NA ----> NA
Intron 1 GTATTTTGAC ... TATGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.67 | 25 | 7 | 3 |
| A2 | 30.43 | 8 | 2 | 5 |
| A3 | 20 | 2 | 0 | 1 |
| A4 | 5.88 | 16 | 2 | 0 |
| A5 | 7.69 | 6 | 1 | 0 |
| A6 | 18.95 | 62 | 8 | 21 |
| A7 | 24 | 57 | 11 | 25 |
| A8 | 19.28 | 67 | 10 | 22 |
| A9 | 13.73 | 66 | 9 | 12 |
| A10 | 14.97 | 71 | 9 | 16 |
>TRINITY_DN41831_c0_g1_i3 from sample A7 / Example spliced isoformTCCCGATGACGACGATGAATAATTGCAGTGGCAAAGTCCAAAATATTTGATTGAACAACAGGAAGTGAAGTGAAAATCCTGAGACAGATCACGTTGCACTGTACCTGCATCACGTTATGCCACAGTAAAGGTGACAGATAGCCAGACAGGTTTGACCCTCAGCTTTTAGCCCTGAATTTTATCCCGGCAAATTAAAGGGT
TTAGAGGAATAAAAATACACACCAGTCTGTATTCCCGAATCGGAGGCTTCGAACTCGTGGCCTTGGACGAAAGCTTCTAGGCTTCACTGTTTGCAGTTGAAGGATTCGAACTCGAGACTTACAGTCCAAGCTTTGGTTTCTGTCAAGCTTGAAATTTTGCATTTGATGGTTTTGAAGTCGTGATCCAAGTGCCAGCCTCA
GTTCTTCTTAGAATTTTGCCTTTGGAGGCGTCGAACTAGTGACATCGAATCGACGCACTGCAATCATTATGCTATGTCTGAAACGACAAGTCGGGGTTTAGGGAGAAACCAGTGCTTGGAGTTGAGGTGGTCCAAAATACTAGAAAACAGCTTTTGGAAATTGTCTGGTGGTTTCTTCGGCAGTTGCAAGGTTCCTTACT
TGTCATAGTCCCCAATTTGGGCATTCTCAGCTGATGCGGGAAAAGGGATGACGGACATTTGCATTTCCTTTTTAAAGATCCGCCGAAATGTGTGATGTCTCCGACGCTATTCATAAAGTTTATGCTCTTGCCGACATCGCAGAGCGCAGGACCTTTTACACAGGGATGATGCCGGAATGCTATGCGATTTCAAATAAGGA
TTTGCTAGCTGGAAAGTCATCCAAAAAACCACTCCTAATATGGAGGGTGTTATTTCTTATTTTTATGGCAATATGTGGTCTATACATGTTCTCTGTCTGCGTTAGACAAAGAAATATGAATGTCAAATCAAGATATATACTCAGACAAGTTCTGGATAAAATCCCTTGCCAAAAGCCAGTTATCAGATTAGAAGACAGTG
TTTCTTTACACTTTCCTCTTCCCAGGACACATACGAGAGATGAATGTGCCTGCACACCTGTGCATTTTTTTGCTATATTATCCATGCAGAGGTCTGGCAGTGGGTGGTTTGAAACATTACTGAATAGCCATCCTAATATTAGTTCACATGGAGAGATCTTTTCAGTGAAAGAAAGACGACAAAACTTCTCCATCATTTCT
CACACATTAGATACAGTTTACAATCTGGATTGGACCAGCAGTTCTGTCAAGAATGAATGCACAGCTGCAGTAGGCCTTAAATGGATGCTTAACCAGGGTGCACTGGAGTACAATAGAGAAGTAGTAGACTATTTTAATAAAAGGGGCATCTCTGTGATTTTGTTGTTTAGGCGTAACCTTTTACGGCGGCTGATCTCTGT
CTTAGCAAATGCCTATGATCGCAATGCAAAGCAACTGAATGGCACACACAAGTCCCATGTCCACTCAAAGCAAGAGGCAGAGCTGTTGGCTGCATATAAGCCACTAATCAATGTGACTTTCTTGCGAACTAATCTACATCGTGTAGAGGAATTGACACATGATGCCGTGAAGTTATTTAATAGTACTCATCATATGTTAT
TATACTACGAGAACTTGATAAAGGATCAAAGGAAAATGATGGAAGTTCAGGAATTTCTCAAAGTGCCTCCACGTAAATTAGAGAGCAGGCAAGTGAAAATTCACACACGGCCACTTTCAGAGCAGATTCAGAACAGGGATGAGGTACACAAAAAACTAAAGGGTACAGAGTATGAGGCCTTTTTGAAGGAGACAGATTAT
GATATGTGAATCTGTGATAAGGAGGTGGAATGATTGTTAAAACTGATTGTAATTAGCTTCTTGGTGTAAATAAATTATATTCATTCATTTTTTCTAGTCAAGGCTATATGAAATTGTTCCACTCATAACAGGCAAGCTGGGATGTCTGTTCCAGCTTATATTCTGGAGTTATTCTATGCCAATACTAGTCTACATGTGTG
ATCTTTCAATTTAAATTGTAAGGTGTTCCACTCGAGTATTCTTTGAGAATCAGTGGAAGAAATTTCATTCCATTCATTGTTCTCTAGAGAAACTTCTAGAGAAAGATAGGTCCTCCATTTTCAGAATAGGTGGCGTTGATTGCATGTTACAGTTTGCTTCTTTATTTTATACTGGCATATGGGGTTTGACAAAGTTTTCA
ATCTAAAGAAAGATTCAAAGAACGGCTAGACACTGGTACCTTGAGCAAATGACATATATTTTGGCTTATCTGGAAGGTCATGTTTCTGTGGCCAACGTGTGTTTTGTAACTGCTCTTATTTTCAAAGTTACATAGCTCAGACTCAACAAGCCAAATGTACTAGTTGGCTTGCCACTTAGCAAAAGCTCAGCAGACTAAAA
ATATATAAAATATGTAGAAAGAGAGAATTCCATTCCATGACAAACACATTCTTTAGACA
>TRINITY_DN41831_c0_g1_i1 from sample A7 / Example unspliced isoform:CCATGTCCACTCAAAGCAAGAGGTTTGTAGTAAAGGATGAAGAAATCCAAATTTGTTTTCTTAGCAGATTCTACATGTTTTGGGCACAACGAAGGCACTGTCTTCTTTGAAGCTATATATATATTCAGAATTTTCTTTGACACAGTAGTGATCTAAAAGCTTCAATTTGTCATGTTTTGTAGGCAGAGCTGTTGGCTGCA
TATAAGCCACTAATCAATGTGACTTTCTTGCGAACTAATCTACATCGTGTAGAGGAATTGACACATGATGCCGTGAAGTTATTTAATAGTACTCATCATATGTTATTATACTACGAGAACTTGATAAAGGATCAAAGGgtattttgacagcattgctattaatagtttatctttgagttaaatatcagtttatattctct
ctatgtttccagataaattgcatctcaattttaataaacctcaaatgacaaggattcctttgtttattgtcgttatgtagctgaaagagtgaaatgatagaaatctcacttcattcgttgttatgtatcagAAAATGATGGAAGTTCAGGAATTTCTCAAAGTGCCTCCACGTAAATTAGAGAGCAGGCAAGTGAAAATT
CACACACGGCCACTTTCAGAGCAGATTCAGAACAGGGATGAGGTACACAAAAAACTAAAGGGTACAGAGTATGAGGCCTTTTTGAAGGAGACAGATTATGATATGTGAATCTGTGATAAGGAGGTGGAATGATTGTTAAAACTGATTGTAATTAGCTTCTTGGTGTAAATAAATTATATTCATTCATTTTTTCTAGTCAA
GGCTATATGAAATTGTTCCACTCATAACAGGCAAGCTGGGATGTCTGTTCCAGCTTATATTCTGGAGTTATTCTATGCCAATACTAGTCTACATGTGTGATCTTTCAATTTAAATTGTAAGGTGTTCCACTCGAGTATTCTTTGAGAATCAGTGGAAGAAATTTCATTCCATTCATTGTTCTCTAGAGAAACTTCTAGAG
AAAGATAGGTCCTCCATTTTCAGAATAGGTGGCGTTGATTGCATGTTACAGTTTGCTTCTTTATTTTATACTGGCATATGGGGTTTGACAAAGTTTTCAATCTAAAGAAAGATTCAAAGAACGGCTAGACACTGGTACCTTGAGCAAATGACATATATTTTGGCTTATCTGGAAGGTCATGTTTCTGTGGCCAACGTGTG
TTTTGTAACTGCTCTTATTTTCAAAGTTACATAGCTCAGACTCAACAAGCCAAATGTACTAGTTGGCTTGCCACTTAGCAAAAGCTCAGCAGACTAAAAATATATAAAATATGTAGAAAGAGAGAATTCCATTCCATGACAAACACATTCTTTAGACA
Intron 2 GTTTGTAGTA ... TGTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10 | 27 | 0 | 3 |
| A2 | 13.33 | 13 | 0 | 2 |
| A3 | 13.33 | 13 | 0 | 2 |
| A4 | 27.27 | 16 | 0 | 6 |
| A5 | 33.33 | 6 | 1 | 3 |
| A6 | 12.5 | 70 | 2 | 10 |
| A7 | 24.47 | 71 | 0 | 23 |
| A8 | 24.42 | 65 | 0 | 21 |
| A9 | 17.72 | 65 | 0 | 14 |
| A10 | 21.65 | 76 | 0 | 21 |
>TRINITY_DN41831_c0_g1_i3 from sample A7 / Example spliced isoformTCCCGATGACGACGATGAATAATTGCAGTGGCAAAGTCCAAAATATTTGATTGAACAACAGGAAGTGAAGTGAAAATCCTGAGACAGATCACGTTGCACTGTACCTGCATCACGTTATGCCACAGTAAAGGTGACAGATAGCCAGACAGGTTTGACCCTCAGCTTTTAGCCCTGAATTTTATCCCGGCAAATTAAAGGGT
TTAGAGGAATAAAAATACACACCAGTCTGTATTCCCGAATCGGAGGCTTCGAACTCGTGGCCTTGGACGAAAGCTTCTAGGCTTCACTGTTTGCAGTTGAAGGATTCGAACTCGAGACTTACAGTCCAAGCTTTGGTTTCTGTCAAGCTTGAAATTTTGCATTTGATGGTTTTGAAGTCGTGATCCAAGTGCCAGCCTCA
GTTCTTCTTAGAATTTTGCCTTTGGAGGCGTCGAACTAGTGACATCGAATCGACGCACTGCAATCATTATGCTATGTCTGAAACGACAAGTCGGGGTTTAGGGAGAAACCAGTGCTTGGAGTTGAGGTGGTCCAAAATACTAGAAAACAGCTTTTGGAAATTGTCTGGTGGTTTCTTCGGCAGTTGCAAGGTTCCTTACT
TGTCATAGTCCCCAATTTGGGCATTCTCAGCTGATGCGGGAAAAGGGATGACGGACATTTGCATTTCCTTTTTAAAGATCCGCCGAAATGTGTGATGTCTCCGACGCTATTCATAAAGTTTATGCTCTTGCCGACATCGCAGAGCGCAGGACCTTTTACACAGGGATGATGCCGGAATGCTATGCGATTTCAAATAAGGA
TTTGCTAGCTGGAAAGTCATCCAAAAAACCACTCCTAATATGGAGGGTGTTATTTCTTATTTTTATGGCAATATGTGGTCTATACATGTTCTCTGTCTGCGTTAGACAAAGAAATATGAATGTCAAATCAAGATATATACTCAGACAAGTTCTGGATAAAATCCCTTGCCAAAAGCCAGTTATCAGATTAGAAGACAGTG
TTTCTTTACACTTTCCTCTTCCCAGGACACATACGAGAGATGAATGTGCCTGCACACCTGTGCATTTTTTTGCTATATTATCCATGCAGAGGTCTGGCAGTGGGTGGTTTGAAACATTACTGAATAGCCATCCTAATATTAGTTCACATGGAGAGATCTTTTCAGTGAAAGAAAGACGACAAAACTTCTCCATCATTTCT
CACACATTAGATACAGTTTACAATCTGGATTGGACCAGCAGTTCTGTCAAGAATGAATGCACAGCTGCAGTAGGCCTTAAATGGATGCTTAACCAGGGTGCACTGGAGTACAATAGAGAAGTAGTAGACTATTTTAATAAAAGGGGCATCTCTGTGATTTTGTTGTTTAGGCGTAACCTTTTACGGCGGCTGATCTCTGT
CTTAGCAAATGCCTATGATCGCAATGCAAAGCAACTGAATGGCACACACAAGTCCCATGTCCACTCAAAGCAAGAGGCAGAGCTGTTGGCTGCATATAAGCCACTAATCAATGTGACTTTCTTGCGAACTAATCTACATCGTGTAGAGGAATTGACACATGATGCCGTGAAGTTATTTAATAGTACTCATCATATGTTAT
TATACTACGAGAACTTGATAAAGGATCAAAGGAAAATGATGGAAGTTCAGGAATTTCTCAAAGTGCCTCCACGTAAATTAGAGAGCAGGCAAGTGAAAATTCACACACGGCCACTTTCAGAGCAGATTCAGAACAGGGATGAGGTACACAAAAAACTAAAGGGTACAGAGTATGAGGCCTTTTTGAAGGAGACAGATTAT
GATATGTGAATCTGTGATAAGGAGGTGGAATGATTGTTAAAACTGATTGTAATTAGCTTCTTGGTGTAAATAAATTATATTCATTCATTTTTTCTAGTCAAGGCTATATGAAATTGTTCCACTCATAACAGGCAAGCTGGGATGTCTGTTCCAGCTTATATTCTGGAGTTATTCTATGCCAATACTAGTCTACATGTGTG
ATCTTTCAATTTAAATTGTAAGGTGTTCCACTCGAGTATTCTTTGAGAATCAGTGGAAGAAATTTCATTCCATTCATTGTTCTCTAGAGAAACTTCTAGAGAAAGATAGGTCCTCCATTTTCAGAATAGGTGGCGTTGATTGCATGTTACAGTTTGCTTCTTTATTTTATACTGGCATATGGGGTTTGACAAAGTTTTCA
ATCTAAAGAAAGATTCAAAGAACGGCTAGACACTGGTACCTTGAGCAAATGACATATATTTTGGCTTATCTGGAAGGTCATGTTTCTGTGGCCAACGTGTGTTTTGTAACTGCTCTTATTTTCAAAGTTACATAGCTCAGACTCAACAAGCCAAATGTACTAGTTGGCTTGCCACTTAGCAAAAGCTCAGCAGACTAAAA
ATATATAAAATATGTAGAAAGAGAGAATTCCATTCCATGACAAACACATTCTTTAGACA
>TRINITY_DN41831_c0_g1_i1 from sample A7 / Example unspliced isoform:CCATGTCCACTCAAAGCAAGAGgtttgtagtaaaggatgaagaaatccaaatttgttttcttagcagattctacatgttttgggcacaacgaaggcactgtcttctttgaagctatatatatattcagaattttctttgacacagtagtgatctaaaagcttcaatttgtcatgttttgtagGCAGAGCTGTTGGCTGCA
TATAAGCCACTAATCAATGTGACTTTCTTGCGAACTAATCTACATCGTGTAGAGGAATTGACACATGATGCCGTGAAGTTATTTAATAGTACTCATCATATGTTATTATACTACGAGAACTTGATAAAGGATCAAAGGGTATTTTGACAGCATTGCTATTAATAGTTTATCTTTGAGTTAAATATCAGTTTATATTCTCT
CTATGTTTCCAGATAAATTGCATCTCAATTTTAATAAACCTCAAATGACAAGGATTCCTTTGTTTATTGTCGTTATGTAGCTGAAAGAGTGAAATGATAGAAATCTCACTTCATTCGTTGTTATGTATCAGAAAATGATGGAAGTTCAGGAATTTCTCAAAGTGCCTCCACGTAAATTAGAGAGCAGGCAAGTGAAAATT
CACACACGGCCACTTTCAGAGCAGATTCAGAACAGGGATGAGGTACACAAAAAACTAAAGGGTACAGAGTATGAGGCCTTTTTGAAGGAGACAGATTATGATATGTGAATCTGTGATAAGGAGGTGGAATGATTGTTAAAACTGATTGTAATTAGCTTCTTGGTGTAAATAAATTATATTCATTCATTTTTTCTAGTCAA
GGCTATATGAAATTGTTCCACTCATAACAGGCAAGCTGGGATGTCTGTTCCAGCTTATATTCTGGAGTTATTCTATGCCAATACTAGTCTACATGTGTGATCTTTCAATTTAAATTGTAAGGTGTTCCACTCGAGTATTCTTTGAGAATCAGTGGAAGAAATTTCATTCCATTCATTGTTCTCTAGAGAAACTTCTAGAG
AAAGATAGGTCCTCCATTTTCAGAATAGGTGGCGTTGATTGCATGTTACAGTTTGCTTCTTTATTTTATACTGGCATATGGGGTTTGACAAAGTTTTCAATCTAAAGAAAGATTCAAAGAACGGCTAGACACTGGTACCTTGAGCAAATGACATATATTTTGGCTTATCTGGAAGGTCATGTTTCTGTGGCCAACGTGTG
TTTTGTAACTGCTCTTATTTTCAAAGTTACATAGCTCAGACTCAACAAGCCAAATGTACTAGTTGGCTTGCCACTTAGCAAAAGCTCAGCAGACTAAAAATATATAAAATATGTAGAAAGAGAGAATTCCATTCCATGACAAACACATTCTTTAGACA