sp|Q1PDV6|PBL27_ARATH ----> Serine/threonine-protein kinase PBL27
Intron 1 GTATTTGTCA ... TGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.52 | 22 | 0 | 5 |
| A2 | 15.38 | 33 | 0 | 6 |
| A3 | 16.67 | 15 | 0 | 3 |
| A4 | 21.21 | 26 | 5 | 7 |
| A5 | 27.59 | 21 | 2 | 8 |
| A6 | 2.27 | 43 | 0 | 1 |
| A7 | 11.32 | 47 | 0 | 6 |
| A8 | 9.09 | 20 | 0 | 2 |
| A9 | 12.5 | 21 | 2 | 3 |
| A10 | 14.81 | 46 | 0 | 8 |
>TRINITY_DN92938_c0_g1_i4 from sample A4 / Example spliced isoformAGGAAATTGGAAAGCATTCCTTTCACAACTTTCGTGAGCCTAAAAGCCGATCTTCCACCCATCCCCAATGGCTTTTAACAGAAACAAAGAAAAGCAGAAGTTTGCCAATCTGATGTGCTTGCTTGCTTGCTTTCCTTCACCTCAACTGCTATTGGGCTCTGCTCATACTGAGATAATCTGTTAACAGAGCATAGAAATGA
GTTGTTTTAAATGCTATGGATCTGAAAAGGACGTGAAGCCTCCGAAGCGAGCCGAAGTCAATATCAAGAAGAGCGGAGATGATCAGGGACGCCCAGCTGCTACAGCCAATCAGCTTCCCAAAGCGCTTTCAGATAGATTTAGATCAAAGTCCTCTCATGAGAACAAGCAGGAAGAGCCTCCCAAGACGGAGGAATCTCAT
ATTGCTGCCCAAACATTCACTTTTCGAGAATTGGCTGTAGCAACGAATAATTTTCGGCCTGAGTGCCTACTGGGTGAAGGAGGCTTTGGCAGAGTTTACAAAGGCCGGCTTGAGAGCACCGGTCAGATTGTGGCTGTCAAGCAACTCGACAGGAATGGATTGCAGGGAAACAGGGAATTTCTTGTCGAGGTTTTGATGTT
GAGTCTTCTCCATCATCCAAATCTTGTTAGTCTTATTGGATATTGCGCTGATGGAGATCAGAGGCTTTTAGTATATGAATACTTGTCTTTAGGATCTCTGGAAGACCATCTTTATGATCTCCCGCCTGATAAGGAGCCATTAGATTGGAACACGAGAATGAAAATAGCTGCAGGTGCTGCAAGAGGGTTGGAACATTTGC
ATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGACTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACCAGAGTATGCCATGACAGGCCAGCTGACT
GTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAATCTTGTTCCTTGGGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCAATGCTTCACGGACGCTATCCTATGAGGGGCTTGTATCAAGC
ACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCCTTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGACATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGAGAAAAGGAACAAGGAAAGGAAGGATTCTGATGGATCAGACA
GAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACCTCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCTTTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTGATTGGTCTGATGGGATAAGGGACAGCCCTAGAAATTTTGGG
AGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTGAACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGGAAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCACATGAACTATGAAGTTCTTGTATATCTTTCGTCTTCTCTGT
CATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCATGTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATAGAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGATTTTGAGGTTTTCCCAGTCCTGTTTATAGGAAGGCAATTGT
TACTATCAAGCATTTATGTTATTCAGAGAGGTT
>TRINITY_DN92938_c0_g1_i6 from sample A4 / Example unspliced isoform:ATCTCTGGAAGACCATCTTTATGgtatttgtcattcctagcaagataattggttgtcctttagtttcttttatatgctctgtatttaaaatattaaaaaaaaattcttcctcttaatactgtgatagttgttttatccttgtgaactgatcttgaattttagtgtgtatgaatttgaaatcatgatttgataccatttga
gagaaatattttgttgtgcagATCTCCCGCCTGATAAGGAGCCATTAGATTGGAACACGAGAATGAAAATAGCTGCAGGTGCTGCAAGAGGGTTGGAACATTTGCATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGA
CTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACCAGAGTATGCCATGACAGGCCAGCTGACTGTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAA
TCTTGTTCCTTGGGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCAATGCTTCACGGACGCTATCCTATGAGGGGCTTGTATCAAGCACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCCTTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGA
CATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGAGAAAAGGAACAAGGAAAGGAAGGATTCTGATGGATCAGACAGAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACCTCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCT
TTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTGATTGGTCTGATGGGATAAGGGACAGCCCTAGAAATTTTGGGAGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTGAACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGG
AAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCACATGAACTATGAAGTTCTTGTATATCTTTCGTCTTCTCTGTCATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCATGTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATA
GAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGATTTTGAGGTTTTCCCAGTCCTGTTTATAGGAAGGCAATTGTTACTATCAAGCATTTATGTTATTCAGAGAGGTT
Intron 2 GTTTGTTCTG ... GGCCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.15 | 19 | 6 | 3 |
| A2 | 22.73 | 17 | 1 | 9 |
| A3 | 20 | 18 | 3 | 6 |
| A4 | 26.32 | 21 | 8 | 7 |
| A5 | 21.05 | 15 | 6 | 2 |
| A6 | 23.57 | 60 | 18 | 19 |
| A7 | 29.55 | 31 | 7 | 19 |
| A8 | 29.17 | 34 | 20 | 8 |
| A9 | 26.4 | 46 | 10 | 23 |
| A10 | 24.49 | 37 | 7 | 17 |
>TRINITY_DN92938_c0_g1_i7 from sample A4 / Example spliced isoformCTTGGTTTCTTTGGAATGCTTTGTGCTTGATATCTAATAGTGTGATAGTTGTCACTAGCCTTGTGAACTAATCTTGAAATCTAGTGTTTATGAATTTGATATCATGAGTTGATATCAGTCAAGATAAATTATTTTCTTGCGCAGATCTTCCGCCTGATAAGGAGTCATTAGATTGGAACACGAGAATGAAAATAGCTGCA
GGTGCTGCAAGAGGGTTGGAACATTTGCATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGACTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACC
AGAGTATGCCATGACAGGCCAGCTGACTGTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAATCTTGTTCCTTGGGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCAATGCTTCACGGAC
GCTATCCTATGAGGGGCTTGTATCAAGCACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCCTTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGACATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGAGAAAAGGAACAAG
GAAAGGAAGGATTCTGATGGATCAGACAGAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACCTCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCTTTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTGATTGGTCTGATGG
GATAAGGGACAGCCCTAGAAATTTTGGGAGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTGAACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGGAAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCACATGAACTATGAA
GTTCTTGTATATCTTTCGTCTTCTCTGTCATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCATGTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATAGAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGATTTTGAGGTTTTC
CCAGTCCTGTTTATAGGAAGGCAATTGTTACTATCAAGCATTTATGTTATTCAGAGAGGTT
>TRINITY_DN92938_c0_g1_i2 from sample A4 / Example unspliced isoform:AGGAAATTGGAAAGCATTCCTTTCACAACTTTCGTGAGCCTAAAAGCCGATCTTCCACCCATCCCCAATGGCTTTTAACAGAAACAAAGAAAAGCAGAAGTTTGCCAATCTGATGTGCTTGCTTGCTTGCTTTCCTTCACCTCAACTGCTATTGGGCTCTGCTCATACTGAGATAATCTGTTAACAGAGCATAGAAATGA
GTTGTTTTAAATGCTATGGATCTGAAAAGGACGTGAAGCCTCCGAAGCGAGCCGAAGTCAATATCAAGAAGAGCGGAGATGATCAGGGACGCCCAGCTGCTACAGCCAATCAGCTTCCCAAAGCGCTTTCAGATAGATTTAGATCAAAGTCCTCTCATGAGAACAAGCAGGAAGAGCCTCCCAAGACGGAGGAATCTCAT
ATTGCTGCCCAAACATTCACTTTTCGAGAATTGGCTGTAGCAACGAATAATTTTCGGCCTGAGTGCCTACTGGGTGAAGGAGGCTTTGGCAGAGTTTACAAAGGCCGGCTTGAGAGCACCGGTCAGATTGTGGCTGTCAAGCAACTCGACAGGAATGGATTGCAGGGAAACAGGGAATTTCTTGTCGAGGTTTTGATGTT
GAGTCTTCTCCATCATCCAAATCTTGTTAGTCTTATTGGATATTGCGCTGATGGAGATCAGAGGCTTTTAGTATATGAATACTTGTCTTTAGGATCTCTGGAAGACCATCTTTATGATCTCCCGCCTGATAAGGAGCCATTAGATTGGAACACGAGAATGAAAATAGCTGCAGGTGCTGCAAGAGGGTTGGAACATTTGC
ATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGACTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACCAGAGTATGCCATGACAGGCCAGCTGACT
GTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAATCTTGTTCCTTGGgtttgttctgtcttgcaatactatggtttatttctctgttatctagtctgatcaataaatgctctggacacgaatagttaggacttggaata
atattcatgaaccttgtacatgttataaggactgagtttttgcattaaaatcaagagggttgcttgaattgcatgctcctaatatatatattcctgttataacatggagactagctttgcaaaaagcatctctgctcagtttatccatgcttacttaggctcaagagcttttgtttcataattcattccttattggttta
gtaaattggacagaatttctattcaatgttaaccaggtatgtttcatatggcctggcagGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCAATGCTTCACGGACGCTATCCTATGAGGGGCTTGTATCAAGCACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCC
TTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGACATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGAGAAAAGGAACAAGGAAAGGAAGGATTCTGATGGATCAGACAGAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACC
TCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCTTTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTGATTGGTCTGATGGGATAAGGGACAGCCCTAGAAATTTTGGGAGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTG
AACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGGAAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCACATGAACTATGAAGTTCTTGTATATCTTTCGTCTTCTCTGTCATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCAT
GTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATAGAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGATTTTGAGGTTTTCCCAGTCCTGTTTATAGGAAGGCAATTGTTACTATCAAGCATTTATGTTATTCAGAGAGGTT
Intron 3 GTTTGTTCTG ... GGCCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.45 | 19 | 6 | 5 |
| A2 | 22.73 | 17 | 1 | 9 |
| A3 | 20 | 18 | 3 | 6 |
| A4 | 25 | 21 | 8 | 6 |
| A5 | 21.05 | 15 | 6 | 2 |
| A6 | 25.47 | 60 | 18 | 23 |
| A7 | 31.87 | 31 | 7 | 22 |
| A8 | 30.61 | 34 | 20 | 10 |
| A9 | 25.81 | 46 | 10 | 22 |
| A10 | 25.25 | 37 | 7 | 18 |
>TRINITY_DN43565_c1_g1_i3 from sample A7 / Example spliced isoformAAGAGGAGGAAATTGGAAAGCATTCCTTTCACAACTTTCGTGAGCCTAAAAGCCGATCTTCCACCCATCCCCAATGGCTTTTAACAGAAACAAAGAAAAGCAGAAGTTTGCCAATCTGATGTGCTTGCTTGCTTGCTTTCCTTCACCTCAACTGCTATTGGGCTCTGCTCATACTGAGATAATCTGTTAACAGAGCATAG
AAATGAGTTGTTTTAAATGCTATGGATCTGAAAAGGACGTGAAGCCTCCGAAGCGAGCCGAAGTCAATATCAAGAAGAGCGGAGATGATCAGGGACGCCCAGCTGCTACAGCCAATCAGCTTCCCAAAGCGCTTTCAGATAGATTTAGATCAAAGTCCTCTCATGAGAACAAGCAGGAAGAGCCTCCCAAGACGGAGGAA
TCTCATATTGCTGCCCAAACATTCACTTTTCGAGAATTGGCTGTAGCAACGAATAATTTTCGGCCTGAGTGCCTACTGGGTGAAGGAGGCTTTGGCAGAGTTTACAAAGGCCGGCTTGAGAGCACCGGTCAGATTGTGGCTGTCAAGCAACTCGACAGGAATGGATTGCAGGGAAACAGGGAATTTCTTGTCGAGGTTTT
GATGTTGAGTCTTCTCCATCATCCAAATCTTGTTAGTCTTATTGGATATTGCGCTGATGGAGATCAGAGGCTTTTAGTATATGAATACTTGTCTTTAGGATCTCTGGAAGACCATCTTTATGATCTCCCGCCTGATAAGGAGCCATTAGATTGGAACACGAGAATGAAAATAGCTGCAGGTGCTGCAAGAGGGTTGGAAC
ATTTGCATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGACTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACCAGAGTATGCCATGACAGGCCAG
CTGACTGTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAATCTTGTTCCTTGGGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCAATGCTTCACGGACGCTATCCTATGAGGGGCTTGTA
TCAAGCACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCCTTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGACATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGAGAAAAGGAACAAGGAAAGGAAGGATTCTGATGGAT
CAGACAGAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACCTCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCTTTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTGATTGGTCTGATGGGATAAGGGACAGCCCTAGAAAT
TTTGGGAGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTGAACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGGAAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCACATGAACTATGAAGTTATTGTATATCTTTCGTCTT
CTCTGTCATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCATGTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATAGAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGATTTTGAGGTTTTCCCAGTCCTGTTTATAGGAAGGC
AATTGTTACTATCAAGCATTTATGTTATTCAGAGAGGTTTGCAAACCACTGTTCTTGGTATAATTTTTATTGGTCTCCAAATGGTTGGTGAAAGATTGTGCTTTGATTCTAACCAGCTGCACTGGTGAAGGTAAAAGTAAGCATAATGAAAGGTTGGGTTGCATACTAATAGGTCTTTTATTAGCCCTTTATTAGCAAGG
TTCAACATTCCTTTTGTGCAGGTTTTTCTAATATTAAATATAAATAACTTTAG
>TRINITY_DN43565_c1_g1_i6 from sample A7 / Example unspliced isoform:AAGAGGAGGAAATTGGAAAGCATTCCTTTCACAACTTTCGTGAGCCTAAAAGCCGATCTTCCACCCATCCCCAATGGCTTTTAACAGAAACAAAGAAAAGCAGAAGTTTGCCAATCTGATGTGCTTGCTTGCTTGCTTTCCTTCACCTCAACTGCTATTGGGCTCTGCTCATACTGAGATAATCTGTTAACAGAGCATAG
AAATGAGTTGTTTTAAATGCTATGGATCTGAAAAGGACGTGAAGCCTCCGAAGCGAGCCGAAGTCAATATCAAGAAGAGCGGAGATGATCAGGGACGCCCAGCTGCTACAGCCAATCAGCTTCCCAAAGCGCTTTCAGATAGATTTAGATCAAAGTCCTCTCATGAGAACAAGCAGGAAGAGCCTCCCAAGACGGAGGAA
TCTCATATTGCTGCCCAAACATTCACTTTTCGAGAATTGGCTGTAGCAACGAATAATTTTCGGCCTGAGTGCCTACTGGGTGAAGGAGGCTTTGGCAGAGTTTACAAAGGCCGGCTTGAGAGCACCGGTCAGATTGTGGCTGTCAAGCAACTCGACAGGAATGGATTGCAGGGAAACAGGGAATTTCTTGTCGAGGTTTT
GATGTTGAGTCTTCTCCATCATCCAAATCTTGTTAGTCTTATTGGATATTGCGCTGATGGAGATCAGAGGCTTTTAGTATATGAATACTTGTCTTTAGGATCTCTGGAAGACCATCTTTATGATCTCCCGCCTGATAAGGAGCCATTAGATTGGAACACGAGAATGAAAATAGCTGCAGGTGCTGCAAGAGGGTTGGAAC
ATTTGCATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGACTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACCAGAGTATGCCATGACAGGCCAG
CTGACTGTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAATCTTGTTCCTTGGgtttgttctgtcttgcaatactatgttttatttctctgttatctagtctgatcaataaatgctctggacacgaatagttaggactt
ggaataatattcatgaaccttgtacatgttataaggactgagtttttgcattaaaatcaagagggttgcttgaattgcatgcttgtaatataagcattcctgttgaaaacaaactggctttgcaaaaagcatctatgttcaatttatccatgcttgaattgcatgcttgtaatataagcattcctgttgaaaacaaactg
gctttgcaaaaaacatctatgttcaatttaaggcgtagtagattcaggaacttttgtttcattcttattgtgcatttcttgatcagtttagtaaattggatctcatttctatccaacattaaccaggtatgtttcatatggcctggcagGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCA
ATGCTTCACGGACGCTATCCTATGAGGGGCTTGTATCAAGCACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCCTTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGACATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGA
GAAAAGGAACAAGGAAAGGAAGGATTCTGATGGATCAGACAGAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACCTCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCTTTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTG
ATTGGTCTGATGGGATAAGGGACAGCCCTAGAAATTTTGGGAGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTGAACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGGAAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCA
CATGAACTATGAAGTTATTGTATATCTTTCGTCTTCTCTGTCATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCATGTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATAGAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGA
TTTTGAGGTTTTCCCAGTCCTGTTTATAGGAAGGCAATTGTTACTATCAAGCATTTATGTTATTCAGAGAGGTTTGCAAACCACTGTTCTTGGTATAATTTTTATTGGTCTCCAAATGGTTGGTGAAAGATTGTGCTTTGATTCTAACCAGCTGCACTGGTGAAGGTAAAAGTAAGCATAATGAAAGGTTGGGTTGCATA
CTAATAGGTCTTTTATTAGCCCTTTATTAGCAAGGTTCAACATTCCTTTTGTGCAGGTTTTTCTAATATTAAATATAAATAACTTTAG
Intron 4 GTTTGTTCTG ... GGCCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.45 | 19 | 6 | 5 |
| A2 | 22.73 | 17 | 1 | 9 |
| A3 | 20 | 18 | 3 | 6 |
| A4 | 25 | 21 | 8 | 6 |
| A5 | 21.05 | 15 | 6 | 2 |
| A6 | 25.47 | 60 | 18 | 23 |
| A7 | 31.87 | 31 | 7 | 22 |
| A8 | 30.61 | 34 | 20 | 10 |
| A9 | 25.81 | 46 | 10 | 22 |
| A10 | 25.25 | 37 | 7 | 18 |
>TRINITY_DN92938_c0_g1_i7 from sample A4 / Example spliced isoformCTTGGTTTCTTTGGAATGCTTTGTGCTTGATATCTAATAGTGTGATAGTTGTCACTAGCCTTGTGAACTAATCTTGAAATCTAGTGTTTATGAATTTGATATCATGAGTTGATATCAGTCAAGATAAATTATTTTCTTGCGCAGATCTTCCGCCTGATAAGGAGTCATTAGATTGGAACACGAGAATGAAAATAGCTGCA
GGTGCTGCAAGAGGGTTGGAACATTTGCATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGACTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACC
AGAGTATGCCATGACAGGCCAGCTGACTGTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAATCTTGTTCCTTGGGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCAATGCTTCACGGAC
GCTATCCTATGAGGGGCTTGTATCAAGCACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCCTTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGACATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGAGAAAAGGAACAAG
GAAAGGAAGGATTCTGATGGATCAGACAGAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACCTCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCTTTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTGATTGGTCTGATGG
GATAAGGGACAGCCCTAGAAATTTTGGGAGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTGAACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGGAAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCACATGAACTATGAA
GTTCTTGTATATCTTTCGTCTTCTCTGTCATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCATGTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATAGAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGATTTTGAGGTTTTC
CCAGTCCTGTTTATAGGAAGGCAATTGTTACTATCAAGCATTTATGTTATTCAGAGAGGTT
>TRINITY_DN92938_c0_g1_i9 from sample A4 / Example unspliced isoform:AGGAAATTGGAAAGCATTCCTTTCACAACTTTCGTGAGCCTAAAAGCCGATCTTCCACCCATCCCCAATGGCTTTTAACAGAAACAAAGAAAAGCAGAAGTTTGCCAATCTGATGTGCTTGCTTGCTTGCTTTCCTTCACCTCAACTGCTATTGGGCTCTGCTCATACTGAGATAATCTGTTAACAGAGCATAGAAATGA
GTTGTTTTAAATGCTATGGATCTGAAAAGGACGTGAAGCCTCCGAAGCGAGCCGAAGTCAATATCAAGAAGAGCGGAGATGATCAGGGACGCCCAGCTGCTACAGCCAATCAGCTTCCCAAAGCGCTTTCAGATAGATTTAGATCAAAGTCCTCTCATGAGAACAAGCAGGAAGAGCCTCCCAAGACGGAGGAATCTCAT
ATTGCTGCCCAAACATTCACTTTTCGAGAATTGGCTGTAGCAACGAATAATTTTCGGCCTGAGTGCCTACTGGGTGAAGGAGGCTTTGGCAGAGTTTACAAAGGCCGGCTTGAGAGCACCGGTCAGATTGTGGCTGTCAAGCAACTCGACAGGAATGGATTGCAGGGAAACAGGGAATTTCTTGTCGAGGTTTTGATGTT
GAGTCTTCTCCATCATCCAAATCTTGTTAGTCTTATTGGATATTGCGCTGATGGAGATCAGAGGCTTTTAGTATATGAATACTTGTCTTTAGGATCTCTGGAAGACCATCTTTATGATCTCCCGCCTGATAAGGAGCCATTAGATTGGAACACGAGAATGAAAATAGCTGCAGGTGCTGCAAGAGGGTTGGAACATTTGC
ATGACAAAGCCAACCCTCCAGTCATATATCGTGATTTTAAATCCTCTAATATTTTATTGGATGAGGAATTTCATCCTAAATTATCTGATTTTGGACTGGCCAAACTTGGACCTACTGGAGATAATACACATGTTTCCACACGGGTAATGGGCACTTATGGATACTGTGCACCAGAGTATGCCATGACAGGCCAGCTGACT
GTTAAGTCAGATGTGTACAGTTTCGGAGTGGTTTTGTTGGAGTTAGTAACAGGGAGAAAAGCTATTGACAATTCCCGGCCACCAGGGGAGCACAATCTTGTTCCTTGGgtttgttctgtcttgcaatactatggtttatttctctgttatctagtctgatcaataaatgctctggacacgaatagttaggacttggaata
atattcatgaaccttgtacatgttataaggactgagtttttgcattaaaatcaagagggttgcttgaattgcatgcttgtaatataagcattcctgttgaaaacaaactggctttgcaaaaaacatctatgttcaatttaaggcgtagtagattcaggaacttttgtttcattcttattgtgcatttcttgatcagttta
gtaaattggatctcatttctatccaacattaaccaggtatgtttcatatggcctggcagGCACGACCTATGTTCAAGGACCGTAGAAAGTTTGCACAGATGGCTGATCCAATGCTTCACGGACGCTATCCTATGAGGGGCTTGTATCAAGCACTTGCTGTGGCAGCAATGTGTCTTCAGGAGGACGCTGCCACAAGGCCC
TTGATTGGTGATGTAGTAAAGGCTCTTGGTTACCTTGCATCCCAGACATATGCTCCTTCAGTGCATCCTGCTCAAAATATTCGTGTTGCGCCTTCGACTCCTCCTCGTGAGAAAAGGAACAAGGAAAGGAAGGATTCTGATGGATCAGACAGAGAAAACAATAGGCTAAGTAGACGTGGAAGTAACCAGCCTGCACTACC
TCTTGCAAAGGCGTCCCCTGATCACCGACCTGCTCGTGTTAGGGCTTTGAATGGTTTAAATGAGTCTGGAGGTTCTCAGGAGGGCAGTGGTAGGGATTCTGGAGATTCTGATTGGTCTGATGGGATAAGGGACAGCCCTAGAAATTTTGGGAGAGCGACTAGAGATGGGAATAGAATCTTAGCTGCCAGTCAAGATCGTG
AACGGGCAGTTGCTGAAGCCAAATCATGGGGTGAGAATTTGAGAGGAAGGAAGAAGGGCAATTCTTTTGGTGGCACAGATGGCATTCCCTGAGACTTTGCTTCAGTTGCACATGAACTATGAAGTTCTTGTATATCTTTCGTCTTCTCTGTCATAAATGCTTGTAGTTTCTGTACTCTGATCAGAATCTGTGTATTCCAT
GTGTAAATTTTCATTCCAATCATCAAAGCTGTAAAATCATGTTATAGAACTCAGATGATGCTATATCATGCTAGGAATTTGAATGAGTGCCGCAAGAGGTTCAAGGGAGATTTTGAGGTTTTCCCAGTCCTGTTTATAGGAAGGCAATTGTTACTATCAAGCATTTATGTTATTCAGAGAGGTT