGCTAGTATTTCGGTTTCGAAAAAGCTTGGAAAGTCTCTGCAGATTAGAGATGTTAAAGATTTTTTCGATGTACTATATATCTTATTTTAGATATATATATATTATTTATTTCTCAATAAATACCTCTGTA