sp|Q40345|IDHP_MEDSA ----> Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)


Intron 1 GTAACCCTTC ... GACCCTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A133.3380409
A235.71724012
A335.45713912
A433.3372369.3
A522.7334103.8
A633.3336618368
A734.8148525962.3
A834.2458230383.3
A933.2948924460.8
A1035.9924914019



>TRINITY_DN102243_c0_g3_i3 from sample A4 / Example spliced isoform
CCATATGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTA
GGGTCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTTACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATATTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTT
GGCTTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAA
ATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACG
ATGGAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGA
TCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACT
TGAATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTGAGTTCTTAAGGAATTG
TGAAATGTGTGGCGATTTTGAGCCTGCAAGAGTTGTTTGAAGTAGTAGGTCAGTCAGCTGCTAGGGAAATGTATAATAAAGCCAAGTAGACAAGGCTCATGGAATAGATGTTGTGGCCTTTGAAAGGCAAAACATTGGCTATGCTTTCTGATTTTGAAGTTTACATTTGCAGTCGTTGTTGTCATATTTGGAGGACTCTT
TCCTCTTTTGATTGTTAGAAATTTTAATGCTCCTACACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCAATTAGACAAGCACACAACTAGAATAAGTATTGTTTTAACTATAAACTCTTCATGTTAGCTAGCAGACAGCAAAATTTGTTTCTTACCATGAAAATATGAATGCGGTG


>TRINITY_DN102243_c0_g3_i5 from sample A4 / Example unspliced isoform:
CCATATGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTA
GGGTCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTTACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATATTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTT
GGCTTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAA
ATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACG
ATGGAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGA
TCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACT
TGAATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTgtaacccttctgcatcc
tttcgttggcctggcattggccgatattttcataaatagttttggcagaattcattaaatagttattgaaatatgttgggcatgactttaagagatgtctaacgtgtgtagaatctaacaatcttgccggttcagtagagttatgtagccttcatggttaatagaattcagtgcaagatggaaaaaatgattttgaattc
acctttattttgtgcaaagttgccggaacaaaatatcaattttcaataacaagcaaatcttgaaataggcataaaccaagtgaaagttttgctatttttatccgtagtcttattttgcatgaattgttgtttctgcataaattctaactggaatttcaccgaccctgcag
GAGTTCTTAAGGAATTGTGAAAT




Intron 2 GTTGTAACCC ... GACCCTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A134.1383439.8
A237.19764513.8
A333.64713613.3
A432.69703410.3
A522.7334106.3
A633.66374.519074.7
A735.3749727268.3
A834.5658731091.3
A933.5649525068.5
A1036.5724814321



>TRINITY_DN117747_c0_g1_i3 from sample A2 / Example spliced isoform
TATGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTAGGG
TCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTAACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATGTTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTTGGC
TTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAAATT
AGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATG
GAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAGCTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGATCC
CTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAACGGCTACTTGA
ATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGAGTTCTTAAGGAATTGTGAAAT
GTGTGGCGATTTTGAGCCTGCAAGAGTTGTTTGAAGTAGTAGGTCAGTCAGCTGCTAGGGAAATGTATAATAAAGCCAAGTAGACAAGGCTCATGGAATAGATGTTGTGGCCTTTGAAAGGCAAAACATTGGCTATGCTTTCTGATTTTGAAGTTTACATTTGCAGTCGTTGTTGTCATATTTGGAGGACTCTTTCCTCT
TTTGATTGTTAGAAATTTTAATGCTCCTATACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCAATTAGACAAGCACACAACTAGAATAAGTATTGTTTTAACTATAAACTCTTCATGGTAGCTAGCAGAGAGCAAAATTTGTTTCTTACCATGAAAATATGAATGCGGTGTAATTTAGCCCTGCACCTGTAC
CCTTGATTGAATGGATTCGATGCAGCAGCATGCATTGTTTTAAGGTCTTATGATTCAAGAATCTTAGGAATAAAACAATGGACCAGATTAAAGCTGAAAATTGGTATATGCATATGAGAACAGACACTTCGTATTGGCCTTACATGTGCTATCCTTAACTAT


>TRINITY_DN117747_c0_g1_i6 from sample A2 / Example unspliced isoform:
TATGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTAGGG
TCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTAACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATGTTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTTGGC
TTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAAATT
AGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATG
GAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAGCTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGATCC
CTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACGAACAGCATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAACGGCTACTTGA
ATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAgttgtaacccttctgcatccttt
cgttggcctggcattggccgatattttcataaatagttttggcagaattcattaaatagttattgaaatatgttgggcatgactttaagagatgtctaacgtgtgtagaatctaacaatcttgccggttcagtagagttatgtagccttcatggttaatagaattcagtgcaagatggaaaaaatgattttgaattcacc
tttattttgtgcaaagttgccggaacaaaatatcaattttcaatcccaagcaaatcttgaaataggcataaaccaagtgaaagttttgctctttttatccgtagtcttattttgcatgaattgttgtttctgcataaattctaactggaatttcaccgaccctgcag
GAGTTCTTAAGGAATTGTGAAATGTGTGGCGAT
TTTGAGCCTGCAAGAGTTGTTTGAAGTAGTAGGTCAGTCAGCTGCTAGTGGAAATGTATAATAAAGCCAAGTAGACAAGGCTCATGGAATAGATGTTGTGGCCTTTGAAAGGCAAAACATTGGCTATGCTTTCTGATTTTGAAGTTTACATTTGCAGTCGTTGTTGTCATATTTGGAGGACTCTTTCCTCTTTTGATTGT
TAGAAATTTTAATGCTCCTATACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCAATTAGACAAGCACACAACTAGAATAAGTATTGTTTTAACTATAAACTCTTCATGTTAGCTAGCAGACAGCAAAATTTGTTTCTTACCATGAAAATATGAATGCGGTGTAATTTAGCCCTGCACCTGTACCCTTGATTG
AATGGATTCGATGCAGCAGCATGCATTGTTTTAAGGTCTTATGATTCAAGAATCTTAGGAATAAAACAATGGACCAGATTAAAGCTGAAAATTGGTATATGCATATGAGAACAGACACTTCGTATTGGCCTTACATGTGCTATCCTTAACTAT




Intron 3 GCTTTCTAGG ... ATTGATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A168.415013286
A266.7846117.568
A362.065011054
A474.06186342.5
A573.021340.530.5
A672.81142455.5311
A774.67177617.5434
A871.31238715.5481
A970.88191552.5385
A1066.73161407.5243.5



>TRINITY_DN102243_c0_g3_i2 from sample A4 / Example spliced isoform
CCATATGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTA
GGGTCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTTACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATATTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTT
GGCTTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAA
ATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACG
ATGGAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGA
TCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACT
TGAATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAATTGCAGAGGATCTGAA


>TRINITY_DN102243_c0_g3_i5 from sample A4 / Example unspliced isoform:
CCATATGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTA
GGGTCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTTACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATATTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTT
GGCTTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAA
ATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACG
ATGGAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGA
TCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACT
TGAATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAgctttctagggagcactacctaaacaccgaagaatttattgatgcagTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTGTAACCCTTCTGCATCC
TTTCGTTGGCCTGGCATTGGCCGATATTTTCATAAATAGTTTTGGCAGAATTCATTAAATAGTTATTGAAATATGTTGGGCATGACTTTAAGAGATGTCTAACGTGTGTAGAATCTAACAATCTTGCCGGTTCAGTAGAGTTATGTAGCCTTCATGGTTAATAGAATTCAGTGCAAGATGGAAAAAATGATTTTGAATTC
ACCTTTATTTTGTGCAAAGTTGCCGGAACAAAATATCAATTTTCAATAACAAGCAAATCTTGAAATAGGCATAAACCAAGTGAAAGTTTTGCTATTTTTATCCGTAGTCTTATTTTGCATGAATTGTTGTTTCTGCATAAATTCTAACTGGAATTTCACCGACCCTGCAGGAGTTCTTAAGGAATTGTGAAAT




Intron 4 GTAGGTTTTG ... TTTTATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A125.45132450
A224.46117.5380
A328.11110430
A422.2563180
A522.8640.5120
A621.55455.51252
A720.29617.51570
A822.65715.52090
A922.91552.51640
A1024.37407.51310



>TRINITY_DN45725_c0_g2_i2 from sample A7 / Example spliced isoform
TGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTAGGGTC
ATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTTACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATATTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTTGGCTT
GAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAAATTAG
TTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATGGA
AGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGATCCCT
TGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACTTGAAT
TTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTGTAACCCTTCTGCATCCTTTCG
TTGGCCTGGCATTGGCCGATATTTTCATAAATAGTTTTGGCAGAATTCATTAAATAGTTATTGAAATATGTTGGGCATGACTTTAAGAGATGTCTAACGTGTGTAGAATCTAACAATCTTGCCGGTTCAGTAGAGTTATGTAGCCTTCATGGTTAATAGAATTCAGTGCAAGATGGAAAAAATGATTTTGAATTCACCTT
TATTTTGTGCAAAGTTGCCGGAACAAAATATCAATTTTCAATCCCAAGCAAATCTTGAAATAGGCATAAACCAAGTGAAAGTTTTGCTATTTTTATCCGTAGTCTTATTTTGCATGAATTGTTGTTTCTGCATAAATTCTAACTGGAATTTCACCGACCCTGCAGGAGTTCTTAAGGAATTGTGAAATGTGTGGCGATTT
TGAGCCTGCAAGAGTTGTTTGAAGTAGTAGGTCAGTCAGCTGCTAGGGAAATGTATAATAAAGCCAAGTAGACAAGGCTCATGGAATATATGTTGTGGCCTTTGAAAGGCAAAACATTGGCTATGCTTTCTGATTTTGAAGTTTACATTTGCAGTCGTTGTTGTCATATTTGGAGGACTCTTTCCTCTTTTGATTGTTAG
AAATTTTAATGCTCCTACACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCAATTAGACAAGCACACAACTAGAATAAGTATTGTTTTAACTATAAACTCTTCATGGTAGCTAGCAGAGAGCAAAATTTGTTTCTTACCATGAAAATATGAATGCGGTGTAATTTAGCCCTGCACCTGTACCCTTGATTGAAT
GGATTCGATGCAGCAGCATGCATTGTTTTAAGGTCTTATGATTCAAGAATCTTAGGAATAAAACAATGGACCAGATTAAAGCTGAA


>TRINITY_DN45725_c0_g2_i1 from sample A7 / Example unspliced isoform:
TGCTCTTCCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTAGGGTC
ATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTTACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATATTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGAGTCAAGGAATTTGGCTT
GAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAAATTAG
TTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATGGA
AGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGATCCCT
TGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACTTGAAT
TTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAgtaggttttgtttttgtgctttaagatctatacattgtaaaatatgcagccttttggtacaaattctaaatgtttcatctttcttgtaaatattttatgcagGCTTTCTAGG
GAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTG




Intron 5 GTAAGTAGAT ... AATTTTTAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A126.67771228
A223.02971529
A328.8379332
A418.4262314
A532.6935317
A626.0533518118
A725.2357820195
A822.7344216130
A926.842614156
A1027.8535516137



>TRINITY_DN119170_c0_g1_i1 from sample A1 / Example spliced isoform
TATGCTCTTTCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACTAGGG
TCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTTACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATATTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGGGTCAAGGAATTTGGC
TTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCTAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGAAATT
AGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGACGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATACGATG
GAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGGATCC
CTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACTTGA
ATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTGTAACCCTTCTGCATCCTTT
CGTTGGCCTGGCATTGGCCGATATTTTCATAAATAGTTTTGGCAGAATTCATTAAATAGTTATTGAAATATGTTGGGCATGACTTTAAGAGATGTCTAACGTGTGTAGAATCTAACAATCTTGCCGGTTCAGTAGAGTTATGTAGCCTTCATGGTTAATAGAATTCAGTGCAAGATGGAAAAAATGATTTTGAATTCACC
TTTATTTTGTGCAAAGTTGCCGGAACAAAATATCAATTTTCAATAACAAGCAAATCTTGAAATAGGC


>TRINITY_DN119170_c0_g1_i3 from sample A1 / Example unspliced isoform:
GTTTTATGTCTTTGCAGGAATAGTATTGAGAATATTGAGCATAATACTAATCATTTGCATCTCTGTTTGTTTATCTCTTATATTTCCTTGAACGTGATTGGACAGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGC
AGAGTGATTTCTTGGCACAGGgtaagtagatcataataaggggatgttcaatgatctgatttggttccggtcatgatgttttaccttttacatctattgtttgcttatgttatgaggacattgattatggttttattaattgtggtaactttgtttttaatttttaagGATTTGGATCCCTTGGCTTGATGACGTCTGTA
CTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTACTTGAATTTACAGAGAAGCTGGAGGT
TGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTG




Intron 6 GTAAGTGTCA ... GCTCTTACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A120.45140036
A218.72165238
A321.12198253
A416.06115022
A521.4355015
A616.4771014
A725.82227079
A827.01100037
A924.3243078
A1017.73181039



>TRINITY_DN110290_c0_g1_i3 from sample A3 / Example spliced isoform
CCCATATGCTCTTTCTGAATCGATTTTTGGCGATTTCGAGTGTTCCATTGAATCGCGGTTTTGGATCAGGAGGTCCGCGAGGTCGTATCGGATCGGTTCCCGTCCTTCTCTGTCTTCGATCGTTCTCTGCTGTAACAATGGCGTCGGAGAAGATCAAGGTTCAGAATCCCATCGTCGAGATGGACGGGGATGAAATGACT
AGGGTCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTAACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATGTTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGGGTCAAGGAATT
TGGCTTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCAAGCTGA
AATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAAAAATAC
GATGGAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGGATTTGG
ATCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAAGGCTAC
TTGAATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTGAGTTCTTAAGGAATT
GTGAAATGTGTGGCGATTTTGAGCCTGCAAGAGTTGTTTGAAGTAGTAGGTCAGTCAGCTGCTAGTGGAAATGTATAATAAAGCCAAGTAGACAAGGCTCATGGAATAGATGTTGTGGCCTTTGAAAGGCAAAACATTGGCTATGCTTTCTGATTTTGAAGTTTACATTTGCAGTCGTTGTTGTCATATTTGGAGGACTC
TTTCCTCTTTTGATTGTTAGAAATTTTAATGCTCCTATACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCAATTAGACAAGCACACAACTAGAATAAGTATTGTTTTAACTATAAACTCTTCATGTTAGCTAGCAGACAGCAAAATTTGTTTCTTACCATGAAAATATGAATGCGGTGTAATTTAGCCCTGC
ACCTGTACCCTTGATTGAATGGATTCGATGCAGCAGCATGCATTGTTTTAAGGTCTTATGATTCAAGAATCTTAGGAATAAAACAATGGACCAGATTAAAGCTGAAAATTGGTATATGCATATGAGAACAGACACTTCGTATTGGC


>TRINITY_DN110290_c0_g1_i5 from sample A3 / Example unspliced isoform:
AATCCCATCGTCGAGATGGACGgtaagtgtcagatcaatttttaccgatgaaattcaagctcctttataggatactaatccaatgcaatacatggcgatggttattccagtaaatacgatgtgggtttgcatttgtttgttgatttcttggttagaggatgttctaggttctgatcgtttgtgctcttacagGGGATGAA
ATGACTAGGGTCATCTGGACAATGATCAAGGAGAAGCTTATTTTCCCATTTGTTGAGCTGGATATTAAGTATTTCGATCTGGGGCTCCCCCACCGTGATGATACAGATGACAAGGTAACAGTTGAAAGTGCAGAAGCCACATTGAAGTACAATGTTGCCATCAAATGTGCAACCATCACACCAGATGAAGCTCGGGTCAA
GGAATTTGGCTTGAAGGCTATGTGGAAGAGTCCCAATGGCACTATTCGTAACATTTTGAATGGTACTGTGTTCAGAGAGCCAATTTTATGTAAGAACGTTCCCAAGCTTGTTCCAGGATGGACAAAACCCATATGTATTGGAAGGCATGCCTTTGGTGACCAATACAAAGCAACAGACGCAGTTATCAAGGGTCCTGGCA
AGCTGAAATTAGTTTTCGTTCCAGAGAAAGATGGTGAAACAACTGAGTTAGAGGTGTACAACTTCAAAGGTGACGGAGGAGTAGCATTAGCCATGTACAATACTGATGAGTCTATACGTTCATTTGCGGATGCTTCAATGAACGTGGCCTATGAGAAGAAATGGCCACTCTACCTTAGTACGAAAAATACAATTTTGAAA
AAATACGATGGAAGGTTCAAAGACATTTTCCAAGAGGTCTATGAAGCTAACTGGAAAAGTAAATATGATAAGGCAGGAATCTGGTACGAACATAGGCTTATCGATGATATGGTAGCCTATGCTTTAAAGAGTGAAGGGGGCTATGTATGGGCATGCAAAAATTATGATGGTGATGTGCAGAGTGATTTCTTGGCACAGGG
ATTTGGATCCCTTGGCTTGATGACGTCTGTACTGGTTTGTCCTGATGGAAAAACTATTGAGGCTGAAGCAGCTCATGGCACTGTAACTCGGCATTTCCGCGTACATCAGAAGGGAGGTGAAACTAGCACAAACAGTATTGCTTCTATCTTTGCATGGACACGCGGGCTTGCACACAGGGCAAAACTAGACGGAAATGAAA
GGCTACTTGAATTTACAGAGAAGCTGGAGGTTGCTTGTATAGGAACTGTCGAGGCTGGAAAAATGACAAAAGACTTGGCGCTAATCATTCACGGTTCCAAGCTTTCTAGGGAGCACTACCTAAACACCGAAGAATTTATTGATGCAGTTGCAGAGGATCTGAAAATGAGGCTTTCTGCCAAACCAAAGTTGAGTTCTTAA
GGAATTGTGAAATGTGTGGCGATTTTGAGCCTGCAAGAGTTGTTTGAAGTAGTAGGTCAGTCAGCTGCTAGTGGAAATGTATAATAAAGCCAAGTAGACAAGGCTCATGGAATAGATGTTGTGGCCTTTGAAAGGCAAAACATTGGCTATGCTTTCTGATTTTGAAGTTTACATTTGCAGTCGTTGTTGTCATATTTGGA
GGACTCTTTCCTCTTTTGATTGTTAGAAATTTTAATGCTCCTATACAGAAGTCTCTAATCAGTTATCATGGGCTATGTATGTGCAATTAGACAAGCACACAACTAGAATAAGTATTGTTTTAACTATAAACTCTTCATGTTAGCTAGCAGACAGCAAAATTTGTTTCTTACCATGAAAATATGAATGCGGTGTAATTTAG
CCCTGCACCTGTACCCTTGATTGAATGGATTCGATGCAGCAGCATGCATTGTTTTAAGGTCTTATGATTCAAGAATCTTAGGAATAAAACAATGGACCAGATTAAAGCTGAAAATTGGTATATGCATATGAGAACAGACACTTCGTATTGGC