sp|Q5BPJ0|TBL11_ARATH ----> Protein trichome birefringence-like 11
Intron 1 GTCAGTAGGT ... GTGATACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.1 | 80 | 16 | 17 |
| A2 | 24.56 | 43 | 16 | 12 |
| A3 | 17.83 | 53 | 11 | 12 |
| A4 | 22.63 | 53 | 13 | 18 |
| A5 | 23.08 | 15 | 5 | 4 |
| A6 | 16.82 | 89 | 26 | 10 |
| A7 | 16.95 | 196 | 30 | 50 |
| A8 | 20.35 | 136 | 37.5 | 32 |
| A9 | 16.18 | 158 | 27 | 34 |
| A10 | 17.78 | 141 | 30 | 31 |
>TRINITY_DN37159_c0_g1_i6 from sample A8 / Example spliced isoformCATTACTCCACGGTGGAGAGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAACCACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAGTGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCC
TTCATCGGCTGTATATGGCCTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTGTTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGTCTCATTATTTCTTGCCGAAGATGCGAGCATACTGTATT
GTCAATGTGATAACCAGAAATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAGAGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGACTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGT
TAAATCAGAGAAAATATGCCTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAGGGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATCTGCTGGACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTC
AGGTGGCAAACTCTGACACACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGGTATGTTCAGTGTTTTTATATTAGGAAACCCAAATTCATTTTAGTATGTCTTGGAATTGAATTGAGTAGAACACGGCACTATTTCTTCTGTCAGTGTTTGTTTATGGATTATAGTTTAGGAAACAGTCAGTTGTATAGACCTACTTA
ATGGATTCCTAATGCAGATTTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTTAGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTCTAAAATGGATCCTCAAGTTTGCAGTGTGAGTATATT
TGGCTTGTCTTCCCTCATTGTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGTTGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATCTTCCCAGGCCTGAGTATTCACAGAGTTTTAACCAAT
GTGACTTGTACACTGGATCATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGAAATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGATTCAATGCAAGCAACATGCTAAATAGGATACGAAAC
CGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAGCACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGT
TTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTGGTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCAGTGGATG
TTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACATCTATGG
AGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGACACATG
GAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCAATGTAA
GTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCTGAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAGATCAATT
TCCAGTTTTGAAAATTCCTTTTCATGAAGGTTCTCGCAAGACAATGTGTGTGATTTTTTTCTACATAATATCC
>TRINITY_DN37159_c0_g1_i7 from sample A8 / Example unspliced isoform:CATTACTCCACGGTGGAGAGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAACCACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAGTGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCC
TTCATCGGCTGTATATGGCCTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTGTTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGTCTCATTATTTCTTGCCGAAGATGCGAGCATACTGTATT
GTCAATGTGATAACCAGAAATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAGAGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGACTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGT
TAAATCAGAGAAAATATGCCTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAGGGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATCTGCTGGACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTC
AGGTGGCAAACTCTGACACACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGATTTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTTAGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTC
TAAAATGGATCCTCAAGTTTGCAGTGTGAGTATATTTGGCTTGTCTTCCCTCATTGTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGTTGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATC
TTCCCAGGCCTGAGTATTCACAGAGTTTTAACCAATGTGACTTGTACACTGGATCATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGAAATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGg
tcagtaggtctctgcccaaagctttctggtgaatgttagtattagtttggagaaagagatggtctgaattggatctggaatttcaatttcagtagaattttaattactttgcagttacatttcaaggcacagggtgaacatggatgcctaataagaatgtagttacatttcagccccgagcttttccaatttaaaatcaa
aattgatattcaattcaagaatgatcagaaagacaccaatggtagccttatactaatgttgtttgatccgagaaagatccgaaagagatgcatggcagtcttatacttatacttgtgtagttgtattcaagaaggatccagaagagaccaattacaatcttatactgatgttgttcaattcaagaaagttcaaaatgaga
ccaatggcattcttatactgactttgtttgtttaatttgaatggtagtcttatattgtttgtttgttctatttggtgtcagaattttcacgaagtttcagattgaataccattagaatgttaaagagaaacttgaacagtctggtagtctttctgggcagatatattctgtgtctgaaccaatttctttttatgtgatac
tagATTCAATGCAAGCAACATGCTAAATAGGATACGAAACCGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAGCACAAGGGATTTTTGTCCTTCAGATTCAAGGAGT
TCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTGGTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGC
TATTTCCAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCC
AACACAAAGTCCAGCTAATTTCCCTGACCCACATCTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGG
ATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGACACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGT
GAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCAATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCTGAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTAC
CATGGACAAGTGACTACTTACTACAATATTAAGATCAATTTCCAGTTTTGAAAATTCCTTTTCATGAAGGTTCTCGCAAGACAATGTGTGTGATTTTTTTCTACATAATATCC
Intron 2 GTAAGCTTTT ... TACGTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.92 | 10.8 | 11 | 5 |
| A2 | 61.7 | 18 | 23 | 0 |
| A3 | 37.5 | 5.3 | 3 | 2 |
| A4 | 63.01 | 17.8 | 26 | 3 |
| A5 | 67.85 | 4.5 | 8 | 0 |
| A6 | 54.83 | 21.3 | 22 | 6 |
| A7 | 63.89 | 46 | 67 | 10 |
| A8 | 61.92 | 45.3 | 62 | 8 |
| A9 | 58.25 | 32.5 | 38 | 3 |
| A10 | 57.19 | 39.5 | 44 | 4 |
>TRINITY_DN99436_c0_g1_i7 from sample A4 / Example spliced isoformAACTTTGAGAAGACCTTGAGAGGAATTTGCACCTCAACTTTTCCATTTGGACTGACGAAGAGAATTTCTCAGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTAT
TCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACATCTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTG
ACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGACACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAAC
CACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCAATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGAC
CTGAGTGACTGGTATGTTGTACAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAGATCAATTTCCAG
>TRINITY_DN99436_c0_g1_i2 from sample A4 / Example unspliced isoform:CGAGGATTTAGAGGGCCACTCCCATCAGTAAGCTTTCCCATTACTCCACGGTGGAGAGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAACCACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAG
TGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCCTTCATCGGCTGTATATGGCCTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTGTTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGT
CTCATTATTCCTTGCCGAAGATGCGAGCATACTCTATTGTCAATGTGATAACCAGAAATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAGAGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGA
CTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGTTAAATCAGAGAAAATATGCCTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAGGGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATTTGCTGG
ACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTCAGGTGGCAAACTCTGACACACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGATTTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTT
AGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTCTAAAATGGATCCTCAAGTTTGCAGTGTGAGTATATTTGGCTTGTCTTCCCTCATTGTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGT
TGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATCTTCCCAGGCCTGAGTATTCACAGAGTTTTAACCAATGTGACTTGTACACTGGATCATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGA
AATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGATTCAATGCAAGCAACATGCTAAATAGGATACGAAACCGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAG
CACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTG
GTGGAACTTTGAGAAGACCTTGAGAGGgtaagcttttactttgtagtttgacagcaatgcaatcgctgaattagtattctttgttagacagttgaagaccttagtcatggaagactacagagtttatgttggtcgtaggttcagatccacaaataagtgaaatgccttaatggtgatcatttgtctgacacgaagcacca
taaaatgtttttggggccatttcttcgtattttttcaaaaaactagattggaaaataaaaaaatataagctaaaacttcacaattcattccatgcgttctatagtttattaaaattgaaaagtttctttacgtgtcagAATTTGCACCTCAACTTTTCCATTTGGACTGACGAAGAGAATTTCTCAGGGGCTGCTATTTC
CAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGG
Intron 3 GTATGTTCAG ... ATCTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 32 | 39 | 80 |
| A2 | 65.15 | 23 | 18 | 43 |
| A3 | 77.94 | 15 | 17 | 53 |
| A4 | 66.25 | 27 | 16 | 53 |
| A5 | 68.18 | 7 | 5 | 15 |
| A6 | 81.65 | 20 | 14 | 89 |
| A7 | 69.01 | 88 | 51 | 196 |
| A8 | 75.98 | 43 | 13 | 136 |
| A9 | 75.96 | 50 | 19 | 158 |
| A10 | 71.21 | 57 | 42 | 141 |
>TRINITY_DN36784_c0_g1_i4 from sample A9 / Example spliced isoformTGAAAACTTATTGAACGGGCCCTTAATTTGAGAAGCTATTATCAGTTACCTCAATTCAATCATTCAATTTCATTGATGACGAGGATTTAGAGGGCCACTCCCATCAGTAAGCTTTCCCATTACTCCACGGTGGAGAGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAAC
CACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAGTGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCCTTCATCGGCTGTATATGGCCTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTG
TTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGTCTCATTATTCCTTGCCGAAGATGCGAGCATACTCTATTGTCAATGTGATAACCAGAAATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAG
AGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGACTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGTTAAATCAGAGAAAATATGCCTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAG
GGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATCTGCTGGACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTCAGGTGGCAAACTCTGACACACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGATTCAATGCAAGCAACATGCTAAATAGGAT
ACGAAACCGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAGCACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTT
TTTTGGTTTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTGGTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCA
GTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACA
TCTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAG
ACACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGC
AATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCTGAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAG
ATCAATTTCCAGTTTTGAAAATTCCTTTTCATGAAGGTTCTCGCAAGACAATGTGTGTGATTTTTTTCTACATAATATCCATGGTGGTTAAAATTGATCTTCCGAG
>TRINITY_DN36784_c0_g1_i1 from sample A9 / Example unspliced isoform:TGAAAACTTATTGAACGGGCCCTTAATTTGAGAAGCTATTATCAGTTACCTCAATTCAATCATTCAATTTCATTGATGACGAGGATTTAGAGGGCCACTCCCATCAGTAAGCTTTCCCATTACTCCACGGTGGAGAGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAAC
CACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAGTGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCCTTCATCGGCTGTATATGGCCTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTG
TTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGTCTCATTATTCCTTGCCGAAGATGCGAGCATACTCTATTGTCAATGTGATAACCAGAAATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAG
AGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGACTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGTTAAATCAGAGAAAATATGCCTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAG
GGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATCTGCTGGACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTCAGGTGGCAAACTCTGACACACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGgtatgttcagtgtttttatattaggaaacc
caaattcattttagtatgtcttggaattgaattgagtagaacacggcactatttcttctgtcagtgtttgtttatggattatagtttaggaaacagtcagttgtatagacctacttaatggattcctaatgcagattttgtagaaaacaaacagttctggcattgaagaaaagaagtaatagaaatatagtgcagaggga
gccctgtaagggattgcactgttgatccatggaaccatcttttagctctcccaagctcttcaaacggttatattgtaactctaaaatggatcctcaagtttgcagtgtgagtatatttggcttgtcttccctcattgtctttttcttctgcttcgtgtacatcgacatcagggcaatacctacagcgcttaggtttcgta
aagaggaagggaaacgcaatctttttgcagaaaattcttctgttgtggaagaggcctctggtattagaagcttcacggatcttcccaggcctgagtattcacagagttttaaccaatgtgacttgtacactggatcatgggtttgggatgaatcatatcccctttaccaatcccccagttgccctttcattgatcccggg
tttcggtgccaggagaatgggcgaccggataaattctacatgaaatggcggtggcaaccttcgggctgcaatcttcccagATTCAATGCAAGCAACATGCTAAATAGGATACGAAACCGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGA
CAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAGCACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGT
ATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTGGTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTC
TTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACATCTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGAC
ACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGACACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCA
CATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCAATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCT
GAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAGATCAATTTCCAGTTTTGAAAATTCCTTTTCATGAAGGTTCTCGCAAGACAATGTGTGTGATTTTTTTCTACATAATATCCATGGTGGTTA
AAATTGATCTTCCGAG
Intron 4 GTAAGCTTTT ... AATTTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.55 | 72 | 9.3 | 38 |
| A2 | 19.05 | 85 | 19.7 | 20 |
| A3 | 38.81 | 41 | 2.5 | 26 |
| A4 | 18.67 | 61 | 22.4 | 14 |
| A5 | 21.62 | 29 | 7.1 | 8 |
| A6 | 30.48 | 146 | 18.9 | 64 |
| A7 | 31.4 | 367 | 57.3 | 168 |
| A8 | 26.26 | 292 | 53.1 | 104 |
| A9 | 29.1 | 251 | 32.3 | 103 |
| A10 | 29.89 | 265 | 37.4 | 113 |
>TRINITY_DN99436_c0_g1_i1 from sample A4 / Example spliced isoformCGAGGATTTAGAGGGCCACTCCCATCAGTAAGCTTTCCCATTACTCCACGGTGGAGAGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAACCACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAG
TGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCCTTCATCGGCTGTATATGGCCTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTGTTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGT
CTCATTATTCCTTGCCGAAGATGCGAGCATACTCTATTGTCAATGTGATAACCAGAAATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAGAGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGA
CTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGTTAAATCAGAGAAAATATGCCTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAGGGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATTTGCTGG
ACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTCAGGTGGCAAACTCTGACACACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGATTTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTT
AGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTCTAAAATGGATCCTCAAGTTTGCAGTGTGAGTATATTTGGCTTGTCTTCCCTCATTGTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGT
TGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATCTTCCCAGGCCTGAGTATTCACAGAGTTTTAACCAATGTGACTTGTACACTGGATCATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGA
AATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGATTCAATGCAAGCAACATGCTAAATAGGATACGAAACCGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAG
CACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTG
GTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGA
AAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACATCTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGC
AATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGACACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAG
GTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCAATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCTGAGTGACTGGTATGTTGTACAATCGCAATTACAACAGTCATGT
GTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAGATCAATTTCCAG
>TRINITY_DN99436_c0_g1_i2 from sample A4 / Example unspliced isoform:CGAGGATTTAGAGGGCCACTCCCATCAGTAAGCTTTCCCATTACTCCACGGTGGAGAGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAACCACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAG
TGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCCTTCATCGGCTGTATATGGCCTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTGTTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGT
CTCATTATTCCTTGCCGAAGATGCGAGCATACTCTATTGTCAATGTGATAACCAGAAATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAGAGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGA
CTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGTTAAATCAGAGAAAATATGCCTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAGGGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATTTGCTGG
ACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTCAGGTGGCAAACTCTGACACACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGATTTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTT
AGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTCTAAAATGGATCCTCAAGTTTGCAGTGTGAGTATATTTGGCTTGTCTTCCCTCATTGTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGT
TGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATCTTCCCAGGCCTGAGTATTCACAGAGTTTTAACCAATGTGACTTGTACACTGGATCATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGA
AATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGATTCAATGCAAGCAACATGCTAAATAGGATACGAAACCGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAG
CACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTG
GTGGAACTTTGAGAAGACCTTGAGAGGgtaagcttttactttgtagtttgacagcaatgcaatcgctgaattagtattctttgttagacagttgaagaccttagtcatggaagactacagagtttatgttggtcgtaggttcagatccacaaataagtgaaatgccttaatggtgatcatttgtctgacacgaagcacca
taaaatgtttttggggccatttcttcgtattttttcaaaaaactagattggaaaataaaaaaatataagctaaaacttcacaattcattccatgcgttctatagtttattaaaattgaaaagtttctttacgtgtcagaatttgcacctcaacttttccatttggactgacgaagagaatttctcagGGGCTGCTATTTC
CAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGG
Intron 5 GTTTGTGTCG ... CCACATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.15 | 123 | 18 | 35 |
| A2 | 14.81 | 92 | 15 | 16 |
| A3 | 19.49 | 95 | 8.6 | 23 |
| A4 | 23.33 | 69 | 6.4 | 21 |
| A5 | 13.46 | 45 | 4.8 | 7 |
| A6 | 16.96 | 240 | 21.9 | 49 |
| A7 | 15.36 | 496 | 53.3 | 90 |
| A8 | 17.19 | 424 | 36.9 | 88 |
| A9 | 16.92 | 378 | 37.2 | 77 |
| A10 | 18.16 | 410 | 39.2 | 91 |
>TRINITY_DN111734_c0_g1_i1 from sample A1 / Example spliced isoformATTTTTTCAAAAAACTAGATTGGAAAATAAAAAAATCTAAGCTAAAACTTCACAATTCATTCCATGCGTTCTATATTTTATTAAAATTGAAAAGTTTCTTTACGTGTCAGAATTTGCACCTCAACTTTTCCATTTGGACTGACGAAGAGAATTTCTCAGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCAG
TGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACAT
CTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGA
CACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCA
ATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCTGAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAGA
TCAATTTCCAGTTTTGAAAATTCCTTTTCATGAAGGTTCTCGCAT
>TRINITY_DN111734_c0_g1_i4 from sample A1 / Example unspliced isoform:ATTTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTTAGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTCTAAAATGGATCCTCAAGTTTGCAGTGTGAGTATATTTGGCTTGTCTTCCCTCA
TTGTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGTTGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATCTTCCCAGGCCTGAGTATTCACAGAGTTTTAACCAATGTGACTTGTACACTGGA
TCATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGAAATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGATTCAATGCAAGCAACATGCTAAATAGGATACGAAACCGTCGAGTAGTCTTTGT
TGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAGCACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTC
CGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTGGTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAG
AGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGgtttgtgtcgtgtctttctaagtttctttatctattgattggattaatctctacaaacttaaatatttagctcttatggtagaatatcctaagaaaagagaatgt
tgaattcccacaatatctcatgttatgagctccacatgcagGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACATCTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACAT
AACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGACACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGT
AGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCAATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGG
TCATCCTGACCTGAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAGATCAATTTCCAGTTTTGAAAATTCCTTTTCATGAAGGTTCTCGCAT
Intron 6 GTATGTTCAG ... CCTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.93 | 71 | 38.6 | 22 |
| A2 | 29.08 | 50 | 18 | 23 |
| A3 | 37.29 | 37 | 17 | 27 |
| A4 | 24.14 | 66 | 16 | 26 |
| A5 | 23.77 | 23 | 5.3 | 9 |
| A6 | 33.07 | 29.4 | 14 | 15 |
| A7 | 30.67 | 127 | 51.4 | 61 |
| A8 | 29.41 | 36 | 13 | 17 |
| A9 | 22.76 | 86 | 19.7 | 31 |
| A10 | 28.7 | 106 | 42.4 | 43 |
>TRINITY_DN111734_c0_g1_i3 from sample A1 / Example spliced isoformGGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAACCACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAGTGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCCTTCATCGGCTGTATATGGC
CTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTGTTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGTCTCATTATTTCTTGCCGAAGATGCGAGCATACTGTATTGTCAATGTGATAACCAGAA
ATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAGAGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGACTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGTTAAATCAGAGAAAATATGC
CTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAGGGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATCTGCTGGACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTCAGGTGGCAAACTCTGACAC
ACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGATTTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTTAGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTCTAAAATGGATCCTCAAGTT
TGCAGTGTGAGTATATTTGGCTTGTCTTCCCTCATTGTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGTTGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATCTTCCCAGGCCTGAGTATTC
ACAGAGTTTTAACCAATGTGACTTGTACACTGGATCATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGAAATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGATTCAATGCAAGCAACATGC
TAAATAGGATACGAAACCGTCGAGTAGTCTTTGTTGGTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAGCACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTAC
AGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTCCGAAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTGGTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGCTATTTCCAGGAAGGAGAGACAGT
AAATATGGCAGTGGATGTTCTGACTGCATTTGAGAGATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCC
CTGACCCACATCTATGGAGCAACAATATCATCATCTCCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCT
GGAGTGCCAGACACATGGAATGAACTGCTGTATGCCTTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAG
AGGCAAAAGCAATGTAAGTATTTCTAAGAGTTTTTAGTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCTGAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTA
CAATATTAAGATCAATTTCCAGTTTTGAAAATTCCTTTTCATGAAGGTTCTCGCAT
>TRINITY_DN111734_c0_g1_i2 from sample A1 / Example unspliced isoform:GGAGTTGCGTGTTTGAAGTGATATATTGTAAAAAGATTGTATCTACTTTCGTCAAAAAAGTAACCACATCATTGAACCGAAATGCAAAAGCATAACGGCCAGCCAAGAGGAAATGGTGGAGAAATGGAAAACCACAGCCCAAGTGCAAGTGCGAGAGAGAGAGACAGTTGCATTTAAGGCCTTCATCGGCTGTATATGGC
CTTCATTGTCATGCATATCTTTGATTGAGGATTTTGCACGTATGAAGTTTACTCTCTTCCACTGTTAAGTACTCCATTACCTTTCAATCATTCGGTTTCCCCCAATCCAGAATTATCAACAAAGCAACCCAGTTGCAGAGGGTCTCATTATTTCTTGCCGAAGATGCGAGCATACTGTATTGTCAATGTGATAACCAGAA
ATCATTAGAAGCAGGGAAGAAAATGAAATAAAGTAGGTCACTTTGGCCTTGGAACTATGCGAAGAGCGGAGTCGGTGCAGAAGGCCTGAAGATGGGCTTAAGGCTGTGATCTCAGGCCTGTTGAGATGGTGGGTACTGTTTGACTGAATCAAATCTGAGATTCAATGAATTGGGTTTCGGTTAAATCAGAGAAAATATGC
CTGGTATATGCGTTACTGGGTTCAATATAGCTTATCTGGGTCATTGAAAAGAGCTCTTGGGTAGGGCCTTATAGGCTTCCTAAGGCTAAATGGCTGTTGTTCTAGTCTTTAGTGCAGAGGAGCCGAAAGCGGATATCTGCTGGACAATTTTGAATGCTTGCAGAGCTCTCTGGACAAGCTCAGGTGGCAAACTCTGACAC
ACAGATGCTGTGCAGGGCAAGACATCCTTTGTGGgtatgttcagtgtttttatattaggaaacccaaattcattttagtatgtcttggaattgaattgagtagaacacggcactatttcttctgtcagtgtttgtttatggattatagtttaggaaacagtcagttgtatagacctacttaatggattcctaatgcagAT
TTTGTAGAAAACAAACAGTTCTGGCATTGAAGAAAAGAAGTAATAGAAATATAGTGCAGAGGGAGCCCTGTAAGGGATTGCACTGTTGATCCATGGAACCATCTTTTAGCTCTCCCAAGCTCTTCAAACGGTTATATTGTAACTCTAAAATGGATCCTCAAGTTTGCAGTGTGAGTATATTTGGCTTGTCTTCCCTCATT
GTCTTTTTCTTCTGCTTCGTGTACATCGACATCAGGGCAATACCTACAGCGCTTAGGTTTCGTAAAGAGGAAGGGAAACGCAATCTTTTTGCAGAAAATTCTTCTGTTGTGGAAGAGGCCTCTGGTATTAGAAGCTTCACGGATCTTCCCAGGCCTGAGTATTCACAGAGTTTTAACCAATGTGACTTGTACACTGGATC
ATGGGTTTGGGATGAATCATATCCCCTTTACCAATCCCCCAGTTGCCCTTTCATTGATCCCGGGTTTCGGTGCCAGGAGAATGGGCGACCGGATAAATTCTACATGAAATGGCGGTGGCAACCTTCGGGCTGCAATCTTCCCAGATTCAATGCAAGCAACATGCTAAATAGGATACGAAACCGTCGAGTAGTCTTTGTTG
GTGATTCAATCGGAAGAAACCAATGGGAATCACTCATTTGCATGCTAGCAGAGGCAGTGCCAGACAAACTCCAAATATATGAGGTGAATGGAAGTCCCATTTCAAAGCACAAGGGATTTTTGTCCTTCAGATTCAAGGAGTTCAATTGCACTGTGGAATATTACAGGGCACCTTTTTTGGTTTTGCAAGGCCGCCCTCCG
AAAGGATCTCCTCCTGAAGTTAGAATTACACTGAAATTGGATTTGGTTGACTGGACATCTCGGTATTGGAAGGATGCAGATATTTTAATCTTCAACACAGGGCATTGGTGGAACTTTGAGAAGACCTTGAGAGGGGGCTGCTATTTCCAGGAAGGAGAGACAGTAAATATGGCAGTGGATGTTCTGACTGCATTTGAGAG
ATCTATGAAGACTGTGATGGAATGGATTCGTCAAGAAGTAAATACAGAAAAGACACATGTATTCTTCCGTAGCTATGCTCCTGTACATTTCAGGGGAGGAACATGGAAAACTGGTGGAAATTGCCATTTAGAGACCCAGCCAACACAAAGTCCAGCTAATTTCCCTGACCCACATCTATGGAGCAACAATATCATCATCT
CCAAAGCACTGGAACAGCTTAATCACACAAAGAATTTGCAGCTACTAAACATAACATATTTGACACAATTGAGGAAGGATGGACACTCATCACTGTATTATTTAGGCAATGGATCTGGACCTGCTGCCCTTGGCAGGCAGGATTGCAGCCATTGGTGTCTTCCTGGAGTGCCAGACACATGGAATGAACTGCTGTATGCC
TTTTTGATTGCAAGAGGCTTTGGAAATTAAGCAACTGCAATTGGCAACATGTAGAATTCAACCACATTCTTTGTAAAGTTAATTATCAATATCAATTCTATCACGAGGTTGTTCTTTTAATCAAATGCCAAGTGAATTTGTGAGGAGGCATTCGGTTCAAGTAGAGGCAAAAGCAATGTAAGTATTTCTAAGAGTTTTTA
GTCACCATTGCATGCCATATTGGGCTGCAAATTGGGAGAGCAAGAGCCATGGTCATCCTGACCTGAGTGACTGGTATGTTGTATAATCGCAATTACAACAGTCATGTGTTGTAACTTGTTGCCAAGCAGCATGTATTCTACCATGGACAAGTGACTACTTACTACAATATTAAGATCAATTTCCAGTTTTGAAAATTCCT
TTTCATGAAGGTTCTCGCAT