NA ----> NA
Intron 1 GTACGTTTTT ... GACAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.57 | 105 | 0 | 38 |
| A2 | 19.38 | 104 | 4 | 25 |
| A3 | 20.83 | 114 | 4 | 30 |
| A4 | 17.5 | 99 | 2 | 21 |
| A5 | 19.23 | 42 | 3 | 10 |
| A6 | 20.29 | 271 | 0 | 69 |
| A7 | 17.99 | 278 | 4 | 61 |
| A8 | 18.92 | 377 | 0 | 88 |
| A9 | 19.53 | 276 | 0 | 67 |
| A10 | 18.43 | 208 | 3 | 47 |
>TRINITY_DN111372_c5_g1_i5 from sample A3 / Example spliced isoformCACATTTAAAACTACCACCAAGTATTGTTCGGTGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCTATATATATACACA
CATATATCCACTGTGCGGTGGTTTTGTTGGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATCTTGTAAAGGAGCTGGAGGATCTCAAGT
CAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGCTTATGCACGAGTT
AGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCACTACAGTTTGCCGA
GGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAGGCTACCATTGCTC
ACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTTAAGCCCACATGTG
CAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTGTTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATCGTCAGTTTCAACG
TTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACACAGGAAACATA
AGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTGCCAGCCTGTTACTCGATTTCTTATCTCTACAAATGAAGA
CTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATCATATTTAGATGGTAA
GGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTAAAAAAATAATGCTGGGTAA
GAATAGTCATTCTGGAATAATGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCTACAATCTTTTTATTTTTCAATTTTTGTTTGTTTGTACTTTTGTTTATTGGCCCGTTTTCCTTTTCTTTCTAAACGCA
>TRINITY_DN111372_c5_g1_i3 from sample A3 / Example unspliced isoform:TTTGTTCTTGTGTTTTCTATGTTGATTGTAACCTAGTTCTCTTATGAACAGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGgtacgtttttttctcgtgtttagagtttggggtgattattttgagaataactttggcattttacccgtttctttagcaatagagctg
tatggctttccattactctattttctttacctgactttgacacattttgacaatgcagTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGA
GAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTGCCAGCCTGTTACTCGATTTCTTATCTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGC
GAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATCATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTA
GTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTAAAAAAATAATGCTGGGTAAGAATAGTCATTCTGGAATAATGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTC
CTGTGATTAGGAATGCTACAATCTTTTTATTTTTCAATTTTTGTTTGTTTGTACTTTTGTTTATTGGCCCGTTTTCCTTTTCTTTCTAAACGCA
Intron 2 GTAATGGACT ... TGAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.01 | 184.5 | 40 | 4 |
| A2 | 23.42 | 143.3 | 43.5 | 8 |
| A3 | 21.29 | 108.5 | 29 | 2.5 |
| A4 | 21.41 | 97.2 | 26 | 7 |
| A5 | 24.97 | 46 | 15 | 3 |
| A6 | 19.18 | 162.5 | 37.8 | 0 |
| A7 | 24.84 | 251.7 | 82 | 14 |
| A8 | 24.09 | 237 | 74 | 3 |
| A9 | 22.07 | 278.5 | 77.8 | 0 |
| A10 | 22.79 | 245 | 71 | 14 |
>TRINITY_DN107322_c0_g1_i1 from sample A4 / Example spliced isoformACAGGCACTACAGTTTGCCGAGGTTGTGTTCTGGCATAGCTTCTGTCTATGTTCAACGACAGGAACCCTTTATTTTGTTATTCTAATTTAGTTGTTTCCCTTTTCATTGTGTTCACAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATT
GGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAGGCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTT
TCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTTAAGCCCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGC
TTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTGTTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATCGTCAGTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCT
TGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCA
GAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCCTGTTACTCGATTTCTTATCTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGC
AGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATCATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTAT
CTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTAAAAAAATAATGCTGGGTAAGAATAGTCATTCTGGAATAATGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCA
>TRINITY_DN107322_c0_g1_i9 from sample A4 / Example unspliced isoform:ACAGGCACTACAGTTTGCCGAGGTTGTGTTCTGGCATAGCTTCTGTCTATGTTCAACGACAGGAACCCTTTATTTTGTTATTCTAATTTAGTTGTTTCCCTTTTCATTGTGTTCACAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATT
GGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGgtaatggactctagtagatggggaatcacaaaatttagtgtcttgtttcatgaataggtctgaaagcttggcgttgatccattttgtgttggtaatattattgtactt
cctcaagcaatcaactacttgtttgttgaatttcagGCATCAGAAAAGGCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTGTATGTAGAAAAAATCTAATGTTTATTTCCCTCATCTCCTGTTAAAACAAAAGTCATAGAGACTAGCAAGTGCATTGTTCTTAAACAACATGGAATGTTAG
GGATGGCATGTATGCTTTTGTA
Intron 3 GTATGTAGAA ... CGTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.07 | 186 | 25.7 | 33 |
| A2 | 17.12 | 121 | 14.3 | 25 |
| A3 | 11.97 | 103 | 9.7 | 14 |
| A4 | 20.44 | 120.7 | 16.3 | 31 |
| A5 | 14.04 | 49 | 3.3 | 8 |
| A6 | 17.35 | 162 | 13 | 34 |
| A7 | 12.61 | 208 | 19.7 | 30 |
| A8 | 18.82 | 220 | 17 | 51 |
| A9 | 17.06 | 243 | 20.3 | 50 |
| A10 | 14.77 | 202 | 21.3 | 35 |
>TRINITY_DN44591_c0_g2_i6 from sample A7 / Example spliced isoformCCTACCCTTTATCCATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATCCCCGAAAACCTGAACCAGAGTC
ACTCGAGATTTTCTATATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATC
TTGTAAAGGAGCTGGAGGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCA
GAGGCAACGAAGGCTTATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAA
AATTGAACAGGCACTACAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGA
AGGCATCAGAAAAGGCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAA
GCTCAGGAATCTTTAAGCCCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGC
AACGAAGTATCATCGTCAGTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTC
ATACTGGTAATGCACACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCCTG
TTACTCGATTTCTTATCTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGA
GAGAATTTGTACAATCATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGC
AATCGATATTTTAAAAAAATAATGCTGGGTAAGAATAGTCATTCTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCAAT
>TRINITY_DN44591_c0_g2_i5 from sample A7 / Example unspliced isoform:CCTACCCTTTATCCATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATCCCCGAAAACCTGAACCAGAGTC
ACTCGAGATTTTCTATATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATC
TTGTAAAGGAGCTGGAGGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCA
GAGGCAACGAAGGCTTATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAA
AATTGAACAGGCACTACAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGA
AGGTAATGGACTCTAGTAGATGGGGAATCACAAAATTTAGTGTCTTGTTTCATGAATAGGTCTGAAAGCTTGGCGTTGATCCATTTTGTGTTGGTAATATTATTGTACTTCCTCAAGCAATCAACTACTTGTTTGTTGAATTTCAGGCATCAGAAAAGGCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACA
GCAAAGACTgtatgtagaaaaaatctaatgtttatttccctcatctcctgttaaaacaaaagtcatagagactagcaagtgcattgttcttaaacaacatggaatgttagggatggcatgtatgcttttgtatgtatggttctcagactctttatatgctgttgtatgtttttctccaaacaaatatagtacggccatga
atggtggttattagaaggaaaagttgagtatatgcatcataaattaagctagtgttgtcatgtgctttgtgcagttgagaatcgttccatgtttgtataaagtagtgtctgaattagtatgccatccagaaagataattattacattacaataaattgcaagatcactaaattcagttgtttccttgacgtgctctctat
gagttacatcttgttaatctttagtcaaattgggttctttatattgttctaatgattttacagagcattttctgctgtttaggtacgttagaaaattctgagtctctttttctcttcctttcttttcaagaagtatttagtgtcttttctgttatgtattttgtagtagtgtagctcaccatgctttactctaatgtctt
tgtattctggtgcaaatcatgccatcatgtcatatatttgtatgattgaaataagttcgttatgcagCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTA
AAGCTCAGGAATCTTTAAGCCCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACT
GCAACGAAGTATCATCGTCAGTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACAT
TCATACTGGTAATGCACACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCC
TGTTACTCGATTTCTTATCTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTA
GAGAGAATTTGTACAATCATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTT
GCAATCGATATTTTAAAAAAATAATGCTGGGTAAGAATAGTCATTCTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCAAT
Intron 4 GTACACAGTA ... ATCAGACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.65 | 38 | 36 | 3 |
| A2 | 47 | 53 | 47 | 1 |
| A3 | 50 | 63 | 63 | 2 |
| A4 | 49.43 | 44 | 43 | 1 |
| A5 | 56.1 | 18 | 23 | 1 |
| A6 | 49.02 | 26 | 25 | 0 |
| A7 | 48.28 | 75 | 70 | 0 |
| A8 | 50.79 | 31 | 32 | 0 |
| A9 | 46.77 | 66 | 58 | 0 |
| A10 | 49.34 | 77 | 75 | 0 |
>TRINITY_DN111372_c5_g1_i8 from sample A3 / Example spliced isoformCACATTTAAAACTACCACCAAGTATTGTTCGGTGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCTATATATATACACAC
ATATATCCACTGTGCGGTGGTTTTGTTGGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGTCCCAAATCCAGATATCTCCACGTTCCGATCTTGTAAAGGAGCTTGAGGATCTCAAGTC
AAAGGCATCCTCGCTAGGTCCTTGTTATGTTTTTATGAAATCTTGGATATCGGTGTCCTTAAGTTTGCATTTGATGAAAAATCATTTGCAGAGGACACGATTTCAACATTTGTG
>TRINITY_DN111372_c5_g1_i2 from sample A3 / Example unspliced isoform:CACATTTAAAACTACCACCAAGTATTGTTCGGTGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCTATATATATACACAC
ATATATCCACTGTGCGGTGGTTTTGTTGGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGTCCCAAATCCAGATATCTCCACGTTCCGATCTTGTAAAGGAGCTTGAGGATCTCAAGTC
AAAGGCATCCTCGCTAGgtacacagtataagcttgctatgctcataacaattcgatcgattagaactagcagtgggtattgtccatcattttgcaggattagttgtattatttatgtctttgcaattaaagtcaacaaaacaaacatcttctgtaattaattatttttattgcaatcagaccagGTCCTTGTTATGTTTT
TATGAAATCTTGGATATCGGTGTCCTTAAGTTTGCATTTGATGAAAAATCATTTGCAGAGGACACGATTTCAACATTTGTG
Intron 5 GTGCGTATTA ... TTATGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.07 | 92.3 | 2 | 34 |
| A2 | 22.24 | 80.7 | 1 | 23 |
| A3 | 24.2 | 110 | 0 | 35 |
| A4 | 13.19 | 79 | 1 | 12 |
| A5 | 32.01 | 42.7 | 0 | 20 |
| A6 | 26.15 | 226.3 | 0 | 80 |
| A7 | 20.9 | 266 | 0 | 70 |
| A8 | 26.47 | 328.7 | 0 | 118 |
| A9 | 20.1 | 247 | 0 | 62 |
| A10 | 24.34 | 208.7 | 0 | 67 |
>TRINITY_DN42597_c0_g1_i2 from sample A8 / Example spliced isoformCAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCTATAT
ATATACACACATATATCCACTGTGCGGTGGTTTTGTTGGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATCTTGTAAAGGAGCTGGAGG
ATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGCTTAT
GCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCACTACA
GTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAGGCTA
CCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTTAAGC
CCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATCGTCA
GTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGCGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACACA
GGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTGCCAGCCTGTTACTCGATTTCTTATCTCTAC
AAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATCATATTT
AGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTTAAAAAAATAA
TGCTGGGTAAGAATAGTCATTCTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCG
>TRINITY_DN42597_c0_g1_i5 from sample A8 / Example unspliced isoform:CAAAGAACTCGTTTGGTTTATGgtgcgtattatctttttcctttggatgctatttgaagatattttagtcatcatgattaacatttgctttgtattttataatttgattttagtgatgttggtatgaattgccttctgatagatagcacatgagagtagtgttacggctcgtacgatttctggtcaattttagctttcaa
cagtgaaggttttcattggtcaaatatgggccattaaaggacttccctggtccatttggtattgtttatcagcttggctttccataggtcattatcctcgcttatatccttggctcgcctttgcttttatctccttggcttgtttttcctggggatttacaaggacttggttcgaaatatctgtcccgggccagtaaaag
actttcttgggccattggcattatttgtctccttggctcgtctttcctgggagtttactttcacacactccctcacctggtacttatctccctgtttcaggacaatttccaactgttgtgatttatagaattgcatgttttctacgtgtagacacagagagggagagttgaaatacagtaaaacacatcttattatggtg
gctatatttgttcttctgttttctatgttgattgtaacctagttctcttatgaacagGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGCGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACACAGGAAACATAAGCGCAGCAGACATAT
GGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTGCCAGCCTGTTACTCGATTTCTTATCTCTACAAATGAAGACTTCTAGTCCTT
ACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATCATATTTAGATGGTAAGGTTCATAAATT
TTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTTAAAAAAATAATGCTGGGTAAGAATAGTCATT
CTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCG
Intron 6 GTATTAGAAA ... ACCTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.31 | 74.3 | 0 | 30 |
| A2 | 23.66 | 72.3 | 0 | 22 |
| A3 | 27.63 | 67 | 0 | 25 |
| A4 | 39.68 | 48.3 | 1 | 30 |
| A5 | 27.76 | 37.7 | 0 | 14 |
| A6 | 24.1 | 128.7 | 0 | 40 |
| A7 | 28.79 | 185.3 | 1 | 73 |
| A8 | 31.98 | 177 | 0 | 80 |
| A9 | 26.65 | 175.7 | 1 | 62 |
| A10 | 30.51 | 127 | 0 | 54 |
>TRINITY_DN42597_c0_g1_i2 from sample A8 / Example spliced isoformCAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCTATAT
ATATACACACATATATCCACTGTGCGGTGGTTTTGTTGGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATCTTGTAAAGGAGCTGGAGG
ATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGCTTAT
GCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCACTACA
GTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAGGCTA
CCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTTAAGC
CCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATCGTCA
GTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGCGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACACA
GGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTGCCAGCCTGTTACTCGATTTCTTATCTCTAC
AAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATCATATTT
AGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTTAAAAAAATAA
TGCTGGGTAAGAATAGTCATTCTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCG
>TRINITY_DN42597_c0_g1_i1 from sample A8 / Example unspliced isoform:CTGCAACGAAGTATCATCGTCAGgtattagaaatcatctctattaatttttatcccgaatccaactgccgattcatgcatttatggccaaactataaaatagctaatctcgtaatgtgatattagtgcacatgattggagctattggaatttaagttattaaaatcacttgttatagggaggtgttttgtcatgacgaca
tcgctgagtcacaaggttggaaatggtttcttttcctggggcatacccctgccagccttggcttgcccatgacgtgaaacctgtcttcgggatttttttttctctaggcattagttttagccatttatattgagaattgtgtattgttaaccctgttaaaattttgattccaactgaaaagtagtttgacgattttaatg
gtgttacctctgcagTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGCGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATAC
TGGTAATGCACACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGC
Intron 7 GTTGTGTTCT ... GTGTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.09 | 154.2 | 6.2 | 19.4 |
| A2 | 12.02 | 133.8 | 2 | 20.4 |
| A3 | 8.92 | 120.4 | 0 | 13.2 |
| A4 | 15.89 | 63.8 | 4.4 | 12.6 |
| A5 | 12.65 | 36.6 | 2 | 5.6 |
| A6 | 13.69 | 106.4 | 0 | 20.4 |
| A7 | 7.64 | 223 | 0 | 20.4 |
| A8 | 12.25 | 142.4 | 0 | 23.4 |
| A9 | 9.34 | 215 | 0 | 25.2 |
| A10 | 10 | 179.6 | 0 | 22.8 |
>TRINITY_DN124683_c0_g2_i12 from sample A1 / Example spliced isoformATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATCCCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCT
ATATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATCTTGTAAAGGAGCTG
GAGGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGC
TTATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCAC
TACAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAG
GCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTT
AAGCCCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATC
GTCAGTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCA
CACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCCTGTTACTCGATTTCTT
ATCTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAA
TCATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTTAA
AAAAATAATGCTGGGTAAGAATAGTCATTCTGGAATAATGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCTACAATCTTTTTATTTTTCAATTTTTGTTTGTTTGTACTTTTGTTTATTGGCCCGTTTTCCTTTTCTTT
>TRINITY_DN124683_c0_g2_i10 from sample A1 / Example unspliced isoform:AATAAAGTTATCCATGGTTTTTGGTTTTTTTCTAGCTCTTGTATCTTTCATGTTTTTCTACTAGGTAACATTGTTGAACCCCAGAGTGGGCTGAAAAGCTATGCCTATCTCCTTTTAATGTGTTTTTCCTCGACATTTTTTCTAGTTCGTATTTTTAATTAATGTTGTAAAGATTAATTGGTATTGTTATTTATGATTGT
CTTCACCTTTTCCATTTTGGTTGCCAAGCACTTTTCTTGTCGCTCTATTATGAAATTTTAAGATTGATTACTGTTTTTCTGACCAATTTATTTATTTGCAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCACTACAGTTTGCCGAGgttgtgttctggcatagcttctgtctatgt
tcaacgacaggaaccctttattttgttattctaatttagttgtttcccttttcattgtgttcacagGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTATCAATGAATCAATATTTGCATCTTTGGCAAAGCACATTCTAAATGTTCAGTGTGGCTTTAGTTTTGCAGTTTAA
CTGACAACTCTCTACTTTCTCTCGATAATATTTATTTCTACTTTCTCTCGTTAATATTTATTTCTTGAGCAATGCTTTGTTTTTTGTGTTCTTGAATTCAAATCTAAGAGGATGCTAAATATTCTATTCCTGGTTGGAAGCTCCCTTTAGGATACTAAGTACATCCTTGCTGTACGAAAGGCTTTGTACTAAATGCAGAA
TGTCAAGCATTTGGTACAAAGCATTTAGGACAACCCTCCCGGGGGCATGGGAAACACAGGGGGTGCTTGCCCGTGGAACACTGGTATGGACACCATCGGTTTTTTATTCAGTTATAGCCACTGGGTGGACACAGTTTATAAAAACACAGAAACATTCCATGTAGACTGATATCTTGAACCTGTTCTTGAAGAAAGGGTGT
TTCTTTGGGTCCTGTATTAATGATCTGCTGTTGATCCGTGTTCAGTTGACAATTGTAACTGGCATATTTTAGGGGTGGCTATTGTATCCTGTGGTGTTGTAATTGTCTATGGTAATACAGAAATATTTAAAGGCTACACTTATACCTCATTTGAATGAATCTCATATGCATTCTTAGCAGAATAGCCTAGGTGACCTTGT
CTTTGATTATGTATTTTGTATCAGATGAGGCAAAACAGAAGAAGCCTATGGGAGAGGACAAGCGTCATAGATCTCACAAGCAGGCTTATGGAATTTTTCTATGGAAGTAACCTTTAATGGCCTCAAAAGCTAATGAAGGAATGCCAACTGATTGATCGAGGGATATAAATGAACTTGTAACGAAG
Intron 8 GTGTGTCTAG ... ATGTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.56 | 76 | 3.3 | 14 |
| A2 | 15.83 | 101 | 7.5 | 19 |
| A3 | 24.45 | 77.3 | 3.8 | 25 |
| A4 | 19.84 | 101 | 7 | 25 |
| A5 | 17.07 | 34 | 3 | 7 |
| A6 | 12.58 | 139 | 8.5 | 20 |
| A7 | 13 | 207.5 | 13.3 | 31 |
| A8 | 19.06 | 242 | 13 | 57 |
| A9 | 14.6 | 193 | 14.8 | 33 |
| A10 | 15.69 | 172 | 10.5 | 32 |
>TRINITY_DN113347_c0_g2_i4 from sample A2 / Example spliced isoformATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCTAT
ATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGTCCCAAATCCAGATATCTCCACGTTCCGATCTTGTAAAGGAGCTTGA
GGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGCTT
ATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCACTA
CAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAGGC
TACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTTAA
GCCCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATCGT
CAGTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGCGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACA
CAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCCTGTTACTCGATTTCTTAT
CTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATC
ATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTTAAAA
AAATAATGCTGGGTAAGAATAGTCATTCTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCA
>TRINITY_DN113347_c0_g2_i1 from sample A2 / Example unspliced isoform:ATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCTAT
ATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGTCCCAAATCCAGATATCTCCACGTTCCGATCTTGTAAAGGAGCTTGA
GGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGCTT
ATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCACTA
CAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAGGC
TACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTTAA
GCCCACATGTGCAGgtgtgtctagcttttatgattagaagagtggattggattatatggattgcttttaatggaatattaggattgctttaaatcctgatgcaggtttatgcaggttgactatttttttttccgtattgggtttaaagattaatgcattttaacttgccatgaacaatgtcctctgtttaatctggatgt
aaacagACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATCGTCAGTTTCA
ACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGCGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCACACAGGAAAC
ATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCCTGTTACTCGATTTCTTATCTCTACAA
ATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAATCATATTTAG
ATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTTAAAAAAATAATG
CTGGGTAAGAATAGTCATTCTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCA
Intron 9 GTATGTAGAA ... CGTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.17 | 186 | 61 | 33 |
| A2 | 19.87 | 121 | 35 | 25 |
| A3 | 15.92 | 103 | 25 | 14 |
| A4 | 20.39 | 121 | 31 | 31 |
| A5 | 15.52 | 49 | 10 | 8 |
| A6 | 18.39 | 162 | 39 | 34 |
| A7 | 15.96 | 208 | 49 | 30 |
| A8 | 17.36 | 219 | 41 | 51 |
| A9 | 18.59 | 243 | 61 | 50 |
| A10 | 16.7 | 202 | 46 | 35 |
>TRINITY_DN45557_c0_g1_i3 from sample A10 / Example spliced isoformCCTTTAGCCATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAG
ATTTTCTATATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGTCCCAAATCCAGATATCTCCACGTTCCGATCTTGTAAA
GGAGCTTGAGGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAA
CGAAGGCTTATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAATTGAA
CAGGCACTACAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATC
AGAAAAGGCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGG
AATCTTTAAGCCCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAG
TATCATCGTCAGTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGG
TAATGCACACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCCTGTTACTCGATTT
CTTATCTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTA
CAATCATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTT
TAAAAAAATAATGCTGGGTAAGAATAGTCATTCTGGAATATTGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCTC
>TRINITY_DN45557_c0_g1_i1 from sample A10 / Example unspliced isoform:CCTTTAGCCATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATACCCGAAAACCTGAACCAGAGTCACTCGAG
ATTTTCTATATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGTCCCAAATCCAGATATCTCCACGTTCCGATCTTGTAAA
GGAGCTTGAGGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAA
CGAAGGCTTATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAATTGAA
CAGGCACTACAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATC
AGAAAAGGCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTgtatgtagaaaaaatctaatgtttatttccctcatctcctgttaaaacaaaagtcatagagactagcaagtgcattgttcttaaacaacatggaatgttagggatggcatgtatgcttttgtatgtatggttctcagactct
ttatatgctgttgtatgtttttctccaaacaaatatagtacggccatgaatggtggttattagaaggaaaagttgagtatatgcatcataaattaagctagtgttgtcatgtgctttgtgcagttgagaatcgttccatgtttgtataaagtagtgcctgaattagtatgccatccagaaagataattattacattacaa
taaattgcaagatcactaaattcagttgtttccttgacgtgctctctatgagttacatcttgttaatctttagtcaaattgggttctttatattgttctaatgattttacagagcattttctgctgtttaggtacgttagaaaattctgaaagtctctttttctcttcctttcttttcaagaagtatttagtgtcttttc
tgttatgtattttgtagtagtgtagctcaccatgctttactctaatgtctttgtattctggtgcaaatcatgccatcatgtcatatatttgtatgattgaaataagttcgttatgcagCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAAT
CGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTTAAGCCCACATGTGCAGGTGTGTCTAGCTTTTATGATTAGAAGAGTGGATTGGATTATATGGATTGCTTTTAATGGAATATTAGGATTGCTTTAAATCCTGATGCAGG
Intron 10 GTTAGGGTTT ... AACATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.74 | 149 | 39 | 13 |
| A2 | 25.75 | 124 | 43 | 0 |
| A3 | 25 | 147 | 49 | 12 |
| A4 | 20.14 | 115 | 29 | 8 |
| A5 | 20.69 | 46 | 12 | 2 |
| A6 | 20.13 | 123 | 31 | 5 |
| A7 | 15.18 | 285 | 51 | 14 |
| A8 | 18.5 | 141 | 32 | 4 |
| A9 | 19.06 | 225 | 53 | 6 |
| A10 | 14.24 | 259 | 43 | 9 |
>TRINITY_DN124683_c0_g2_i12 from sample A1 / Example spliced isoformATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATCCCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCT
ATATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATCTTGTAAAGGAGCTG
GAGGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGC
TTATGCACGAGTTAGTGATCTGGAGGAACAGGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGCTGCAAGATGTTGTTACGGAACAAAAGGCCCGTATACAAAAAGTTGAACAGGCAC
TACAGTTTGCCGAGGCAACAATGTTAAAATCTCAAGCAGAAGCTAAGGTGAAGGCAGAAGCGCTGATGGAGGTCCATGGTGCCTGGCTACCACATTGGCTTGCAGTTCGTCTAGTTAAATTTCAGACATATGCAGAGGAACATTGGGCAAAACATGCGAAGCCTGCCATAAATGTTGTTCTAGAGAAGGCATCAGAAAAG
GCTACCATTGCTCACAACTGGGCAAGACCACATCTTGAAACAGCAAAGACTCAGTGGAGCCCTGCTCTGAAGAAACAGTGGCAGCAAGCCATGGTTTCTCTTGCACCACATGTGGAGACTCTAAAAACTAAATCGATTGAGGGTTATGAGGTGTCTAGGGATGCCATCAAGCCACATCTTGTTAAAGCTCAGGAATCTTT
AAGCCCACATGTGCAGACAGTCAAGGATCTTTGTGGCCCTTACATAGATCAAGTCGTTGCTGCTTCAAGACCTCATATTGAAAAAGTTGTCGCTGCTTCACAACCTCATATTGAGAAAGCGACTGTCATTTTGCAACCATATACAAAACCTATTGCCAATGCCTACGGAAGATTTCTCACAACTGCAACGAAGTATCATC
GTCAGTTTCAACGTTCTGTGAGACAGACACTAAAAAAGTATGATCTTACATCTCCTTTGGCTACCAAAGAACTCGTTTGGTTTATGGCATCTGCCTTGTTGGCGTTGCCAGTGTTTGGCATATTGATGGCGTATTCATCCATTTTCGGTGGTGGTAAGAAGGCCCGGAAACCTAGTCGAAACATTCATACTGGTAATGCA
CACAGGAAACATAAGCGCAGCAGACATATGGACAAGTGATTCTGTCAAATGGGTCAATTCTTGTGTGGATTTTGTTTTATTGTTTAAAGAGAAGCGCATAGAGTTGAAGATCAGAATCGTGTGTGGATTAATCTTGTAACAAGTGGCTTTTGGGAATGTGGAGCTGAGGCGTCTATTACCAGCCTGTTACTCGATTTCTT
ATCTCTACAAATGAAGACTTCTAGTCCTTACAGCTTCTATTTCTCATTTTAATGCATATTGGTCAAGAGTCGTGGCAGCTCTAACAGTGCGAAATGAAGCAGTACATTGGAAGGGTATATGGCAAATTTCATTGTTTAGCATGTCAAAATGAAGTTTATGATTTAACGAGTCTGCAAACAATTAGAGAGAATTTGTACAA
TCATATTTAGATGGTAAGGTTCATAAATTTTACCAACTGAGCTCAAATTTTATCGGAAACTCAATTATATAGATTTACAGAGGCACTTTAGTCGATGTATCTTAGTCTGCGTGGGGGATGGTCCTCGCGTTTAACCGTGGCTAGCATTTGTTTTTGGGCTGTATTTAAGAACATGCTTTTGTTTGCAATCGATATTTTAA
AAAAATAATGCTGGGTAAGAATAGTCATTCTGGAATAATGTGAGAGACTAGATTTCAAAGAAATATAATATTATATGCCTCAACCATACTCCTGTGATTAGGAATGCTACAATCTTTTTATTTTTCAATTTTTGTTTGTTTGTACTTTTGTTTATTGGCCCGTTTTCCTTTTCTTT
>TRINITY_DN124683_c0_g2_i9 from sample A1 / Example unspliced isoform:ATCACAGATGCCCACATTTAAAACTACCACCAAGTATTGTTCGGTGGGAGTGAAAACCATCACTACATTTGTCAGTCCCAGCCCTAAAACCATATTTCTCTGGCTTCCCAGACCCTTGAACCCCCATCCGACCGCAACGTGGCGGTCGCATCAAACCCTACATCCCCGAAAACCTGAACCAGAGTCACTCGAGATTTTCT
ATATATATACACACATATATCCACTGTGCGGTGGTTTTGTTCGAAAGACTCTGCCGATGGAATCAATGGCGATCGAGAAGTATGTCGTGCTGGTGCTTTTGCTCGGTCTTCTTGCGCTCGGGGCCAGGGGAGATGCAGGATTCGAACCGCAGGAGCCCCAAATCCAGATATCTCCAGGTTCCGATCTTGTAAAGGAGCTG
GAGGATCTCAAGTCAAAGGCATCCTCGCTAGAGTCGATGATCGAGGAGAAAAAATCTGCTTTAAGGGAAAAGGAGTTACTCATTGCCGAAAGAGAGAAATTATTAGAAGAAAAGTCCAAAGATATCTCATTATTGCAGAATGAGATCGACACAATTCAGAAAAAAGGAGCAGGAGATTTGGAGGCAGAGGCAACGAAGGC
TTATGCACGAGTTAGTGATCTGGAGGAACAGgttagggtttcatcttaaaagatttgtagattagaaattactatgacaatcctgcttaaggaagtttgaagttttatatgttccctgttggcattttacatagattttgatcatttacttttgtagccagttcactaccaaaagcaatagatgctatgttgattctcgc
tatgtgtataaacattttagGTGAAAAAGCTTGAAGAGGTTTTAAGAGAGCAAAAGCAAAGACAACACAGTTTAGAATTGCAGGCGAGCAAAGCTGAGAATCAAGCAAAAGATTTTTCTGCTAAAAATAAAAAGGTAAGCATGAGTGCTAATCATCGTAATAATAGAAATATAGTTGTATGTTGCTTACGAAAAAATAAT
TGCATGGTGTAAAATTTCCCTCGTGAAACGTGCTAGAACTTATAAAATCAACTGATCTTTTACTTGAGTAACAAGGTTTCTTTTGAGTTGTGGAAAACTCCTTTTACACCAAGGCAAGTGAGGTGGTCTTACAACCTAGGGTGGGAGAGTTTTATGTGTAATCATGATGTGGGTAACATTGATAAAATAAGATTGGAAAA
AAATGATGTCTGATGTTTATTTCAAAAAAGAAAAGCCGGTGTAATAAAAATAAATTATAAAATAAAATGGTGTAAACCTCGGATCTTTTCAGGGGCTGAAAGGCTTACATCTTGTTTTTTTATTCCTCATTGATCTTAATAGATCCAGGGTTAAGATAATAGATCTAGGGTTAAGATGGATCTAAGCTAGTTGCATTCAC
ATGTTACTACTTCAAAATTATATTTTCAATAGGATAATAAAAGAACTGTATTTATAGATGTTAATGTTATCAGCAATGTTACAAAAACCAGAC