sp|Q5K5B6|RH57_ORYSJ ----> DEAD-box ATP-dependent RNA helicase 57
Intron 1 GTAAATAGAA ... AATTTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.18 | 2.5 | 0 | 29 |
| A2 | 78.97 | 3 | 1 | 21 |
| A3 | 93.55 | 1 | 5 | 24 |
| A4 | 88.89 | 1 | 2 | 12 |
| A5 | 100 | 0 | 0 | 11 |
| A6 | 61.75 | 13.5 | 22 | 16 |
| A7 | 61.51 | 10 | 15 | 10 |
| A8 | 67.09 | 9 | 14 | 14 |
| A9 | 76.19 | 6 | 23 | 13 |
| A10 | 72.58 | 5 | 16 | 5 |
>TRINITY_DN41124_c0_g1_i8 from sample A9 / Example spliced isoformGGGAAATCAAATCGCCAAGGCCAGATAGGCACGAGAGAGAAGCAAAATTGAATGTTGCCCTACAAAATCTGGTTGAAACTGGTGATTCGCCCCGTATTTTGGGTATGAAGGCCACGAAATATTGAATTCACCCCATTTTCTCAGTACTGTATCCTCCAAATGGCGAGTTCGCCCCATTTTATCAATAATGTAGCCTCCAA
ATGGCGAGTTCGCCTCGATTGGAGGATGATGCAGCTGGTTCGTGGACTTTATCAGCTAAATCGCCCTCGATTTGAGTTGGGAAATGGGCAGTGCCAGTCTCACCAAATAAGTGACCACGCCCTCACTTTCAGGTTGGGAAATGGGCAGTCTCCCCGAGTAGACATTCAGTTACCACGCCCTAGATTTGAGGTTGGGAAAT
CTCGCTGAATCGACCATCGATTTTCGTTGGTGCAAGTGGAGGTTTTTATAATGGTATCGGTTACTGGTTTCAACCCCCAATGTTTTTTGGGTGAAGGTTTTTTAACTCCAAGTCCAAATTGGTCCATATCTGAGTAAAACATAGTAGATTCGTGCAACTTGCAAGGAGTTTATCCCTATATAATGTGGCAAGAGTGAATT
TGAAGGTGAAGGTAGTTTCAGTTGCATTACCTGGCACTGCAGCTGCTCAAGCGAAAAATGTGTCAACAACCTAGGTCATCTTAGACAAGGAGGCAGGGCACATCAATCGTAAATTGAATCCATGGGTTGTTGGCAGTTCTGAACTGGC
>TRINITY_DN41124_c0_g1_i7 from sample A9 / Example unspliced isoform:GGGAAATCAAATCGCCAAGGCCAGATAGGCACGAGAGAGAAGCAAAATTGAATGTTGCCCTACAAAATCTGGTTGAAACTGGTGATTCGCCCCGTATTTTGGGTATGAAGGCCACGAAATATTGAATTCACCCCATTTTCTCAGTACTGTATCCTCCAAATGGCGAGTTCGCCCCATTTTATCAATAATGTAGCCTCCAA
ATGGCGAGTTCGCCTCGATTGGAGGATGATGCAGCTGGTTCGTGGACTTTATCAGCTAAATCGCCCTCGATTTGAGTTGGGAAATGGGCAGTGCCAGTCTCACCAAATAAGTGACCACGCCCTCACTTTCAGGTTGGGAAATGGGCAGTCTCCCCGAGTAGACATTCAGTTACCACGCCCTAGATTTGAGGTTGGGAAAT
CTCGCTGAATCGACCATCGATTTTCGTTGGTGCAAGTGGAGGTTTTTATAATGGTATCGGTTACTGGTTTCAACCCCCAATGTTTTTTGGGTGAAGGTTTTTTAACTCCAAGTCCAAATTGGTCCATATCTGAGTAAAACATAGTAGATTCGTGCAACTTGCAAGGAGTTTATCCCTATATAATGTGGCAAGAgtaaata
gaaacccacctcatcagatctttcatctttccatgaagcttggtttttttatagtggatgtctctgcttttgttcaaagttccttagggtttgcaatatttagagaggttagttttcatagaaccagatactgtgcagtggacattatgctatggatgcattcattgttgtattttctatagtctttaaactattgttga
agctttgaaatttaattttgaagGTGAATTTGAAGGTGAAGGTAGTTTTAGTTGCATTACTTGGCACTATAGCTGCTCAAGTGAAAAATGCATCAACAACCTAGGTCATCTTAGACAAGTATGTTTTCATCCTCTATACATACGAAGTTCCAACATTGTACATTGTGAATCACTGGAATGACAAATTAGTATTTAATTCG
GGGTTCTACAATATCCTCCCTGGGGTTTTACAATGTCTTCCCGAATCCCCATTGAAG
Intron 2 GTCAGTGGAG ... TGTTTCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.98 | 38 | 84 | 85 |
| A2 | 71.01 | 20 | 53 | 45 |
| A3 | 77.44 | 22 | 82 | 69 |
| A4 | 68.63 | 16 | 31 | 39 |
| A5 | 73.49 | 11 | 32 | 29 |
| A6 | 70.54 | 38 | 89 | 93 |
| A7 | 69.23 | 68 | 151 | 155 |
| A8 | 66.15 | 98 | 177 | 206 |
| A9 | 65.31 | 64 | 131 | 110 |
| A10 | 66.08 | 58 | 114 | 112 |
>TRINITY_DN47382_c1_g1_i17 from sample A10 / Example spliced isoformAACTTTTGCAAGCCTCATAAATTCGATCTCAAAATAAATATCAAACAGCTTTTGCCAGTGGAGTTTAGTGGAATTTATAGTTCAGTGATCAGTTCCCAGGCTCTGAACTGTTCATTCATTGGATCGTATATTACTGAAGCAGCAGGGGGTAGGACTGTGGGAGCCTAGGCTGCAGTGAAAACTCTGCCTCTAGGGATGTA
CAGCACTGTGCTTAATGTGCCCTTTTCTGACTCTCAGGAATGAATCAGTGAATGAATGCATGACCCTCTAGGCTCTGACTGAATGAATGCAAATTGCATTTTGGAATTGAAGTCCGCGGGCTTTGGATTTTTCTCCCCTGCACCACTCGTCCTTTGCACGATTTTTATGTGAAAACCCATGTCGTGTACTATCTCTGCAA
TAGCCCCAACGATATTCTATAAATATGTGCAACTTGGAGGAAGCCCTGACTCCCACAGCACTTTTGGGTCTTTCATGTACCTTCAAACGCTTTAGATTTTTATGAGATTTTTAATACACCCATTCAGCCCCCGCACACCCGGTCCGCTGCATCGTACCAATTATTTCTGTTCTTGATTTCAAGTTTTGCGGTACGGTGCA
GCATTTGAATTGAATTATGGGCGACTGGCCTTAATGTTCAACTTCTAACGCGCTCCCGTATTCAGAAGGAAGAAAGAAGACGCGCAGGCAGGCGGAGAATTGCCAGGATGCCTTGCAATCCGAACATAAATCTGAGCAGGCGAACATGGGAAGGTGGAGGCGGTGACTCGAATTCGATTTCGAATAATTCTAATTCAAAT
TCTTCTGTTCAGCGAAAAGCAGAGATTGGGAATAGAGCCTCGCCTTCCTTGTTTTCTGAGCAGCAAGAGGATCCACCTCCAAAGCATTCGATCCACACCACCACCACCAACGCCACCAAGTTCCCTCGCAGTAAAACTTCCACTCGTACAGAAAGGCTTCTCCTAGAGAGGCAACAAAGAAAAAACAGCAATAGCAGTAG
TACTAGTACGAATAGCATTAACAATAATAGTGCATTGGAGGACGATGGGGATAACGGAGCGAATGGGCACATGGAAAGAGGGGACAGATCGCCCAAAAGGGACGAGGAGGAAGGGTACTCTAATAGGCCCCCCGGGGCCACGAACTCTAGAGTACGCCAGGATGGGAGGCCCTCCAAGCAGAGGCTGCTGGTTGTAGCGA
ATAGATTGCCAGTGTCCGCTACCAGGAAGGGAGAGGACTCCTGGTCATTGGAGATAAGCGCCGGAGGCCTAGTCAGTGCCCTTCTCGGTCTGAAGCAGTTTGAAGCCAAGTGGATTGGATGGGCAGGTGTGAATGTACCAGACAAGCCCGGACAGGCTGCACTAACCAAGGCTCTTGCTGAAAAGCGCTGCATACCAGTC
TTTCTTGATGAGGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATGTTCTTTGGCCGCTCTTTCACTATCTTGGACTTCCTCAGGAGGATAGACTTGCTACCACACGGAGTTTCCAGTCGCAGTTCGATGCATATAAAAAGGCTAATGAGATGTTTGCAGAGGTTGTACATTCACATTACAAAGAAGGAGATGT
TGTGTGGTGTCATGACTATCATCTTATGTTTCTTCCACAGTGCTTGAAAGCTCGTGATAGTAATATGAAAGTTGGGTGGTTCTTGCACACTCCTTTCCCTTCTTCAGAAATCCACAGAACTCTGCCATCACGTTCAGAGCTGCTAAGGGCAGTTCTTGCTGCAGATTTAGTTGGTTTCCATACTTATGATTATGCAAGAC
ATTTTGTAAGCGCATGCACACGGATTCTTGGGTTGGAAGGAACCCCAGAAGGGGTTGAGGACCAAGGGAAGCTGACCCGTGTTGCTGCGTTCCCCATAGGTATTGACTCAGAGCGGTTCATTAAAGCACTAGAATTGCCTGAAGTAAAAAAGCATATCGAAGAGCTAAAAGAAAGATTTTCTGGTAGAAAGGTCATGTTA
GGTGTTGATCGGTTGGATATGATCAAAGGAATTCCACAGAAAATTCTAGCATTTGAGAAGTTCCTAGAAGAGAATGAGACATGGCGGGATAAAGTGGTATTGGTCCAGATAGCTGTACCAACAAGAACAGATGTTCCAGAATATCAAAAGCTCACAAGCCAAGTTCATGAGATTGTGGGGCGAATAAACGGGCGCTTTGG
AACTTTGATAACCGTTCCAATACATCATTTGGATCGATCTCTTGATTTTCATGCACTTTGTGCCCTATATGCAGTCACTGATGTGACTCTTATAACATCTTTACGGGATGGGATGAATCTTGTGAGTTATGAAGTTGTAGCCTGTCAAAATGAAAAGAAAGGGGTGCTAATTCTAAGTGAGTTTGCTGGGGCTGCTCAAT
CTTTGGGGGCTGGTGCACTACTCGTAAATCCTTGGAATATTACTGAAGTTGCTACTTCAATAGGCGATGCTTTAAATATGACGGCTGAAGAGCGAGAAGAAAGACACCGCCATAACTTCGAACACGTGACAACACACACTGCCCAGGTGTGGGCTGATACATTTGTTAGTGAATTGAAGGATACAATAGTTGAGGCACAA
TTACGGACTCGGCATATTCCTCCTCAGCTTCCTGTTGACAAGGCCGTTGAAAAGTACCAACAATCCAACAATCGATTGCTTATACTGGGGTTTAATGCAACAATGACTGAACAAGTTGATGTGCCTGGAAGAAGAGGAAATGACCAAATTAAAGAAATGAAGCTTGTTTTGCATCCTGAACTGAGGGAACCTCTTTCAAT
TCTCTGTAATGATCCAAAAACAACTATAGTTATTCTTAGTGGAAGTGAGAGGACCGTCTTAGATGAGAATTTCAAAGATTTCAACGTGTGGTTGGCAGCAGAGAATGGCATGTTTCTTCGTCTGACATTAGGAGAGTGGATGACTACAATGCCTGAACTTCTTAATATGGAGTGGGTTGAAAGTGTACAGCTTGTTTTGG
ACTATTTCCGAGAAAGGACACCACGTTCATATGTTGAGGCCCGAGAAACATCACTAGTATGGAACTACAAATATGCAGATGTTGAATTTGGAAGAGTCCAGGCACGGGATATGTTACAGCACTTATGGACTGGTCCTATTTCAAATGCTGCTGTTGATGTTGTCCAAGGCAGCAGGGCGCAGCAATTGACCGGATTTTGG
GAGAAATAGTTCACAGTAAACGCATGACAACACCAATAGATTATGTTCTCTGTATTGGCCACTTTTTAGGCAAGGATGAAGACATCTATACCTTCTTTGAGCCAGAACTTCCCCTTGATAGAGAAGTAATAGGAACAGGAAAATTGATGGAGAATAAGGCTTGTGTGGAGAAAAGAACAGGACCAAAGCCTAATGTTGGG
AAAAGTGGCAGTAAAGGGGTACGCAACAAAGTTTTTCCATTGTCACCGGAAAAAGGACCACATTCAAGAAGCAACAACAGTAAAGATTTGAGGATGCAAGATGAGATTGTTGGCTGGCACGAGGGGTCTTCCGTACTCGACTTGAAAGGGGAGAACTATTTTTCTTGTGCGGTAGGTCGAAATTGTTCGAATGCACGCTA
TTCTCTAGAGTCCTCTAAGGAAGTTGTCTCTTTTATTAAATCTATGGCAAGAAGTTATTCAGAAACCGGTACTAACAAAAAAGATGATTTGCGGTCACAAAGGAGAGAGTATTAAGAAGCCTACCAATAACACCATAACACCGATGCCCATGTTTGCATACAGGTTCTGCAAATGGACAATATGAGAGACTAAGCAACAT
TTACTGTGTTACATTGACTCTCAAGTTGCTGCCCTTTCTGTTGTTAATTTGAGAATGTAAATCTGTCTGCTTGGTTCTCATAACTGCAGATGCTACATTTTTTATTCGACCATATTAAGAAATCATGTACATTTTTTTATTTTACATCACTGGTTTACTAATGATATTTCTCATTGCCAGTAGAATGGCAATCTTCATTT
TATGTTCAATTCAAGTATTGTCATGCTGGAGTAATTTTAAAATAGTCATGCATATCCAGTGATAGTTAGAATCCTAGTTTCCCCTCCAGGGTCCACTTCGTAATATCTGTGAGTGTATATCAATTGAATTGCAAAATATGCTGAATTGGAATTTCTAAAATAGATTGTGTACACATCCTTATCAAAATTACTAAGAATCA
TGTTTAATAGAAACTTGACAAGATGCAATTTGAAGGCATTTACGACCTTAATTAAACTGCTTGCATTAAGTGGCAATAATTCTATTTAGTATGGATACTGTAGAGAAATCAATACACCGACAGGGTAATGTAAAAATAAGATAGGCTAGAAGGATCAATTTCAATGTACAGG
>TRINITY_DN47382_c1_g1_i1 from sample A10 / Example unspliced isoform:AACTTTTGCAAGCCTCATAAATTCGATCTCAAAATAAATATCAAACAGCTTTTGCCAGTGGAGTTTAGTGGAATTTATAGTTCAGTGATCAGTTCCCAGGCTCTGAACTGTTCATTCATTGGATCGTATATTACTGAAGCAGCAGGGGGTAGGACTGTGGGAGCCTAGGCTGCAGTGAAAACTCTGCCTCTAGGGATGTA
CAGCACTGTGCTTAATGTGCCCTTTTCTGACTCTCAGGAATGAATCAGTGAATGAATGCATGACCCTCTAGGCTCTGACTGAATGAATGCAAATTGCATTTTGGAATTGAAGTCCGCGGGCTTTGGATTTTTCTCCCCTGCACCACTCGTCCTTTGCACGATTTTTATGTGAAAACCCATGTCGTGTACTATCTCTGCAA
TAGCCCCAACGATATTCTATAAATATGTGCAACTTGGAGGAAGCCCTGACTCCCACAGCACTTTTGGGTCTTTCATGTACCTTCAAACGCTTTAGATTTTTATGAGATTTTTAATACACCCATTCAGCCCCCGCACACCCGGTCCGCTGCATCGTACCAATTATTTCTGTTCTTGATTTCAAGTTTTGCGGTACGGTGCA
GCATTTGAATTGAATTATGGGCGACTGGCCTTAATGTTCAACTTCTAACGCGCTCCCGTATTCAGAAGGAAGAAAGAAGACGCGCAGGCAGGCGGAGAATTGCCAGGATGCCTTGCAATCCGAACATAAATCTGAGCAGGCGAACATGGGAAGGTGGAGGCGGTGACTCGAATTCGATTTCGAATAATTCTAATTCAAAT
TCTTCTGTTCAGCGAAAAGCAGAGATTGGGAATAGAGCCTCGCCTTCCTTGTTTTCTGAGCAGCAAGAGGATCCACCTCCAAAGCATTCGATCCACACCACCACCACCAACGCCACCAAGTTCCCTCGCAGTAAAACTTCCACTCGTACAGAAAGGCTTCTCCTAGAGAGGCAACAAAGAAAAAACAGCAATAGCAGTAG
TACTAGTACGAATAGCATTAACAATAATAGTGCATTGGAGGACGATGGGGATAACGGAGCGAATGGGCACATGGAAAGAGGGGACAGATCGCCCAAAAGGGACGAGGAGGAAGGGTACTCTAATAGGCCCCCCGGGGCCACGAACTCTAGAGTACGCCAGGATGGGAGGCCCTCCAAGCAGAGGCTGCTGGTTGTAGCGA
ATAGATTGCCAGTGTCCGCTACCAGGAAGGGAGAGGACTCCTGGTCATTGGAGATAAGCGCCGGAGGCCTAGTCAGTGCCCTTCTCGGTCTGAAGCAGTTTGAAGCCAAGTGGATTGGATGGGCAGGTGTGAATGTACCAGACAAGCCCGGACAGGCTGCACTAACCAAGGCTCTTGCTGAAAAGCGCTGCATACCAGTC
TTTCTTGATGAGGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATGTTCTTTGGCCGCTCTTTCACTATCTTGGACTTCCTCAGGAGGATAGACTTGCTACCACACGGAGTTTCCAGTCGCAGTTCGATGCATATAAAAAGGCTAATGAGATGTTTGCAGAGGTTGTACATTCACATTACAAAGAAGGAGATGT
TGTGTGGTGTCATGACTATCATCTTATGTTTCTTCCACAGTGCTTGAAAGCTCGTGATAGTAATATGAAAGTTGGGTGGTTCTTGCACACTCCTTTCCCTTCTTCAGAAATCCACAGAACTCTGCCATCACGTTCAGAGCTGCTAAGGGCAGTTCTTGCTGCAGATTTAGTTGGTTTCCATACTTATGATTATGCAAGAC
ATTTTGTAAGCGCATGCACACGGATTCTTGGGTTGGAAGGAACCCCAGAAGGGGTTGAGGACCAAGGGAAGCTGACCCGTGTTGCTGCGTTCCCCATAGGTATTGACTCAGAGCGGTTCATTAAAGCACTAGAATTGCCTGAAGTAAAAAAGCATATCGAAGAGCTAAAAGAAAGATTTTCTGGTAGAAAGGTCATGTTA
GGTGTTGATCGGTTGGATATGATCAAAGGAATTCCACAGAAAATTCTAGCATTTGAGAAGTTCCTAGAAGAGAATGAGACATGGCGGGATAAAGTGGTATTGGTCCAGATAGCTGTACCAACAAGAACAGATGTTCCAGAATATCAAAAGCTCACAAGCCAAGTTCATGAGATTGTGGGGCGAATAAACGGGCGCTTTGG
AACTTTGATAACCGTTCCAATACATCATTTGGATCGATCTCTTGATTTTCATGCACTTTGTGCCCTATATGCAGTCACTGATGTGACTCTTATAACATCTTTACGGGATGGGATGAATCTTGTGAGTTATGAAGTTGTAGCCTGTCAAAATGAAAAGAAAGGGGTGCTAATTCTAAGTGAGTTTGCTGGGGCTGCTCAAT
CTTTGGGGGCTGGTGCACTACTCGTAAATCCTTGGAATATTACTGAAGTTGCTACTTCAATAGGCGATGCTTTAAATATGACGGCTGAAGAGCGAGAAGAAAGACACCGCCATAACTTCGAACACGTGACAACACACACTGCCCAGGTGTGGGCTGATACATTTGTTAGTGAATTGAAGGATACAATAGTTGAGGCACAA
TTACGGACTCGGCATATTCCTCCTCAGCTTCCTGTTGACAAGGCCGTTGAAAAGTACCAACAATCCAACAATCGATTGCTTATACTGGGGTTTAATGCAACAATGACTGAACAAGTTGATGTGCCTGGAAGAAGAGGAAATGACCAAATTAAAGAAATGAAGCTTGTTTTGCATCCTGAACTGAGGGAACCTCTTTCAAT
TCTCTGTAATGATCCAAAAACAACTATAGTTATTCTTAGTGGAAGTGAGAGGACCGTCTTAGATGAGAATTTCAAAGATTTCAACGTGTGGTTGGCAGCAGAGAATGGCATGTTTCTTCGTCTGACATTAGGAGAGTGGATGACTACAATGCCTGAACTTCTTAATATGGAGTGGGTTGAAAGTGTACAGCTTGTTTTGG
ACTATTTCCGAGAAAGGACACCACGTTCATATGTTGAGGCCCGAGAAACATCACTAGTATGGAACTACAAATATGCAGATGTTGAATTTGGAAGAGTCCAGGCACGGGATATGTTACAGCACTTATGGACTGGTCCTATTTCAAATGCTGCTGTTGATGTTGTCCAAGGCAGCAGgtcagtggagatccgatctgttggt
gtttcaaagGGCGCAGCAATTGACCGGATTTTGGGAGAAATAGTTCACAGTAAACGCATGACAACACCAATAGATTATGTTCTCTGTATTGGCCACTTTTTAGGCAAGGATGAAGACATCTATACCTTCTTTGAGCCAGAACTTCCCCTTGATAGAGAAGTAATAGGAACAGGAAAATTGATGGAGAATAAGGCTTGTGT
GGAGAAAAGAACAGGACCAAAGCCTAATGTTGGGAAAAGTGGCAGTAAAGGGGTACGCAACAAAGTTTTTCCATTGTCACCGGAAAAAGGACCACATTCAAGAAGCAACAACAGTAAAGATTTGAGGATGCAAGATGAGATTGTTGGCTGGCACGAGGGGTCTTCCGTACTCGACTTGAAAGGGGAGAACTATTTTTCTT
GTGCGGTAGGTCGAAATTGTTCGAATGCACGCTATTCTCTAGAGTCCTCTAAGGAAGTTGTCTCTTTTATTAAATCTATGGCAAGAAGTTATTCAGAAACCGGTACTAACAAAAAAGATGATTTGCGGTCACAAAGGAGAGAGTATTAAGAAGCCTACCAATAACACCATAACACCGATGCCCATGTTTGCATACAGGTT
CTGCAAATGGACAATATGAGAGACTAAGCAACATTTACTGTGTTACATTGACTCTCAAGTTGCTGCCCTTTCTGTTGTTAATTTGAGAATGTAAATCTGTCTGCTTGGTTCTCATAACTGCAGATGCTACATTTTTTATTCGACCATATTAAGAAATCATGTACATTTTTTTATTTTACATCACTGGTTTACTAATGATA
TTTCTCATTGCCAGTAGAATGGCAATCTTCATTTTATGTTCAATTCAAGTATTGTCATGCTGGAGTAATTTTAAAATAGTCATGCATATCCAGTGATAGTTAGAATCCTAGTTTCCCCTCCAGGGTCCACTTCGTAATATCTGTGAGTGTATATCAATTGAATTGCAAAATATGCTGAATTGGAATTTCTAAAATAGATT
GTGTACACATCCTTATCAAAATTACTAAGAATCATGTTTAATAGAAACTTGACAAGATGCAATTTGAAGGCATTTACGACCTTAATTAAACTGCTTGCATTAAGTGGCAATAATTCTATTTAGTATGGATACTGTAGAGAAATCAATACACCGACAGGGTAATGTAAAAATAAGATAGGCTAGAAGGATCAATTTCAATG
TACAGG
Intron 3 GTTAAAGTGG ... AAGTGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 89.19 | 6 | 46 | 53 |
| A2 | 75 | 10 | 42 | 18 |
| A3 | 90.16 | 6 | 75 | 35 |
| A4 | 89.8 | 5 | 42 | 46 |
| A5 | 70.91 | 16 | 39 | 39 |
| A6 | 80.17 | 36 | 104 | 187 |
| A7 | 85.92 | 25 | 170 | 135 |
| A8 | 76.19 | 30 | 102 | 90 |
| A9 | 78.62 | 31 | 105 | 123 |
| A10 | 89.94 | 9 | 61 | 100 |
>TRINITY_DN46107_c1_g2_i5 from sample A8 / Example spliced isoformTAGAGTGAGTCTTCCCTGACCGGTACTGTTGAATTTTCAATCACTGACGAACAGGGTTGAGTATCTCATTCTAGATGAGTCGAATAAGCTATTTGAACTTGGATTTATTGAGCAAATTGATTCAGTAGAAAATGTTTGCTCGAGTCCCTCATTTGTACGTTCATTATTTAGTGCTACGTTGCATGATTCCATTGAGGAGA
TTTCTCGCACCATCATGCATGATGCAGTACGAATAATTGTTGGTAGAAAATTTCCAAGTATCTGCACTATTTTAACCAGGGGGTATATCTTATTCTGTAAAAAGCATCATAGTTGATACAACAGAAATTTTGTTGGAAATGAGGAAGGAAAGCTGCTTGCTCTTCGTCAGATTTTTGGGGAGGTGAATTTGAAAGTGAAG
GTAGTTTCGGTTGCATTACCTATCACTGCAACTGCTCAAGCGAAAAATCCGTCAACAACCTGGGTCATCTTAGACAATGAGGAGGTGGTTAAAAGTTCTCTCTGCTTGGAGGATGGAGGGTTTAACCTATCGGTTGTTCCAACGCGTCCAACTCTTGGATAAGATGAACCAGGAGTGGGGTGTGGCTCATGGAGCTTGCT
CATCTAGAGTAGAACCTCTGGTAAGCTTATGGCCTCTATGGCTCACAATCCCTCTCGTGAGGATGATATTTATTTTGAAAAAGAAGGGCTACGCTTCCTAGGTTCTTATGGTCGGACTGTTGTGGATTATAATGACCATTATGTACACCCAATGTTTATTTCCTAAAGTCACAGTAGTACTTTGTTTATTTATAACATGG
TAATTCCTTTGTATTGACCTTGCGTCGATTTTCCCTTTGTGGCATTGAATTTCTATATTATGTATAAGTTAAACAATGGTAAAGCGTACCCCCAAAAGTTAAAAATATCTCTTCTATGTTTGTGAATTATTCAGGGCAAGGCACGTGAAATTCATATTCTTTTGTTTATAAACTATTTTTCCTATAGGGTGGTAGGGTTT
ATCTGACATAGTTGAATTACGGTATTAAAAATTGGCCTAGTAATTTCTTGTACATTTTTCCAACTATGAGTTTTTATAGTGCGTAGGGTTTGCTCTCAATATATC
>TRINITY_DN46107_c1_g2_i13 from sample A8 / Example unspliced isoform:TAGAGTGAGTCTTCCCTGACCGGTACTGTTGAATTTTCAATCACTGACGAACAGGGTTGAGTATCTCATTCTAGATGAGTCGAATAAGCTATTTGAACTTGGATTTATTGAGCAAATTGATTCAGTAGAAAATGTTTGCTCGAGTCCCTCATTTGTACGTTCATTATTTAGTGCTACGTTGCATGATTCCATTGAGGAGA
TTTCTCGCACCATCATGCATGATGCAGTACGAATAATTGTTGGTAGAAAATTTCCAAGTATCTGCACTATTTTAACCAGGGGGTATATCTTATTCTGTAAAAAGCATCATAGTTGATACAACAGAAATTTTGTTGGAAATGAGGAAGGAAAGCTGCTTGCTCTTCGTCAGATTTTTGGGGAGGTGAATTTGAAAGTGAAG
GTAGTTTCGGTTGCATTACCTATCACTGCAACTGCTCAAGCGAAAAATCCGTCAACAACCTGGGTCATCTTAGACAAgttaaagtggaagtaaaggtgttggttcataacttcattgtagtgtagagaaaggcctggttgacgaagttattgctttggtggtttcctttctcatcctcggagcttcaacccatcaagtga
gaagTGAGGAGGTGGTTAAAAGTTCTCTCTGCTTGGAGGATGGAGGGTTTAACCTATCGGTTGTTCCAACGCGTCCAACTCTTGGATAAGATGAACCAGGAGTGGGGTGTGGCTCATGGAGCTTGCTCATCTAGAGTAGAACCTCTGGTAAGCTTATGGCCTCTATGGCTCACAATCCCTCTCGTGAGGATGATATTTAT
TTTGAAAAAGAAGGGCTACGCTTCCTAGGTTCTTATGGTCGGACTGTTGTGGATTATAATGACCATTATGTACACCCAATGTTTATTTCCTAAAGTCACAGTAGTACTTTGTTTATTTATAACATGGTAATTCCTTTGTATTGACCTTGCGTCGATTTTCCCTTTGTGGCATTGAATTTCTATATTATGTATAAGTTAAA
CAATGGTAAAGCGTACCCCCAAAAGTTAAAAATATCTCTTCTATGTTTGTGAATTATTCAGGGCAAGGCACGTGAAATTCATATTCTTTTGTTTATAAACTATTTTTCCTATAGGGTGGTAGGGTTTATCTGACATAGTTGAATTACGGTATTAAAAATTGGCCTAGTAATTTCTTGTACATTTTTCCAACTATGAGTTT
TTATAGTGCGTAGGGTTTGCTCTCAATATATC
Intron 4 GTGAGTTACA ... TATTACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.33 | 52.6 | 24.5 | 28.9 |
| A2 | 36.25 | 32 | 19.1 | 27.4 |
| A3 | 22.73 | 29.1 | 9.3 | 26.4 |
| A4 | 41.41 | 14.7 | 10.8 | 12.9 |
| A5 | 39.76 | 11.9 | 7.9 | 7.8 |
| A6 | 25.34 | 39.3 | 15.8 | 7.9 |
| A7 | 22.54 | 39.6 | 13.9 | 12.5 |
| A8 | 15.83 | 57.9 | 18.8 | 21.1 |
| A9 | 28.55 | 46.3 | 22 | 14.1 |
| A10 | 21.23 | 32.2 | 13.1 | 5.3 |
>TRINITY_DN132542_c1_g1_i8 from sample A1 / Example spliced isoformTCAGTTGTACGTTCATTATTTAGTGCTACGTTGCATGATTCCATTGAGGAGATTTCTCGCACCATCATGCATGATGCAGTACGAATAATTGTTGGTAGAAAATTTCCAAGTATCTGCACTATTTTAACCAGGGGGTATATCTTATTCTGTAAAAAGCATCATAGTTGATACAACAGAAATTTTGTTGGAAATGAGGAAGG
AAAGCTGCTTGCTCTTCGTCAGATTTTTGGGGAGGTGAATTTGAAAGTGAAGGTAGTTTCGGTTGCATTACCTATCACTGCAACTGCTCAAGCGAAAAATCCGTCAACAACCTGG
>TRINITY_DN132542_c1_g1_i1 from sample A1 / Example unspliced isoform:TCAGTTGTACGTTCATTATTTAGTGCTACGTTGCATGATTCCATTGAGGAGATTTCTCGCACCATCATGCATGATGCAGTACGAATAATTGTTGGTAGAAAgtgagttacataaaattcattttttcctacgctataccttgcatttctatattttgatatttactaggattcttcatgtcatgataggatcaacttttg
aatgcatttaatattctatgtattacacagATTTCCAAGTATCTGCACTATTTTAACCAGGGGGTATATCTTATTCTGTAAAAAGCATCATAGTTGATACAACAGAAATTTTGTTGGAAATGAGGAAGGAAAGCTGCTTGCTCTTCGTCAGATTTTTGGGGAGGTTAAAGTGGAAGTAAAGGTGTTGGTTCATAACTTCA
TTGTAGTGTAGAGAAAGGCCTGGTTGACGAAGTTATTGCTTTGGTGGTTTCCTTTCTCATCCTCGGAGCTTCAACCCATCAAGTGAGAAGGTATGTTGATGTGGTTGTTTCTCTGTTCTTTGTAAGAGTTTATGTGAGAAATTTTCCAGATTGGTGTGTGTGACTTACCATGTCCATTTCAAATAGATTCCTAGGGTTGA
GAGTCAAGACCCTGCAACATGTCGATAAGACTAGGATTCTTGTACTTAAACATTGTTTGTGGTCAGTTTATTGAATCATAATTTAGTTGATTGTTCTTTTATTCTTTCCAGTAAATGAAA
Intron 5 GTAGGTCGAA ... TTGCATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.8 | 49 | 67 | 85 |
| A2 | 59.78 | 36 | 59 | 48 |
| A3 | 66.81 | 38 | 66 | 87 |
| A4 | 59.63 | 22 | 31 | 34 |
| A5 | 52 | 18 | 24 | 15 |
| A6 | 66.29 | 151 | 280 | 314 |
| A7 | 64.85 | 181 | 348 | 320 |
| A8 | 64.58 | 263 | 458 | 501 |
| A9 | 63.34 | 189 | 308 | 345 |
| A10 | 66.22 | 101 | 206 | 190 |
>TRINITY_DN47382_c1_g1_i28 from sample A10 / Example spliced isoformAACTTTTGCAAGCCTCATAAATTCGATCTCAAAATAAATATCAAACAGCTTTTGCCAGTGGAGTTTAGTGGAATTTATAGTTCAGTGATCAGTTCCCAGGCTCTGAACTGTTCATTCATTGGATCGTATATTACTGAAGCAGCAGGGGGTAGGACTGTGGGAGCCTAGGCTGCAGTGAAAACTCTGCCTCTAGGGATGTA
CAGCACTGTGCTTAATGTGCCCTTTTCTGACTCTCAGGAATGAATCAGTGAATGAATGCATGACCCTCTAGGCTCTGACTGAATGAATGCAAATTGCATTTTGGAATTGAAGTCCGCGGGCTTTGGATTTTTCTCCCCTGCACCACTCGTCCTTTGCACGATTTTTATGTGAAAACCCATGTCGTGTACTATCTCTGCAA
TAGCCCCAACGATATTCTATAAATATGTGCAACTTGGAGGAAGCCCTGACTCCCACAGCACTTTTGGGTCTTTCATGTACCTTCAAACGCTTTAGATTTTTATGAGATTTTTAATACACCCATTCAGCCCCCGCACACCCGGTCCGCTGCATCGTACCAATTATTTCTGTTCTTGATTTCAAGTTTTGCGGTACGGTGCA
GCATTTGAATTGAATTATGGGCGACTGGCCTTAATGTTCAACTTCTAACGCGCTCCCGTATTCAGAAGGAAGAAAGAAGACGCGCAGGCAGGCGGAGAATTGCCAGGATGCCTTGCAATCCGAACATAAATCTGAGCAGGCGAACATGGGAAGGTGGAGGCGGTGACTCGAATTCGATTTCGAATAATTCTAATTCAAAT
TCTTCTGTTCAGCGAAAAGCAGAGATTGGGAATAGAGCCTCGCCTTCCTTGTTTTCTGAGCAGCAAGAGGATCCACCTCCAAAGCATTCGATCCACACCACCACCACCAACGCCACCAAGTTCCCTCGCAGTAAAACTTCCACTCGTACAGAAAGGCTTCTCCTAGAGAGGCAACAAAGAAAAAACAGCAATAGCAGTAG
TACTAGTACGAATAGCATTAACAATAATAGTGCATTGGAGGACGATGGGGATAACGGAGCGAATGGGCACATGGAAAGAGGGGACAGATCGCCCAAAAGGGACGAGGAGGAAGGGTACTCTAATAGGCCCCCCGGGGCCACGAACTCTAGAGTACGCCAGGATGGGAGGCCCTCCAAGCAGAGGCTGCTGGTTGTAGCGA
ATAGATTGCCAGTGTCCGCTACCAGGAAGGGAGAGGACTCCTGGTCATTGGAGATAAGCGCCGGAGGCCTAGTCAGTGCCCTTCTCGGTCTGAAGCAGTTTGAAGCCAAGTGGATTGGATGGGCAGGTGTGAATGTACCAGACAAGCCCGGACAGGCTGCACTAACCAAGGCTCTTGCTGAAAAGCGCTGCATACCAGTC
TTTCTTGATGAGGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATGTTCTTTGGCCGCTCTTTCACTATCTTGGACTTCCTCAGGAGGATAGACTTGCTACCACACGGAGTTTCCAGTCGCAGTTCGATGCATATAAAAAGGCTAATGAGATGTTTGCAGAGGTTGTACATTCACATTACAAAGAAGGAGATGT
TGTGTGGTGTCATGACTATCATCTTATGTTTCTTCCACAGTGCTTGAAAGCTCGTGATAGTAATATGAAAGTTGGGTGGTTCTTGCACACTCCTTTCCCTTCTTCAGAAATCCACAGAACTCTGCCATCACGTTCAGAGCTGCTAAGGGCAGTTCTTGCTGCAGATTTAGTTGGTTTCCATACTTATGATTATGCAAGAC
ATTTTGTAAGCGCATGCACACGGATTCTTGGGTTGGAAGGAACCCCAGAAGGGGTTGAGGACCAAGGGAAGCTGACCCGTGTTGCTGCGTTCCCCATAGGTATTGACTCAGAGCGGTTCATTAAAGCACTAGAATTGCCTGAAGTAAAAAAGCATATCGAAGAGCTAAAAGAAAGATTTTCTGGTAGAAAGGTCATGTTA
GGTGTTGATCGGTTGGATATGATCAAAGGAATTCCACAGAAAATTCTAGCATTTGAGAAGTTCCTAGAAGAGAATGAGACATGGCGGGATAAAGTGGTATTGGTCCAGATAGCTGTACCAACAAGAACAGATGTTCCAGAATATCAAAAGCTCACAAGCCAAGTTCATGAGATTGTGGGGCGAATAAACGGGCGCTTTGG
AACTTTGATAACCGTTCCAATACATCATTTGGATCGATCTCTTGATTTTCATGCACTTTGTGCCCTATATGCAGTCACTGATGTGACTCTTATAACATCTTTACGGGATGGGATGAATCTTGTGAGTTATGAAGTTGTAGCCTGTCAAAATGAAAAGAAAGGGGTGCTAATTCTAAGTGAGTTTGCTGGGGCTGCTCAAT
CTTTGGGGGCTGGTGCACTACTCGTAAATCCTTGGAATATTACTGAAGTTGCTACTTCAATAGGCGATGCTTTAAATATGACGGCTGAAGAGCGAGAAGAAAGACACCGCCATAACTTCGAACACGTGACAACACACACTGCCCAGGTGTGGGCTGATACATTTGTTAGTGAATTGAAGGATACAATAGTTGAGGCACAA
TTACGGACTCGGCATATTCCTCCTCAGCTTCCTGTTGACAAGGCCGTTGAAAAGTACCAACAATCCAACAATCGATTGCTTATACTGGGGTTTAATGCAACAATGACTGAACAAGTTGATGTGCCTGGAAGAAGAGGAAATGACCAAATTAAAGAAATGAAGCTTGTTTTGCATCCTGAACTGAGGGAACCTCTTTCAAT
TCTCTGTAATGATCCAAAAACAACTATAGTTATTCTTAGTGGAAGTGAGAGGACCGTCTTAGATGAGAATTTCAAAGATTTCAACGTGTGGTTGGCAGCAGAGAATGGCATGTTTCTTCGTCTGACATTAGGAGAGTGGATGACTACAATGCCTGAACTTCTTAATATGGAGTGGGTTGAAAGTGTACAGCTTGTTTTGG
ACTATTTCCGAGAAAGGACACCACGTTCATATGTTGAGGCCCGAGAAACATCACTAGTATGGAACTACAAATATGCAGATGTTGAATTTGGAAGAGTCCAGGCACGGGATATGTTACAGCACTTATGGACTGGTCCTATTTCAAATGCTGCTGTTGATGTTGTCCAAGGCAGCAGGTCAGTGGAGATCCGATCTGTTGGT
GTTTCAAAGGGCGCAGCAATTGACCGGATTTTGGGAGAAATAGTTCACAGTAAACGCATGACAACACCAATAGATTATGTTCTCTGTATTGGCCACTTTTTAGGCAAGGATGAAGACATCTATACCTTCTTTGAGCCAGAACTTCCCCTTGATAGAGAAGTAATAGGAACAGGAAAATTGATGGAGAATAAGGCTTGTGT
GGAGAAAAGAACAGGACCAAAGCCTAATGTTGGGAAAAGTGGCAGTAAAGGGGTACGCAACAAAGTTTTTCCATTGTCACCGGAAAAAGGACCACATTCAAGAAGCAACAACAGTAAAGATTTGAGGATGCAAGATGAGATTGTTGGCTGGCACGAGGGGTCTTCCGTACTCGACTTGAAAGGGGAGAACTATTTTTCTT
GTGCGGTTCTGCAAATGGACAATATGAGAGACTAAGCAACATTTACTGTGTTACATTGACTCTCAAGTTGCTGCCCTTTCTGTTGTTAATTTGAGAATGTAAATCTGTCTGCTTGGTTCTCATAACTGCAGATGCTACATTTTTTATTCGACCATATTAAGAAATCATGTACATTTTTTTATTTTACATCACTGGTTTAC
TAATGATATTTCTCATTGCCAGTAGAATGGCAATCTTCATTTTATGTTCAATTCAAGTATTGTCATGCTGGAGTAATTTTAAAATAGTCATGCATATCCAGTGATAGTTAGAATCCTAGTTTCCCCTCCAGGGTCCACTTCGTAATATCTGTGAGTGTATATCAATTGAATTGCAAAATATGCTGAATTGGAATTTCTAA
AATAGATTGTGTACACATCCTTATCAAAATTACTAAGAATCATGTTTAATAGAAACTTGACAAGATGCAATTTGAAGGCATTTACGACCTTAATTAAACTGCTTGCATTAAGTGGCAATAATTCTATTTAGTATGGATACTGTAGAGAAATCAATACACCGACAGGGTAATGTAAAAATAAGATAGGCTAGAAGGATCAA
TTTCAATGTACAGG
>TRINITY_DN47382_c1_g1_i17 from sample A10 / Example unspliced isoform:AACTTTTGCAAGCCTCATAAATTCGATCTCAAAATAAATATCAAACAGCTTTTGCCAGTGGAGTTTAGTGGAATTTATAGTTCAGTGATCAGTTCCCAGGCTCTGAACTGTTCATTCATTGGATCGTATATTACTGAAGCAGCAGGGGGTAGGACTGTGGGAGCCTAGGCTGCAGTGAAAACTCTGCCTCTAGGGATGTA
CAGCACTGTGCTTAATGTGCCCTTTTCTGACTCTCAGGAATGAATCAGTGAATGAATGCATGACCCTCTAGGCTCTGACTGAATGAATGCAAATTGCATTTTGGAATTGAAGTCCGCGGGCTTTGGATTTTTCTCCCCTGCACCACTCGTCCTTTGCACGATTTTTATGTGAAAACCCATGTCGTGTACTATCTCTGCAA
TAGCCCCAACGATATTCTATAAATATGTGCAACTTGGAGGAAGCCCTGACTCCCACAGCACTTTTGGGTCTTTCATGTACCTTCAAACGCTTTAGATTTTTATGAGATTTTTAATACACCCATTCAGCCCCCGCACACCCGGTCCGCTGCATCGTACCAATTATTTCTGTTCTTGATTTCAAGTTTTGCGGTACGGTGCA
GCATTTGAATTGAATTATGGGCGACTGGCCTTAATGTTCAACTTCTAACGCGCTCCCGTATTCAGAAGGAAGAAAGAAGACGCGCAGGCAGGCGGAGAATTGCCAGGATGCCTTGCAATCCGAACATAAATCTGAGCAGGCGAACATGGGAAGGTGGAGGCGGTGACTCGAATTCGATTTCGAATAATTCTAATTCAAAT
TCTTCTGTTCAGCGAAAAGCAGAGATTGGGAATAGAGCCTCGCCTTCCTTGTTTTCTGAGCAGCAAGAGGATCCACCTCCAAAGCATTCGATCCACACCACCACCACCAACGCCACCAAGTTCCCTCGCAGTAAAACTTCCACTCGTACAGAAAGGCTTCTCCTAGAGAGGCAACAAAGAAAAAACAGCAATAGCAGTAG
TACTAGTACGAATAGCATTAACAATAATAGTGCATTGGAGGACGATGGGGATAACGGAGCGAATGGGCACATGGAAAGAGGGGACAGATCGCCCAAAAGGGACGAGGAGGAAGGGTACTCTAATAGGCCCCCCGGGGCCACGAACTCTAGAGTACGCCAGGATGGGAGGCCCTCCAAGCAGAGGCTGCTGGTTGTAGCGA
ATAGATTGCCAGTGTCCGCTACCAGGAAGGGAGAGGACTCCTGGTCATTGGAGATAAGCGCCGGAGGCCTAGTCAGTGCCCTTCTCGGTCTGAAGCAGTTTGAAGCCAAGTGGATTGGATGGGCAGGTGTGAATGTACCAGACAAGCCCGGACAGGCTGCACTAACCAAGGCTCTTGCTGAAAAGCGCTGCATACCAGTC
TTTCTTGATGAGGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATGTTCTTTGGCCGCTCTTTCACTATCTTGGACTTCCTCAGGAGGATAGACTTGCTACCACACGGAGTTTCCAGTCGCAGTTCGATGCATATAAAAAGGCTAATGAGATGTTTGCAGAGGTTGTACATTCACATTACAAAGAAGGAGATGT
TGTGTGGTGTCATGACTATCATCTTATGTTTCTTCCACAGTGCTTGAAAGCTCGTGATAGTAATATGAAAGTTGGGTGGTTCTTGCACACTCCTTTCCCTTCTTCAGAAATCCACAGAACTCTGCCATCACGTTCAGAGCTGCTAAGGGCAGTTCTTGCTGCAGATTTAGTTGGTTTCCATACTTATGATTATGCAAGAC
ATTTTGTAAGCGCATGCACACGGATTCTTGGGTTGGAAGGAACCCCAGAAGGGGTTGAGGACCAAGGGAAGCTGACCCGTGTTGCTGCGTTCCCCATAGGTATTGACTCAGAGCGGTTCATTAAAGCACTAGAATTGCCTGAAGTAAAAAAGCATATCGAAGAGCTAAAAGAAAGATTTTCTGGTAGAAAGGTCATGTTA
GGTGTTGATCGGTTGGATATGATCAAAGGAATTCCACAGAAAATTCTAGCATTTGAGAAGTTCCTAGAAGAGAATGAGACATGGCGGGATAAAGTGGTATTGGTCCAGATAGCTGTACCAACAAGAACAGATGTTCCAGAATATCAAAAGCTCACAAGCCAAGTTCATGAGATTGTGGGGCGAATAAACGGGCGCTTTGG
AACTTTGATAACCGTTCCAATACATCATTTGGATCGATCTCTTGATTTTCATGCACTTTGTGCCCTATATGCAGTCACTGATGTGACTCTTATAACATCTTTACGGGATGGGATGAATCTTGTGAGTTATGAAGTTGTAGCCTGTCAAAATGAAAAGAAAGGGGTGCTAATTCTAAGTGAGTTTGCTGGGGCTGCTCAAT
CTTTGGGGGCTGGTGCACTACTCGTAAATCCTTGGAATATTACTGAAGTTGCTACTTCAATAGGCGATGCTTTAAATATGACGGCTGAAGAGCGAGAAGAAAGACACCGCCATAACTTCGAACACGTGACAACACACACTGCCCAGGTGTGGGCTGATACATTTGTTAGTGAATTGAAGGATACAATAGTTGAGGCACAA
TTACGGACTCGGCATATTCCTCCTCAGCTTCCTGTTGACAAGGCCGTTGAAAAGTACCAACAATCCAACAATCGATTGCTTATACTGGGGTTTAATGCAACAATGACTGAACAAGTTGATGTGCCTGGAAGAAGAGGAAATGACCAAATTAAAGAAATGAAGCTTGTTTTGCATCCTGAACTGAGGGAACCTCTTTCAAT
TCTCTGTAATGATCCAAAAACAACTATAGTTATTCTTAGTGGAAGTGAGAGGACCGTCTTAGATGAGAATTTCAAAGATTTCAACGTGTGGTTGGCAGCAGAGAATGGCATGTTTCTTCGTCTGACATTAGGAGAGTGGATGACTACAATGCCTGAACTTCTTAATATGGAGTGGGTTGAAAGTGTACAGCTTGTTTTGG
ACTATTTCCGAGAAAGGACACCACGTTCATATGTTGAGGCCCGAGAAACATCACTAGTATGGAACTACAAATATGCAGATGTTGAATTTGGAAGAGTCCAGGCACGGGATATGTTACAGCACTTATGGACTGGTCCTATTTCAAATGCTGCTGTTGATGTTGTCCAAGGCAGCAGGGCGCAGCAATTGACCGGATTTTGG
GAGAAATAGTTCACAGTAAACGCATGACAACACCAATAGATTATGTTCTCTGTATTGGCCACTTTTTAGGCAAGGATGAAGACATCTATACCTTCTTTGAGCCAGAACTTCCCCTTGATAGAGAAGTAATAGGAACAGGAAAATTGATGGAGAATAAGGCTTGTGTGGAGAAAAGAACAGGACCAAAGCCTAATGTTGGG
AAAAGTGGCAGTAAAGGGGTACGCAACAAAGTTTTTCCATTGTCACCGGAAAAAGGACCACATTCAAGAAGCAACAACAGTAAAGATTTGAGGATGCAAGATGAGATTGTTGGCTGGCACGAGGGGTCTTCCGTACTCGACTTGAAAGGGGAGAACTATTTTTCTTGTGCGgtaggtcgaaattgttcgaatgcacgcta
ttctctagagtcctctaaggaagttgtctcttttattaaatctatggcaagaagttattcagaaaccggtactaacaaaaaagatgatttgcggtcacaaaggagagagtattaagaagcctaccaataacaccataacaccgatgcccatgtttgcatacagGTTCTGCAAATGGACAATATGAGAGACTAAGCAACAT
TTACTGTGTTACATTGACTCTCAAGTTGCTGCCCTTTCTGTTGTTAATTTGAGAATGTAAATCTGTCTGCTTGGTTCTCATAACTGCAGATGCTACATTTTTTATTCGACCATATTAAGAAATCATGTACATTTTTTTATTTTACATCACTGGTTTACTAATGATATTTCTCATTGCCAGTAGAATGGCAATCTTCATTT
TATGTTCAATTCAAGTATTGTCATGCTGGAGTAATTTTAAAATAGTCATGCATATCCAGTGATAGTTAGAATCCTAGTTTCCCCTCCAGGGTCCACTTCGTAATATCTGTGAGTGTATATCAATTGAATTGCAAAATATGCTGAATTGGAATTTCTAAAATAGATTGTGTACACATCCTTATCAAAATTACTAAGAATCA
TGTTTAATAGAAACTTGACAAGATGCAATTTGAAGGCATTTACGACCTTAATTAAACTGCTTGCATTAAGTGGCAATAATTCTATTTAGTATGGATACTGTAGAGAAATCAATACACCGACAGGGTAATGTAAAAATAAGATAGGCTAGAAGGATCAATTTCAATGTACAGG
Intron 6 GTGAGTTCGC ... CTTTAGAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 19 | 4.5 |
| A2 | 100 | 0 | 28 | 6 |
| A3 | 100 | 0 | 21 | 5 |
| A4 | 100 | 0 | 35 | 10 |
| A5 | 100 | 0 | 14 | 12 |
| A6 | 90.57 | 5 | 48 | 16 |
| A7 | 94.59 | 2 | 35 | 9.5 |
| A8 | 100 | 0 | 38 | 13.5 |
| A9 | 92.31 | 5 | 60 | 8 |
| A10 | 94.64 | 3 | 53 | 5 |
>TRINITY_DN41124_c0_g1_i13 from sample A9 / Example spliced isoformTCCTACCAAATCTGGTTGAAACTGGTGATTCATCCCGTAGTTTGGGTATGAAGGCCACGAAATATTGAATTCGCCCCATTTTTCCAGTAATGTAGCTTGCAAATGGTGAATTTGAAGGTGAAGGTAGTTTCAGTTGCATTACCTGGCACTGCAGCTGCTCAAGCGAAAAATCTGTCAACAACTTGGGTCATCTTAGACAA
ATCAAATATATTCAAGACACTGATGGATGCTCCTACAACTTTCGAATATAACCATACACTATTGGTCTTGTGTATTGATCTCAAGAACAATCATATATTATTTTTGGTTATATGAAAGGTCGGAAATAGCGAACCTCTATCTATAGCAGTTTTCTGGACAGAATGAATTAGGGACTTATGCTTGTCTAATACTTGTATAT
TTAGGGTCTGTAACTAATTCATTGGTTGTTCCATCAAATCTATTCAAGACACGGATAGCTGCC
>TRINITY_DN41124_c0_g1_i25 from sample A9 / Example unspliced isoform:GGGAAATCAAATCGCCAAGGCCAGATAGGCACGAGAGAGAAGCAAAATTGAATTCGTCCTACCAAATCTGGTTGAAACTGGTGATTCATCCCGTAGTTTGGGTATGAAGGCCACGAAATATTGAATTCGCCCCATTTTTCCAGTAATGTAGCTTGCAAATGgtgagttcgccccgttttatcagttatgtagcctccaaa
tggcaagttcgccccattttatcagttatgtagcttccaaatggcgattttgccccgattggaggatgatgcagctggttcgtggactctgtcagctaaatcgcccttgatttgagttgggaaatgggcagttcaaacttcagtttatccctatataatgtggcaagagtcaatagaaacccacatcatcagatctttcg
tctttgcatgaagcttggttttttttatagtggatgtctctgggtttgttcaaatttccttggggttttcattctttagagagGTGAATTTGAAGGTGAAGGTAGTTTCAGTTGCATTACCTGGCACTGCAGCTGCTCAAGCGAAAAATCTGTCAACAACTTGGGTCATCTTAGACAAGTACGTTTCCATCCTCTATACA
TATGAAGTTCCGACATTGTAAACTGTGAATCACTGGAATGACAAATTCTAGTATTTAATTTGGGGTTTTACAATGTCTTCCCGAATCCCCATTGAAGTTTTAGGATTGTTATGAAGTGAGCTTCATGGTGTTGTCCTATTTCTATGATTTGTCCTCCTATAGATAGCTAAAGAAAGAAGAAAATATTGCATGGAATGACT
GCGTTACAATCTCATGGTTATAAAGAGTTTTTGGCCACAAAATTCTTTGTATAAACCTTATAGGATCCCTCAAAATAGAGGGTATGTAGACTACCCAAG
Intron 7 GTGTTTAAGA ... CTTGATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70 | 6 | 16 | 12 |
| A2 | 0 | 1 | 0 | 0 |
| A3 | 77.78 | 2 | 9 | 5 |
| A4 | 86.67 | 1 | 7 | 6 |
| A5 | 100 | 0 | 6 | 6 |
| A6 | 60 | 2 | 2 | 4 |
| A7 | 73.91 | 3 | 8 | 9 |
| A8 | 81.82 | 1 | 5 | 4 |
| A9 | 73.33 | 4 | 11 | 11 |
| A10 | 80.95 | 2 | 9 | 8 |
>TRINITY_DN48553_c1_g2_i7 from sample A7 / Example spliced isoformATGTTAATGATCAGGATTAGTGATTGCTTTCTACAGAAGCCTTGTACTTTCATCCTATGGTTGGACTTGCTTTGGAAACATGCTGCAGATCTCCTTGGTTACTCATTACCTGAAAGAAAAATCCACGAGATCGCTTTGGTGGGATCTCCGTTTTGGACCTCTTTAAATCATTGCAACAAAGACTCTATGATCTGCAAAAT
TCATTTGCAGAATCGTGCTGTCTATTTGCTGTTTAAATGTTCTTTAATTCTAATAAAAAATGATTTGGAAAGTCCCAGAGGAATTGGTTCTTTTGATGGTTCTCATTTGGCATCAGAGTATGAAAAGTCTGTTCTTCAGCTGAATCTTAAAGTTGAATCAGGTGGTCAAAGGGCTGTTGCAGCTCTAAAAGATTGGCTGC
TGAGGCAGATTTCCTGTTTATCAGATTTTACTGGTGATGTTTTCAGAAACAGATGCAACAAGTTCACGTCATCCTTTTTGCAGTTGTTTATGGATGAGGATGATCTCATGTTTGAAATGTTGCTGCAACTTTTGAATATGCCAGTACCTTTGCGACAAGTGCTATGTGGTGGAGACAAGATCTTTGATAAGAAAGTATTC
ATGGAGGCTTGCTTAGAAGCATTGAAGCCACATCTCCTTTTCTATGAACTCTTAGCAGGGATACAATATGATCACTCTGTACTTGTTGATTACCTCATTTCAAAGAGTACAGGAATCTTGTGTTTGCGGTATCTTTTGAGGTGATCCCAGCCTTTCTAGTAACAAGAGAAGGCGACACCAGCTGGCGGCCTTAAAAGAGC
CTTTAGAAAGGCATCGATCAAGTATGTTGGACATATCTAGTTTATCAACAGTTGCTTCAGACATTTCTCATATTTCTGTACCAAGCAAAGTTGAGTTAGAATCGGGACAAACATTATGCAAAAGAAAAGGAGCAGTGCAGCTTTCTCCTACGTCTAGTGTCATCAATGATGATTTGAGATTTGAAAATGTTCAGAGATGT
TTGTCATCTTTGCATGATGCTATTGAGAGTCTTCATAATAAGGGCTTGTTTCCCTACAATCCTTCTCCTTTGTTGAAACGCTTACGAAAGTTTCTGCAGCTTTGCAATGAAACGTCTGCTGATTAGATCATATGCTACAGAATAATTTCACCATATTCCATCGTGAGGACTTCGTCATGTTTGTTGCAGGTGCATGAATA
CAATGGAATAGATGTGGCATGGATGCTCGGATGCTAATTTAGCCAATGTCCAAGTCTGCCCATTTTGCAAGCAGGTGCATGAATAAAATGGAATAGATGTGGCATGGATGCTCGGATGCTAATCTAGCTTATCTCCAAGCACTAGCCATTTTAGGTGGGAATAGTGAGACCTCCACACTGAAAGCATTTTTGTTGGCGTT
CTAGCAGTGTCACCAGCATAAGAGTGTACAGTGACCAAAACGCATACATTCTAGACCGTGAAAACGAGACAGATCCCATGACAGAAAATTAGCTGTGCTTTTCTTCCAGTATTTGTCTCAGTGTCACTTTTCAGCATTATGAGTCGATCAATTTACAAGAAATCTAAGTCCGGAGGTGATAGTTGCAGATATGTTATCAT
GAGATCAATACGTCATTATCATCAGCATGTTCTTCAATGAAGCGTAATGCCTTTGATCAACAAGTCATTATAACAAACAAAAAAAGATTGTATATTTCAGGCAATGGCATTGTTTGGGAAGATTCATTATAGATGCGCATAGTTATGACTGTAATCGCATCCACCTCTTTCCTAATGATTTTGACGACATGACAACTAGC
AGCTTCATATCTGTTCATTGCACATATTAGAGCTACTTCTGAAACAATAGCCTTTATGTCGCAGGTTTAACCATAACTTTCTTGAGGACGAGACTTAATTCAGCAAGCTGTCAAGAATTTTTCATTAGAATGAAACTGAATCTTACATCTAAAAGCATACCAGCCAAGATGCATCCAAGTATGTTGAATGAATATTTTTA
ATAATTCAAATTACGTTATCTACTAAGGCTAAGGCTAGTTGTGCAAAGAGCTGTTTAAAGCAAGCACATTGTCGGATTCAAATTTAAATTAGCTAAATTGTAAAACCCAT
>TRINITY_DN48553_c1_g2_i3 from sample A7 / Example unspliced isoform:TCCAACTTCAATTCTGAAAATCAAGGGGACCCAGAGTTGTACCTCTCCTTGAAAGCGCTTCGAAAACCAGTCGGTACTCTTGCTTCTATTTTTTTGCCCGTCGAATTACTGTGCGTCAGTAATTCGTTCCATCGACGAATTCATATTCACTTTCCTGTTACTCGGTTTTTAGCACACACTTTCAGCCCCCATCGATGTCT
TCTGCTGCTCTTTCATGGCTTTGCAATTGTTTGCAAGAGAAATTTAACCTACATACTGACATTGACGCAAGTGGTATTTCAAAGGAGAAAGAAAAAGATATACTGGTTACGCTGGCTAGGGCATGCAGACACTTGCGTGACTTCGGGGATGATATTGAACATGAATCTGGATCAAATCGCTCCATTGATAATATTCACAA
TTTGACATTTTGCAGACATGAACAAAGTAAAACAGCTCACAGTTGTATGGAGATGGTTACTGAAACTTTGGTGGTTCTCCTGATAACGGAAAATGATTTTATCAGTCACTCAGCTGGGAAAACACTGTTGGTTCTATCCAATTATCTTGTAGGATTGGTCTCAAAATGGAAAATTTTTCTTCATTTGCTATGGACTTGTC
TGAAAGGTGTTTGTTTTAACCTAGAGGTCCACCTATTCTGTGCTGTGGCAAACAGCTTTGACTCATATGCAGTTGATCAAATATGCCCTACTACTGGTACTATTGATACAAAGGTTACTTATTATATTAGGTACTTGACAAAGGCAAATTGGTGTTCAAATTTGTCTGTTGGTTCAACTTGCTTGAAGAGAAGCTGTATT
GCAGCTTCACGGTTAATGGAGCTTCTTCGCAACATTCTAAAAACAGGCCAGTTTATAACTGATGAGTGTGCAGATGTCTATTTACATATTGCAGATACATACATTGTGGATGTGGCTTGGATTCTCTTACATAAGCTTTCTCTGGAAGAAACTGTTTCTACTTTGAATTCTTCGAGTGAGATTCATCCACTCTCTCTAAG
AAACAAAGAGCATCATTATGTGGAAAAGGAACTTGTTTTAGGGTCTTTACTTCAGATTCTTTGCTCCTTGGTCCATGTTATTGTTTCAAAGAATGGTGAAGTGGAAGGAGGGAATCTTTTAAATCAATGGCCTATGGTAGCAAAAGTTAATGAACTGATTCCAGCACTTTCAGTTCAAGGTCTTGCTCCACATAGTCACT
CAGGACATGATTGCATTTCAGATTTCCTGCGCCATAAGCTTTTGATGTTAATGATCAGGATTAGTGATTGCTTTCTACAGAAGCCTTGTACTTTCATCCTATGGTTGGACTTGCTTTGGAAACATGCTGCAGATCTCCTTGGTTACTCATTACCTGAAAGAAAAATCCACGAGATCGCTTTGGTGGGATCTCCGTTTTGG
ACCTCTTTAAATCATTGCAACAAAGACTCTATGATCTGCAAAATTCATTTGCAGAATCGTGCTGTCTATTTGCTGTTTAAATGTTCTTTAATTCTAATAAAAAATGATTTGGAAAGTCCCAGAGGAATTGGTTCTTTTGATGGTTCTCATTTGGCATCAGAGTATGAAAAGTCTGTTCTTCAGCTGAATCTTAAAGTTGA
ATCAGGTGGTCAAAGGGCTGTTGCAGCTCTAAAAGATTGGCTGCTGAGGCAGATTTCCTGTTTATCAGATTTTACTGGTGATGTTTTCAGAAACAGATGCAACAAGTTCACGTCATCCTTTTTGCAGTTGTTTATGGATGAGGATGATCTCATGTTTGAAATGTTGCTGCAACTTTTGAATATGCCAGTACCTTTGCGAC
AAGTGCTATGTGGTGGAGACAAGATCTTTGATAAGAAAGTATTCATGGAGGCTTGCTTAGAAGCATTGAAGCCACATCTCCTTTTCTATGAACTCTTAGCAGGGATACAATATGATCACTCTGTACTTGTTGATTACCTCATTTCAAAGAGTACAGGAATCTTGTGTTTGCGGTATCTTTTGAGgtgtttaagagttatc
tgtgatttgtggcctgattctattgaattcttacttgatatagGTGATCCCAGCCTTTCTAGTAACAAGAGAAGGCGACACCAGCTGGCGGCCTTAAAAGAGCCTTTAGAAAGGCATCGATCAAGTATGTTGGACATATCTAGTTTATCAACAGTTGCTTCAGACATTTCTCATATTTCTGTACCAAGCAAAGTTGAGTT
AGAATCGGGACAAACATTATGCAAAAGAAAAGGAGCAGTGCAGCTTTCTCCTACGTCTAGTGTCATCAATGATGATTTGAGATTTGAAAATGTTCAGAGATGTTTGTCATCTTTGCATGATGCTATTGAGAGTCTTCATAATAAGGGCTTGTTTCCCTACAATCCTTCTCCTTTGTTGAAACGCTTACGAAAGTTTCTGC
AGCTTTGCAATGAAACGTCTGCTGATTAGATCATATGCTACAGAATAATTTCACCATATTCCATCGTGAGGACTTCGTCATGTTTGTTGCAGGTGCATGAATACAATGGAATAGATGTGGCATGGATGCTCGGATGCTAATTTAGCCAATGTCCAAGTCTGCCCATTTTGCAAGCAGGTGCATGAATAAAATGGAATAGA
TGTGGCATGGATGCTCGGATGCTAATCTAGCTTATCTCCAAGCACTAGCCATTTTAGGTGGGAATAGTGAGACCTCCACACTGAAAGCATTTTTGTTGGCGTTCTAGCAGTGTCACCAGCATAAGAGTGTACAGTGACCAAAACGCATACATTCTAGACCGTGAAAACGAGACAGATCCCATGACAGAAAATTAGCTGTG
CTTTTCTTCCAGTATTTGTCTCAGTGTCACTTTTCAGCATTATGAGTCGATCAATTTACAAGAAATCTAAGTCCGGAGGTGATAGTTGCAGATATGTTATCATGAGATCAATACGTCATTATCATCAGCATGTTCTTCAATGAAGCGTAATGCCTTTGATCAACAAGTCATTATAACAAACAAAAAAAGATTGTATATTT
CAGGCAATGGCATTGTTTGGGAAGATTCATTATAGATGCGCATAGTTATGACTGTAATCGCATCCACCTCTTTCCTAATGATTTTGACGACATGACAACTAGCAGCTTCATATCTGTTCATTGCACATATTAGAGCTACTTCTGAAACAATAGCCTTTATGTCGCAGGTTTAACCATAACTTTCTTGAGGACGAGACTTA
ATTCAGCAAGCTGTCAAGAATTTTTCATTAGAATGAAACTGAATCTTACATCTAAAAGCATACCAGCCAAGATGCATCCAAGTATGTTGAATGAATATTTTTAATAATTCAAATTACGTTATCTACTAAGGCTAAGGCTAGTTGTGCAAAGAGCTGTTTAAAGCAAGCACATTGTCGGATTCAAATTTAAATTAGCTAAA
TTGTAAAACCCAT
Intron 8 GTGAGTTACA ... CTGTAAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.1 | 66.3 | 29.7 | 30.7 |
| A2 | 31.04 | 55.7 | 25.3 | 22.3 |
| A3 | 28.31 | 32 | 13.3 | 21.3 |
| A4 | 21.99 | 51.3 | 15.3 | 7.3 |
| A5 | 33.65 | 17.7 | 9 | 8 |
| A6 | 16.3 | 117.3 | 25.3 | 9 |
| A7 | 13.36 | 132 | 23.7 | 17 |
| A8 | 14.93 | 180 | 39.3 | 21.7 |
| A9 | 16.69 | 163.3 | 36 | 12.3 |
| A10 | 12.9 | 144.3 | 25.3 | 8.7 |
>TRINITY_DN119091_c2_g1_i6 from sample A2 / Example spliced isoformTGAACTTGGATTTATTGAGCAAATTGATTCAGTAGAAAATGTTTGCTCGAGTCCCTCATTTGTACGTTCATTATTTAGTGCTACGTTGCATGATTCCATTGAGGAGATTTCTCGCACCATCATGCATGATGCAGTACGAATAATTGTTGGTAGAAACATCATAGTTGATACAACAGAAATTTTGTTGGAAATGAGGAAGG
AAAGCTGCTTGCTCTTCGTCAGATTTTTGGGGAGGTGAATTTGAAAGTGAAGGTAGTTTCGGTTGCATTACCTATCACTGCAACTGCTCAAGCGAAAAATCCGTCAACAACCTGGGTCATCTTAGACAAGTTAAAGTGGAAGTAAAGGTGTTGGTTCATAACTTCATTGTAGTGTAGAGAAAGGCCTGGTTGACGAAGTT
ATTGCTTTGGTGGTTTCCTTTCTCATCCTCGGAGCTTCAACCCATCAAGTGAGAAGGTATGTTGATGTGGTTGTTTCTCTGTTCTTTGTAAGAGTTTATGTGAGAAATTTTCCAGATTGGTGTGGTGTGACTTACCATGTCCATTTCAAATAGATTCCTAGGGTTGAGAGTCAAGACCCTGCAACATGTCGATAAGACTA
GGATTCTTGTACTTAAACATTGTTTGTGGTCAGTTTATTGAATCATAATTTAGTTGATTGTTCTTTTATTCTTTCCAGTAAATGAAAAAATGAAAAAGAGCTTTGTTGT
>TRINITY_DN119091_c2_g1_i12 from sample A2 / Example unspliced isoform:TGAACTTGGATTTATTGAGCAAATTGATTCAGTAGAAAATGTTTGCTCGAGTCCCTCATTTGTACGTTCATTATTTAGTGCTACGTTGCATGATTCCATTGAGGAGATTTCTCGCACCATCATGCATGATGCAGTACGAATAATTGTTGGTAGAAAgtgagttacataaaatccattttttcctacgctatacctttcat
ttctatattttgatatttactaggattcttcatgtcatgataggatcaacttttgaatgcatttaatattctatgtattacacagatttccaagtatctgcactattttaaccagggggtatatcttattctgtaaaaagCATCATAGTTGATACAACAGAAATTTTGTTGGAAATGAGGAAGGAAAGCTGCTTGCTCTT
CGTCAGATTTTTGGGGAGGTATGTTTGAAAAAATCCACGAGTATCTCTTGTCCTGCAACACTGCTATGTATTGTTTTTCATATATTATCTTTATATCTGGTGTGGTGTTGCTATTCTATCTTCAATATTGTATTTCATTGTTTTCATCTAAATTAATTTTAAATAAATTCTGAATTAAAAACTGTAAATTTATTTCAATA
CTCTGACCCCAACCCTTGACATTCTGCTGTGTTACCTTCATTGGAAAGTGGTAGTAGAAAAGTCCATATTGTCATTATCAACATTCATTAGCAGTGGAAGCTTTATCACAAACATTGTAGAGTCAAATATTTCGAAGTTTGGACCTTAGGTTTCTTTTTAACACCTTCAAGGGTTGAGACCACTTGGGGATTAATCGTAT
TATTTTGTTTAAATTTGAATTTATTTCGTTTGTTTAAAATTTGATAAGGAATTTTGTTTAATTTTAAATATATCAAAATTATCTAAAACTCAATTAAAGTTTTAAATTCGGATGCAACATTGAATTCCACAATAATATAAAATTAAATAAAATCTGTTAAATATAAACAAATTTTTTAATTATAAACAATAAAATTAAAT
AAAACAATTTTAAAATTAATATATGTTAATTATAATTAATAAATGTTTATTATAAAATAAAATTGATGGTTTTAACATTATAGTTATTTGTTTGCTAGAATTTCTCTAATTTGGCCTTTGGCTTAAGAAACCATGATGAGACCCACACCTTAACCAAACGAGCTACCGGAAATTGACAACATCATAATTATAATTATTTA
TTAATATTACTCTTTATTAATCCTCATTCCAACTTGTGTTTAATGTGCCATGAAGTGATGGAGCTTACCTTTACATTTAACTCTGAATGATTCCCAAAGGTGGTGAATAATATGGACTAACATTATTACCTTCAGATCAAGAATTTAGGCTTCAAGACTCCTACTTATGCTAAATATATTGTGCTCTGCCTCTTATCCAT
TTGTACATGTCAATTTGATTGTTGGATGTTTTATTCAAAGAAGGATCACGGTATATGGCTTAATGAGATGGTCTCATTTATTTTTAGATACCCTTCATTACTTCGAGTGGCAGTGTTTTCCCTTTCATCACCTTTATGGTTTTGATGATGAAGAACATGGAAGAAATTGAGGGTGTTGAGGTTCTTGATCTCATAATTTA
TTCTTTCAATCCATCTAGTGAGAGTGATGTATTTGAGAGAGGTGACACCATGAACCAAATTGATTATAATTTATGAGTCTCCAAACACTTCGAGGCATTCTAATACTAGAAGACAAGCTTGTAAGAGGCCTTGATAAAGAGCAATAGCTTCTGCTTGATTGTTTGTGTTTTTTCCTAGTTCTCATTCGTAGTGTAGTTCT
TATTTCCTACTGGGATCCAAAAGTACCCCTCTTGCACCTATAGCCCCTGGGTATCCCTTTGAGGCTCCATCAAAGAACATGATGCTTTTTATTTACATAATTTTCCCATTTTGGAACTCATCATTGAACAGCTTCAATTTCTATTTCTTGTCTACTTGAGAGATGATGACTTTTTTTTGCAAAGAGGGTGGTTCCAACAT
ATCCTTTAACTAGTCCCTTTCATTTTTATCTAACTGTTGCATATTCTGATTTAAATCCTTCTTAGTTTGAAGGTAATCTTTTCATAGTCTGCGAGCTTTTATGGCTATTCTTCGAGGGTTGTCACACTGCTCTTGAAAAATAGTGTCATTCCTAGATAACCACACATTCGAGCAAAGATACTTGGGGAGAATATTCCAAA
CTCTTTTAAGAAGAGGTTTTATTTGAAAATTTCCTTTGTTTTCGATATTCTAGAAGGGCTCAAAAGTCCTCTCTGCTATAAATATTAGTAGTTAATAGTTTGTCATGCACTAGAATATGGAATTGATTATATTAACTTTGGAAATGCCGTTTGGATTCCAAACATACTTCCACATCCTGGAATTCCGAGGAAGAGGAAGA
TTTTGTAGTTCTGAATTGTATCCTCTCTTTTGTTACTGGGAGCACAACCGTCCAAGGCTATGTGTAGCTCATTCAAAAGAGGCATCAATTTTTAATGAGTGTTAAGAACTTTCTAGCCTATACATTTATCATTACTCTCATTCCAATTTGAAATATCGCACGAGCTTTTCATTCCTTGCTCATCCATCCATTGTTTCAGA
TGTATAAGATTTTGTTTTTGCGTCAGAGGAGGCCTCCCCATTATGTTGTTTGCTTATACTAAGATGCATAAGGGCTCCTTTTTGTTACAACTTGATAATATGATATAAAGGGGATATTAAAAATGGGTTGATAAAAATAGATACGTGCAATATTTGGTGAAAGTTGGGGTTTTCTTA
Intron 9 GTATAAACTC ... CCTATAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.73 | 45 | 6 | 14 |
| A2 | 33.33 | 18 | 6 | 9 |
| A3 | 37.04 | 34 | 6 | 20 |
| A4 | 16.22 | 31 | 2 | 6 |
| A5 | 8.33 | 11 | 0 | 1 |
| A6 | 26.32 | 28 | 1 | 10 |
| A7 | 36.56 | 59 | 1 | 34 |
| A8 | 20.72 | 88 | 9 | 23 |
| A9 | 24.39 | 62 | 2 | 20 |
| A10 | 33.87 | 41 | 2 | 21 |
>TRINITY_DN47382_c1_g1_i16 from sample A10 / Example spliced isoformCAGAAACAGTTAAATACATCCTTTCAGTCGTTGCGATGTATATGGAAGGGAAGAGGAGAAACGTATACACTGCAGTGGAGTGAAGTGGGTTGACGACGGATGTCTTGTGGTCACACCAATGGTGATAGTAGAAAGAAGGGGGGAAACCCCTCCCCTTCGAAGAGTTGCAGAAGCAAAGGGGATAGGCGCGGCCGAGAGCG
ACAGATGCGACCCAAATCAGGAGGAGGAGGAAGAGCTGCCAAGCATCGCCTGCTGGTGGTGGCCAACAGGCTACCTGTCTCTGCCACGCGAACGGGCACTCATTCATGGTCCCTCGAGCTCAATGCGGGAGGCCTCGTCAGCGCCCTCTTGGGCATAAAGCAGATCGAGACCCGATGGATAGGATGGGCTGGTGTCAATG
TGCCCGATGAAGATGGCCAACTCGCTCTTGCTAAAGCTTTGGCAGAGAAGCGGTGCATACCAGTGTTTCTGGATGAGGAGATTGTTCACCAGTATTACAATGGATACTGCAACAATGTTCTTTGGCCTCTTCTTCACTATCTTGGGCTTCCTCAAGAGGATAGACTTGCAGCTACCCGCAGCTTGCAGTCTCAGTTTGAA
GCCTATAAGAAGGCTAATCAGATGTTTGCTGATGTGGTATATAAACACTACAAAGAAGGAGATGTGGTCTGGTGTCATGATTATCATCTCATGTTCCTTCCAAAATGTTTGAAAGATTTTGATAGTCATATGAAGGTTGGATGGTTCTTGCATACCCCTTTTCCTTCTTCAGAGATTTATCGGACACTGCCCTCACGGGA
TGAGCTGCTCAAGGCAGTTCTTGCAGCTGATTTAGTTGGTTTTCATACATATGATTATGCCCGACATTTCGTAAGTGCATGCACACGAATTCTTGGGCTGGAGGGGACTCTGGAAGGAGTGGAGTACCAGGGAAAGTTGATTCGAGTTGCAGCGTTCCCCATAGGCATTGACTCAGAGAGGTTTACAAAAGCACTTGAGT
TGCCTGAAGTCAAGGAGCACATCAGACTCTTAGAAGAAACATTTGCTGGTCGAAAGGTCATGTTAGGTGTTGATCGTTTAGATATGATTAAAGGCATTCCTCAAAAGCTTTTAGCATTTGAGAAGTTCCTTGAAGAAAATCCAGCTTGGCGGGACAAAGTGCTTTTGGTTCAGATAGCTGTACCCACAAGGACAGATGTT
CATGATTGATCGATCACTTGATTTTCATGAACTTTGTGCACTTTACGCTATTACAGATGTGGCACTTGTAACCTCTTTGCGTGATGGGATGAATCTCGTAAGTTATGAAGTTATAGCTTGTCAGAATTCTAAGAAAGGAGTGCTGATCCTTAGTGAGGGAGATTGCCATTTGAAGGGAGGCGCTACACTTGGAGTGGGAG
CTCCGTTCTAGTGTTTTTCCTTCGAAATAATCACAAGGGAGTTGTCTTTGCTTTCAGCTTGCCAATTCTTTCATTTTCAGCCATTCATTTTCTGTTATTACTTGTTTATTTGCTGCATATGCTGATTTCTCTCATTTGTGGCAGGTATCCAGGCAAAAGGTGGTCACAACACTGCTCAAACGCTCACACAAAATTGCTGG
TTGCTCTACTACTGAATTGGAGTTGGTCTTCAAGCCATTTCAGCCACACTTCTTCATCCTAGTTTGCTGGGGCTGCACAGTCTCTCGGTGCTGGAGCCATACTTGTAAATCCTTGGAATATTTCTGAGGTTGCAGTTGCCATTGGCACTGCAATGAATATGCCAGTAGAAGAAAGAGAGGAGAGGCACCGCCACAACTTT
GAGCATGTTACTACTCACACTGCCCAGGTCTGGGCTGAGACATTTGTTAGTGAATTGAATGATACGATCCTGGAAGCGCAGCTAAGGACTCGCCATATACCTCCTCAACTTCCAGTAGACAAGGCTGTTGAAAAGTATGAACAATCAAATAATCGACTGCTTATATTGGGTTTTAATGCAACAATGACTGTACAAGTTGA
TACACCTAGTAGAAGAGGTCATGACCAAATCAAAGAGATGAAGCTCCGTTTACATCCTGATCTAGGGGAAACCCTTTCAGTTCTATGTAAAGATCCAAAAACTACTATAGTTGTGCTTAGCGGAAGTGAGAGAAATGTCTTAGATGAGAATTTTGGCGAACTCAACATGTGGTTAGCGGCTGAAAATGGTATGTTTCTGC
GCCATACGGAAGGAGATTGGATGCTCACAATGCCAGAATATCTTAATATGGACTGGATGGAAAGTGTAAAGCTTGTTTTCGATTATTTCAAAGAAAGAACACCTCGATCATATGTTGAGGTTCGAGAAACATCTTTGGTTTGGAACTATAAGTATGCAGATGTTGAATTTGGCAGAGTTCAAGCACGTCATATGTTACAG
CATTTATGGACTGGTCCTATATCAAATGCTGCTGTTGATGTTGTTCAAGGTAGCCGGTCTGTCGAGGTCCGTTCAATTGGTGTTTCTAAGGGGGCAGCAATTGATCGGATTTTGGGAGCAATTGTACATGGCAGAAACTTGACAACACCAATCGATTATGTCCTGTGTATTGGTCATTTTTTAAGCAAGGATAAAGATGT
ATACAATTTCTTTGATCCAGAACTCCCTTTTGATAAAGATGGGAATGGAGTAATTGAAGAAGAAAGGAAGCAGCCATCCAAAAAGAGCAGTAATACCAAATCAGAAGATACAAGTGACACTGAAAATGAGAGAGGGAACGTGGGTTCGCAGGATGGATCATCTGTACTTGATCTAAAGGGGGATTACTACTTTTCTTGTG
CTGTTGGTCGCAAGCGATCTAATGCACGTTATTCTCTTGCATCCTCAGAGGAGGTCATTGCTTTTTTAAATGCTCTCGCAAAAAGAAGCTATTCACATGATAAACCTCAAACAAATGGTTGACACGATCGTTATAAATTACTTCACGTATGAATGGATCTAGTAATAGAAATAGCATGTGATGGTGTGCAGAATGCCATA
CAAAAAGTTTGAGGGGTTAATATTCCTTTTGGGTTATCCATTTCAACTATCGGAAAGGTTCACCTTAGTTTTTTAATTGTAAAATTAATTCATTAAATAAAATCATTCTTTCATGTAAAA
>TRINITY_DN47382_c1_g1_i27 from sample A10 / Example unspliced isoform:GAAATGTCTTAGATGAGgtataaactcaactcttattcaatgaattattctgaaatgttttctgagcttgctacttacatgacacattcctatagtagAATTTTGGCGAACTCAACATGTGGTTAGCGGCTGAAAATGGTATGTTTCTGCGCCATACGGAAGGAGATTGGATGCTCACAATGCCAGAATATCTTAATATG
GACTGGATGGAAAGTGTAAAGCTTGTTTTCGATTATTTCAAAGAAAGAACACCTCGATCATATGTTGAGGTTCGAGAAACATCTTTGGTTTGGAACTATAAGTATGCAGATGTTGAATTTGGCAGAGTTCAAGCACGTCATATGTTACAGCATTTATGGACTGGTCCTATATCAAATGCTGCTGTTGATGTTGTTCAAGG
TAGCCGGTCTGTCGAGGTCCGTTCAATTGGTGTTTCTAAGGG