sp|Q50EK3|C04C1_PINTA ----> Cytochrome P450 704C1
Intron 1 GCCCGGGGCT ... ATTCTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.64 | 20 | 16 | 50.5 |
| A2 | 58.89 | 12 | 26.5 | 7.5 |
| A3 | 68.44 | 11.5 | 25.5 | 21.5 |
| A4 | 68.06 | 7.5 | 12.5 | 19 |
| A5 | 57.85 | 10 | 10 | 17.5 |
| A6 | 48.67 | 57 | 59 | 46 |
| A7 | 49.17 | 63.5 | 51 | 71 |
| A8 | 56.14 | 57 | 46 | 98 |
| A9 | 53.34 | 64 | 65 | 79 |
| A10 | 58.64 | 50.5 | 69 | 71.5 |
>TRINITY_DN46155_c2_g2_i5 from sample A8 / Example spliced isoformTTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACT
CTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGT
CTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATC
>TRINITY_DN46155_c2_g2_i21 from sample A8 / Example unspliced isoform:TTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGgcccggggctatactcgaacttgtgcgcttcaattgacagagaaacagtacagaaaataaatcgatgaatcgatgaaacaatacagaaaatgaatcgatgatgttggtagcggggatggagatgcgtcgatatcgttagagagaaacgaaactgatgatgcagggaacatca
gcatagcagcaaatgtgggcaggacgcggcacatccatgtacaagcaattttccgacaatttggtgccaaagattgagatttggtgccagatattctccaattgaattttctagcaagaaagatttacagtatgggtataggtgtcacaactattccatgcactcgatggatagctttgtatatgctatgttccacagct
ggtaatagtgtctgttactgagataaacaatggatggaatttgcaaactgggctttggtggacatcgacagcttatcaaataccaactctggagcagaggcaacttaggcaacttttgcgatggcttttgatgctgcaaatgctttacttatgtggcgttattttgacattgcttggaaattaaaaagatacttcaatat
tctgtcagAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTAAGAAAATACCGACACAGTGATTTTGAACTTATATTCTCACATTTTGGTTGTTTGCTAGTGCAGGTACTTATGACCTTGTTTCTCTGTCATTGAC
CTTCAAAACTATTTACAGGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAG
ATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGATCGAGTACCAAAC
TCACTCATGGTCAAGGAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
Intron 2 GTAAGAAAAT ... CTATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.95 | 35.7 | 15 | 17 |
| A2 | 45.87 | 8.9 | 7 | 8 |
| A3 | 29.97 | 12.9 | 5 | 6 |
| A4 | 47.01 | 13.6 | 13 | 11 |
| A5 | 22.58 | 12 | 4 | 3 |
| A6 | 33.8 | 61.3 | 34 | 28 |
| A7 | 28.67 | 79.7 | 30 | 34 |
| A8 | 37.15 | 86.6 | 46 | 56 |
| A9 | 27.42 | 91.4 | 30 | 39 |
| A10 | 30.37 | 71.3 | 35 | 27 |
>TRINITY_DN46913_c0_g1_i21 from sample A10 / Example spliced isoformCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTTGGACGGGGCGACAATTCTCTGAGTCCAGCTGGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAAC
TTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAG
ACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAAT
GGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCCCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGGTAAGACACTTGTGTATCTCTCTTCAAGCATTTAGTTAACATTATCATT
CTTTTGACAGATTGTTGTACATGAGCAATGGTAACACAATTGTGTATCTTCACTCAGGCATTTAGTTAACCTTACACAATATTTTGGCTGATTAGTTTCCATTCGTATTTGTATCTTGTTAATTTTGTTTCTCCTCTTGTGAGCATGTACTGGAATTCGGGTGAGGATATGGAAAAATATCATTTGTATTTGTATCTTGT
TAATTTTGTTTCTCCTCTTGTGAGCATGTACTGGAATTCGGGTGAGGATATGGAAAAATATCATTTGTATTTGTATCTTGTTAATTTTG
>TRINITY_DN46913_c0_g1_i5 from sample A10 / Example unspliced isoform:GACAATTCTCTGAGTCCAGCAGTGGCAAACAATATAGGTCTCCTTCTTAAATGTTTGAACCTTTGCTTTAATGATCTTGGGAACCCAGCTGGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGC
AACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATgtaagaa
aataccgacacagtgattttgaacttatattctcacattttggttgtttgctagtgcaggtacttgaccttgtttctctgtcattgaccttcaaaactatttacagGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGA
GATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCCCAAAGTCTGACACATACAGTATT
GGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGGTAAGACACTTGTGTATCTCTCTTCAAGCATTTAGTTAACATTATCATTCTTTTGACAGATTGTTGTACATGAGCAATGGTAACACAATTGTGTATCTTCACTCAGGCATTTAGTTAACCTTACACAATATTT
TGGCTGATTAGTTTCCATTCGTATTTGTATCTTGTTAATTTTGTTTCTCCTCTTGTGAGCATGTACTGGAATTCGGGTGAGGATATGGAAAAATATCATTTGTATTTGTATCTTGTTAATTTTGTTTCTCCTCTTGTGAGCATGTACTGGAATTCGGGTGAGGATATGGAAAAATATCATTTGTATTTGTATCTTGTTAA
TTTTG
Intron 3 GCCCGGGGCT ... ATTCTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.34 | 23 | 19 | 51 |
| A2 | 55.56 | 14 | 28 | 7 |
| A3 | 60.98 | 16 | 30 | 20 |
| A4 | 64 | 9 | 14 | 18 |
| A5 | 59.18 | 10 | 10 | 19 |
| A6 | 44.53 | 71 | 67 | 47 |
| A7 | 47.6 | 71 | 57 | 72 |
| A8 | 53.79 | 67 | 56 | 100 |
| A9 | 50.16 | 76 | 73 | 80 |
| A10 | 53.26 | 61 | 73 | 66 |
>TRINITY_DN46155_c2_g2_i5 from sample A8 / Example spliced isoformTTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACT
CTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGT
CTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATC
>TRINITY_DN46155_c2_g2_i10 from sample A8 / Example unspliced isoform:TTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGgcccggggctatactcgaacttgtgcgcttcaattgacagagaaacagtacagaaaataaatcgatgaatcgatgaaacaatacagaaaatgaatcgatgatgttggtagcggggatggagatgcgtcgatatcgttagagagaaacgaaactgatgatgcagggaacatca
gcatagcagcaaatgtgggcaggacgcggcacatccatgtacaagcaattttccgacaatttggtgccaaagattgagatttggtgccagatattctccaattgaattttctagcaagaaagatttacagtatgggtataggtgtcacaactattccatgcactcgatggatagctttgtatatgctatgttccacagct
tatcaaataccaactctggagcagaggcaacttaggcaacttttgcgatggcttttgatgctgcaaatgctttacttatgtggcgttattttgacattgcttggaaattaaaaagatacttcaatattctgtcagAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGA
AAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTT
GCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGAT
CGAGTACCAAACTCACTCATGGTCAAGGAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
Intron 4 GTAATTGTGC ... ACATCGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.38 | 31 | 24 | 47 |
| A2 | 52 | 12 | 16 | 10 |
| A3 | 42.27 | 28 | 25 | 16 |
| A4 | 47.54 | 16 | 10 | 19 |
| A5 | 38.89 | 11 | 6 | 8 |
| A6 | 48.68 | 39 | 43 | 31 |
| A7 | 50 | 38 | 27 | 49 |
| A8 | 51.76 | 48 | 38 | 65 |
| A9 | 46.98 | 57 | 54 | 47 |
| A10 | 51.39 | 35 | 24 | 50 |
>TRINITY_DN46155_c2_g2_i10 from sample A8 / Example spliced isoformTTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGGCCCGGGGCTATACTCGAACTTGTGCGCTTCAATTGACAGAGAAACAGTACAGAAAATAAATCGATGAATCGATGAAACAATACAGAAAATGAATCGATGATGTTGGTAGCGGGGATGGAGATGCGTCGATATCGTTAGAGAGAAACGAAACTGATGATGCAGGGAACATCA
GCATAGCAGCAAATGTGGGCAGGACGCGGCACATCCATGTACAAGCAATTTTCCGACAATTTGGTGCCAAAGATTGAGATTTGGTGCCAGATATTCTCCAATTGAATTTTCTAGCAAGAAAGATTTACAGTATGGGTATAGGTGTCACAACTATTCCATGCACTCGATGGATAGCTTTGTATATGCTATGTTCCACAGCT
TATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGA
AAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTT
GCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGAT
CGAGTACCAAACTCACTCATGGTCAAGGAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
>TRINITY_DN46155_c2_g2_i20 from sample A8 / Example unspliced isoform:TTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGGCCCGGGGCTATACTCGAACTTGTGCGCTTCAATTGACAGAGAAACAGTACAGAAAATAAATCGATGAATCGATGAAACAATACAGAAAATGAATCGATGATGTTGGTAGCGGGGATGGAGATGCGTCGATATCGTTAGAGAGAAACGAAACTGATGATGCAGGGAACATCA
GCATAGCAGCAAATGTGGGCAGGACGCGGCACATCCATGTACAAGCAATTTTCCGACAATTTGGTGCCAAAGATTGAGATTTGGTGCCAGATATTCTCCAATTGAATTTTCTAGCAAGAAAGATTTACAGTATGGGTATAGGTGTCACAACTATTCCATGCACTCGATGGATAGCTTTGTATATGCTATGTTCCACAGgt
aattgtgcacccaagataaattaattaatttaaagcattaattcttatacgtagtggacattacattgcatgccaccagctagatcaacgtgtcttatgtgactaacaaaaaagtacatacacgacaccatcatgccaaaataacgatcacaaattgcatgcatgcacctcgacaattgtcacaattgttccatgcactc
gaagtgactcgatggatagcctcctacctgctccacaggtaattgtgcacccgaaacatcttaattaatttaaatgattaattcttataggtggacattacgttgctatccatctccctcttggctcacttcctaacgtctctgctccaacccaactatcattctcctctcccctctgcatcacagttgtgttccatgtt
ccaatctccaagctatttgttaatcatgtatgagctgcacagaaaatgcagcctagggtcggagaatctgttcgactacacggacttctgggagaggaaatgcttcgagggtgaagaaacggatcggcttcgtcatctgctgctattagaaaataacctagtagcagcagaagaatgcgctgccagcgaggaggtctcct
aaacagtcgaacttggtctgtttatataggagatcaaaacagtgaccctctacattgatatcatagcaaacgcctccttgattttagtgattacgtaagtgattccatcaaagtggaaattaaatggatcgatggcattatcctcgtccattatctctgagcaagttgataacaaaccggatcaaacaatttcccctcca
attcgtagggtatctacactattttgggaataaaaaacccttatgtggcacttcaaatacattgtggaaaccaagcattggtgatcagctaagtgcaatgccattgatctctgtgtttatgttcatacaggtcagaccatcagtttttcccatgatctgttctcattgtgcacttgacgcttatcatatctgcacataaa
atgtaagcgtgagactgaaatccattcaaaaaagagaaatgtatttttaaacaaaaaattattataaaagttgaaaaagaaagttaaaagaatttccatttttaactcgatagattcactagatgttctccttttcttggcacaattattgccaaacttttgtaattgtattcatttcgaatgggtaaactgatgacaac
aaggatatctgggttttttcactatacataatattcattatctgggtaaatgatattatcaatgcttactcatccgattggtataacgatcttaacctctttacaaatgttaaaagcattgctacacatccaaactttcaccaaagctacatgtcaaaaatatttatattatacaacagttccttcaaattcattagtat
caataagaagagaagaataataattaagagaatgaatgataaaataataatagggatagtaattttccctttcccactttgatatggtagcgtaacagtgatatgattacacaattattggcggtcttggtggtacgttattttgtggcatataaatctctgtttacatgatggagaggtgattgtttatttcctgtagt
ttcctttccttcgtgattaaccctgtagtggacagctggttaacaaattttaaaatgtgtgatagctatctcttctgcaagtgacatatcttctataaattgtgttgattctagcagtggcaaacaatataggtctccttcttaaatgtttgaacctttgctttaatgatcttgggaacccagctggtaatagtgtctgt
tactgagataaacaatggatggaatttgcaaactgggctttggtggacatcgacagCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCAC
CATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTC
ATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCT
TCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGATCGAGTACCAAACTCACTCATGGTCAAGGAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
Intron 5 GCCCGGGGCT ... TGTTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.78 | 11 | 15 | 10 |
| A2 | 57.81 | 13.7 | 26 | 11 |
| A3 | 66.84 | 11.3 | 24 | 19 |
| A4 | 66.16 | 6.3 | 12 | 12 |
| A5 | 51.72 | 7 | 10 | 5 |
| A6 | 51.19 | 44.3 | 56.3 | 34 |
| A7 | 48.58 | 39.3 | 49 | 25 |
| A8 | 40.46 | 66.7 | 42.7 | 48 |
| A9 | 64.16 | 30 | 62.3 | 42 |
| A10 | 57.17 | 43.3 | 67.7 | 46 |
>TRINITY_DN46155_c2_g2_i3 from sample A8 / Example spliced isoformTTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGCTGGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACAT
TGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCG
GAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTT
TTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATC
>TRINITY_DN46155_c2_g2_i21 from sample A8 / Example unspliced isoform:TTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGgcccggggctatactcgaacttgtgcgcttcaattgacagagaaacagtacagaaaataaatcgatgaatcgatgaaacaatacagaaaatgaatcgatgatgttggtagcggggatggagatgcgtcgatatcgttagagagaaacgaaactgatgatgcagggaacatca
gcatagcagcaaatgtgggcaggacgcggcacatccatgtacaagcaattttccgacaatttggtgccaaagattgagatttggtgccagatattctccaattgaattttctagcaagaaagatttacagtatgggtataggtgtcacaactattccatgcactcgatggatagctttgtatatgctatgttccacagCT
GGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATAT
TCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTAAGAAAATACCGACACAGTGATTTTGAACTTATATTCTCACATTTTGGTTGTTTGCTAGTGCAGGTACTTATGACCTTGTTTCTCTGTCATTGAC
CTTCAAAACTATTTACAGGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAG
ATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGATCGAGTACCAAAC
TCACTCATGGTCAAGGAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
Intron 6 GTAATTGTGC ... GGGAACCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 10 | 24 | 16 |
| A2 | 50 | 11 | 16 | 6 |
| A3 | 48.65 | 19 | 25 | 11 |
| A4 | 41.46 | 12 | 10 | 7 |
| A5 | 47.37 | 5 | 6 | 3 |
| A6 | 47.69 | 34 | 43 | 19 |
| A7 | 45.65 | 25 | 27 | 15 |
| A8 | 42.86 | 48 | 38 | 34 |
| A9 | 44 | 42 | 54 | 12 |
| A10 | 38.26 | 46 | 24 | 33 |
>TRINITY_DN46155_c2_g2_i21 from sample A8 / Example spliced isoformTTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGGCCCGGGGCTATACTCGAACTTGTGCGCTTCAATTGACAGAGAAACAGTACAGAAAATAAATCGATGAATCGATGAAACAATACAGAAAATGAATCGATGATGTTGGTAGCGGGGATGGAGATGCGTCGATATCGTTAGAGAGAAACGAAACTGATGATGCAGGGAACATCA
GCATAGCAGCAAATGTGGGCAGGACGCGGCACATCCATGTACAAGCAATTTTCCGACAATTTGGTGCCAAAGATTGAGATTTGGTGCCAGATATTCTCCAATTGAATTTTCTAGCAAGAAAGATTTACAGTATGGGTATAGGTGTCACAACTATTCCATGCACTCGATGGATAGCTTTGTATATGCTATGTTCCACAGCT
GGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATAT
TCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTAAGAAAATACCGACACAGTGATTTTGAACTTATATTCTCACATTTTGGTTGTTTGCTAGTGCAGGTACTTATGACCTTGTTTCTCTGTCATTGAC
CTTCAAAACTATTTACAGGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAG
ATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGATCGAGTACCAAAC
TCACTCATGGTCAAGGAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
>TRINITY_DN46155_c2_g2_i2 from sample A8 / Example unspliced isoform:TTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGGCCCGGGGCTATACTCGAACTTGTGCGCTTCAATTGACAGAGAAACAGTACAGAAAATAAATCGATGAATCGATGAAACAATACAGAAAATGAATCGATGATGTTGGTAGCGGGGATGGAGATGCGTCGATATCGTTAGAGAGAAACGAAACTGATGATGCAGGGAACATCA
GCATAGCAGCAAATGTGGGCAGGACGCGGCACATCCATGTACAAGCAATTTTCCGACAATTTGGTGCCAAAGATTGAGATTTGGTGCCAGATATTCTCCAATTGAATTTTCTAGCAAGAAAGATTTACAGTATGGGTATAGGTGTCACAACTATTCCATGCACTCGATGGATAGCTTTGTATATGCTATGTTCCACAGgt
aattgtgcacccaagataaattaattaatttaaagcattaattcttatacgtagtggacattacattgcatgccaccagctagatcaacgtgtcttatgtgactaacaaaaaagtacatacacgacaccatcatgccaaaataacgatcacaaattgcatgcatgcacctcgacaattgtcacaattgttccatgcactc
gaagtgactcgatggatagcctcctacctgctccacaggtaattgtgcacccgaaacatcttaattaatttaaatgattaattcttataggtggacattacgttgctatccatctccctcttggctcacttcctaacgtctctgctccaacccaactatcattctcctctcccctctgcatcacagttgtgttccatgtt
ccaatctccaagctatttgttaatcatgtatgagctgcacagaaaatgcagcctagggtcggagaatctgttcgactacacggacttctgggagaggaaatgcttcgagggtgaagaaacggatcggcttcgtcatctgctgctattagaaaataacctagtagcagcagaagaatgcgctgccagcgaggaggtctcct
aaacagtcgaacttggtctgtttatataggagatcaaaacagtgaccctctacattgatatcatagcaaacgcctccttgattttagtgattacgtaagtgattccatcaaagtggaaattaaatggatcgatggcattatcctcgtccattatctctgagcaagttgataacaaaccggatcaaacaatttcccctcca
attcgtagggtatctacactattttgggaataaaaaacccttatgtggcacttcaaatacattgtggaaaccaagcattggtgatcagctaagtgcaatgccattgatctctgtgtttatgttcatacaggtcagaccatcagtttttcccatgatctgttctcattgtgcacttgacgcttatcatatctgcacataaa
atgtaagcgtgagactgaaatccattcaaaaaagagaaatgtatttttaaacaaaaaattattataaaagttgaaaaagaaagttaaaagaatttccatttttaactcgatagattcactagatgttctccttttcttggcacaattattgccaaacttttgtaattgtattcatttcgaatgggtaaactgatgacaac
aaggatatctgggttttttcactatacataatattcattatctgggtaaatgatattatcaatgcttactcatccgattggtataacgatcttaacctctttacaaatgttaaaagcattgctacacatccaaactttcaccaaagctacatgtcaaaaatatttatattatacaacagttccttcaaattcattagtat
caataagaagagaagaataataattaagagaatgaatgataaaataataatagggatagtaattttccctttcccactttgatatggtagcgtaacagtgatatgattacacaattattggcggtcttggtggtacgttattttgtggcatataaatctctgtttacatgatggagaggtgattgtttatttcctgtagt
ttcctttccttcgtgattaaccctgtagtggacagctggttaacaaattttaaaatgtgtgatagctatctcttctgcaagtgacatatcttctataaattgtgttgattctagcagtggcaaacaatataggtctccttcttaaatgtttgaacctttgctttaatgatcttgggaacccagCTGGTAATAGTGTCTGT
TACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCAC
CATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTAAGAAAATACCGACACAGTGATTTTGAACTTATATTCTCACATTTTGGTTGTTTGCTAGTGCAGGTACTTATGACCTTGTTTCTCTGTCATTGACCTTCAAAACTATTTA
CAGGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAAC
TTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGATCGAGTACCAAACTCACTCATGGTCAAG
GAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
Intron 7 GTGAAACCAG ... TTCATGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 18 | 17 | 64 |
| A2 | 75 | 6 | 8 | 28 |
| A3 | 80.49 | 4 | 6 | 27 |
| A4 | 73.58 | 7 | 11 | 28 |
| A5 | 60 | 6 | 3 | 15 |
| A6 | 76.64 | 16 | 28 | 77 |
| A7 | 74.39 | 21 | 34 | 88 |
| A8 | 72.95 | 38 | 56 | 149 |
| A9 | 86.93 | 10 | 39 | 94 |
| A10 | 94.12 | 3 | 27 | 69 |
>TRINITY_DN43632_c2_g1_i9 from sample A9 / Example spliced isoformCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTTGGACGGGGCGACAATTCTCTGAGTCCAGGCCCGGGGCTATACTCGAACTTGTGCGCTTCAATTGACAGAGAAACAGTACAGAAAATAAATCGATGAATCGATGAAACAATACAGAAAATGAA
TCGATGATGTTGGTAGCGGGGATGGAGATGCGTCGATATCGTTAGAGAGAAACGAAACTGATGATGCAGGGAACATCAGCATAGCAGCAAATGTGGGCAGGACGCGGCACATCCATGTACAAGCAATTTTCCGACAATTTGGTGCCAAAGATTGAGATTTGGTGCCAGATATTCTCCAATTGAATTTTCTAGCAAGAAAG
ATTTACAGTATGGGTATAGGTGTCACAACTATTCCATGCACTCGATGGATAGCTTTGTATATGCTATGTTCCACAGGTAATTGTGCACCCAAGATAAATTAATTAATTTAAAGCATTAATTCTTATACGTAGTGGACATTACATTGCATGCCACCAGCTAGATCAACGTGTCTTATGTGACTAACAAAAAAGTACATACA
CGACACCATCATGCCAAAATAACGATCACAAATTGCATGCATGCACCTCGACAATTGTCACAATTGTTCCATGCACTCGAAGTGACTCGATGGATAGCCTCCTACCTGCTCCACAGGTAATTGTGCACCCGAAACATCTTAATTAATTTAAATGATTAATTCTTATAGGTGGACATTACGTTGCTATCCATCTCCCTCTT
GGCTCACTTCCTAACGTCTCTGCTCCAACCCAACTATCATTCTCCTCTCCCCTCTGCATCACAGTTGTGTTCCATGTTCCAATCTCCAAGCTATTTGTTAATCATGTATGAGCTGCACAGAAAATGCAGCCTAGGGTCGGAGAATCTGTTCGACTACACGGACTTCTGGGAGAGGAAATGCTTCGAGGGTGAAGAAACGG
ATCGGCTTCGTCATCTGCTGCTATTAGAAAATAACCTAGTAGCAGCAGAAGAATGCGCTGCCAGCGAGGAGGTCTCCTAAACAGTCGAACTTGGTCTGTTTATATAGGAGATCAAAACAGTGACCCTCTACATTGATATCATAGCAAACGCCTCCTTGATTTTAGTGATTACGTAAGTGATTCCATCAAAGTGGAAATTA
AATGGATCGATGGCATTATCCTCGTCCATTATCTCTGAGCAAGTTGATAACAAACCGGATCAAACAATTTCCCCTCCAATTCGTAGGGTATCTACACTATTTTGGGAATAAAAAACCCTTATGTGGCACTTCAAATACATTGTGGAAACCAAGCATTGGTGATCAGCTAAGTGCAATGCCATTGATCTCTGTGTTTATGT
TCATACAGGTCAGACCATCAGTTTTTCCCATGATCTGTTCTCATTGTGCACTTGACGCTTATCATATCTGCACATAAAATGTAAGCGTGAGACTGAAATCCATTCAAAAAAGAGAAATGTATTTTTAAACAAAAAATTATTATAAAAGTTGAAAAAGAAAGTTAAAAGAATTTCCATTTTTAACTCGATAGATTCACTAG
ATGTTCTCCTTTTCTTGGCACAATTATTGCCAAACTTTTGTAATTGTATTCATTTCGAATGGGTAAACTGATGACAACAAGGATATCTGGGTTTTTTCACTATACATAATATTCATTATCTGGGTAAATGATATTATCAATGCTTACTCATCCGATTGGTATAACGATCTTAACCTCTTTACAAATGTTAAAAGCATTGC
TACACATCCAAACTTTCACCAAAGCTACATGTCAAAAATATTTATATTATACAACAGTTCCTTCAAATTCATTAGTATCAATAAGAAGAGAAGAATAATAATTAAGAGAATGAATGATAAAATAATAATAGGGATAGTAATTTTCCCTTTCCCACTTTGATATGGTAGCGTAACAGTGATATGATTACACAATTATTGGC
GGTCTTGGTGGTACGTTATTTTGTGGCATATAAATCTCTGTTTACATGATGGAGAGGTGATTGTTTATTTCCTGTAGTTTCCTTTCCTTCGTGATTAACCCTGTAGTGGACAGCTGGTTAACAAATTTTAAAATGTGTGATAGCTATCTCTTCTGCAAGTGACATATCTTCTATAAATTGTGTTGATTCTAGCAGTGGCA
AACAATATAGGTCTCCTTCTTAAATGTTTGAACCTTTGCTTTAATGATCTTGGGAACCCAGCTGGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGC
AAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTAAGAAAATACCGACACAGTGATTTTGAACTTA
TATTCTCACATTTTGGTTGTTTGCTAGTGCAGGTACTTATGACCTTGTTTCTCTGTCATTGACCTTCAAAACTATTTACAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGT
GTGACCATTGAAGAATCGATCAGTATGTTTTCCCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGGTAAGACACTTGTGTATCTCTCTTCAAGCATTTAGTTAACATTATCATTCTTTTGACAGATTGTTGTACATGAGCAA
TGGTAACACAATTGTGTATCTTCACTCAGGCATTTAGTTAACCTTACACAATATTTTGGCTGATTAGTTTCCATTCGTATTTGTATCTTGTTAATTTTGTTTCTCCTCTTGTGAGCATGTACTGGAATTCGGGTGAGGATATGGAAAAATA
>TRINITY_DN43632_c2_g1_i13 from sample A9 / Example unspliced isoform:CTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTTGGACGGGGCGACAATTCTCTGAGTCCAGGCCCGGGGCTATACTCGAACTTGTGCGCTTCAATTGACAGAGAAACAGTACAGAAAATAAATCGATGAATCGATGAAACAATACAGAAAATGAA
TCGATGATGTTGGTAGCGGGGATGGAGATGCGTCGATATCGTTAGAGAGAAACGAAACTGATGATGCAGGGAACATCAGCATAGCAGCAAATGTGGGCAGGACGCGGCACATCCATGTACAAGCAATTTTCCGACAATTTGGTGCCAAAGATTGAGATTTGGTGCCAGATATTCTCCAATTGAATTTTCTAGCAAGAAAG
ATTTACAGTATGGGTATAGGTGTCACAACTATTCCATGCACTCGATGGATAGCTTTGTATATGCTATGTTCCACAGGTAATTGTGCACCCAAGATAAATTAATTAATTTAAAGCATTAATTCTTATACGTAGTGGACATTACATTGCATGCCACCAGCTAGATCAACGTGTCTTATGTGACTAACAAAAAAGTACATACA
CGACACCATCATGCCAAAATAACGATCACAAATTGCATGCATGCACCTCGACAATTGTCACAATTGTTCCATGCACTCGAAGTGACTCGATGGATAGCCTCCTACCTGCTCCACAGGTAATTGTGCACCCGAAACATCTTAATTAATTTAAATGATTAATTCTTATAGGTGGACATTACGTTGCTATCCATCTCCCTCTT
GGCTCACTTCCTAACGTCTCTGCTCCAACCCAACTATCATTCTCCTCTCCCCTCTGCATCACAGTTGTGTTCCATGTTCCAATCTCCAAGCTATTTGTTAATCATGTATGAGCTGCACAGAAAATGCAGCCTAGGGTCGGAGAATCTGTTCGACTACACGGACTTCTGGGAGAGGAAATGCTTCGAGGGTGAAGAAACGG
ATCGGCTTCGTCATCTGCTGCTATTAGAAAATAACCTAGTAGCAGCAGAAGAATGCGCTGCCAGCGAGGAGGTCTCCTAAACAGTCGAACTTGGTCTGTTTATATAGGAGATCAAAACAGTGACCCTCTACATTGATATCATAGCAAACGCCTCCTTGATTTTAGTGATTACGTAAGTGATTCCATCAAAGTGGAAATTA
AATGGATCGATGGCATTATCCTCGTCCATTATCTCTGAGCAAGTTGATAACAAACCGGATCAAACAATTTCCCCTCCAATTCGTAGGGTATCTACACTATTTTGGGAATAAAAAACCCTTATGTGGCACTTCAAATACATTGTGGAAACCAAGCATTGGTGATCAGCTAAGTGCAATGCCATTGATCTCTGTGTTTATGT
TCATACAGGTCAGACCATCAGTTTTTCCCATGATCTGTTCTCATTGTGCACTTGACGCTTATCATATCTGCACATAAAATGTAAGCGTGAGACTGAAATCCATTCAAAAAAGAGAAATGTATTTTTAAACAAAAAATTATTATAAAAGTTGAAAAAGAAAGTTAAAAGAATTTCCATTTTTAACTCGATAGATTCACTAG
ATGTTCTCCTTTTCTTGGCACAATTATTGCCAAACTTTTGTAATTGTATTCATTTCGAATGGGTAAACTGATGACAACAAGGATATCTGGGTTTTTTCACTATACATAATATTCATTATCTGGGTAAATGATATTATCAATGCTTACTCATCCGATTGGTATAACGATCTTAACCTCTTTACAAATGTTAAAAGCATTGC
TACACATCCAAACTTTCACCAAAGCTACATGTCAAAAATATTTATATTATACAACAGTTCCTTCAAATTCATTAGTATCAATAAGAAGAGAAGAATAATAATTAAGAGAATGAATGATAAAATAATAATAGGGATAGTAATTTTCCCTTTCCCACTTTGATATGGTAGCGTAACAGTGATATGATTACACAATTATTGGC
GGTCTTGGTGGTACGTTATTTTGTGGCATATAAATCTCTGTTTACATGATGGAGAGGTGATTGTTTATTTCCTGTAGTTTCCTTTCCTTCGTGATTAACCCTGTAGTGGACAGCTGGTTAACAAATTTTAAAATGTGTGATAGCTATCTCTTCTGCAAGTGACATATCTTCTATAAATTGTGTTGATTCTAGCAGTGGCA
AACAATATAGGTCTCCTTCTTAAATGTTTGAACCTTTGCTTTAATGATCTTGGGAACCCAGCTGGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGC
AAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTAAGAAAATACCGACACAGTGATTTTGAACTTA
TATTCTCACATTTTGGTTGTTTGCTAGTGCAGGTACTTATGACCTTGTTTCTCTGTCATTGACCTTCAAAACTATTTACAGgtgaaaccagacatactttcacccggacatactgtctcgttttattgcattaactgagaaccaaccggagaattactctgacaagtatctaagagatattattctaaatttcatgatag
CTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCCCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCA
GCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGGTAAGACACTTGTGTATCTCTCTTCAAGCATTTAGTTAACATTATCATTCTTTTGACAGATTGTTGTACATGAGCAATGGTAACACAATTGTGTATCTTCACTCAGGCATTTAGTTAACCTTACACAATATTTTGGCTGATTAGTTTCCATTCGTATT
TGTATCTTGTTAATTTTGTTTCTCCTCTTGTGAGCATGTACTGGAATTCGGGTGAGGATATGGAAAAATA
Intron 8 GTAAGAAAAT ... CTATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.23 | 35.2 | 15.2 | 18.3 |
| A2 | 46.31 | 8.7 | 6.8 | 8.2 |
| A3 | 31.09 | 12.6 | 5 | 6.4 |
| A4 | 47.96 | 12.9 | 12.3 | 11.4 |
| A5 | 22.47 | 12.1 | 4 | 3 |
| A6 | 34.76 | 56.7 | 31.6 | 28.2 |
| A7 | 29.04 | 77.5 | 28.6 | 34.8 |
| A8 | 37.96 | 82.5 | 44 | 56.4 |
| A9 | 27.32 | 88.8 | 27.8 | 39 |
| A10 | 30.1 | 68.4 | 32.1 | 27 |
>TRINITY_DN117437_c6_g1_i12 from sample A1 / Example spliced isoformAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTTGGACGGGGCGACAATTCTCTGAGTCCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACAC
TAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGTCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAA
AAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCCCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGATCATGGCAATTGATGACCCTATACATGATGA
TCCAAACTATGTTGAGCCTACTTCAGATATAGGAGATGATGATGATGACGATGATGATGATGGTGATGGTGATGGGGTTTATCAAGATGGCGA
>TRINITY_DN117437_c6_g1_i5 from sample A1 / Example unspliced isoform:AGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTTGGACGGGGCGACAATTCTCTGAGTCCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACAC
TAACTATgtaagaaaataccgacacagtgattttgaacttatattctcacattttggttgtttgctagtgcaggtacttatgaccttgtttctctgtcattgaccttcaaaactatttacagGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTC
TGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGTCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCCCAAAGTC
TGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGATCATGGCAATTGATGACCCTATACATGATGATCCAAACTATGTTGAGCCTACTTCAGATATAGGAGATGATGATGATGACGATGATGATGATGGTGATGGTGATGGGGTTTATCAA
GATGGCGA
Intron 9 GTAGGGTTTG ... GTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.52 | 11 | 18 | 22 |
| A2 | 68 | 4 | 15 | 2 |
| A3 | 62.5 | 3 | 8 | 2 |
| A4 | 84.62 | 1 | 6 | 5 |
| A5 | 52 | 6 | 10 | 3 |
| A6 | 40 | 3 | 3 | 1 |
| A7 | 82.86 | 3 | 15 | 14 |
| A8 | 69.23 | 2 | 3 | 6 |
| A9 | 60 | 3 | 7 | 2 |
| A10 | 45.16 | 17 | 22 | 6 |
>TRINITY_DN44068_c3_g2_i1 from sample A7 / Example spliced isoformTCAAAATGTCTGAAAATAGGACGGCCTTGGTCTAACCCTTGCAATGGGATCACAGAGACTGCGAATGCTAATGTCAATTTTTTTGGGCAGCGGACTGTCCTTGTGGATGGCAATACATTGCTAGGAGCGGGACTCAGCTGAAGGTTATAGAAGAGAATTTAAAACAGAGACAGAAGAGGGTAGAGTTCATTGAGCTTGCT
CCATTTTTATTACTCTTCGCAACCAAATTCCATGGATTGTAGTAGCAGCATCACAGAAGCAGTAACAGCACCACAGTTTCCACCAATGGCTTCTCTGTATGTGGGCGATCTAGAACCAGATGTTACAGACGACCAGCTTGTTGAGCGCTTCGAGCTTATGGGAAGCGTCCCCTCTGTTCGAGTCTTCCGCGATAGCATGA
CCCAACGCTCCCTTGGCTATGGATACGTCAGTTATTTTGACCCAAAATACGACGGCCTTGGTCTAACCCTTGAAGATGGGATCACAGGCAGTGGTTCACACTACATTGCACAGTAGGTATGGCGGACTAATAGAGATCGCAGGGTCCTTGATGACATCATGCCAGAAGTAATTATTGATAATATAGTTATCTTCAACTTC
GAATAAGGTGTTTACATCCACTGTCACACATCCGGGAATGGCCCTAGGGTTTCTAGAATTTTTTTTTTCCCGGATCACTATCTCAAGCATTTCCCCTCTTGTTCCATCACAAAAAGCTGAGCACCCTCTACTACTCCATTAATTATAGCACCACCCATTTTACTTTGAGTTCCCCAACCTCTGTAGACTCTGACTTTGAT
GGATGCAGGGGCATTGATACTTCCCTCGACCGCCAACCGATAGGTAGGGCATTTATCCACTCGATTTTTATGGTGAAAGAAGATGCTGCGTGGTGTAGGTGCATCAATCTGGGTCGGGAGGGAAACTGTGGTTCCTTCTCATCGATTGAATTTGAATTCGAATTCTTTAACAAATTCAACAGAGCAACAGAGGTGGACGA
GAAACCCAAGAAATTTTGTAACACCAAGACAAGAATAATGCCCGAGAGAGAAATTTCTCAATGAAGACAAGAAGTTGTATTCGTGGGAGGACCGCCTCAAGCGCATCAAGAGGAGTAGAATCTTCAGAATCCATTCCTTAGAGAAATCACGTTGATGGCGAGCTGTGGAGACAACAGCGGAAATTAGCTAGTTTCGAATT
CTCCACCAAAGTGGTGAAGGACTTCAGTAGTGTTATTTTTCGGGAGAATGCCGTGAAACTTTCCAAAATTCTACTGGAATCTTATCGAACAAAGAAAACAGTAGAGATGTAGGCATGTTAAATCATTCACTCAGCTCATAAGCTGTGAAAATTTTGTAATTAGAATTGCATTTCTTGATCTCCCTTGTGTGAATACTCTA
TGCCTAGAGCACGATGCAGAATCATATTAGGAATTAACAGGAACTATACTGTCTTATGGATAAATGGCAATATGGTCTATTACTGAGATCAACAATGGATGGATTCTGCAAACTGGGCTTTGGGGTGGACATCAACAGCTTATCAAAGACCAACTCTAGAGCAGAGGCAACTTTTGCGATGGCTTTTGATACTGCAAATG
CTTTACTTATGTGGCGTTATTTTGACGTTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATAACATCAAAATGGTGGATGATTTTGTCTATAAAGTCATTCAGAGCAAAAAACATGAGATTTCTATCCAGAATAACTATGTAAGAGAATACCCATACCGGCCTTGGTCTTGATTTGGA
ACTTATCTTCTCACATTTTAGCTGTCTGCTAGTGTAGGTACTTATGACCTTGTTTCTCTGTCATTGACCTTCAAGTCTATTCACAGGTGAAACCAGACATACTGTCTCGTTTTATTGCATTAACTGAGAAACAACCAGACAATTACTCTGACAAGTTTCTAAGAGATATTATTCTAAATTTCATGATAGCTGGTCGGGAC
ACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGAATCCGGATGTTGAAAAAAGGCTTGTTCAAGAAATTCAGGACCTGGTTAAGGAGGATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGTATAAGATGCACTATCTTCATGCAGCTTTATCAGA
GACCTTACGCTTATACCCAGCCGTTCCTCTGGTAAGA
>TRINITY_DN44068_c3_g2_i8 from sample A7 / Example unspliced isoform:TCAAAATGTCTGAAAATAGGACGGCCTTGGTCTAACCCTTGCAATGGGATCACAGAGACTGCGAATGCTAATGTCAATTTTTTTGGGCAGCGGACTGTCCTTGTGGATGGCAATACATTGCTAGGAGCGGGACTCAGCTGAAGGTTATAGAAGAGAATTTAAAACAGAGACAGAAGAGGGTAGAGTTCATTGAGCTTGCT
CCATTTTTATTACTCTTCGCAACCAAATTCCATGGATTGTAGTAGCAGCATCACAGAAGCAGTAACAGCACCACAGTTTCCACCAATGGCTTCTCTGTATGTGGGCGATCTAGAACCAGATGTTACAGACGACCAGCTTGTTGAGCGCTTCGAGCTTATGGGAAGCGTCCCCTCTGTTCGAGTCTTCCGCGATAGCATGA
CCCAACGCTCCCTTGGCTATGGATACGTCAGTTATTTTGACCCAAAATACGACGGCCTTGGTCTAACCCTTGAAGATGGGATCACAGGCAGTGGTTCACACTACATTGCACAGTAGGTATGGCGGACTAATAGAGATCGCAGGGTCCTTGATGACATCATGCCAGAAGTAATTATTGATAATATAGTTATCTTCAACTTC
GAATAAGGTGTTTACATCCACTGTCACACATCCGGGAATGGCCCTAGGGTTTCTAGAATTTTTTTTTTCCCGGATCACTATCTCAAGCATTTCCCCTCTTGTTCCATCACAAAAAGCTGAGCACCCTCTACTACTCCATTAATTATAGCACCACCCATTTTACTTTGAGTTCCCCAACCTCTGTAGACTCTGACTTTGAT
GGATGCAGGGGCATTGATACTTCCCTCGACCGCCAACCGATAGGTAGGGCATTTATCCACTCGATTTTTATGGTGAAAGAAGATGCTGCGTGGTGTAGGTGCATCAATCTGGGTCGGGAGGGAAACTGTGGTTCCTTCTCATCGATTGAATTTGAATTCGAATTCTTTAACAAATTCAACAGAGCAACAGAGGTGGACGA
GAAACCCAAGAAATTTTGTAACACCAAGACAAGAATAATGCCCGAGAGAGAAATTTCTCAATGAAGACAAGAAGTTGTATTCGTGGGAGGACCGCCTCAAGCGCATCAAGAGGAGTAGAATCTTCAGAATCCATTCCTTAGAGAAATCAgtagggtttgaacagcttttccaaagattttagatattttcaaatttccat
tgcttgtgaaggttaggccaaaagagaaattccttcatgctataaaaaataagtggatgcttaattttcctgttttgaaatttcaatggaaaatttgcataatacttgtaattttgccctaatttttctgtcttgaaagaatcttcagtgtccatgcctcatagaaattggtagggtatgaacaacttttcatagaaatt
gatagggtatgaacaacttttcatatttttttagggtattttcagCGTTGATGGCGAGCTGTGGAGACAACAGCGGAAATTAGCTAGTTTCGAATTCTCCACCAAAGTGGTGAAGGACTTCAGTAGTGTTATTTTTCGGGAGAATGCCGTGAAACTTTCCAAAATTCTACTGGAATCTTATCGAACAAAGAAAACAGTAG
AGATGTAGGCATGTTAAATCATTCACTCAGCTCATAAGCTGTGAAAATTTTGTAATTAGAATTGCATTTCTTGATCTCCCTTGTGTGAATACTCTATGCCTAGAGCACGATGCAGAATCATATTAGGAATTAACAGGAACTATACTGTCTTATGGATAAATGGCAATATGGTCTATTACTGAGATCAACAATGGATGGAT
TCTGCAAACTGGGCTTTGGGGTGGACATCAACAGCTTATCAAAGACCAACTCTAGAGCAGAGGCAACTTTTGCGATGGCTTTTGATACTGCAAATGCTTTACTTATGTGGCGTTATTTTGACGTTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATAACATCAAAATGGTGGATGAT
TTTGTCTATAAAGTCATTCAGAGCAAAAAACATGAGATTTCTATCCAGAATAACTATGTAAGAGAATACCCATACCGGCCTTGGTCTTGATTTGGAACTTATCTTCTCACATTTTAGCTGTCTGCTAGTGTAGGTACTTATGACCTTGTTTCTCTGTCATTGACCTTCAAGTCTATTCACAGGTGAAACCAGACATACTG
TCTCGTTTTATTGCATTAACTGAGAAACAACCAGACAATTACTCTGACAAGTTTCTAAGAGATATTATTCTAAATTTCATGATAGCTGGTCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGAATCCGGATGTTGAAAAAAGGCTTGTTCAAGAAATTCAGGACCTGGTTAAGGAGGATGA
ATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGTATAAGATGCACTATCTTCATGCAGCTTTATCAGAGACCTTACGCTTATACCCAGCCGTTCCTCTGGTAAGA
Intron 10 GCCCGGGGCT ... ATTCTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.61 | 20 | 16 | 50.5 |
| A2 | 58.9 | 12 | 26.5 | 7.5 |
| A3 | 68.45 | 11.5 | 25.5 | 21.5 |
| A4 | 68.05 | 7.5 | 12.5 | 19 |
| A5 | 57.85 | 10 | 10 | 17.5 |
| A6 | 48.66 | 57 | 59 | 46 |
| A7 | 49.14 | 63.5 | 51 | 71 |
| A8 | 56.12 | 57 | 46 | 98 |
| A9 | 53.33 | 64 | 65 | 79 |
| A10 | 58.63 | 50.5 | 69 | 71.5 |
>TRINITY_DN46155_c2_g2_i5 from sample A8 / Example spliced isoformTTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACT
CTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGT
CTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATC
>TRINITY_DN46155_c2_g2_i20 from sample A8 / Example unspliced isoform:TTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGgcccggggctatactcgaacttgtgcgcttcaattgacagagaaacagtacagaaaataaatcgatgaatcgatgaaacaatacagaaaatgaatcgatgatgttggtagcggggatggagatgcgtcgatatcgttagagagaaacgaaactgatgatgcagggaacatca
gcatagcagcaaatgtgggcaggacgcggcacatccatgtacaagcaattttccgacaatttggtgccaaagattgagatttggtgccagatattctccaattgaattttctagcaagaaagatttacagtatgggtataggtgtcacaactattccatgcactcgatggatagctttgtatatgctatgttccacaggt
aattgtgcacccaagataaattaattaatttaaagcattaattcttatacgtagtggacattacattgcatgccaccagctagatcaacgtgtcttatgtgactaacaaaaaagtacatacacgacaccatcatgccaaaataacgatcacaaattgcatgcatgcacctcgacaattgtcacaattgttccatgcactc
gaagtgactcgatggatagcctcctacctgctccacaggtaattgtgcacccgaaacatcttaattaatttaaatgattaattcttataggtggacattacgttgctatccatctccctcttggctcacttcctaacgtctctgctccaacccaactatcattctcctctcccctctgcatcacagttgtgttccatgtt
ccaatctccaagctatttgttaatcatgtatgagctgcacagaaaatgcagcctagggtcggagaatctgttcgactacacggacttctgggagaggaaatgcttcgagggtgaagaaacggatcggcttcgtcatctgctgctattagaaaataacctagtagcagcagaagaatgcgctgccagcgaggaggtctcct
aaacagtcgaacttggtctgtttatataggagatcaaaacagtgaccctctacattgatatcatagcaaacgcctccttgattttagtgattacgtaagtgattccatcaaagtggaaattaaatggatcgatggcattatcctcgtccattatctctgagcaagttgataacaaaccggatcaaacaatttcccctcca
attcgtagggtatctacactattttgggaataaaaaacccttatgtggcacttcaaatacattgtggaaaccaagcattggtgatcagctaagtgcaatgccattgatctctgtgtttatgttcatacaggtcagaccatcagtttttcccatgatctgttctcattgtgcacttgacgcttatcatatctgcacataaa
atgtaagcgtgagactgaaatccattcaaaaaagagaaatgtatttttaaacaaaaaattattataaaagttgaaaaagaaagttaaaagaatttccatttttaactcgatagattcactagatgttctccttttcttggcacaattattgccaaacttttgtaattgtattcatttcgaatgggtaaactgatgacaac
aaggatatctgggttttttcactatacataatattcattatctgggtaaatgatattatcaatgcttactcatccgattggtataacgatcttaacctctttacaaatgttaaaagcattgctacacatccaaactttcaccaaagctacatgtcaaaaatatttatattatacaacagttccttcaaattcattagtat
caataagaagagaagaataataattaagagaatgaatgataaaataataatagggatagtaattttccctttcccactttgatatggtagcgtaacagtgatatgattacacaattattggcggtcttggtggtacgttattttgtggcatataaatctctgtttacatgatggagaggtgattgtttatttcctgtagt
ttcctttccttcgtgattaaccctgtagtggacagctggttaacaaattttaaaatgtgtgatagctatctcttctgcaagtgacatatcttctataaattgtgttgattctagcagtggcaaacaatataggtctccttcttaaatgtttgaacctttgctttaatgatcttgggaacccagctggtaatagtgtctgt
tactgagataaacaatggatggaatttgcaaactgggctttggtggacatcgacagcttatcaaataccaactctggagcagaggcaacttaggcaacttttgcgatggcttttgatgctgcaaatgctttacttatgtggcgttattttgacattgcttggaaattaaaaagatacttcaatattctgtcagAGGCCAC
CATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTC
ATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCT
TCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGATCGAGTACCAAACTCACTCATGGTCAAGGAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
Intron 11 GCCCGGGGCT ... GGGAACCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.78 | 12 | 16 | 16 |
| A2 | 53.18 | 14.5 | 26.5 | 6 |
| A3 | 59.96 | 13 | 25.5 | 11 |
| A4 | 59.07 | 7 | 12.5 | 7 |
| A5 | 48.15 | 7 | 10 | 3 |
| A6 | 45.33 | 48.5 | 59 | 19 |
| A7 | 44.67 | 41 | 51 | 15 |
| A8 | 36.63 | 69 | 46 | 34 |
| A9 | 54.63 | 33 | 65 | 12 |
| A10 | 52.8 | 46.5 | 69 | 33 |
>TRINITY_DN46155_c2_g2_i3 from sample A8 / Example spliced isoformTTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGCTGGTAATAGTGTCTGTTACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACAT
TGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCACCATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCG
GAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAACTTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTT
TTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATC
>TRINITY_DN46155_c2_g2_i2 from sample A8 / Example unspliced isoform:TTTTGCATGGAAATATAAATCTATTGACACCAAAACCGTCGGAGTGACAGCTGTCGTCCTCCCAAATAAATCCAAATATAAAATATTTTGAAACCCACAAAGAAAAGCGAGTTTTCAGAACTCTCAATCCGTGCCGATTTCCTCAGGATGAGTAGCTCGATCCATCATCGAAAGGCAGTTCATTCGCGTTGCAAGGTTTT
GGACGGGGCGACAATTCTCTGAGTCCAGgcccggggctatactcgaacttgtgcgcttcaattgacagagaaacagtacagaaaataaatcgatgaatcgatgaaacaatacagaaaatgaatcgatgatgttggtagcggggatggagatgcgtcgatatcgttagagagaaacgaaactgatgatgcagggaacatca
gcatagcagcaaatgtgggcaggacgcggcacatccatgtacaagcaattttccgacaatttggtgccaaagattgagatttggtgccagatattctccaattgaattttctagcaagaaagatttacagtatgggtataggtgtcacaactattccatgcactcgatggatagctttgtatatgctatgttccacaggt
aattgtgcacccaagataaattaattaatttaaagcattaattcttatacgtagtggacattacattgcatgccaccagctagatcaacgtgtcttatgtgactaacaaaaaagtacatacacgacaccatcatgccaaaataacgatcacaaattgcatgcatgcacctcgacaattgtcacaattgttccatgcactc
gaagtgactcgatggatagcctcctacctgctccacaggtaattgtgcacccgaaacatcttaattaatttaaatgattaattcttataggtggacattacgttgctatccatctccctcttggctcacttcctaacgtctctgctccaacccaactatcattctcctctcccctctgcatcacagttgtgttccatgtt
ccaatctccaagctatttgttaatcatgtatgagctgcacagaaaatgcagcctagggtcggagaatctgttcgactacacggacttctgggagaggaaatgcttcgagggtgaagaaacggatcggcttcgtcatctgctgctattagaaaataacctagtagcagcagaagaatgcgctgccagcgaggaggtctcct
aaacagtcgaacttggtctgtttatataggagatcaaaacagtgaccctctacattgatatcatagcaaacgcctccttgattttagtgattacgtaagtgattccatcaaagtggaaattaaatggatcgatggcattatcctcgtccattatctctgagcaagttgataacaaaccggatcaaacaatttcccctcca
attcgtagggtatctacactattttgggaataaaaaacccttatgtggcacttcaaatacattgtggaaaccaagcattggtgatcagctaagtgcaatgccattgatctctgtgtttatgttcatacaggtcagaccatcagtttttcccatgatctgttctcattgtgcacttgacgcttatcatatctgcacataaa
atgtaagcgtgagactgaaatccattcaaaaaagagaaatgtatttttaaacaaaaaattattataaaagttgaaaaagaaagttaaaagaatttccatttttaactcgatagattcactagatgttctccttttcttggcacaattattgccaaacttttgtaattgtattcatttcgaatgggtaaactgatgacaac
aaggatatctgggttttttcactatacataatattcattatctgggtaaatgatattatcaatgcttactcatccgattggtataacgatcttaacctctttacaaatgttaaaagcattgctacacatccaaactttcaccaaagctacatgtcaaaaatatttatattatacaacagttccttcaaattcattagtat
caataagaagagaagaataataattaagagaatgaatgataaaataataatagggatagtaattttccctttcccactttgatatggtagcgtaacagtgatatgattacacaattattggcggtcttggtggtacgttattttgtggcatataaatctctgtttacatgatggagaggtgattgtttatttcctgtagt
ttcctttccttcgtgattaaccctgtagtggacagctggttaacaaattttaaaatgtgtgatagctatctcttctgcaagtgacatatcttctataaattgtgttgattctagcagtggcaaacaatataggtctccttcttaaatgtttgaacctttgctttaatgatcttgggaacccagCTGGTAATAGTGTCTGT
TACTGAGATAAACAATGGATGGAATTTGCAAACTGGGCTTTGGTGGACATCGACAGCTTATCAAATACCAACTCTGGAGCAGAGGCAACTTAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATACTTCAATATTCTGTCAGAGGCCAC
CATGAAGGATCACATCAAAACGGTGGATGATTTTTCCTATAAGGTCATTCAGAGCAGAAAACAGGAAATTTCTCTCTACACTAACTATGTAAGAAAATACCGACACAGTGATTTTGAACTTATATTCTCACATTTTGGTTGTTTGCTAGTGCAGGTACTTATGACCTTGTTTCTCTGTCATTGACCTTCAAAACTATTTA
CAGGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAACCAACCGGAGAATTACTCTGACAAGTATCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAGGATCCAGATGTTGAAAAAAAAC
TTGTGCAAGAAATGGAGGACCTGGTCAAGGAGAATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCTCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCGGAGACCTTAGGCTTATACCCAGTTGTTCCGCTGAATAGAGATCGAGTACCAAACTCACTCATGGTCAAG
GAGAAACCCAAGTGTGGTGAATAGAGAGAGTCAAGTTGGGCTTGTGGCTAAG
Intron 12 GTTGACACGC ... TGTTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.33 | 1 | 7 | 3 |
| A2 | 50 | 10 | 7 | 13 |
| A3 | 100 | 0 | 6 | 11 |
| A4 | 100 | 0 | 6 | 5 |
| A5 | 100 | 0 | 5 | 1 |
| A6 | 50 | 2 | 3 | 1 |
| A7 | 92 | 1 | 23 | 0 |
| A8 | 100 | 0 | 4 | 1 |
| A9 | 50 | 1 | 1 | 1 |
| A10 | 46.67 | 4 | 6 | 1 |
>TRINITY_DN46913_c0_g1_i4 from sample A10 / Example spliced isoformCTTGATGACATCATGCCAGAAGTAATTATTGATAATATAGTTATCTTCAACTTCGAATAAGGTGTTTACATCCACTGTCACACATCCGGGAATGGCCCTAGGGTTTCTAGAATTTTTTTTTTCCCGGATCACTATCTCAAGCATTTCCCCTCTTGTTCCATCACAAAAAGCTGAGCACCCTCTACTACTCCATTAATTAT
AGCACCACCCATTTTACTTTGAGTTCCCCAACCTCTGTAGACTCTGACTTTGATGGATGCAGGGGCATTGATACTTCCCTCGACCGCCAACCGATAGGTAGGGCATTTATCCACTCGATTTTTATGGTGAAAGAAGATGCTGCGTGGTGTAGGTGCATCAATCTGGGTCGGGAGGGAAACTGTGGTTCCTTCTCATCGAT
TGAATTTGAATTCGAATTCTTTAACAAATTCAACAGAGCAACAGAGGTGGACGAGAAACCCAAGAAATTTTGTAACACCAAGACAAGAATAATGCCCGAGAGAGAAATTTCTCAATGAAGACAAGAAGTTGTATTCGTGGGAGGACCGCCTCAAGCGCATCAAGAGGAGTAGAATCTTCAGAATCCATTCCTTAGAGAAA
TCAGTAGGGTTTGAACAGCTTTTCCAAAGATTTTAGATATTTTCAAATTTCCATTGCTTGTGAAGGTTAGGCCAAAAGAGAAATTCCTTCATGCTATAAAAAATAAGTGGATGCTTAATTTTCCTGTTTTGAAATTTCAATGGAAAATTTGCATAATACTTGTAATTTTGCCCTAATTTTTCTGTCTTGAAAGAATCTTC
AGTGTCCATGCCTCATAGAAATTGGTAGGGTATGAACAACTTTTCATAGAAATTGATAGGGTATGAACAACTTTTCATATTTTTTTAGGGTATTTTCAGCGTTGATGGCGAGCTGTGGAGACAACAGCGGAAATTAGCTAGTTTCGAATTCTCCACCAAAGTGGTGAAGGACTTCAGTAGTGTTATTTTTCGGGAGAATG
CCGTGAAACTTTCCAAAATTCTACTGGAAGCTTATCGAACAAAGAAAACAGTAGAGATGTAGGCATGTTAAATCATTCACTCAGCTCATAAGCTGTGAAAATTTTGTAATTAGAATTGCATTTCTTGATCTCCCTTGTGTGAATACTCTATGCCTAGAGCACGATGCAGAATCATATTAGGAATTAACAGGAACTATACT
GTCTTATGGATAAATGGCAATATGGTCTATTACTGAGATCAACAATGGATGGATTCTGCAAACTGGGCTTTGGGGTGGACATCAACAGCTTATCAAAGACCAACTCTAGAGCAGAGGCAACTTTTGCGATGGCTTTTGATGCTGCAAATGCTTTACTTATGTGGCGTTATTTTGACATTGCTTGGAAATTAAAAAGATAC
TTCAATATTCTGTCAGAGGCCACCATGAAGGATAACATCAAAATGGTGGATGATTTTGTCTATAAAGTCATTCAGAGCAAAAAACATGAGATTTCTATCCAGAATAACTATGTAAGAGAATACCCATACCGGCCTTGGTCTTGATTTGGAACTTATCTTCTCACATTTTAGCTGTCTGCTAGTGTAGGTACTTATGACCT
TGTTTCTCTGTCATTGACCTTCAAAACTATTTACAGGTGAAACCAGACATACTTTCACCCGGACATACTGTCTCGTTTTATTGCATTAACTGAGAAACAACCAGACAATTACTCTGACAAGTTTCTAAGAGATATTATTCTAAATTTCATGATAGCTGGCCGGGACACAACTGCAGTTACCCTTTGTTGGTTTTTTCATT
TGCTTTGCAAGAATCCGGATGTTGAAAAAAGGCTTGTTCAAGAAATTCAGGACCTGGTTAAGGAGGATGAATGTGTGACCATTGAAGAATCGATCAGTATGTTTTCCCAAAGTCTGACACATACAGTATTGGATAAGATGCACTATCTTCATGCAGCTTTATCAGAGACCTTACGCTTATACCCAGCCGTTCCTCTGCCT
GTAAATTGCTGAGAAGACGTTGTACACATGAATGCTTTTTTGCTCCTTATTTTCCTCCAGAAGAGCCCTAGAAATCTGTTTGTCCTTAGAATTTTTGGGGCCAACAATGTGCACAGGTTGACACGCATCAACTCTCTCTCTCTCAAAGGGTTGTAGCTTGTGGGAGATATTGTGGGATTGATCGAGTAAGAGAGAATTCT
GGTGCAAGTGTGGTTCCGATCTTGTGCAGGCACCACTAGCAACTTCTGGCATAGCTTCAGCTGCAACCTTACATCC
>TRINITY_DN46913_c0_g1_i3 from sample A10 / Example unspliced isoform:GGTTAATGAAATATTTTGAGCTAGTGTTATTGTCTAATTTTTGTTTTGGTCCATTGTTGCCAAATTCTTTAGAACCGACTTCTCAAGAAAACGGGGACACAACAAAAAGTTTTGGCTTTGAAGGGCATGCAACTAGACTCTAGTAGAATAGGTGGATTCATAGTCAATTGCTAGCTGTCATTGTTTTTAAGTTATTACAA
TCACTCATTTGAATTGAAAGGCGGAGATATTGTGGGATTGATCGAGTAAGAGAGAATTCTGGTGCAAGTGTGGTTCCGATCTTGTGCAGGTTGACACGCATCAACTCTCTCTCTCTCAAAGGGTTGTAGCTTGTGGGAGATATTGTGGGATTGATCGAGTAAGAGAGAATTCTGGTGCAAGTGTGGTTCCGATCTTGTGC
AGgttgacacgcatcaactctctctctctcaaagggttgtagcttgtgggatgaattgttagtagcatatactcaggcttgttgttttgtattctacacatgcataagggaaaaagtatgaaaggtttatgtagaccaatggaagccacttgattttgtttgagacagttgtgcatttttgcaattttatgtcttgtttg
caagtgctatcactgtaatcaattttgctgaaatctctgttgtatgttttcaagGCACCACTAGCAACTTCTGGCATAGCTTCAGCTGCAACCTTACATCC