sp|Q84PB7|THF1_ORYSJ ----> Protein THYLAKOID FORMATION1, chloroplastic
Intron 1 GTGTGATACC ... AGCATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.28 | 57 | 16 | 13 |
| A2 | 28.95 | 54 | 17 | 27 |
| A3 | 33.33 | 39 | 18 | 21 |
| A4 | 28.74 | 31 | 13 | 12 |
| A5 | 21.31 | 24 | 4 | 9 |
| A6 | 22.03 | 154 | 28 | 59 |
| A7 | 23.04 | 177 | 49 | 57 |
| A8 | 24.28 | 198 | 60 | 67 |
| A9 | 23.59 | 183 | 47 | 66 |
| A10 | 24.36 | 104 | 32 | 35 |
>TRINITY_DN117153_c1_g1_i5 from sample A2 / Example spliced isoformTTTCTCTATCTATATATCTTTCTGGCTTCCAGGCCTCAAGTTCTCTCATACTCCACACGGAAATGAGCGACCACATTTGATTTTATTGAATTAGGAGCAATCCAACAACAAACAGAGAGATATATATATTTTACTACCATATAGGGGGATTTAGGTGGAATTTGATATAGATTGAACATGGCAGGAGCCCTGGCTTCAGT
TTGCCCCAGTGGGTTTCGGAGAATAACAGAAAGGACAGCGATTCTACAGGGGATACGCTCATCTAATAATCTTTGTAGCAGTTTTCGATGGCGACTAATCACTGGCCACGACCAACTACTGCTTACGGTTAACATAAGCAGCCGATCACTGCCAGTGGTCTCCTCTCCATTATCTGCTACCCGGTGCTCCATGTCTGTTA
CAGCTTCTGACATTCCTACAGTTGCAGATACCAAGTCAGCATTCCTAAAAGCATATAAAAGGCCTATTCCCAGCATATACAACAATGTTATACAAGAGTTAATAGTGCAGCAACACCTGATGCGTTACAAGAGGACATATCAGTATGATGCAGTATTTGCTCTAGGTTTTGTCAGTGTCTATGACCAACTTATGGATGGA
TACCCCAGTGATGGTGATAACGAAGCAATATTCAGAGCATACATAAATGCATTGAAAGAGGATCCCGAACAGTACAGGAGTGATGCCAAAAAGCTGGAAGAATGGGCTAGTTCACAGGATGCAAAGTCTATTGTTGAATTTCAATCTAGAGATGGAGAGGTCGAGGGAATATTGAAAGATATTGCTGAACGAGCAAGGGA
AAAGAAAAATTTTAACTACAGTCGCTTCTTTGCAATTGGATTGTTTCGGCTACTTGAACGGGCAAATGCTACAGACCCGACTGTTCTGGAGAAGCTATGTGCAGCCTTAAATATAAGCAAGCCCAGTGTTGACAGAGATCTTGATATCTACAGAAATATTCTTTCAAAATTGGTCCAGTCGAAGGAGCTTTTGAAAGAAT
ATGTTGAAAGAGAAAAGAAAAAGAGAACAGAAAGAGAAGCAAACCAAAAATCAAGTGAGGCTGTTGCAAAAATCGAAAGCATCTACTTATAATATTTGTTCTGGAAAGCTTCATCATTTTATTTGTTATGCTTTTAGCCGTATAAAGGCTTTCGGTTCTGTTTTCACCTTCTTCAATTGTGATATTAGCTGCATGCATTG
ATAGCTTTCTTCAAATGCTTTCTTGTAGAAATCAGACGAATCATTACTTCAATGTGTAAGTAGTAAGAGCAAGTCTTTTGTATTTTGCTTTGAGAATGTAGCAATAGCAAGTCTATGGCTATATATTTTGTACTCCGCTTTGAATGAGGATGTAGTAATGGCAAGTATTTTGTATTTTGTTTTGGATGACCTAGTAAAAT
ATTCCTTCTCATTCCTAGTATCTAAGTGATAC
>TRINITY_DN117153_c1_g1_i4 from sample A2 / Example unspliced isoform:TTTCTCTATCTATATATCTTTCTGGCTTCCAGGCCTCAAGTTCTCTCATACTCCACACGGAAATGAGCGACCACATTTGATTTTATTGAATTAGGAGCAATCCAACAACAAACAGAGAGATATATATATTTTACTACCATATAGGGGGATTTAGGTGGAATTTGATATAGATTGAACATGGCAGGAGCCCTGGCTTCAGT
TTGCCCCAGTGGGTTTCGGAGAATAACAGAAAGGACAGCGATTCTACAGGGGATACGCTCATCTAATAATCTTTGTAGCAGTTTTCGATGGCGACTAATCACTGGCCACGACCAACTACTGCTTACGGTTAACATAAGCAGCCGATCACTGCCAGTGGTCTCCTCTCCATTATCTGTTACCCGATGCTCCATGTCTGTTA
CAGCTTCTGACATTCCTACAGTTGCAGATACCAAGTCAGCATTCCTAAAAGCATATAAAAGGCCTATTCCCAGCATATACAACAATGTTATACAAGAGTTAATAGTGCAGCAACACCTGATGCGTTACAAGAGGACATATCAGTATGATGCAGTATTTGCTCTAGGTTTTGTCAGTGTCTATGACCAACTTATGGATGGA
TACCCCAGTGATGGTGATAACGAAGCAATATTCAGAGCATACATAAATGCATTGAAAGAGGATCCCGAACAGTACAGgtgtgatacctttcaccaataaagggtgaatgagcattacagGAGTGATGCCAAAAAGCTGGAAGAATGGGCTAGTTCACAGGATGCAAAGTCTATTGTTGAATTTCAATCTAGAGATGGAGA
GGTCGAGGGAATATTGAAAGATATTGCTGAACGAGCAAGGGAAAAGAAAAATTTTAACTACAGTCGCTTCTTTGCAATTGGATTGTTTCGGCTACTTGAACGGGCAAATGCTACAGACCCGACTGTTCTGGAGAAGCTATGTGCAGCCTTAAATATAAGCAAGCCCAGTGTTGACAGAGATCTTGATATCTACAGAAATA
TTCTTTCAAAATTGGTCCAGTCGAAGGAGCTTTTGAAAGAATATGTTGAAAGGTACAGCATGTATTGCTTTATTTTTTGTTGATTCAAAGCATGTTTCTGCTAGATATTTATTAATTACATTAAAGGCTGCGGAATGTGGTGTCATATTGGTTTCTGTATGTATATGTGGAGCG