sp|Q9XER9|HUA2_ARATH ----> ENHANCER OF AG-4 protein 2
Intron 1 GTAATAATGA ... TAGAAGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.88 | 234 | 91 | 64 |
| A2 | 24.58 | 181 | 79 | 39 |
| A3 | 22.24 | 243 | 91 | 48 |
| A4 | 23.2 | 192 | 74 | 42 |
| A5 | 19.72 | 57 | 19 | 9 |
| A6 | 26.32 | 63 | 24 | 21 |
| A7 | 23.3 | 260 | 102 | 56 |
| A8 | 26.27 | 87 | 41 | 21 |
| A9 | 22.1 | 178 | 67 | 34 |
| A10 | 22.14 | 255 | 84 | 61 |
>TRINITY_DN111248_c0_g1_i17 from sample A2 / Example spliced isoformTTAAACTCCCTATTGGTTACATAAGACACGCCAAAGAACAAAAGATTATATATCAATGGGAGGGGAGAGATCTTAAATCTTGAGATATAAAAGGGTTTGGTCGATATTGAGCGGACCCTCAAAATTGTTAAATTCCATCGCAATCTTCGCTTGCAATTGATCTTCCATTCTTCATTCTTTCGCTTTCGATTAATTATTAC
TGCCAGAGTTTCAAAGGTCGAAACCTGCGGCCAGCGGATTCCATCGTGAGCCTATTCCTCCACTGCCAAGGAGCCACGGAAATATTGCCACTAAAATATTAATCGATAATTTAACAGGTACCCAATTGTTATGAGGCATTGATACGATTGTGGCGTCGGGGCAGGGGAAAATTCATGGTGTTATGGAAATTCTGGAAGAG
GAGGACTGGGAGGGTATAATACTTGTTTAGGGTATGCCAGAGAGGAATAATAATAAAGGCTACGTTTGCCGTTGCCATCAGGGTTTTACGACATGGCACCGGCTAAAAGACGAGGAGGCAAAACAGCTGCCTGCAGACAATGGAGGCTTGGAGATCTTGTGCTCGCCAAGGTCAAGGGATTTCCGGCATGGCCCGCTAAG
ATAAGCAGGCCTGAAGATTGGGAACAACTACCTGATCCTCGGAAGGTTTTTGTGTATTTCTTTGGTACAGATGAAATTGGTTTCTGTGCTCCTACTGACGTTCAGGCATTTACCTCTGAGTTGAAAAATAAGTTATCAGCCAAATGTCGAGGGAAGGCTGAAACTGACTTTACTCGGGCAGTGAAAGAGATATGTGAGGA
GTATGATGATAAAGGTATAGAGGAAGAGGACTTTATCCCAGAGATTGATGATGGGAAATCCAGATCATGTATTGATGAAAGCTCAAAGGATTCCGCAGAGAAAGTACAGTTCACAAAAAATGATAAAATCCAAGAAGCAACTGAGGCAGAGGACATGTTGGAAATCCATAAAGATACATCTATTCAAATGCATTATGAGA
CTGTCATCAAGAAACATGATATTAAGAGGGACGTACATAGGCAGGATAACTGGCAAAAGACACGTGGGGTTGGTGAGAATAAGAAAAAGCCTGCTACCTCTCTGATCTCGTCTGATAAGAAAGATAGGAAGATGCTCAATGCAGTCCAGGTTGGGCTTAAAAAGCACAGTTCATTATCAACATCTAAATCTGACAACATG
AGGTCCATGCTAAAGATAAAGAAGCCTACAAGCCATTTTGAGGACCATTTGAGGTCTGATGTTTCTGGTGCAGTGCCTACAAGCCTTTTTGAGAACCATTTGAGGTCTGATGTTTCTGGTGCAGTATCTACAACAGCTGAGCCAGAGTTGAAGACAATAAAGAGAGATTTTAAAAGGTCATCAGAGAGTGAAAGCAATAT
TCATAATGACGGAGACAACATTATGATTTTTTCTTCTTATCTTGAATAAAATGGGGCACATTCACCAGATACAGGCATTATTTCAGAGCAGACCACGAGTGAAAAGCAGTTTGGTCAGAAAAGGCAAAGCATGGAAAAAGAAATTAGAGGTTCTCGATTAGTGCCTGAAAGTGAGCTCCTAGATCGTAGAAAAACAGTGA
CAGATAACAGTGTTAGCAATTTTGAATCTTTTAAACATGGAAACACTGAAGACAGCATTCAGGTATCAAACTGTAAAGAAAATTTGAAGGGTGAAAAAGATTATGAAAATATTCATGAAAATTCTGTTCCTAATGACAAAGATCATGTGCTTTCTACATTTATGACTAGAGAGAATGAAGTTAGGGTAGTTCCAAATACT
TCTTTTCATCAGAATTCCATTCTGAAGAAGAAAAGAAAGCTCTTGAAGAAACATAATTCCGGGTTATCAATTCTACCAGAGAGATCTGACGATCAAAGAAAGATAAATATCTGCACGGAAGAAGAAAATGTTCTTGAATTATTATCAGGAGTAGATCATCGAAAGAAAAGGACACAGATTAAGGCAAGGAAACATAAACT
TAACTTTGATGAACATTTGCATTTGGTAAAAAGGGCAAGAAATGAAGCTGAAGATGAAACCAATCAAATTTTACAAGGCTTGAATAAAGGAGGCGTAATAAGTGCCATGGACAATAATGGAGAAAATATGGCAGCAGATAATGCTTTTGTGTTAAATGAATGCCATTTGAGAACTAATAATATCATAAGTTCTAACAGTC
TTGAAACTGAAGGAGATTTGTCGCATGGGCAGACGTCTTCAATTCTCATGGAAAGGCCTATGTGTTTGCCACCAAAGGCTGATAAATATCGTTTGAGAAGTAGCCTACCGAGTGATGAAGCTGCCCTGCCTCCCTCTAAACGACGTCACCGGGCTCAGGAAGCTATGTCTGCATGTGTTGCAGAGGCTGCAACTGCTTTA
GTGGAACCGGTGACAACTGGTGTGATTGGACAGGATGATGCATACAAGATTTCTGCAGATGAAAAACTTTATACTAAATGCTTTGATAATGACAAGAAGTCAGTTAAGGGAAATGAGGAATGTGTCAAAGTAGACACGTTGATTCAAAAAGAAGCAAAAGAAACAGGAGGTAGCAAGAAACCTGTGGTGTCTTCAGATTC
ATATCACTCCTTTATGAGGTTTTCTTCAGAACCTGCTAAATGGGTAGAGGAGAAGCAGATGGATCCATGGTTTGGAGATTCAATGTCCTATAAGCATATGGATAAATGGCAGATTGGAGATAAAGATGAGAGGAATGCACACGCTAAAATGTCTACTGAATCATCATTGACTGATAAAAAAATGGAAGAACAAAAGCTAC
AGAGCATGACTGGACCAGTGCTGCCTTCTCCAAAGAAGCAAGATGGTTCAAATTTAGCTTCAAGACAAGTCAATTCAATCAGCACACCTCCAATCAAGGCTTATGTTGCACAAAAAGGTGAGGCTGACCAATATGAATACAAGTCAAAGAGCATCAGGGTGAAGAAATCTTGTGCGACCCCAGCAAAGAAAAATAGCAGA
GGCCTTAAGAAAGATCATGGGCAGTCTGGCTCAGACAAGCTTAACCAAGGGCAATTAGCTAAGCAGTTGGCTGTTCGCAAGCATGATCAAGTTTCCCCCATAAGATCTGGCACTGAACCTTCAGCAGAAAAAGTTGCAGGTTCTTCAAAATTTAAGGTGAAGATAAATGGTACTGCAGCAATGAAATTGGATGGTGTGTC
ACAATCTACAGAGTTGCATTTAGAAAAAGCAAACAAGCTTAGACAAGTGTATGATGCTGCATTGGCAAAAGAAATAAAATTCAGAACTATGTCAAACGATTCTGACATTGCTACCCCATCTACATCTATGAAGCATCTTATAGCAGCTGCACAGGCTAAGCGAGAACAGGCACGTTCTGCAGCTCTGCCACATTCTGTTT
CAATTGAAGAAACTGATAATTCTATTCCTTTTATATCCAGTCCTTCACCAATCCGAGGGAGTAGTTCAGATCACAGTTCCCCACTCCAACATCACTTTGATGGTGAGGCACCTGAGGATACGAAGGATGCCATTGCCCATACAGAATCAAGAAGCCCCAGAGTTAATGTGCAGCAGTGGGGTCTGCCGAATACAATGGAT
CTGGAATCAAGTGAAGAAGGTAAAAGAAGCTCAGAGCGAAAATCGGTTGGAGGGACAATTAGTGGGGATACAGAAGCAGCAATTGCCAGGGATACTTTTGAGGGAATGCTTGAAACGCTGTCAAGGACGAAGGAAAGTATTGGCAGAGCATCTCGTCATGCTATTGACTGTGCAAAATATGGCCTTGCTGGTGAGGTTGT
TGAGCTTATTGTTAAAAGACTGGAAAATGAAACGAGTTTCCACCGGAGGATAGACTTGTTCTTTCTAGTGGATTCAATAACCCAATGTTCACACACCCAGAAAGGTATTGCTGGAGCCACATATCTTCCTGCTGTGCAAGCTGCTCTTCCACGATTGTTGGGTGCAGCTGCTCCCCAAGGAAGTATTGCACGTGAGAATC
GTCGTCAGTGTCTTAAGGTTTTGAGGCTTTGGCTGGAGCGAAGAATTCTTCCGGAACCTGTTCTGCACCGTTACATGAATGAGATTGGACCTTCAAATGATGACAGAGCTGGTGTTATCTCATCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGCTTGATGAATATGGC
AGTAATACAACTTTTCAGTTGCCAGGTTTATTGATGACACATATGTTTGAAGAGGAAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGGTTGATGAATATGGCAGTAATGCAACTTTTCAGTTGCCAGATTTCTTGATGGAGGAACCAAGTGCAAATGACTTGAAGAAGTGTGATGACAATTTACCCGT
TGAAGCTGTTAAAGCACAAGAAGAGCCAAGAGAGAGTTCCGTTGATCCTATGGAAAGGCATCGGCACATCTTGGAGGATGTTGATGGTGAGCTTGAAATGGAAGACATGGTTGATGAATATGGCAGTAATGCAACTTTTCAGTTGCCAGATTTCTTGATGACACATATTTTTGAAGATGACGAGGAACCAAGTGCAAATG
ACTTGAAGAAGTGTGATGACAATTTACCCGTTGAAGCTGTTAAAGCACAAGAGTCTCCCCACCACCAGAATATGATTCAAGCTCCTGTAGAGATCATTATATGCCGCCAATGACAGCACAAGAGATGGCTCACTGTTCCTTACCTCCAGATCAGAGCAACCTTTGCCCTCAGCCTCCACTACCTAATGATCCACCTCCAT
TACCCAATGATCCACCTCCATCCCCTCCACCCTTGCCTCCATCCCCCCCTCCACCACCACCCAGTTCTCCCCCACCTCCTCCACCTCCCTCTCCTCCCATTGTTTGTCCACCACCCTTACCCCAGTCATATACTACACCTTTAAATGACTCTCAACTACATCTTTTATCTGGAAATACTCAGCAGCCTCCTGGTCAGGTT
GTTAATAATGCAGCAGTATTTGATTCTTATAATTCTAATGGATTTCCAGCATCTCAGATGCTTCCTGGCCAAAATATTGTATCTTTCAATTCTAGTAGGCCTTTCGATTTTTTACAGAGTAGCATGCCTGGGGTCCCTCAGAGTGCACCTCCTGTCCAACAGTTGCAAATAAGTAATACTAATGTCTCATATACTCAGCA
CTCATACTGCCCACCTCCCCCTACTCTGGCACCATCTAATCAGTTTTCCTATGTAAGGGCTGAAAGTCGACATCCCTTGCAACAAGCTTGGTTAGATTCTTCTCCATCTCCGATTCCTGAATGTGAGAAAATATCTGCTCAAGATGAACAACAGAGGTTTCTCCAGAGTGAAAGAAGTGTAAGACTGGAGGATCAGTTGT
TGAACCAACAGGCAGGGGGGTGCAAAACATTGTGTGCAAGTTCAACGTTTGGGCAAGAAGTCACCCCTGGAATGCCTTGGCCATCTGGAGGAACCCAATATTCTTGTGGGTTGCAGCTGCCAGCACAGAACCAGATGATCATAACATCTGGAGTTCCACAGCCAAGTATGGATATGGCATTTAACACTTACTCGGGTCAG
GCTGCAGGGTTAACAGGCAGCTTGGTTGCAGCACCTACGAATCACGTTTTGATCCATATGTCTAGATCTGGTATTTCTTCTGCAAATTCTTGGAGGCATACGTGATGGACCATATGGGAAATGAAAGATGTCCTGATTTCGAGTGGAAGCAAATAAGCTGTGCAATGGGCAAGTTTAATCCTCAAAAGAGCCGGTGAGAG
AAGATTCCTTATTCTGGAGAAGTCTGTAGATTTGATGTATGTTGTTAACTTTCTTAGACTTTGGATATTGCCGGCAAATAGGTTGATATTGTTAACTGTATATACTGTAACTTGCTTCACTATCTGCATTTTGCAGATGCATATAAAATTGTGCTTCTCTCATTCTTTCTGATAGCAAGTTTCCCAAATCTCAATGAATG
AGTCATATGTAACATGAATTGATTGAATCAGAGATCGTAATTTCAGTCTTGTCTTGGCCTTCTGTTGGATTATATTCTTCTAATCAGAGCATATTGTACATCTCCCTTTGGGATACTCAATATACACAGTAAATATAAAATCTGTCTCTTCCAACGGGTTGCCTTCTGAAGGAAAGCAATTTTGGAATTAAGTGTCCACT
ACAATTTTCTTTGTAAATGATGACAATTTTGAGTTTCATGACTTTGTATAGTCTCCAGAGCTGTTGCATCACACAAGAGGATGCATGCATATTTAGACTATATAGCCCAACATTCAATATTATGTGTGACTTCAGTGTTGATATTTATTGGGGTCTTAAAGGGATCCCATTAATTGCACTCCATTGTGATCTACTACTGT
GCGAATCCCTATTGACTGTGGTCCAATCATAGTGCATTTACTATAATTTTTTACAAATGAGAAGGGCGAAAATTGTCATTTCAGTCAACTAGTGTAAATGGGGCTAACTAGAGTAGTATGCTGATGGTTCAGTAGGCTGTATACGAATAAGTACATTTTAAGCAAGTTGGAGGAGTTCATCAATGTATCTCTTATTTTTC
AAAAGGCAAGACTGGGAACCAAAAAAAATTGCATGTAGAGGAAAGTCAAGACTGGGAATCAAAACAAATTTGCATGTAAAGGAAGAGAAATTTGGAAGGCTATTCCTCGATGTTTTCTCTTACGAGTTTACAACAAGCCTTTTATTTTAATCTGTTTCTGGAGGACTAGTGAGGAATTGCCATCTATAAATGGAGTATAT
GATATTGACAGAGTTGTCGTTTATATAATTGTTCTTAAACTTGTATATATATCCATAATATCGATAATTTTTCAATGTTGTAAATATGGTAGGAGATATATAATAGGTAGATTTGTATCCATATACAAACACACATCCAAGAATTTCAAACCCTCAAATTTTTTATTTAACATTATATGAAATGTCAAAAGTTTATACGC
TCG
>TRINITY_DN111248_c0_g1_i14 from sample A2 / Example unspliced isoform:TTAAACTCCCTATTGGTTACATAAGACACGCCAAAGAACAAAAGATTATATATCAATGGGAGGGGAGAGATCTTAAATCTTGAGATATAAAAGGGTTTGGTCGATATTGAGCGGACCCTCAAAATTGTTAAATTCCATCGCAATCTTCGCTTGCAATTGATCTTCCATTCTTCATTCTTTCGCTTTCGATTAATTATTAC
TGCCAGAGTTTCAAAGGTCGAAACCTGCGGCCAGCGGATTCCATCGTGAGCCTATTCCTCCACTGCCAAGGAGCCACGGAAATATTGCCACTAAAATATTAATCGATAATTTAACAAGTACCCAATTGTTATGAGGCATTGATACGATTGTGGCGTCGGGGCAGGGGAAAATTCATGGTGTTATGGAAATTCTGGAAGAG
GAGGACTGGGAGGGTATAATACTTGTTTAGGGTATGCCAGAGAGGAATAATAATAAAGGCTACGTTTGCCGTTGCCATCAGGGTTTTACGACATGGCACCGGCTAAAAGACGAGGAGGCAAAACAGCTGCCTGCAGACAATGGAGGCTTGGAGATCTTGTGCTCGCCAAGGTCAAGGGATTTCCGGCATGGCCCGCTAAG
ATAAGCAGGCCTGAAGATTGGGAACAACTACCTGATCCTCGGAAGGTTTTTGTGTATTTCTTTGGTACAGATGAAATTGGTTTCTGTGCTCCTACTGACGTTCAGGCATTTACCTCTGAGTTGAAAAATAAGTTATCAGCCAAATGTCGAGGGAAGGCTGAAACTGACTTTACTCGGGCAGTGAAAGAGATATGTGAGGA
GTATGATGATAAAGGTATAGAGGAAGAGGACTTTATCCCAGAGATTGATGATGGGAAATCCAGATCATGTATTGATGAAAGCTCAAAGGATTCCGCAGAGAAAGTACAGTTCACAAAAAATGATAAAATCCAAGAAGCAACTGAGGCAGAGGACATGTTGGAAATCCATAAAGATACATCTATTCAAATGCATTATGAGA
CTGTCATCAAGAAACATGATATTAAGAGGGACGTACATAGGCAGGATAACTGGCAAAAGACACGTGGGGTTGGTGAGAATAAGAAAAAGCCTGCTACCTCTCTGATCTCGTCTGATAAGAAAGATAGGAAGATGCTCAATGCAGTCCAGGTTGGGCTTAAAAAGCACAGTTCATTATCAACATCTAAATCTGACAACATG
AGGTCCATGCTAAAGATAAAGAAGCCTACAAGCCATTTTGAGGACCATTTGAGGTCTGATGTTTCTGGTGCAGTGCCTACAAGCCTTTTTGAGAACCATTTGAGGTCTGATGTTTCTGGTGCAGTATCTACAACAGCTGAGCCAGAGTTGAAGACAATAAAGAGAGATTTTAAAAGGTCATCAGAGAGTGAAAGCAATAT
TCATAATGACGGAGACAACATTATGATTTTTTCTTCTTATCTTGAATAAAATGGGGCACATTCACCAGATACAGGCATTATTTCAGAGCAGACCACGAGTGAAAAGCAGTTTGGTCAGAAAAGGCAAAGCATGGAAAAAGAAATTAGAGGTTCTCGATTAGTGCCTGAAAGTGAGCTCCTAGATCGTAGAAAAACAGTGA
CAGATAACAGTGTTAGCAATTTTGAATCTTTTAAACATGGAAACACTGAAGACAGCATTCAGGTATCAAACTGTAAAGAAAATTTGAAGGGTGAAAAAGATTATGAAAATATTCATGAAAATTCTGTTCCTAATGACAAAGATCATGTGCTTTCTACATTTATGACTAGAGAGAATGAAGTTAGGGTAGTTCCAAATACT
TCTTTTCATCAGAATTCCATTCTGAAGAAGAAAAGAAAGCTCTTGAAGAAACATAATTCCGGGTTATCAATTCTACCAGAGAGATCTGACGATCAAAGAAAGATAAATATCTGCACGGAAGAAGAAAATGTTCTTGAATTATTATCAGGAGTAGATCATCGAAAGAAAAGGACACAGATTAAGGCAAGGAAACATAAACT
TAACTTTGATGAACATTTGCATTTGGTAAAAAGGGCAAGAAATGAAGCTGAAGATGAAACCAATCAAATTTTACAAGGCTTGAATAAAGGAGGCGTAATAAGTGCCATGGACAATAATGGAGAAAATATGGCAGCAGATAATGCTTTTGTGTTAAATGAATGCCATTTGAGAACTAATAATATCATAAGTTCTAACAGTC
TTGAAACTGAAGGAGATTTGTCGCATGGGCAGACGTCTTCAATTCTCATGGAAAGGCCTATGTGTTTGCCACCAAAGGCTGATAAATATCGTTTGAGAAGTAGCCTACCGAGTGATGAAGCTGCCCTGCCTCCCTCTAAACGACGTCACCGGGCTCAGGAAGCTATGTCTGCATGTGTTGCAGAGGCTGCAACTGCTTTA
GTGGAACCGGTGACAACTGGTGTGATTGGACAGGATGATGCATACAAGATTTCTGCAGATGAAAAACTTTATACTAAATGCTTTGATAATGACAAGAAGTCAGTTAAGGGAAATGAGGAATGTGTCAAAGTAGACACGTTGATTCAAAAAGAAGCAAAAGAAACAGGAGGTAGCAAGAAACCTGTGGTGTCTTCAGATTC
ATATCACTCCTTTATGAGGTTTTCTTCAGAACCTGCTAAATGGGTAGAGGAGAAGCAGATGGATCCATGGTTTGGAGATTCAATGTCCTATAAGCATATGGATAAATGGCAGATTGGAGATAAAGATGAGAGGAATGCACACGCTAAAATGTCTACTGAATCATCATTGACTGATAAAAAAATGGAAGAACAAAAGCTAC
AGAGCATGACTGGACCAGTGCTGCCTTCTCCAAAGAAGCAAGATGGTTCAAATTTAGCTTCAAGACAAGTCAATTCAATCAGCACACCTCCAATCAAGGCTTATGTTGCACAAAAAGGTGAGGCTGACCAATATGAATACAAGTCAAAGAGCATCAGGGTGAAGAAATCTTGTGCGACCCCAGCAAAGAAAAATAGCAGA
GGCCTTAAGAAAGATCATGGGCAGTCTGGCTCAGACAAGCTTAACCAAGGGCAATTAGCTAAGCAGTTGGCTGTTCGCAAGCATGATCAAGTTTCCCCCATAAGATCTGGCACTGAACCTTCAGCAGAAAAAGTTGCAGGTTCTTCAAAATTTAAGGTGAAGATAAATGGTACTGCAGCAATGAAATTGGATGGTGTGTC
ACAATCTACAGAGTTGCATTTAGAAAAAGCAAACAAGCTTAGACAAGTGTATGATGCTGCATTGGCAAAAGAAATAAAATTCAGAACTATGTCAAACGATTCTGACATTGCTACCCCATCTACATCTATGAAGCATCTTATAGCAGCTGCACAGGCTAAGCGAGAACAGGCACGTTCTGCAGCTCTGCCACATTCTGTTT
CAATTGAAGAAACTGATAATTCTATTCCTTTTATATCCAGTCCTTCACCAATCCGAGGGAGTAGTTCAGATCACAGTTCCCCACTCCAACATCACTTTGATGGTGAGGCACCTGAGGATACGAAGGATGCCATTGCCCATACAGAATCAAGAAGCCCCAGAGTTAATGTGCAGCAGTGGGGTCTGCCGAATACAATGGAT
CTGGAATCAAGTGAAGAAGGTAAAAGAAGCTCAGAGCGAAAATCGGTTGGAGGGACAATTAGTGGGGATACAGAAGCAGCAATTGCCAGGGATACTTTTGAGGGAATGCTTGAAACGCTGTCAAGGACGAAGGAAAGTATTGGCAGAGCATCTCGTCATGCTATTGACTGTGCAAAATATGGCCTTGCTGGTGAGgtaat
aatgaagatggtagtggggatgcccatctgtcccctgtatgctggtgccgctgatataattcggagacataccctcaatttccaaatctctggactatgaggaatggaggaaactcagtcccatcctgagctagccctaaatttttgcactgatagaagctagGTTGTTGAGCTTATTGTTAAAAGACTGGAAAATGAAA
CGAGTTTCCACCGGAGGATAGACTTGTTCTTTCTAGTGGATTCAATAACCCAATGTTCACACACCCAGAAAGGTATTGCTGGAGCCACATATCTTCCTGCTGTGCAAGCTGCTCTTCCACGATTGTTGGGTGCAGCTGCTCCCCAAGGAAGTATTGCACGTGAGAATCGTCGTCAGTGTCTTAAGGTTTTGAGGCTTTGG
CTGGAGCGAAGAATTCTTCCGGAACCTGTTCTGCACCGTTACATGAATGAGATTGGACCTTCAAATGATGACAGAGCTGGTGTTATCTCATCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGCTTGATGAATATGGCAGTAATACAACTTTTCAGTTGCCAGGTTTATT
GATGACACATATGTTTGAAGAGGAAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGGTTGATGAATATGGCAGTAATGCAACTTTTCAGTTGCCAGATTTCTTGATGGAGGAACCAAGTGCAAATGACTTGAAGAAGTGTGATGACAATTTACCCGTTGAAGCTGTTAAAGCACAAGAAGAGCCAAGAG
AGAGTTCCGTTGATCCTATGGAAAGGCATCGGCACATCTTGGAGGATGTTGATGGTGAGCTTGAAATGGAAGACATGGTTGATGAATATGGCAGTAATGCAACTTTTCAGTTGCCAGATTTCTTGATGACACATATTTTTGAAGATGACGAGGAACCAAGTGCAAATGACTTGAAGAAGTGTGATGACAATTTACCCGTT
GAAGCTGTTAAAGCACAAGAGTCTCCCCACCACCAGAATATGATTCAAGCTCCTGTAGAGATCATTATATGCCGCCAATGACAGCACAAGAGATGGCTCACTGTTCCTTACCTCCAGATCAGAGCAACCTTTGCCCTCAGCCTCCACTACCTAATGATCCACCTCCATTACCCAATGATCCACCTCCATCCCCTCCACCC
TTGCCTCCATCCCCCCCTCCACCACCACCCAGTTCTCCCCCACCTCCTCCACCTCCCTCTCCTCCCATTGTTTGTCCACCACCCTTACCCCAGTCATATACTACACCTTTAAATGACTCTCAACTACATCTTTTATCTGGAAATACTCAGCAGCCTCCTGGTCAGGTTGTTAATAATGCAGCAGTATTTGATTCTTATAA
TTCTAATGGATTTCCAGCATCTCAGATGCTTCCTGGCCAAAATATTGTATCTTTCAATTCTAGTAGGCCTTTCGATTTTTTACAGAGTAGCATGCCTGGGGTCCCTCAGAGTGCACCTCCTGTCCAACAGTTGCAAATAAGTAATACTAATGTCTCATATACTCAGCACTCATACTGCCCACCTCCCCCTACTCTGGCAC
CATCTAATCAGTTTTCCTATGTAAGGGCTGAAAGTCGACATCCCTTGCAACAAGCTTGGTTAGATTCTTCTCCATCTCCGATTCCTGAATGTGAGAAAATATCTGCTCAAGATGAACAACAGAGGTTTCTCCAGAGTGAAAGAAGTGTAAGACTGGAGGATCAGTTGTTGAACCAACAGGCAGGGGGGTGCAAAACATTG
TGTGCAAGTTCAACGTTTGGGCAAGAAGTCACCCCTGGAATGCCTTGGCCATCTGGAGGAACCCAATATTCTTGTGGGTTGCAGCTGCCAGCACAGAACCAGATGATCATAACATCTGGAGTTCCACAGCCAAGTATGGATATGGCATTTAACACTTACTCGGGTCAGGCTGCAGGGTTAACAGGCAGCTTGGTTGCAGC
ACCTACGAATCACGTTTTGATCCATATGTCTAGATCTGGTATTTCTTCTGCAAATTCTTGGAGGCATACGTGATGGACCATATGGGAAATGAAAGATGTCCTGATTTCGAGTGGAAGCAAATAAGCTGTGCAATGGGCAAGTTTAATCCTCAAAAGAGCCGGTGAGAGAAGATTCCTTATTCTGGAGAAGTCTGTAGATT
TGATGTATGTTGTTAACTTTCTTAGACTTTGGATATTGCCGGCAAATAGGTTGATATTGTTAACTGTATATACTGTAACTTGCTTCACTATCTGCATTTTGCAGATGCATATAAAATTGTGCTTCTCTCATTCTTTCTGATAGCAAGTTTCCCAAATCTCAATGAATGAGTCATATGTAACATGAATTGATTGAATCAGA
GATCGTAATTTCAGTCTTGTCTTGGCCTTCTGTTGGATTATATTCTTCTAATCAGAGCATATTGTACATCTCCCTTTGGGATACTCAATATACACAGTAAATATAAAATCTGTCTCTTCCAACGGGTTGCCTTCTGAAGGAAAGCAATTTTGGAATTAAGTGTCCACTACAATTTTCTTTGTAAATGATGACAATTTTGA
GTTTCATGACTTTGTATAGTCTCCAGAGCTGTTGCATCACACAAGAGGATGCATGCATATTTAGACTATATAGCCCAACATTCAATATTATGTGTGACTTCAGTGTTGATATTTATTGGGGTCTTAAAGGGATCCCATTAATTGCACTCCATTGTGATCTACTACTGTGCGAATCCCTATTGACTGTGGTCCAATCATAG
TGCATTTACTATAATTTTTTACAAATGAGAAGGGCGAAAATTGTCATTTCAGTCAACTAGTGTAAATGGGGCTAACTAGAGTAGTATGCTGATGGTTCAGTAGGCTGTATACGAATAAGTACATTTTAAGCAAGTTGGAGGAGTTCATCAATGTATCTCTTATTTTTCAAAAGGCAAGACTGGGAACCAAAAAAAATTGC
ATGTAGAGGAAAGTCAAGACTGGGAATCAAAACAAATTTGCATGTAAAGGAAGAGAAATTTGGAAGGCTATTCCTCGATGTTTTCTCTTACGAGTTTACAACAAGCCTTTTATTTTAATCTGTTTCTGGAGGACTAGTGAGGAATTGCCATCTATAAATGGAGTATATGATATTGACAGAGTTGTCGTTTATATAATTGT
TCTTAAACTTGTATATATATCCATAATATCGATAATTTTTCAATGTTGTAAATATGGTAGGAGATATATAATAGGTAGATTTGTATCCATATACAAACACACATCCAAGAATTTCAAACCCTCAAATTTTTTATTTAACATTATATGAAATGTCAAAAGTTTATACGCTCG
Intron 2 GTTTATGATG ... AAGTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.82 | 21 | 95 | 94 |
| A2 | 82.47 | 17 | 95 | 65 |
| A3 | 73.82 | 36 | 101 | 102 |
| A4 | 84.24 | 13 | 64 | 75 |
| A5 | 84.62 | 6 | 35 | 31 |
| A6 | 77 | 133 | 396.3 | 494 |
| A7 | 73.24 | 196 | 498 | 575 |
| A8 | 78.45 | 147 | 483 | 587 |
| A9 | 78.05 | 160 | 530 | 608 |
| A10 | 76.66 | 144 | 450 | 496 |
>TRINITY_DN44455_c2_g1_i7 from sample A6 / Example spliced isoformGGGCGCTGGAATCTCTGACACTACTAAGAAAAATAGGTGGATGCACCAGGTTTCAAGTTCAAATTATATGTACGGGATACTCTACCCTATTGGGTTAGTCAAACAACCAGAAAAAAATCTACCCAAATGGAGATCCAGGTAGCAGCTGGCCAAGAGTGTTTTCGAACATTAACCAGTTCATACTACAGAGGAGCACAGGG
TATTATTTTTGGAGAATGAGAGAGTTGTCACCAAGAAAGAAGGCATTGCTCTTGCAAGGCAATTGGGATGCTTGTTTCTTGAATGCAGTGCAAAGACACATGTCAATGTAGAAAGTTGCTTTGAAGAGCTTGTTCAAAAGATTTTAGACACTCCAAGCCTATTGCAAGATAGTACAACTGCAGCAAGGAAAAATATTTTC
AAGCAAACTCAGGAAAATGATGCAAATACTGGCGGCTGCTGTTGATAGTTTGAATGTCTCAAACGAACTAGCTCATGATTGAGCTGTTATTTAATTTGGAAACATACTAACAACTCTTGAATTATGAGGTTTTCTTATTCTTGATCAGCACTGATCAATCAAATGTTTCACATTTGTTGATTAAGATCTTGAAGCATCTT
GTATATATTGCAGTGTTTATATATAGGTACTCTCGAAGACACTTATTTGTTCATGTAGTTTGAATTCTGTTATAGGCAGCCTGCTGTGATTGCTAGAATGTCTGTCATCTTCTGCTTTTTATTTTATTCAGGCGAGATTGTGCCTTTCAGTCTAAAGTTCATATTACCAGTTCTGTCTATAATTCTGAGTTATTTACAAG
CTACAGTTGACTCTGTTACTCACAAAGCAGAAATACCAGATGGTTTGAATCCCAGTTACGTCTTTTCTGTGTTTTATTCTTCATTGAAGGCCCCATATTATTG
>TRINITY_DN44455_c2_g1_i5 from sample A6 / Example unspliced isoform:GGAGGGGAGAGATCTTAAATCTTGAGATATAAAAGGGTTTGGTCGATATTGAGCGGACCCTCAAAATTGTTAAATTCCATCGCAATCTTTGTTTGCAATTGATCTTCCATTCTTCATTCTTTCGCTTTCGATTAATTATTACTGCCAGAGTTTCAAAGGTCGAAACCTGCGGCCAGCGGATTCCATCGTGAGCCTATTCC
TCCACTGCCAAGGAGCCACGGAAATATTGCCACTAAAATATTAATCGATAATTTAACAGGGTTTTACGACATGGCACCGGCTAAAAGACGAGGAGGCAAAACAGCTGCCTGCAGACAATGGAGGCTTGGAGATCTTGTGCTTGCCAAGGTCAAGGGATTTCCGGCATGGCCCGCTAAGATAAGCAGGTCTGAAGATTGGG
AACAACTACCTAATCCTAGGAAGGTTTTTGTGTATTTCTTCAGTACAAATGAAATGCGTGGGCTTTAAGTTAAGGCCAATGACAATAGGAGGGAAAAGGTTGAAATTAACAATTTGGGATACAGCTGGCCAAGAGCGTTTTAGAACATTAACCAGTTCATACTACCGAGGAGCACAGGGTATTATTTTTgtttatgatgt
tacacgacgagaaacatttacaaatctgtcggaggtatgggcaaaggaggtggatctgtactcaaccaatcaagactgcataaagatgcttgttggaaataaagttgacagGGAGAATGAGAGAGTTGTCACCAAGAAAGAAGGCATTGCTCTTGCAAGGCAATTGGGATGCTTGTTTCTTGAATGCAGTGCAAAGACAC
ATGTCAATGTAGAAAGTTGCTTTGAAGAGCTTGTTCAAAAGATTTTAGACACTCCAAGCCTATTGCAAGATAGTACAACTGCAGCAAGGAAAAATATTTTCAAGCAAACTCAGGAAAATGATGCAAATACTGGCGGCTGCTGTTGATAGTTTGAATGTCTCAAACGAACTAGCTCATGATTGAGCTGTTATTTAATTTGG
AAACATACTAACAACTCTTGAATTATGAGGTTTTCTTATTCTTGATCAGCACTGATCAATCAAATGTTTCACATTTGTTGATTAAGATCTTGAAGCATCTTGTATATATTGCAGTGTTTATATATAGGTACTCTCGAAGACACTTATTTGTTCATGTAGTTTGAATTCTGTTATAGGCAGCCTGCTGTGATTGCTAGAAT
GTCTGTCATCTTCTGCTTTTTATTTTATTCAGGCGAGATTGTGCCTTTCAGTCTAAAGTTCATATTACCAGTTCTGTCTATAATTCTGAGTTATTTACAAGCTACAGTTGACTCTGTTACTCACAAAGCAGAAATACCAGATGGTTTGAATCCCAGTTACGTCTTTTCTGTGTTTTATTCTTCATTGAAGGCCCCATATT
ATTG
Intron 3 GCAACTTTTC ... CAAGAGAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.35 | 27 | 189 | 102 |
| A2 | 94.32 | 5 | 92 | 74 |
| A3 | 89.03 | 17 | 167 | 109 |
| A4 | 87.07 | 19 | 153 | 103 |
| A5 | 91.03 | 7 | 83 | 59 |
| A6 | 83.33 | 60 | 347 | 253 |
| A7 | 84.26 | 99 | 680 | 380 |
| A8 | 82.29 | 79 | 458 | 276 |
| A9 | 84.33 | 77 | 505 | 324 |
| A10 | 86.15 | 57 | 481 | 228 |
>TRINITY_DN40371_c0_g2_i2 from sample A9 / Example spliced isoformTTCTGCACCGTTACATGGATGACATTGGATCTTCAAATGATGATAGAGCTGGTGTTATCTCACCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGATGGAAATGGAAGGGATGGTTGATGAATATGGCAGTAATACAACTTTTCAGTTTCCAGGTTTCTTGATGACACATATACTTGAAGATGACGAG
GAACTGAGTGCAAATGACTTGAAGAGGGATGATGGCAGTTTAACTGTTGAAGCTATTAAAGCACAAGAAGAGCCAAGAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGGTTGATGAATATGGCAGTAATCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGCTGGTTGATGAATATGGCAGTAATA
CAACTTTTCAGTTTCCAGGTTTCTCGATGACACATATATTTGAAGATGACGAGGAACCAAGTGCAAATGACTTGGATAAGGATGATGGCAGTTTATCTGTTGAAGCTGTTAAAGCACAAGAAGAGCCAAGAGAGAGCTCTGTTGATCCTATGGAAAGAGGAGGATGTTGATGGTGAACTTGGAAAGAGGAGGATGTTGAT
GATGAACTTGAAATGGAAGATGTCTCCCCACCACCAGAATATGATTCAAGCTCCTGTAGAGATCATTATATGCCGCCAATGACAGCACAAGAGATGGCTCACTGTTCCTTACCTCCAGATCAGAGCAACCTTTGCCCTCAGCCTCCACTACCTAATGATCCACCTCCATTACCCAATGATCCACCTCCATCCCCTCCACC
CTTGCCTCCATCCCCCCCTCCACCACCACCCAGTTCTCCCCCACCTCCTCCACCTCCCTCTCCTCCCATTGTTTGTCCACCACCCTTACCCCAGTCATATACTACACCTTTAAATGACTCTCAACTACATCTTTTATCTGGAAATACTCAGCAGCCTCCTGGTCAGGTTGTTAATAATGCAGCAGTATTTGATTCTTATA
ATTCTAATGGATTTCCAGCATCTCAGATGCTTCCTGGCCAAAATATTGTATCTTTCAATTCTAGTAGGCCTTTCGATTTTTTACAGAGTAGCATGCCTGGGGTCCCTCAGAGTGCACCTCCTGTCCAACAGTTGCAAATAAGTAATACTAATGTCTCATATACTCAGCACTCATACTGCCCACCTCCCCCTACTCTGGCA
CCATCTAATCAGTTTTCCTATGTAAGGGCTGAAAGTCGACATCCCTTGCAACAAGCTTGGTTAGATTCTTCTCCATCTCCGATTCCTGAATGTGAGAAAATATCTGCTCAAGATGAACAACAGAGGTTTCTCCAGAGTGAAAGAAGTGTAAGACTGGAGGATCAGTTGTTGAACCAACAGGCAGGGGGGTGCAAAACATT
GTGTGCAAGTTCAACGTTTGGGCAAGAAGTCACCCCTGGAATGCCTTGGCCATCTGGAGGAACCCAATATTCTTGTGGGTTGCAGCTGCCAGCACAGAACCAGATGATCATAACATCTGGAGTTCCACAGCCAAGTATGGATATGGCATTTAACACTTACTCGGGTCAGGCTGCAGGGTTAACAGGCAGCTTGGTTGCAG
CACCTACGAATCACGTTTTGATCCATATGTCTAGATCTGGTATTTCTTCTGCAAATTCTTGGAGGCATACGTGATGGACCATATGGGAAATGAAAGATGTCCTGATTTCGAGTGGAAGCAAATAAGCTGTGCAATGGGCAAGTTTAATCCTCAAAAGAGCCGG
>TRINITY_DN40371_c0_g2_i4 from sample A9 / Example unspliced isoform:TTCTGCACCGTTACATGGATGACATTGGATCTTCAAATGATGATAGAGCTGGTGTTATCTCACCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGATGGAAATGGAAGGGATGGTTGATGAATATGGCAGTAATACAACTTTTCAGTTTCCAGGTTTCTCGATATGATGACACATATACTTGAAGATG
ACGAGGAACTGAGTGCAAATGACTTGAAGAGGGATGATGGCAGTTTAACTGTTGAAGCTATTAAAGCACAAGAAGAGCCAAGAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGGTTGATGAATATGGCAGTAATgcaacttttcagttgccagatttcttgatgacacatatatttgaagatgacgag
gaaccaagtgcaaatgacttgaataaggatgatgacagtttacctgttgaagctgttaaagcacaagaagagccaagagagagCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGCTGGTTGATGAATATGGCAGTAATACAACTTTTCAGTTTCCAGGTTTCTCGATGACACATATATTTGAAGATGACGAGGAACC
AAGTGCAAATGACTTGGATAAGGATGATGGCAGTTTATCTGTTGAAGCTGTTAAAGCACAAGAAGAGCCAAGAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGCCTATGGAAAGAGGAGGATGTTGATGGTGAACTTGGAAAGAGGAGGATGTTGATGATGAACTTGAAATGGAAGATGTCTCCCCACCAC
CAGAATATGATTCAAGCTCCTGTAGAGATCATTATATGCCGCCAATGACAGCACAAGAGATGGCTCACTGTTCCTTACCTCCAGATCAGAGCAACCTTTGCCCTCAGCCTCCACTACCTAATGATCCACCTCCATTACCCAATGATCCACCTCCATCCCCTCCACCCTTGCCTCCATCCCCCCCTCCACCACCACCCAGT
TCTCCCCCACCTCCTCCACCTCCCTCTCCTCCCATTGTTTGTCCACCACCCTTACCCCAGTCATATACTACACCTTTAAATGACTCTCAACTACATCTTTTATCTGGAAATACTCAGCAGCCTCCTGGTCAGGTTGTTAATAATGCAGCAGTATTTGATTCTTATAATTCTAATGGATTTCCAGCATCTCAGATGCTTCC
TGGCCAAAATATTGTATCTTTCAATTCTAGTAGGCCTTTCGATTTTTTACAGAGTAGCATGCCTGGGGTCCCTCAGAGTGCACCTCCTGTCCAACAGTTGCAAATAAGTAATACTAATGTCTCATATACTCAGCACTCATACTGCCCACCTCCCCCTACTCTGGCACCATCTAATCAGTTTTCCTATGTAAGGGCTGAAA
GTCGACATCCCTTGCAACAAGCTTGGTTAGATTCTTCTCCATCTCCGATTCCTGAATGTGAGAAAATATCTGCTCAAGATGAACAACAGAGGTTTCTCCAGAGTGAAAGAAGTGTAAGACTGGAGGATCAGTTGTTGAACCAACAGGCAGGGGGGTGCAAAACATTGTGTGCAAGTTCAACGTTTGGGCAAGAAGTCACC
CCTGGAATGCCTTGGCCATCTGGAGGAACCCAATATTCTTGTGGGTTGCAGCTGCCAGCACAGAACCAGATGATCATAACATCTGGAGTTCCACAGCCAAGTATGGATATGGCATTTAACACTTACTCGGGTCAGGCTGCAGGGTTAACAGGCAGCTTGGTTGCAGCACCTACGAATCACGTTTTGATCCATATGTCTAG
ATCTGGTATTTCTTCTGCAAATTCTTGGAGGCATACGTGATGGACCATATGGGAAATGAAAGATGTCCTGATTTCGAGTGGAAGCAAATAAGCTGTGCAATGGGCAAGTTTAATCCTCAAAAGAGCCGG
Intron 4 GTATGCAATT ... GAACCATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.71 | 40 | 19 | 29 |
| A2 | 57.58 | 25.3 | 30 | 27.7 |
| A3 | 45.29 | 26 | 11 | 19.7 |
| A4 | 50.75 | 24 | 19 | 21.3 |
| A5 | 33.29 | 15 | 6 | 7.3 |
| A6 | 53.69 | 18.3 | 17 | 18.7 |
| A7 | 56.02 | 53.7 | 30 | 77.3 |
| A8 | 52.64 | 25 | 18 | 28.7 |
| A9 | 53.45 | 42.7 | 33 | 52 |
| A10 | 50.39 | 52 | 45 | 44.3 |
>TRINITY_DN120206_c1_g1_i7 from sample A3 / Example spliced isoformGCAAAATCCTCAATCTACTAAACAACATCGGCTGCAACGAGATTTTGGGTTTTGGCGCAAAGGCTAAAGGCTGAGTGGAAGAAGTCTTAAGATGCTAATTCTATATTTTTATGAAAATATTGCCTATCCTCTGTTCTGACCGTGATCCAAATTTTGAGGGCTCAAACCCTGTTGCAGAGTGAATTCAACGACCGACATAG
TGGGATTTTTTTTATTGCAAGCCATTGTTAAGGGTTAAATTCTTTTAAACTCTCCACATGCTTTTAAATTTTAGCGAGCTTTACGTCTGGCCAGCTTCGTGGATCATTTGGAGTAGAACCCTTATTCGCAAAAATAATCGATCTCACGACCTTTGAAAAGCTTTTACGCTTGGAAAATTTCAGCTTGTTAAGTAGAAGGG
AACAATGCAATCATCACTCTTAATATAGTAATGGAATGTATTTAGAGTCTGGCTGAACTTAAATTGACCTCCCTCCATCAAATGAAACTCACTATTTGAGGATGAGAAAAGGGGCATCCCATACTGTGCCGTGGGTATCCGTTCATTGGTGACCTGCGTTGAAGTGGAACCTACAGCCTCTGCACAGAGGAAATATGGGG
TGGTGTACTGCAAAGCGACATGACACCACGAATCTGTATTCGTAATTCTTTTCGATACTTTTCGTAAACAAAACAATTCCCATTGCCTTGTATTTGCTGAGATGGAGTATGGCCATCTTTGAGTTTCTTAAGGTTTTGAGGCTTTGGCTTGAGCGGAGAATTCTTCGGGAACCTGTTCTGCACCGTTACATGAATGAGAT
TGGACCTTCAAATGATGACAGAGCTGGTGTTATCTCATCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGATGGAAATGGAAGGGATGGTTGATGAATATGGCAGTAATTCAACTTTTCAGTTTCCAGGTTTCT
>TRINITY_DN120206_c1_g1_i10 from sample A3 / Example unspliced isoform:GCAAAATCCTCAATCTACTAAACAACATCGGCTGCAACGAGATTTTGGGTTTTGGCGCAAAGGCTAAAGGCTGAGTGGAAGAAGTCTTAAGATGCTAATTCTATATTTTTATGAAAATATTGCCTATCCTCTGTTCTGACCGTGATCCAAATTTTGAGGGCTCAAACCCTGTTGCAGAGTGAATTCAACGACCGACATAG
TGGGATTTTTTTTATTGCAAGCCATTGTTAAGGGTTAAATTCTTTTAAACTCTCCACATGCTTTTAAATTTTAGCGAGCTTTACGTCTGGCCAGCTTCGTGGATCATTTGGAGTAGAACCCTTATTCGCAAAAATAATCGATCTCACGACCTTTGAAAAGCTTTTACGCTTGGAAAATTTCAGCTTGTTAAGTAGAAGGG
AACAATGCAATCATCACTCTTAATATAGTAATGGAATGTATTTAGAGTCTGGCTGAACTTAAATTGACCTCCCTCCATCAAATGAAACTCACTATTTGAGGATGAGAAAAGGGGCATCCCATACTGTGCCGTGGGTATCCGTTCATTGGTGACCTGCGTTGAAGTGGAACCTACAGCCTCTGCACAGAGGAAATATGGGG
TGGTGTACTGCAAAGCGACATGACACCACGAATCTGTATTCGTAATTCTTTTCGATACTTTTCGTAAACAAAACAATTCCCATTGCCTTGTATTTGCTGAGATGGAGTATGGCCATCTTTGAGgtatgcaattccaacattgtggtctgtaattgctcccttttgattactagtccacagtcgaaattatatgtatgctt
atctccattttgggtaatgttgccattgaccaacgcaatgttgttctttattaatgttggaaccataagTTTCTTAAGGTTTTGAGGCTTTGGTTTGAGCGGAAAATTCTTCGGGAACCTCTTCTGCACCGTTACATGGATGACATTGGATCTTCAAATGATGATAGAGCTGGTGTTATCTCACCAAGGCGTCCGTCTAG
AGTGCAGCGTGCTGTTGATGACCCATTGATGGAAATGGAAGGGATGGTTGATGAATATGGCAGTAATTCAACTTTTCAGTTTCCAGGTTTCTTGATGACACATATACTTGAAGATGACGAGGAACTGAGTGCAAATGACTTGAAGAGGGATGATGGCAGTTTAACTGTTGAAGCTATTAAAGCACAAGAAGAGCCAAGAG
AGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGCGTTGATGAATATGGCAGTAATGCAACTTTTCAGTTGCCAGATTTCTTTTGATGAATATGGCAGTAATACAACTTTTCAGTTGATGACACATATATTTGAAGATGACGAGGAACCAAGTGCAAATGACTTGAATAAGGATGATGACAGTTTACCTGTTG
AAGCTGTTAAAGCACAAGAAGAGCCAAGAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGG
Intron 5 GTAAAAATAA ... TGTCATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.62 | 8 | 2 | 44 |
| A2 | 77.78 | 12 | 15 | 42 |
| A3 | 78.57 | 15 | 4 | 55 |
| A4 | 75.44 | 14 | 6 | 43 |
| A5 | 75 | 7 | 8 | 21 |
| A6 | 77.49 | 43 | 26 | 148 |
| A7 | 76.11 | 59 | 14 | 188 |
| A8 | 75.9 | 47 | 18 | 148 |
| A9 | 75.8 | 76 | 25 | 238 |
| A10 | 74.8 | 63 | 22 | 187 |
>TRINITY_DN44455_c2_g1_i11 from sample A6 / Example spliced isoformATAACACTTGCGATACATTTTGGAAGAAGTGAAGTTGTATTTTACAGCCGAAAGCGAAGGGTCAAAGCTTTGTCTGTAGTATCTCTCCGACCAACATTGAAAAGATACAGTATTAACAGTATTATGATGACCACCCAAGTAAATTTACACGACTATTAATCTTAGCAGATCTTTCCTTCACCAACGGTTTGGCAGATCTA
GGGATCGAGTCTCTACAATTAGCTTTTGAATGGTTTTAAGAGGCGTGGCGTCGAGCTGAGTATTTCCGGAAAGGTGGACAAACAGGGTTGCAGTAATTGGAAGTCTTGAATCTCATGGCTTCCTCCACAAGTCAAGGGGACTTCGACCATGTGTTCAAATTGTTAATGATTGGAGATTCAGGAGTTGGCAAGAGCAGTCT
TCTTTTGCGGTTTACATCAGATTCCTTCGATGATCTCTCCCCTACAATCGGCGTGGACTTTAAGTTAAAGCTGATGACAATAGGAGGGAAAAGGTTGAAATTAACAATTTGGGATACAGCTGGCCAAGAGCGTTTTAGAACATTAACCAGTTCATACTACCGAGGAGCACAGGGTATTATTTTTGTTTATGATGTTACAC
GACGAGAAACATTTACAAATCTGTCGGAGGTATGGGCAAAGGAGGTGGATCTGTACTCAACCAATCAAGACTGCATAAAGATGCTTGTTGGAAATAAAGTTGACAGGGAGAATGAGAGAGTTGTCACCAAGAAAGAAGGCATTGCTCTTGCAAGGCAATTGGGATGCTTGTTTCTTGAATGCAGTGCAAAGACACATGTC
AATGTAGAAAGTTGCTTTGAAGAGCTTGTTCAAAAGATTTTAGACACTCCAAGCCTATTGCAAGATAGTACAACTGCAGCAAGGAAAAATATTTTCAAGCAAACTCAGGAAAATGATGCAAATACTGGCGGCTGCTGTTGATAGTTTGAATGTCTCAAACGAACTAGCTCATGATTGAGCTGTTATTTAATTTGGAAACA
TACTAACAACTCTTGAATTATGAGGTTTTCTTATTCTTGATCAGCACTGATCAATCAAATGTTTCACATTTGTTGATTAAGATCTTGAAGCATCTTGTATATATTGCAGTGTTTATATATAGGTACTCTCGAAGACACTTATTTGTTCATGTAGTTTGAATTCTGTTATAGGCAGCCTGCTGTGATTGCTAGAATGTCTG
TCATCTTCTGCTTTTTATTTTATTCAGGCGAGATTGTGCCTTTCAGTCTAAAGTTCATATTACCAGTTCTGTCTATAATTCTGAGTTATTTACAAGCTACAGTTGACTCTGTTACTCACAAAGCAGAAATACCAGATGGTTTGAATCCCAGTTACGTCTTTTCTGTGTTTTATTCTTCATTGAAGGCCCCATATTATTG
>TRINITY_DN44455_c2_g1_i4 from sample A6 / Example unspliced isoform:ATAACACTTGCGATACATTTTGGAAGAAGTGAAGTTGTATTTTACAGCCGAAAGCGAAGGGTCAAAGgtaaaaataaaaattccctcgcaccaaatctcagttcagcacgcgaattcacgtttaatttttacttgcatattttcctatcgatattctgatctgggagcgtctgtgcttcggatttctaattgtcatccag
CTTTGTCTGTAGTATCTCTCCGACCAACATTGAAAAGATACAGTATTAACAGTATTATGATGACCACCCAAGTAAATTTACACGACTATTAATCTTAGCAGATCTTTCCTTCACCAACGGTTTGGCAGATCTAGGGATCGAGTCTCTACAATTAGCTTTTGAATGGTTTTAAGAGGCGTGGCGTCGAGCTGAGTATTTCC
GGAAAGGTGGACAAACAGGGTTGCAGTAATTGGAAGTCTTGAATCTCATGGCTTCCTCCACAAGTCAAGGGGACTTCGACCATGTGTTCAAATTGTTAATGATTGGAGATTCAGGAGTTGGCAAGAGCAGTCTTCTTTTGCGGTTTACATCAGATTCCTTCGATGATCTCTCCCCTACAATCGGCGTGGACTTTAAGTTA
AAGCTGATGACAATAGGAGGGAAAAGGTTGAAATTAACAATTTGGGATACAGCTGGCCAAGAGCGTTTTAGAACATTAACCAGTTCATACTACCGAGGAGCACAGGGTATTATTTTTGTTTATGATGTTACACGACGAGAAACATTTACAAATCTGTCGGAGGTATGGGCAAAGGAGGTGGATCTGTACTCAACCAATCA
AGACTGCATAAAGATGCTTGTTGGAAATAAAGTTGACAGGGAGAATGAGAGAGTTGTCACCAAGAAAGAAGGCATTGCTCTTGCAAGGCAATTGGGATGCTTGTTTCTTGAATGCAGTGCAAAGACACATGTCAATGTAGAAAGTTGCTTTGAAGAGCTTGTTCAAAAGATTTTAGACACTCCAAGCCTATTGCAAGATA
GTACAACTGCAGCAAGGAAAAATATTTTCAAGCAAACTCAGGAAAATGATGCAAATACTGGCGGCTGCTGTTGATAGTTTGAATGTCTCAAACGAACTAGCTCATGATTGAGCTGTTATTTAATTTGGAAACATACTAACAACTCTTGAATTATGAGGTTTTCTTATTCTTGATCAGCACTGATCAATCAAATGTTTCAC
ATTTGTTGATTAAGATCTTGAAGCATCTTGTATATATTGCAGTGTTTATATATAGGTACTCTCGAAGACACTTATTTGTTCATGTAGTTTGAATTCTGTTATAGGCAGCCTGCTGTGATTGCTAGAATGTCTGTCATCTTCTGCTTTTTATTTTATTCAGGCGAGATTGTGCCTTTCAGTCTAAAGTTCATATTACCAGT
TCTGTCTATAATTCTGAGTTATTTACAAGCTACAGTTGACTCTGTTACTCACAAAGCAGAAATACCAGATGGTTTGAATCCCAGTTACGTCTTTTCTGTGTTTTATTCTTCATTGAAGGCCCCATATTATTG
Intron 6 ATAAAATAAC ... AGTAAGAAAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 6 | 6 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 50 | 7 | 10 | 4 |
| A4 | 100 | 0 | 0 | 4 |
| A5 | 100 | 0 | 5 | 2 |
| A6 | 100 | 0 | 1 | 0 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN120206_c1_g1_i8 from sample A3 / Example spliced isoformGGAAGGCGTATGTGGTCGGTCGGGAGGGGATTAAACTCCCTATTGGTTACATAAGACACGCCAAAGAACAAAAGATTATATATCAATGGGAGGGGAGAGATCTTAAATCTTGAGATATAAAAGGGTTTGGTCGATATTGAGCGGACCCTCAAAATTGTTAAATTCCATCGCAATCTTCGCTTGCAATTGATCTTCCATTC
TTCATTCTTTCGCTTTCGATTAATTATTACTGCCAGAGTTTCAAAGGTCGAAACCTGCGGCCAGCGGATTCCATCGTGAGCCTATTCCTCCACTGCCAAGGAGCCACGGAAATATTGCCACTAAAATATTAATCGATAATTTAACAGGGTTTTACGACATGGCACCGGCTAAAAGACGAGGAGGCAAAACAGCTGCCTGC
AGACAATGGAGGCTTGGAGATCTTGTGCTCGCCAAGGTCAAGGGATTTCCGGCATGGCCCGCTAAGATAAGCAGGCCTGAAGATTGGGAACAACTACCTGATCCTCGGAAGGTTTTTGTGTATTTCTTTGGTACAGATGAAATTGGTTTCTGTGCTCCTACTGACGTTCAGGCATTTACCTCTGAGTTGAAAAATAAGTT
ATCAGCCAAATGTCGAGGGAAGGCTGAAACTGACTTTACTCGGGCAGTGAAAGAGATATGTGAGGAGTATGATGATAAAGGTATAGAGGAAGAGGACTTTATCCCAGAGATTGATGATGGGAAATCCAGATCATGTATTGATGAAAGCTCAAAGGATTCCGCAGAGAAAGTACAGTTCACAAAAAATGATAAAATCCAAG
AAGCAACTGAGGCAGAGGACATGTTGGAAATCCATAAAGATACATCTATTCAAATGCATTATGAGACTGTCATCAAGAAACATGATATTAAGAGGGACGTACATAGGCAGGATAACTGGCAAAAGACACGTGGGGTTGGTGAGAATAAGAAAAAGCCTGCTACCTCTCTGATCTCGTCTGATAAGAAAGATAGGAAGATG
CTCAATGCAGTCCAGGTTGGGCTTAAAAAGCACAGTTCATTATCAACATCTAAATCTGACAACATGAGGTCCATGCTAAAGATAAAGAAGCCTACAAGCCATTTTGAGGAAAGATAAAGAAGCCTACAAGCCATTTTGAGGACCATTTGAGGTCTGATGTTTCTGGTGCAGTGCCTACAAGCCTTTTTGAGAACCATTTG
AGGTCTGATGTTTCTGGTGCAGTATCTACAACAGCTGAGCCAGAGTTGAAGACAATAAAGAGAGATTTTAAAAGGTCATCAGAGAGTGAAAGCAATATTCATAATGACGGAGACAACATTATGCTTTTTTCTTCTTATCTTGAAGAAAATGGGGCACATTCACCAGATACAGGCATTATTTCAGAGCAGACCACGAGTGA
AAAGCAGTTTGGTCAGAAAAGGCAAAGCATGGAAAAAGAAATTAGAGGTTCTCGATTAGTGCCTGAAAGTGAGCTCCTAGATCGTAGAAAAACAGTGACAGATAACAGTGTTAGCAATTTTGAATCTTTTAAACATGGAAACACTGAAGACAGCATTCAGGTATCAAACTGTAAAGAAAATTTGAAGGGTGAAAAAGATT
ATGAAAATATTCATGAAAATTCTGTTCCTAATGACAAAGATCATGTGCTTTCTACATTTATGACTAGAGAGAATGAAGTTAGGGTAGTTCCAAATACTTCTTTTCATCAGAATTCCATTCTGAAGAAGAAAAGAAAGCTCTTGAAGAAACATAATTCCGGGTTATCAATTCTACCAGAGAGATCTGACGATCAAAGAAAG
ATAAATATCTGCACGGAAGAAGAAAATGTTCTTGAATTATTATCAGGAGTAGATCATCGAAAGAAAAGGACACAGATTAAGGCAAGGAAACATAAACTTAACTTTGATGAACATTTGCATTTGGTAAAAAGGGCAAGAAATGAAGCTGAAGATGAAACCAATCAAATTGTACAAGGCTTGAATAAAGGAGGTGTAATAAG
TGCCATGGACAATAATGGAGAAAATATGGCAGCAGATAATGCTTTTGTGTTAAATGAATGCCATTTGAGAACTAATAATATCATAAGTTCTAACAGTCTTGAAACTGAAGGAGATTTGTCGCATGGGCAGACGTCTTCAATTCTCATGGAAAGGCCTATGTGTTTGCCACCAAAGGCTGATAAATATCGTTTGAGAAGTA
GCCTACCGAGTGATGAAGCTGCCCTGCCTCCCTCTAAACGACGTCACCGGGCTCAGGAAGCTATGTCTGCATGTGTTGCAGAGGCTGCAACTGCTTTAGTGGAACCGGTGACAACTGGTGTGATTGGACAGGATGATGCATACAAGATTTCTGCAGATGAAAAACTTTATACTAAATGCTTTGATAATGACAAGAAGTCA
GTTAAGGGAAATGAGGAATGTGTCAAAGTAGACACGTTGATTCAAAAAGAAGCAAAAGAAACAGGAGGTAGCAAGAAACCTGTGGTGTCTTCAGATTCATATCACTCCTTTATGAGGTTTTCTTCAGAACCTGCTAAATGGGTAGAGGAGAAGCAGATGGATCCATGGTTTGGAGATTCAATGTCCTATAAGCATATGGA
TAAATGGCAGATTGGAGATAAAGATGAGAGGAATGCACACGCTAAAATGTCTACTGAATCATCATTGACTGATAAAAAAATGGAAGAACAAAAGCTACAGAGCATGACTGGACCAGTGCTGCCTTCTCCAAAGAAGCAAGATGGTTCAAATTTAGCTTCAAGACAAGTCAATTCAATCAGCACACCTCCAATCAAGGCTT
ATGTTGCACAAAAAGGTGAGGCTGACCAATATGAATACAAGTCAAAGAGCATCAGGGTGAAGAAATCTTGTGCGACCCCAGCAAAGAAAAATAGCAGAGGCCTTAAGAAAGATCATGGGCAGTCTGGCTCAGACAAGCTTAACCAAGGGCAATTAGCTAAGCAGTTGGCTGTTCGCAAGCATGATCAAGTTTCCCCCATA
AGATCTGGCACTGAACCTTCAGCAGAAAAAGTTGCAGGTTCTTCAAAATTTAAGGTGAAGATAAATGGTACTGCAGCAATGAAATTGGATGGTGTGTCACAATCTACAGAGTTGCATTTAGAAAAAGCAAACAAGCTTAGACAAGTGTATGATGCTGCATTGGCAAAAGAAATAAAATTCAGAACTATGTCAAACGATTC
TGACATTGCTACCCCATCTACATCTATGAAGCATCTTATAGCAGCTGCACAGGCTAAGCGAGAACAGGCACGTTCTGCAGCTCTGCCACATTCTGTTTCAATTGAAGAAACTGATAATTCTATTCCTTTTATATCCAGTCCTTCACCAATCCGAGGGAGTAGTTCAGATCACAGTTCCCCACTCCAACATCACTTTGATG
GTGAGGCACCTGAGGATACGAAGGATGCCATTGCCCATACAGAATCAAGAAGCCCCAGAGTTAATGTGCAGCAGTGGGGTCTGCCGAATACAATGGATCTGGAATCAAGTGAAGAAGGTAAAAGAAGCTCAGAGCGAAAATCGGTTGGAGGGACAATTAGTGGGGATACAGAAGCAGCAATTGCCAGGGATACTTTTGAG
GGAATGCTTGAAACGCTGTCAAGGACGAAGGAAAGTATTGGCAGAGCATCTCGTCATGCTATTGACTGTGCAAAATATGGCCTTGCTGGTGAGGTTGTTGAGCTTATTGTTAAAAGACTGGAAAATGAAACGAGTTTCCACCGGAGGATAGACTTGTTCTTTCTAGTGGATTCAATAACCCAATGTTCACACACCCAGAA
AGGTATTGCTGGAGCCACATATCTTCCTGCTGTGCAAGCTGCTCTTCCACGATTGTTGGGTGCAGCTGCTCCCCAAGGAAGTATTGCACGTGAGAATCGTCGTCAGTTTCTTAAGGTTTTGAGGCTTTGGCTGGAGCGAAGAATTCTTCCGGAACCTGTTCTGCACCGTTACATGAATGAGATTGGACCTTCAAATGATG
ACAGAGCTGGTGTTATCTCATCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGATTAAAGCACAAGAAGAGCCAAGAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGCGTTGATGAATATGGCAGTAATGCAACTTTTCAGTTGCCAGATTTCTTTTGATGAATATGGCAGTAATA
CAACTTTTCAGTTGCCAGGTTTATTGATGACACATATGTTTGAAGAGGAAGATGACACATATATTTGAAGATGACGAGGAACCAAGTGCAAATGACTTGAAGAAGTGTGATGACAATTTACCCGTTGAAGCTGTTAAAGCACAAGAAGAGCCAAGAGAGAGTTCCGTTGATCCTATGGAAAGGCATCGGCACATCTTGGA
GGATGTTGATGGTGAGCTTGAAATGGAAGACGTCTCCCCACCACCAGAATATGATTCAAGCTCCTGTAGAGATCATTATATGCCGCCAATGACAGCACAAGAGATGGCTCACTGTTCCTTACCTCCAGATCAGAGCAACCTTTGCCCTCAGCCTCCACTACCTAATGATCCACCTCCATTACCCAATGATCCACCTCCAT
CCCCTCCACCCTTGCCTCCATCCCCCCCTCCACCACCACCCAGTTCTCCCCCACCTCCTCCACCTCCCTCTCCTCCCATTGTTTGTCCACCACCCTTACCCCAGTCATATACTACACCTTTAAATGACTCTCAACTACATCTTTTATCTGGAAATACTCAGCAGCCTCCTGGTCAGGTTGTTAATAATGCAGCAGTATTT
GATTCTTATAATTCTAATGGATTTCCAGCATCTCAGATGCTTCCTGGCCAAAATATTGTATCTTTCAATTCTAGTAGGCCTTTCGATTTTTTACAGAGTAGCATGCCTGGGGTCCCTCAGAGTGCACCTCCTGTCCAACAGTTGCAAATAAGTAATACTAATGTCTCATATACTCAGCACTCATACTGCCCACCTCCCCC
TACTCTGGCACCATCTAATCAGTTTTCCTATGTAAGGGCTGAAAGTCGACATCCCTTGCAACAAGCTTGGTTAGATTCTTCTCCATCTCCGATTCCTGAATGTGAGAAAATATCTGCTCAAGATGAACAACAGAGGTTTCTCCAGAGTGAAAGAAGTGTAAGACTGGAGGATCAGTTGTTGAACCAACAGGCAGGGGGGT
GCAAAACATTGTGTGCAAGTTCAACGTTTGGGCAAGAAGTCACCCCTGGAATGCCTTGGCCATCTGGAGGAACCCAATATTCTTGTGGGTTGCAGCTGCCAGCACAGAACCAGATGATCATAACATCTGGAGTTCCACAGCCAAGTATGGATATGGCATTTAACACTTACTCGGGTCAGGCTGCAGGGTTAACAGGCAGC
TTGGTTGCAGCACCTACGAATCACGTTTTGATCCATATGTCTAGATCTGGTATTTCTTCTGCAAATTCTTGGAGGCATACGTGATGGACCATATGGGAAATGAAAGATGTCCTGATTTCGAGTGGAAGCAAATAAGCTGTGCAATGGGCAAGTTTAATCCTCAAAAGAGCCGGTGAGAGAAGATTCCTTATTCTGGAGAA
GTCTGTAGATTTGATGTATGTTGTTAACTTTCTTAGACTTTGGATATTGCCGGCAAATAGGTTGATATTGTTAACTGTATATACTGTAACTTGCTTCACTATCTGCATTTTGCAGATGCATATAAAATTGTGCTTCTCTCATTCTTTCTGATAGCAAGTTTCCCAAATCTCAATGAATGAGTCATATGTAACATGAATTG
ATTGAATCAGAGATCGTAATTTCAGTCTTGTCTTGGCCTTCTGTTGGATTATATTCTTCTAATCAGAGCATATTGTACATCTCCCTTTGGGATACTCAATATACACAGTAAATATAAAATCTGTCTCTTCCAACGGGTTGCCTTCTGAAGGAAAGCAATTTTGGAATTAAGTGTCCACTACAATTTTCTTTGTAAATGAC
AATTTTGAGTTTCATGACTTTGTATAGTCTCCAGAGCTGTTGCATCACACAAGAGGATGCATGCATATTTAGACTATATAGCCCAACATTCAATATTATGTGTGACTTCAGTGTTGATATTTATTGGGGTCTTAAAGGGATCCCATTAATTGCACTCCATTGTGATCTACTACTGTGCGAATCCCTATTGACTGTGGTCC
AATCATAGTGCATTTACTATAATTTTTTACAAATGAGAAGGGCGAAAATTGTCATTTCAGTCAACTAGTGTAAATGGGGCTAACTAGAGTAGTATGCTGATGGTTCAGTAGGCTGTATACGAATAAGTACATTTTAAACAACATAGCAAGAACCAAAAAAGAGCATCAAAGGGAGAGGATTTGTTCTGCAGGTTTGCCTG
CCATTGCTTTGACCTTTATCAAAACCCCCATGATTCAGCTGAATTCATTCTTTTGAGAGAGCATCCGCTTGGCTTTTAATTCTCTGAAAATATGGCTAATTGTAAAGGAATTAAAATAACCAGCAGCCTCTTTAAGATGTTCCCCTAGAGCCCACAGAGAAGTATTAAGTATTTGGTGGTCATCCTTCATCCACTTAACA
ACCAAGGAAGAATCCCTGAAGAACTTTATATATAAGTTGAATAATTTTGCATTTCAATTATAAGATCAGTAAACACTGACTATTTTCAAAGCTTAGGTTGGTTAAAAATGTTTCCAACAACAACAAACGAGGAGACAAAAG
>TRINITY_DN120206_c1_g1_i3 from sample A3 / Example unspliced isoform:GGAAGGCGTATGTGGTCGGTCGGGAGGGGATTAAACTCCCTATTGGTTACATAAGACACGCCAAAGAACAAAAGATTATATATCAATGGGAGGGGAGAGATCTTAAATCTTGAGATATAAAAGGGTTTGGTCGATATTGAGCGGACCCTCAAAATTGTTAAATTCCATCGCAATCTTCGCTTGCAATTGATCTTCCATTC
TTCATTCTTTCGCTTTCGATTAATTATTACTGCCAGAGTTTCAAAGGTCGAAACCTGCGGCCAGCGGATTCCATCGTGAGCCTATTCCTCCACTGCCAAGGAGCCACGGAAATATTGCCACTAAAATATTAATCGATAATTTAACAGGGTTTTACGACATGGCACCGGCTAAAAGACGAGGAGGCAAAACAGCTGCCTGC
AGACAATGGAGGCTTGGAGATCTTGTGCTCGCCAAGGTCAAGGGATTTCCGGCATGGCCCGCTAAGATAAGCAGGCCTGAAGATTGGGAACAACTACCTGATCCTCGGAAGGTTTTTGTGTATTTCTTTGGTACAGATGAAATTGGTTTCTGTGCTCCTACTGACGTTCAGGCATTTACCTCTGAGTTGAAAAATAAGTT
ATCAGCCAAATGTCGAGGGAAGGCTGAAACTGACTTTACTCGGGCAGTGAAAGAGATATGTGAGGAGTATGATGATAAAGGTATAGAGGAAGAGGACTTTATCCCAGAGATTGATGATGGGAAATCCAGATCATGTATTGATGAAAGCTCAAAGGATTCCGCAGAGAAAGTACAGTTCACAAAAAATGATAAAATCCAAG
AAGCAACTGAGGCAGAGGACATGTTGGAAATCCATAAAGATACATCTATTCAAATGCATTATGAGACTGTCATCAAGAAACATGATATTAAGAGGGACGTACATAGGCAGGATAACTGGCAAAAGACACGTGGGGTTGGTGAGAATAAGAAAAAGCCTGCTACCTCTCTGATCTCGTCTGATAAGAAAGATAGGAAGATG
CTCAATGCAGTCCAGGTTGGGCTTAAAAAGCACAGTTCATTATCAACATCTAAATCTGACAACATGAGGTCCATGCTAAAGATAAAGAAGCCTACAAGCCATTTTGAGGAAAGATAAAGAAGCCTACAAGCCATTTTGAGGACCATTTGAGGTCTGATGTTTCTGGTGCAGTGCCTACAAGCCTTTTTGAGAACCATTTG
AGGTCTGATGTTTCTGGTGCAGTATCTACAACAGCTGAGCCAGAGTTGAAGACAATAAAGAGAGATTTTAAAAGGTCATCAGAGAGTGAAAGCAATATTCATAATGACGGAGACAACATTATGCTTTTTTCTTCTTATCTTGAAGAAAATGGGGCACATTCACCAGATACAGGCATTATTTCAGAGCAGACCACGAGTGA
AAAGCAGTTTGGTCAGAAAAGGCAAAGCATGGAAAAAGAAATTAGAGGTTCTCGATTAGTGCCTGAAAGTGAGCTCCTAGATCGTAGAAAAACAGTGACAGATAACAGTGTTAGCAATTTTGAATCTTTTAAACATGGAAACACTGAAGACAGCATTCAGGTATCAAACTGTAAAGAAAATTTGAAGGGTGAAAAAGATT
ATGAAAATATTCATGAAAATTCTGTTCCTAATGACAAAGATCATGTGCTTTCTACATTTATGACTAGAGAGAATGAAGTTAGGGTAGTTCCAAATACTTCTTTTCATCAGAATTCCATTCTGAAGAAGAAAAGAAAGCTCTTGAAGAAACATAATTCCGGGTTATCAATTCTACCAGAGAGATCTGACGATCAAAGAAAG
ATAAATATCTGCACGGAAGAAGAAAATGTTCTTGAATTATTATCAGGAGTAGATCATCGAAAGAAAAGGACACAGATTAAGGCAAGGAAACATAAACTTAACTTTGATGAACATTTGCATTTGGTAAAAAGGGCAAGAAATGAAGCTGAAGATGAAACCAATCAAATTGTACAAGGCTTGAATAAAGGAGGTGTAATAAG
TGCCATGGACAATAATGGAGAAAATATGGCAGCAGATAATGCTTTTGTGTTAAATGAATGCCATTTGAGAACTAATAATATCATAAGTTCTAACAGTCTTGAAACTGAAGGAGATTTGTCGCATGGGCAGACGTCTTCAATTCTCATGGAAAGGCCTATGTGTTTGCCACCAAAGGCTGATAAATATCGTTTGAGAAGTA
GCCTACCGAGTGATGAAGCTGCCCTGCCTCCCTCTAAACGACGTCACCGGGCTCAGGAAGCTATGTCTGCATGTGTTGCAGAGGCTGCAACTGCTTTAGTGGAACCGGTGACAACTGGTGTGATTGGACAGGATGATGCATACAAGATTTCTGCAGATGAAAAACTTTATACTAAATGCTTTGATAATGACAAGAAGTCA
GTTAAGGGAAATGAGGAATGTGTCAAAGTAGACACGTTGATTCAAAAAGAAGCAAAAGAAACAGGAGGTAGCAAGAAACCTGTGGTGTCTTCAGATTCATATCACTCCTTTATGAGGTTTTCTTCAGAACCTGCTAAATGGGTAGAGGAGAAGCAGATGGATCCATGGTTTGGAGATTCAATGTCCTATAAGCATATGGA
TAAATGGCAGATTGGAGATAAAGATGAGAGGAATGCACACGCTAAAATGTCTACTGAATCATCATTGACTGATAAAAAAATGGAAGAACAAAAGCTACAGAGCATGACTGGACCAGTGCTGCCTTCTCCAAAGAAGCAAGATGGTTCAAATTTAGCTTCAAGACAAGTCAATTCAATCAGCACACCTCCAATCAAGGCTT
ATGTTGCACAAAAAGGTGAGGCTGACCAATATGAATACAAGTCAAAGAGCATCAGGGTGAAGAAATCTTGTGCGACCCCAGCAAAGAAAAATAGCAGAGGCCTTAAGAAAGATCATGGGCAGTCTGGCTCAGACAAGCTTAACCAAGGGCAATTAGCTAAGCAGTTGGCTGTTCGCAAGCATGATCAAGTTTCCCCCATA
AGATCTGGCACTGAACCTTCAGCAGAAAAAGTTGCAGGTTCTTCAAAATTTAAGGTGAAGATAAATGGTACTGCAGCAATGAAATTGGATGGTGTGTCACAATCTACAGAGTTGCATTTAGAAAAAGCAAACAAGCTTAGACAAGTGTATGATGCTGCATTGGCAAAAGAAATAAAATTCAGAACTATGTCAAACGATTC
TGACATTGCTACCCCATCTACATCTATGAAGCATCTTATAGCAGCTGCACAGGCTAAGCGAGAACAGGCACGTTCTGCAGCTCTGCCACATTCTGTTTCAATTGAAGAAACTGATAATTCTATTCCTTTTATATCCAGTCCTTCACCAATCCGAGGGAGTAGTTCAGATCACAGTTCCCCACTCCAACATCACTTTGATG
GTGAGGCACCTGAGGATACGAAGGATGCCATTGCCCATACAGAATCAAGAAGCCCCAGAGTTAATGTGCAGCAGTGGGGTCTGCCGAATACAATGGATCTGGAATCAAGTGAAGAAGGTAAAAGAAGCTCAGAGCGAAAATCGGTTGGAGGGACAATTAGTGGGGATACAGAAGCAGCAATTGCCAGGGATACTTTTGAG
GGAATGCTTGAAACGCTGTCAAGGACGAAGGAAAGTATTGGCAGAGCATCTCGTCATGCTATTGACTGTGCAAAATATGGCCTTGCTGGTGAGGTTGTTGAGCTTATTGTTAAAAGACTGGAAAATGAAACGAGTTTCCACCGGAGGATAGACTTGTTCTTTCTAGTGGATTCAATAACCCAATGTTCACACACCCAGAA
AGGTATTGCTGGAGCCACATATCTTCCTGCTGTGCAAGCTGCTCTTCCACGATTGTTGGGTGCAGCTGCTCCCCAAGGAAGTATTGCACGTGAGAATCGTCGTCAGTTTCTTAAGGTTTTGAGGCTTTGGCTGGAGCGAAGAATTCTTCCGGAACCTGTTCTGCACCGTTACATGAATGAGATTGGACCTTCAAATGATG
ACAGAGCTGGTGTTATCTCATCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGATTAAAGCACAAGAAGAGCCAAGAGAGAGCTCTGTTGATGACCCATTGAGGGAAATTGAAGGGATGCGTTGATGAATATGGCAGTAATGCAACTTTTCAGTTGCCAGATTTCTTTTGATGAATATGGCAGTAATA
CAACTTTTCAGTTGCCAGGTTTATTGATGACACATATGTTTGAAGAGGAAGATGACACATATATTTGAAGATGACGAGGAACCAAGTGCAAATGACTTGAAGAAGTGTGATGACAATTTACCCGTTGAAGCTGTTAAAGCACAAGAAGAGCCAAGAGAGAGTTCCGTTGATCCTATGGAAAGGCATCGGCACATCTTGGA
GGATGTTGATGGTGAGCTTGAAATGGAAGACGTCTCCCCACCACCAGAATATGATTCAAGCTCCTGTAGAGATCATTATATGCCGCCAATGACAGCACAAGAGATGGCTCACTGTTCCTTACCTCCAGATCAGAGCAACCTTTGCCCTCAGCCTCCACTACCTAATGATCCACCTCCATTACCCAATGATCCACCTCCAT
CCCCTCCACCCTTGCCTCCATCCCCCCCTCCACCACCACCCAGTTCTCCCCCACCTCCTCCACCTCCCTCTCCTCCCATTGTTTGTCCACCACCCTTACCCCAGTCATATACTACACCTTTAAATGACTCTCAACTACATCTTTTATCTGGAAATACTCAGCAGCCTCCTGGTCAGGTTGTTAATAATGCAGCAGTATTT
GATTCTTATAATTCTAATGGATTTCCAGCATCTCAGATGCTTCCTGGCCAAAATATTGTATCTTTCAATTCTAGTAGGCCTTTCGATTTTTTACAGAGTAGCATGCCTGGGGTCCCTCAGAGTGCACCTCCTGTCCAACAGTTGCAAATAAGTAATACTAATGTCTCATATACTCAGCACTCATACTGCCCACCTCCCCC
TACTCTGGCACCATCTAATCAGTTTTCCTATGTAAGGGCTGAAAGTCGACATCCCTTGCAACAAGCTTGGTTAGATTCTTCTCCATCTCCGATTCCTGAATGTGAGAAAATATCTGCTCAAGATGAACAACAGAGGTTTCTCCAGAGTGAAAGAAGTGTAAGACTGGAGGATCAGTTGTTGAACCAACAGGCAGGGGGGT
GCAAAACATTGTGTGCAAGTTCAACGTTTGGGCAAGAAGTCACCCCTGGAATGCCTTGGCCATCTGGAGGAACCCAATATTCTTGTGGGTTGCAGCTGCCAGCACAGAACCAGATGATCATAACATCTGGAGTTCCACAGCCAAGTATGGATATGGCATTTAACACTTACTCGGGTCAGGCTGCAGGGTTAACAGGCAGC
TTGGTTGCAGCACCTACGAATCACGTTTTGATCCATATGTCTAGATCTGGTATTTCTTCTGCAAATTCTTGGAGGCATACGTGATGGACCATATGGGAAATGAAAGATGTCCTGATTTCGAGTGGAAGCAAATAAGCTGTGCAATGGGCAAGTTTAATCCTCAAAAGAGCCGGTGAGAGAAGATTCCTTATTCTGGAGAA
GTCTGTAGATTTGATGTATGTTGTTAACTTTCTTAGACTTTGGATATTGCCGGCAAATAGGTTGATATTGTTAACTGTATATACTGTAACTTGCTTCACTATCTGCATTTTGCAGATGCATATAAAATTGTGCTTCTCTCATTCTTTCTGATAGCAAGTTTCCCAAATCTCAATGAATGAGTCATATGTAACATGAATTG
ATTGAATCAGAGATCGTAATTTCAGTCTTGTCTTGGCCTTCTGTTGGATTATATTCTTCTAATCAGAGCATATTGTACATCTCCCTTTGGGATACTCAATATACACAGTAAATATAAAATCTGTCTCTTCCAACGGGTTGCCTTCTGAAGGAAAGCAATTTTGGAATTAAGTGTCCACTACAATTTTCTTTGTAAATGAC
AATTTTGAGTTTCATGACTTTGTATAGTCTCCAGAGCTGTTGCATCACACAAGAGGATGCATGCATATTTAGACTATATAGCCCAACATTCAATATTATGTGTGACTTCAGTGTTGATATTTATTGGGGTCTTAAAGGGATCCCATTAATTGCACTCCATTGTGATCTACTACTGTGCGAATCCCTATTGACTGTGGTCC
AATCATAGTGCATTTACTATAATTTTTTACAAATGAGAAGGGCGAAAATTGTCATTTCAGTCAACTAGTGTAAATGGGGCTAACTAGAGTAGTATGCTGATGGTTCAGTAGGCTGTATACGAATAAGTACATTTTAAACAACataaaataacaaaaaatagtaaaaacaagtgctgtctcaagtgaccattatttggctc
ctgtcgcctgggtttctgtgtttcatttccacattatgtggtttcactctttgcattgctgaagtttcctcaccaaccatgttttatgtggctgtgctaatggattctccctcagaataattatataggcttcagtgcttaggaagaaaataattatgggtatctgtaattattttgatgcacttcaaagcctcataaat
tgtttagttctggaaacccctgaacttttctgcaaaaattaacttgttaagcattgtttcaagactagtcctatattatccttgtataattggatattttacaggtgtgttgccatcccatggctcgatacatagaagtccagacataaagctgtcagaaaatataacagtcttccagtaagaaacATAGCAAGAACCAA
AAAAGAGCATCAAAGGGAGAGGATTTGTTCTGCAGGTTTGCCTGCCATTGCTTTGACCTTTATCAAAACCCCCATGATTCAGCTGAATTCATTCTTTTGAGAGAGCATCCGCTTGGCTTTTAATTCTCTGAAAATATGGCTAATTGTAAAGGAATTAAAATAACCAGCAGCCTCTTTAAGATGTTCCCCTAGAGCCCACA
GAGAAGTATTAAGTATTTGGTGGTCATCCTTCATCCACTTAACAACCAAGGAAGAATCCCTGAAGAACTTTATATATAAGTTGAATAATTTTGCATTTCAATTATAAGATCAGTAAACACTGACTATTTTCAAAGCTTAGGTTGGTTAAAAATGTTTCCAACAACAACAAACGAGGAGACAAAAG
Intron 7 GTAAAAATAA ... TTGTCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.42 | 7 | 2 | 41 |
| A2 | 76.19 | 15 | 15 | 48 |
| A3 | 73.63 | 24 | 4 | 67 |
| A4 | 79.25 | 11 | 6 | 42 |
| A5 | 78.26 | 5 | 8 | 18 |
| A6 | 72 | 63 | 26 | 162 |
| A7 | 76.86 | 59 | 14 | 196 |
| A8 | 77.39 | 45 | 18 | 154 |
| A9 | 75.98 | 80 | 25 | 253 |
| A10 | 72.69 | 74 | 22 | 197 |
>TRINITY_DN44455_c2_g1_i10 from sample A6 / Example spliced isoformATAACACTTGCGATACATTTTGGAAGAAGTGAAGTTGTATTTTACAGCCGAAAGCGAAGGGTCAAAGTATCTCTCCGACCAACATTGAAAAGATACAGTATTAACAGTATTATGATGACCACCCAAGTAAATTTACACGACTATTAATCTTAGCAGATCTTTCCTTCACCAACGGTTTGGCAGATCTAGGGATCGAGTCT
CTACAATTAGCTTTTGAATGGTTTTAAGAGGCGTGGCGTCGAGCTGAGTATTTCCGGAAAGGTGGACAAACAGGGTTGCAGTAATTGGAAGTCTTGAATCTCATGGCTTCCTCCACAAGTCAAGGGGACTTCGACCATGTGTTCAAATTGTTAATGATTGGAGATTCAGGAGTTGGCAAGAGCAGTCTTCTTTTGCGGTT
TACATCAGATTCCTTCGATGATCTCTCCCCTACAATCGGCGTGGACTTTAAGTTAAAGCTGATGACAATAGGAGGGAAAAGGTTGAAATTAACAATTTGGGATACAGCTGGCCAAGAGCGTTTTAGAACATTAACCAGTTCATACTACCGAGGAGCACAGGGTATTATTTTTGTTTATGATGTTACACGACGAGAAACAT
TTACAAATCTGTCGGAGGTATGGGCAAAGGAGGTGGATCTGTACTCAACCAATCAAGACTGCATAAAGATGCTTGTTGGAAATAAAGTTGACAGGGAGAATGAGAGAGTTGTCACCAAGAAAGAAGGCATTGCTCTTGCAAGGCAATTGGGATGCTTGTTTCTTGAATGCAGTGCAAAGACACATGTCAATGTAGAAAGT
TGCTTTGAAGAGCTTGTTCAAAAGATTTTAGACACTCCAAGCCTATTGCAAGATAGTACAACTGCAGCAAGGAAAAATATTTTCAAGCAAACTCAGGAAAATGATGCAAATACTGGCGGCTGCTGTTGATAGTTTGAATGTCTCAAACGAACTAGCTCATGATTGAGCTGTTATTTAATTTGGAAACATACTAACAACTC
TTGAATTATGAGGTTTTCTTATTCTTGATCAGCACTGATCAATCAAATGTTTCACATTTGTTGATTAAGATCTTGAAGCATCTTGTATATATTGCAGTGTTTATATATAGGTACTCTCGAAGACACTTATTTGTTCATGTAGTTTGAATTCTGTTATAGGCAGCCTGCTGTGATTGCTAGAATGTCTGTCATCTTCTGCT
TTTTATTTTATTCAGGCGAGATTGTGCCTTTCAGTCTAAAGTTCATATTACCAGTTCTGTCTATAATTCTGAGTTATTTACAAGCTACAGTTGACTCTGTTACTCACAAAGCAGAAATACCAGATGGTTTGAATCCCAGTTACGTCTTTTCTGTGTTTTATTCTTCATTGAAGGCCCCATATTATTG
>TRINITY_DN44455_c2_g1_i4 from sample A6 / Example unspliced isoform:ATAACACTTGCGATACATTTTGGAAGAAGTGAAGTTGTATTTTACAGCCGAAAGCGAAGGGTCAAAGgtaaaaataaaaattccctcgcaccaaatctcagttcagcacgcgaattcacgtttaatttttacttgcatattttcctatcgatattctgatctgggagcgtctgtgcttcggatttctaattgtcatccag
ctttgtctgtagTATCTCTCCGACCAACATTGAAAAGATACAGTATTAACAGTATTATGATGACCACCCAAGTAAATTTACACGACTATTAATCTTAGCAGATCTTTCCTTCACCAACGGTTTGGCAGATCTAGGGATCGAGTCTCTACAATTAGCTTTTGAATGGTTTTAAGAGGCGTGGCGTCGAGCTGAGTATTTCC
GGAAAGGTGGACAAACAGGGTTGCAGTAATTGGAAGTCTTGAATCTCATGGCTTCCTCCACAAGTCAAGGGGACTTCGACCATGTGTTCAAATTGTTAATGATTGGAGATTCAGGAGTTGGCAAGAGCAGTCTTCTTTTGCGGTTTACATCAGATTCCTTCGATGATCTCTCCCCTACAATCGGCGTGGACTTTAAGTTA
AAGCTGATGACAATAGGAGGGAAAAGGTTGAAATTAACAATTTGGGATACAGCTGGCCAAGAGCGTTTTAGAACATTAACCAGTTCATACTACCGAGGAGCACAGGGTATTATTTTTGTTTATGATGTTACACGACGAGAAACATTTACAAATCTGTCGGAGGTATGGGCAAAGGAGGTGGATCTGTACTCAACCAATCA
AGACTGCATAAAGATGCTTGTTGGAAATAAAGTTGACAGGGAGAATGAGAGAGTTGTCACCAAGAAAGAAGGCATTGCTCTTGCAAGGCAATTGGGATGCTTGTTTCTTGAATGCAGTGCAAAGACACATGTCAATGTAGAAAGTTGCTTTGAAGAGCTTGTTCAAAAGATTTTAGACACTCCAAGCCTATTGCAAGATA
GTACAACTGCAGCAAGGAAAAATATTTTCAAGCAAACTCAGGAAAATGATGCAAATACTGGCGGCTGCTGTTGATAGTTTGAATGTCTCAAACGAACTAGCTCATGATTGAGCTGTTATTTAATTTGGAAACATACTAACAACTCTTGAATTATGAGGTTTTCTTATTCTTGATCAGCACTGATCAATCAAATGTTTCAC
ATTTGTTGATTAAGATCTTGAAGCATCTTGTATATATTGCAGTGTTTATATATAGGTACTCTCGAAGACACTTATTTGTTCATGTAGTTTGAATTCTGTTATAGGCAGCCTGCTGTGATTGCTAGAATGTCTGTCATCTTCTGCTTTTTATTTTATTCAGGCGAGATTGTGCCTTTCAGTCTAAAGTTCATATTACCAGT
TCTGTCTATAATTCTGAGTTATTTACAAGCTACAGTTGACTCTGTTACTCACAAAGCAGAAATACCAGATGGTTTGAATCCCAGTTACGTCTTTTCTGTGTTTTATTCTTCATTGAAGGCCCCATATTATTG
Intron 8 GTAAGATTTC ... ATGGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.27 | 25 | 33 | 24 |
| A2 | 50 | 20 | 26 | 14 |
| A3 | 34.62 | 34 | 15 | 21 |
| A4 | 40.17 | 35 | 22 | 25 |
| A5 | 53.85 | 9 | 15 | 6 |
| A6 | 34.12 | 28 | 16 | 13 |
| A7 | 29.73 | 78 | 31 | 35 |
| A8 | 39.13 | 30 | 16.6 | 22 |
| A9 | 39.47 | 46 | 34 | 26 |
| A10 | 28.3 | 76 | 21 | 39 |
>TRINITY_DN120206_c1_g1_i7 from sample A3 / Example spliced isoformGCAAAATCCTCAATCTACTAAACAACATCGGCTGCAACGAGATTTTGGGTTTTGGCGCAAAGGCTAAAGGCTGAGTGGAAGAAGTCTTAAGATGCTAATTCTATATTTTTATGAAAATATTGCCTATCCTCTGTTCTGACCGTGATCCAAATTTTGAGGGCTCAAACCCTGTTGCAGAGTGAATTCAACGACCGACATAG
TGGGATTTTTTTTATTGCAAGCCATTGTTAAGGGTTAAATTCTTTTAAACTCTCCACATGCTTTTAAATTTTAGCGAGCTTTACGTCTGGCCAGCTTCGTGGATCATTTGGAGTAGAACCCTTATTCGCAAAAATAATCGATCTCACGACCTTTGAAAAGCTTTTACGCTTGGAAAATTTCAGCTTGTTAAGTAGAAGGG
AACAATGCAATCATCACTCTTAATATAGTAATGGAATGTATTTAGAGTCTGGCTGAACTTAAATTGACCTCCCTCCATCAAATGAAACTCACTATTTGAGGATGAGAAAAGGGGCATCCCATACTGTGCCGTGGGTATCCGTTCATTGGTGACCTGCGTTGAAGTGGAACCTACAGCCTCTGCACAGAGGAAATATGGGG
TGGTGTACTGCAAAGCGACATGACACCACGAATCTGTATTCGTAATTCTTTTCGATACTTTTCGTAAACAAAACAATTCCCATTGCCTTGTATTTGCTGAGATGGAGTATGGCCATCTTTGAGTTTCTTAAGGTTTTGAGGCTTTGGCTTGAGCGGAGAATTCTTCGGGAACCTGTTCTGCACCGTTACATGAATGAGAT
TGGACCTTCAAATGATGACAGAGCTGGTGTTATCTCATCAAGGCGTCCGTCTAGAGTGCAGCGTGCTGTTGATGACCCATTGATGGAAATGGAAGGGATGGTTGATGAATATGGCAGTAATTCAACTTTTCAGTTTCCAGGTTTCT
>TRINITY_DN120206_c1_g1_i4 from sample A3 / Example unspliced isoform:GCAAAATCCTCAATCTACTAAACAACATCGGCTGCAACGAGATTTTGGGTTTTGGCGCAAAGGCTAAAGGCTGAGTGGAAGAAGTCTTAAGATGCTAATTCTATATTTTTATGAAAATATTGCCTCAAACCGTGATCCAAATTTTGAGGGCTCAAACCCTGTTGCAGAGTGAATTCAACGACCGACATAGTGGGATATTT
TTTATTGCGAGCCATTGTTAAGGGTTAAATTCTTTTAAACTCTCCACATGCTTTTAAATTTTAGCGAGCTTTACGTCTGGCCAGCTTCGTGGATCATTTGGAGTAGAACCCTTATTCGCAAAAATAATCGATCTCACGACCTTTGAAAAGCTTTTACGCTTGGAAAATTTCAgtaagatttctgacttcatgcatgtcaa
caaatctttcaaatacttctaggggttttggtgttaattctagattttcatgctagttacttccaaatattgctcctaaaattttggcatcgcttcaccctaattcgccccgtgaaatggttacagGCTTGTTAAGTAGAAGGGAACAATGCAATCATCACTCTTAATATAGTAATGGAATGTATTTAGAGTCTGGCTGA
ACTTAAATTGACCTCCCTCCATCAAATGAAACTCAGTATTTGAGGATGAGGTAAGCTCAAAATTCATTTCTCACTATTTTCCTATTTTGGGCTCATAAAATGAAGAGAATTACTTTAATTTAATCCAGTTTACATACAATGGAATGAGTGAACTATTCCAAATCAACTCTTACGAATTTAGTTTCACGGGCGTTGAATTG
TTTGGGCAATTAACCTACTTGCACCTCCATTTTGTATACATTGTTTGCTGAGCCCGTAGTGGTGTGACCTCCAGAAAAGGGGCATCCCATACTGTGCCGTGGGTATCCGTTCATTGGTGACCTGCGTTGAAGTGGAACCTACAGCCTCTGCACAGAGGAAATATGGGGTGGTGTACTGCAAAGCGACATGACACCACGAA
TCTGTATTCGTAATTCTTTTCGATACTTTTCGTAAACAAAACAATTCCCATTGCCTTGTATTTGCTGAGATGGAGTATGGCCATCTTTGAGTTTCTTAAGGTTTTGAGGCTTTGG
Intron 9 GTACCCAATT ... TTGCCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.9 | 104.9 | 105 | 183.1 |
| A2 | 62.71 | 102.1 | 138 | 204.7 |
| A3 | 70.91 | 94.6 | 169 | 291.5 |
| A4 | 68.4 | 49.8 | 81 | 134.3 |
| A5 | 65.7 | 43.2 | 61 | 104.1 |
| A6 | 70.01 | 30.1 | 38 | 101.7 |
| A7 | 63.42 | 38.3 | 34 | 97.4 |
| A8 | 78.07 | 16.3 | 31 | 82.2 |
| A9 | 72.16 | 31 | 41 | 117.9 |
| A10 | 73.11 | 36 | 51 | 143.9 |
>TRINITY_DN119242_c5_g1_i2 from sample A1 / Example spliced isoformAGGGGATTAAACTCCCTATTGGTTACATAAGACACGCCAAAGAACAAAAGATTATATATCAATGGGAGGGGAGAGATCTTAAATCTTGAGATATAAAAGGGTTTGGTCGATATTGAGCGGACCCTCAAAATTGTTAAATTCCATCGCAATCTTCGCTTGCAATTGATCTTCCATTCTTCATTCTTTCGCTTTCGATTAAT
TATTACTGCCAGAGTTTCAAAGGTCGAAACCTGCGGCCAGCGGATTCCATCGTGAGCCTATTCCTCCACTGCCAAGGAGCCACGGAAATATTGCCACTAAAATATTAATCGATAATTTAACAGGGTTTTACGACATGGCACCGGCTAAAAGACGAGGAGGCAAAACAGCTGCCTGCAGACAATGGAGGCTTGGAGATCTT
GTGCTCGCCAAGGTCAAGGGATTTCCGGCATGGCCCGCTAAGATAAGCAGGCCTGAAGATTGGGAACAACTACCTGATCCTCGGAAGGTTTTTGTGTATTTCTTTGGTACAGATGAAATTGGTTTCTGTGCTCCTACTGACGTTCAGGCATTTACCTCTGAGTTGAAAAATAAGTTATCAGCCAAATGTCGAGGGAAGGC
TGAAACTGACTTTACTCGGGCAGTGAAAGAGATATGTGAGGAGTATGATGATAAAGGTATAGAGGAAGAGGACTTTATCCCAGAGATTGATGATGGGAAATCCAGATCATGTATTGATGAAAGCTCAAAGGATTCCGCAGAGAAAGTACAGTTCACAAAAAATGATAAAATCCAAGAAGCAACTGAGGCAGAGGACATGT
TGGAAATCCATAAAGATACATCTATTCAAATGCATTATGAGACTGTCATCAAGAAACATGATATTAAGAGGGACGTACATAGGCAGGATAACTGGCAAAAGACACGTGGGGTTGGTGAGAATAAGAAAAAGCCTGCTACCTCTCTGATCTCGTCTGATAAGAAAGATAGGAAGATGCTCAATGCAGTCCAGGTTGGGCTT
AAAAAGCACAGTTCATTATCAACATCTAAATCTGACAACATGAGGTCCATGCTAAAGATAAAGAAGCCTACAAGCCATTTTGAGGACCATTTGAGGTCTGATGTTTCTGGTGCAGTGCCTACAAGCCTTTTTGAGAACCATTTGAGGTCTGATGTTTCTGGTGCAGTGCCTACAAGCC
>TRINITY_DN119242_c5_g1_i1 from sample A1 / Example unspliced isoform:AGGGGATTAAACTCCCTATTGGTTACATAAGACACGCCAAAGAACAAAAGATTATATATCAATGGGAGGGGAGAGATCTTAAATCTTGAGATATAAAAGGGTTTGGTCGATATTGAGCGGACCCTCAAAATTGTTAAATTCCATCGCAATCTTCGCTTGCAATTGATCTTCCATTCTTCATTCTTTCGCTTTCGATTAAT
TATTACTGCCAGAGTTTCAAAGGTCGAAACCTGCGGCCAGCGGATTCCATCGTGAGCCTATTCCTCCACTGCCAAGGAGCCACGGAAATATTGCCACTAAAATATTAATCGATAATTTAACAGgtacccaattgttatgaggcattgatacgattgtggcgtcggggcaggggaaaattcatggtgttatggaaattctg
gaagaggaggactgggagggtataatacttgtttagggtatgccagagaggaataataataaaggttacgtttgccgttgccatcagGGTTTTACGACATGGCACCGGCTAAAAGACGAGGAGGCAAAACAGCTGCCTGCAGACAATGGAGGCTTGGAGATCTTGTGCTCGCCAAGGTCAAGGGATTTCCGGCATGGCCC
GCTAAGGTACGCCATTCTATTTTTTATCCCCATTTGTTTGCCCTAATTTTCATTGATGTATGAGATGTAAGCTGTTGCTATTATTTGCATTTGCCACATCAAATCATATACTTTTTGTGTTCTGTTGTAATACCTGATTGTCGTCCAAGGGTTTGTGTGAATGTTTATGGATTTTCATAGGGTTTCATATCCATTGTGCC
GATTGCAATGGCTATCGGGCATCTTTCTCTATGATGTTTGTTTTGATTGCCCAATATGTGCCGATATTTTCTTCTTAATCCTAGAATTGCAAAACCTGGTTGCTGCACGGAGTTTCTCTGAAACCCTGCACGAGAAATCAAACCCTATATCAGAAATTAGTGTTTAAACCCATGCGATGGATGCAAGTTTTTATTTTTGG
GCTGAAATTGTTTCCGTATAACTCCAAGAGGATTACAATTGGCCCGAATTCGTCAGGCCCTCAAGCGGCCTGTTTTTTAGGAATACGATGGCCC