sp|Q0IY07|ORC3_ORYSJ ----> Origin of replication complex subunit 3
Intron 1 GTAACTTTAC ... CGAATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.41 | 175 | 10 | 10 |
| A2 | 6.47 | 130 | 6 | 12 |
| A3 | 6.15 | 145 | 5 | 14 |
| A4 | 1.96 | 125 | 3 | 2 |
| A5 | 7.09 | 59 | 6 | 3 |
| A6 | 3.68 | 170 | 8 | 5 |
| A7 | 2.01 | 292 | 5 | 7 |
| A8 | 1.82 | 243 | 5 | 4 |
| A9 | 2.99 | 276 | 4 | 13 |
| A10 | 1.48 | 267 | 4 | 4 |
>TRINITY_DN121454_c4_g2_i9 from sample A1 / Example spliced isoformAGCGGATGGCTCTTTGGCGCGAAAAAGAAAGAAGAACTAGAGACTGCGGAAAGGCCGTCAAGTAACGGACAATAAGATACCGTCATTCCGTTACGCGTGGGATTGTCTTTTTGTTATCGGTGGCCGTTTATAGACAGAAACACCAGAGAGAGGGAAATCGATTTACAGCATTCGAAAAGCAGAGACAAAACCCAAGCTGC
GTACACATCTTTACAGGAGATGGATTCTACGAATGCCGCTGCCTCCTCTAATTCAGCCATCCGGGATGGTGACGACGATAAGCATTTGCAGGAATGTTTTGTTCTGCGGCGGGGATCCTCTGTCAGAGACTCTCTTGAAGCAGACCGGCCTTCAAAACCTAGAAGGAAACCAGAACCCGACTTCAGAACGGGAAGAAAAT
GCCACACCGTGCATAGCCTGCCGCCGTTTTCTAAGGACGAGCACGCTTTATACGGAAAATGGCGGATGGAAGCCTTTACTCAGGTTTGGTCTCGCATCGAGACTGCTATTAAGGATGTCCTTTTGGAGCTAGATATCTCTACTTTTGAAGAAATCCGTTGTTGGATTCACAACTCTCACTCTGCTGATCTGCGGTCTAAG
TTGCACTGTTCTTCGGATGATAAAAGCACAAATATAATGCCAAATTCTCCTGTTGTCAAGCAGCTGGCTACTGCTTTGCTGTTTATCAGGAATGTGGAGTTTGTAGATGATTGGAGTACTTTTGGAGAGCTTGGTTCATATATGAAATGCCATAATTGCCATGTTGCTAACTTGACACCACAAGAAATTTCATTAAAGTC
TGGCCTTGGAGGTTGTGTTCGCAGCTTACTGAAACAGATGGTTAAGATCAGCCCTGATACACCAGATATGGAAATTTTAGCATCTTGGCATCAGGAGCCAGCTAATAGGAAGGATCCTGTTGTCATTGTAATTGAGGATGTGGAGCGCTGTCACTGCTCCGTGCTAGCTGAATTTATCAATCTGTTAAGTGAATGGGTTG
TTCAAATACCAGTTGTTCTTGTAATGGGAATGGCAACAACAGTTGATGCTCTAAGGAAACTGCTGCCATCGAGTGCAATACAACATCTACATCCTCAAAGGTTCAACTTAAAGTATCCTCTTGAACGCCTTGAGGCTGTTCTTACTGCTGTACTGATTAAATCCTTCTATGGATTTTATATTGGACACAAAGTTGCAAAG
TTTCTCTACAATTTTTTTGTGAGGCAGGATGGCACTGTGACATCCTTTTTGAGGGCTCTGAAGATTGCAAGCATGGAACACTTTTACAGTGAACCTTTGAGCTTTCTATGCAATGAATTAGTGCAGGACCTGAGGCAGGAAGATTGGGAAAATATTTGCAAAGAAATTCCAGATGTCATGCTAAAGTATGCTGCAGAACT
CCCCTCTGTTCAGTTTGAACGCAAATGTGAAGATAAAGCAATTGGCAAGCAATTGGCTGCTGCATTGCTAGATATAAAGATCATGAAACAGAACTGGAGCACGGTTCTTTTGTGTCTACATGAAGCTGGGAAATATGCGAAAATTCGTCTTGCAGACCTTTTTTGTGAGGCACTTTCCCCATTATCTCCATTGAATTCAA
AAACTGTATGCCAAGAGATGCCAAGTGGAAGAGCTCGTGGAACTGACACATTAGGGAATGCTGATCTTCACAACAGCAGCTATTCAGACTTGACAAATGGGAAGTTCATTGGCCATGCTATCAAAAAACTAAGGGATCTGTCATTGCCATTATTAGCGAGTCTCCTTAAGGAGTGGGAGAAGCTGACGAAAGGAATGACA
GAGATCAATATTGAAGTTTACAGATTACAGTCAATAGTTGGACGTGATTTCAATGGAGACAATGCTGAAGAAATTTCTCGAGATTTCAGTGGAGACTTTACTGGCATGCCGCAAACTTCAAAAATCAGTGCAGAGAAACTGTTGCCAAAGACCAGCTCCTATGGTTGTTCAACTTCAGAAAGAGGGGATTTGAAAGCTGT
AAATGACATGGCTGTGAAGCTGCTTGAGCGAATGGTTAGACAGTATTTGAGACCAATAGAATCCATGCCCTTCCATGAAATAATATGCTACAAACAAGTTAATGCATTGCAGTCGGCCCTTATGGGAGACACTCGGAAAACAGTTCAAAATGATCTCATAAATTTCCAATCATCTCTCCAGTGTGGTTGCTGCAGAGGAT
TAGTTGGATTATCTTCATCCATGCATGACACTTCTCTCGCATATAATTTGGCTCAAGAACATGGTGATGTTATCAATGTCCATGATTGGTACGAGTCATTTGGAGCCATAGTTTCTGGGACAGATCTAAACAAGGAGCATGTGGAAAATAAATCTTCTGAGAAAAAGCGAAAGGCTATGGCTGGGCCCCGGCAAACAGAT
AAAGCTTCCATTCAGTATCCTTATTTTGGCTGATGAATAAACATTCATGGTCTTAATTGTGTCATTGAAAAGGAATTAGCTGTTTCTTGTAAATATCTACTCTTATGGAATGTCATAGGTACTGCATTTGTTTTGAAGGTGAAAGTCATTCCAGTAGTTAAGGAGTTGACTAATTTGTTGTCTTTGGTGCCAGTGAGTAG
CAGACATTTTATTCAAGTTTCTAATGGCCATTAGCTAAGGTGGCT
>TRINITY_DN121454_c4_g2_i11 from sample A1 / Example unspliced isoform:TCTAGATATGAAATGATAGTGCCTAGAAAGGTGGCCATCAACAAACAAATATGCACCAAAAGAGAAACAAATTGGGTTGTAAACCAAAACCCCCAAACGTAACCTGCTTGGTAGAATCGTTTATTTTAGTCAAGGTCTTTGTCTTCACTGGTATCATAATTATGCATATCTGTTACTGATTAGACTTGTGCCTTGGTTGG
CTTGCTGTTGCTGTTGATTTCTTGAATCTTTATCACATTTTATGAAATTGAAATGACTGCTGATGCAGATTTAAGCTTCAGTGATAGTTTTATTAAATTGTTTGGATTCCTAGTTTAAACCTAGTACCTTTCCTTTTAAAGAAGTCCAAGACAACATGAATGCACTTTGGTGTAGCATCTTTGTTGCATTGGAAGCAATA
CTATAGCCTGCTCTTTTACATCATTACGTCTTGATTATTATGTATGGTTCATTTTGTTGAAAAACTAATTGAAAGAATCAATCTACTTGGACAATCTCTTTATTTACTGAGTAAGCTCAGTGAAGTGATAGGATCATAGGACTATGCAAAAACACAATGGACCACTCTGAGATACATTAAACAAATTTGTAAGGAGTCTT
TGCTGACAATTTTGTAAGGACTAGAAGGCAGTTCAGGTTTCTAAATTGTTTGGACTTGTAGTTCAAATTCCAAACTTGTCTGGTAGAAACTTGGTACCTGTTTTATTGAAGAACTCCAAGAGAACATGAAATCACCTTGGTGCTACTATCTTTGTTGCACTGGCAGCCTTATTGATATAGCCATCTCTTTTGATATAAAA
TTAAAAATACAATCGTCTTTGACATGGTTGCATCTTGATTGTCATGTGTGGTTCATTTTGTTGAAAAACTAATTGAAAGAAAGTCGATTTAAATCGACAATCTCTTTATTTACTGTGCAGTAAGCTCAATGAAAAAGAACAATGGACCACTATGAAATACATAGAGTAGGAAGTCTTTGTTGACATTGGTTAATGATTAC
TCTGATTATAGTACTGTTTATAGAACACAATATGTGTACTTGCTGCTAAAGCAATATAATCGACGTCAACATTTGTTTCACAAAAGCTTTTATATTGAGAATGTTTTACTATTAAGCCTGATAAAAATGATTTGAGAATGCTTTTTTTGCAGATCAATATTGAAGTTTACAGATTACAGTCAATAGTTGGACGTGATTTC
AATGGAGACAATGCTGAAGgtaactttactggtattgggggcaactgtgagttaatgagcagacacccatataatatagagagagatcttgatagtgtttctgatcgaatgacagAAATTTCTCGAGATTTCAGTGGAGACTTTACTGGCATGCCGCAAACTTCAAAAATCAGTGCAGAGAAACTGTTGCCAAAGTAAGA
TTTTAGATTTCCTCAACCATGGTTGTAATTAAGGCAGTAATTTTGCATACATCACAGAAGTAACATTTGGAATATTAGAACCTTTAACATGATAGAACCTTCCAGATTAATCTATCAAATGCTTCTTAGCTGCCAGGATATTTATCTTTTCACTGATTTTGAAAGAGAATTACTATGAAGCTTGAGTCCATCCCATATTG
CAAATGATTTGAGATTATGGAAGAAAGCTGAGAGACTGATTTCTGCTCTTGGAATTGGGTACTTGTAGCCTTAATCCACAATATCATTTAATGGATGATAAGCTCTTTCTCATTACAGCAGATCCTCTTAGTTCAGTACCTTGTATTTGATATGGTTTTCATACCTACCATAAGAATGTAGGTAAGTAAGCAAATGATAT
TGGTTTGGTCCAATTGTAGAAAGTTTCTTGCCAAAATCATTCCTTTTGAGACAATACTTGTAAGATCACAGGGGGCTAACACAAACATATAATATTTATTATACTGTTGGGGCATCGCAACCCATTCAGAATTTTGAGATTTTCCTCCCCAATAGCCCCAGGACATCATAACCAAGAGTCCTTATTTATTGGTCTT
Intron 2 GTCAGCTTCC ... GATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.25 | 126 | 32 | 5 |
| A2 | 13.89 | 62 | 10 | 0 |
| A3 | 17.65 | 84 | 18 | 1 |
| A4 | 17.31 | 86 | 18 | 6 |
| A5 | 18.75 | 26 | 6 | 2 |
| A6 | 15.87 | 53 | 10 | 1 |
| A7 | 10.53 | 85 | 10 | 0 |
| A8 | 14.29 | 48 | 8 | 0 |
| A9 | 16.28 | 108 | 21 | 0 |
| A10 | 9.47 | 86 | 9 | 0 |
>TRINITY_DN121454_c4_g2_i9 from sample A1 / Example spliced isoformAGCGGATGGCTCTTTGGCGCGAAAAAGAAAGAAGAACTAGAGACTGCGGAAAGGCCGTCAAGTAACGGACAATAAGATACCGTCATTCCGTTACGCGTGGGATTGTCTTTTTGTTATCGGTGGCCGTTTATAGACAGAAACACCAGAGAGAGGGAAATCGATTTACAGCATTCGAAAAGCAGAGACAAAACCCAAGCTGC
GTACACATCTTTACAGGAGATGGATTCTACGAATGCCGCTGCCTCCTCTAATTCAGCCATCCGGGATGGTGACGACGATAAGCATTTGCAGGAATGTTTTGTTCTGCGGCGGGGATCCTCTGTCAGAGACTCTCTTGAAGCAGACCGGCCTTCAAAACCTAGAAGGAAACCAGAACCCGACTTCAGAACGGGAAGAAAAT
GCCACACCGTGCATAGCCTGCCGCCGTTTTCTAAGGACGAGCACGCTTTATACGGAAAATGGCGGATGGAAGCCTTTACTCAGGTTTGGTCTCGCATCGAGACTGCTATTAAGGATGTCCTTTTGGAGCTAGATATCTCTACTTTTGAAGAAATCCGTTGTTGGATTCACAACTCTCACTCTGCTGATCTGCGGTCTAAG
TTGCACTGTTCTTCGGATGATAAAAGCACAAATATAATGCCAAATTCTCCTGTTGTCAAGCAGCTGGCTACTGCTTTGCTGTTTATCAGGAATGTGGAGTTTGTAGATGATTGGAGTACTTTTGGAGAGCTTGGTTCATATATGAAATGCCATAATTGCCATGTTGCTAACTTGACACCACAAGAAATTTCATTAAAGTC
TGGCCTTGGAGGTTGTGTTCGCAGCTTACTGAAACAGATGGTTAAGATCAGCCCTGATACACCAGATATGGAAATTTTAGCATCTTGGCATCAGGAGCCAGCTAATAGGAAGGATCCTGTTGTCATTGTAATTGAGGATGTGGAGCGCTGTCACTGCTCCGTGCTAGCTGAATTTATCAATCTGTTAAGTGAATGGGTTG
TTCAAATACCAGTTGTTCTTGTAATGGGAATGGCAACAACAGTTGATGCTCTAAGGAAACTGCTGCCATCGAGTGCAATACAACATCTACATCCTCAAAGGTTCAACTTAAAGTATCCTCTTGAACGCCTTGAGGCTGTTCTTACTGCTGTACTGATTAAATCCTTCTATGGATTTTATATTGGACACAAAGTTGCAAAG
TTTCTCTACAATTTTTTTGTGAGGCAGGATGGCACTGTGACATCCTTTTTGAGGGCTCTGAAGATTGCAAGCATGGAACACTTTTACAGTGAACCTTTGAGCTTTCTATGCAATGAATTAGTGCAGGACCTGAGGCAGGAAGATTGGGAAAATATTTGCAAAGAAATTCCAGATGTCATGCTAAAGTATGCTGCAGAACT
CCCCTCTGTTCAGTTTGAACGCAAATGTGAAGATAAAGCAATTGGCAAGCAATTGGCTGCTGCATTGCTAGATATAAAGATCATGAAACAGAACTGGAGCACGGTTCTTTTGTGTCTACATGAAGCTGGGAAATATGCGAAAATTCGTCTTGCAGACCTTTTTTGTGAGGCACTTTCCCCATTATCTCCATTGAATTCAA
AAACTGTATGCCAAGAGATGCCAAGTGGAAGAGCTCGTGGAACTGACACATTAGGGAATGCTGATCTTCACAACAGCAGCTATTCAGACTTGACAAATGGGAAGTTCATTGGCCATGCTATCAAAAAACTAAGGGATCTGTCATTGCCATTATTAGCGAGTCTCCTTAAGGAGTGGGAGAAGCTGACGAAAGGAATGACA
GAGATCAATATTGAAGTTTACAGATTACAGTCAATAGTTGGACGTGATTTCAATGGAGACAATGCTGAAGAAATTTCTCGAGATTTCAGTGGAGACTTTACTGGCATGCCGCAAACTTCAAAAATCAGTGCAGAGAAACTGTTGCCAAAGACCAGCTCCTATGGTTGTTCAACTTCAGAAAGAGGGGATTTGAAAGCTGT
AAATGACATGGCTGTGAAGCTGCTTGAGCGAATGGTTAGACAGTATTTGAGACCAATAGAATCCATGCCCTTCCATGAAATAATATGCTACAAACAAGTTAATGCATTGCAGTCGGCCCTTATGGGAGACACTCGGAAAACAGTTCAAAATGATCTCATAAATTTCCAATCATCTCTCCAGTGTGGTTGCTGCAGAGGAT
TAGTTGGATTATCTTCATCCATGCATGACACTTCTCTCGCATATAATTTGGCTCAAGAACATGGTGATGTTATCAATGTCCATGATTGGTACGAGTCATTTGGAGCCATAGTTTCTGGGACAGATCTAAACAAGGAGCATGTGGAAAATAAATCTTCTGAGAAAAAGCGAAAGGCTATGGCTGGGCCCCGGCAAACAGAT
AAAGCTTCCATTCAGTATCCTTATTTTGGCTGATGAATAAACATTCATGGTCTTAATTGTGTCATTGAAAAGGAATTAGCTGTTTCTTGTAAATATCTACTCTTATGGAATGTCATAGGTACTGCATTTGTTTTGAAGGTGAAAGTCATTCCAGTAGTTAAGGAGTTGACTAATTTGTTGTCTTTGGTGCCAGTGAGTAG
CAGACATTTTATTCAAGTTTCTAATGGCCATTAGCTAAGGTGGCT
>TRINITY_DN121454_c4_g2_i4 from sample A1 / Example unspliced isoform:AGCGGATGGCTCTTTGGCGCGAAAAAGAAAGAAGAACTAGAGACTGCGGAAAGGCCGTCAAGTAACGGACAATAAGATACCGTCATTCCGTTACGCGTGGGATTGTCTTTTTGTTATCGGTGGCCGTTTATAGACAGAAACACCAGAGAGAGGGAAATCGATTTACAGCATTCGAAAAGCAGAGACAAAACCCAAGCTGC
GTACACATCTTTACAGGAGATGGATTCTACGAATGCCGCTGCCTCCTCTAATTCAGCCATCCGGGATGGTGACGACGATAAGCATTTGCAGGAATGTTTTGTTCTGCGGCGGGGATCCTCTGTCAGAGACTCTCTTGAAGCAGACCGGCCTTCAAAACCTAGAAGGAAACCAGAACCCGACTTCAGAACGGGAAGAAAAT
GCCACACCGTGCATAGCCTGCCGCCGTTTTCTAAGGACGAGCACGCTTTATACGGAAAATGGCGGATGGAAGCCTTTACTCAGGTTTGGTCTCGCATCGAGACTGCTATTAAGGATGTCCTTTTGGAGCTAGATATCTCTACTTTTGAAGAAATCCGTTGTTGGATTCACAACTCTCACTCTGCTGATCTGCGGTCTAAG
TTGCACTGTTCTTCGGATGATAAAAGCACAAATATAATGCCAAATTCTCCTGTTGTCAAGCAGCTGGCTACTGCTTTGCTGTTTATCAGGAATGTGGAGTTTGTAGATGATTGGAGTACTTTTGGAGAGCTTGGTTCATATATGAAATGCCATAATTGCCATGTTGCTAACTTGACACCACAAGAAATTTCATTAAAGTC
TGGCCTTGGAGGTTGTGTTCGCAGCTTACTGAAACAGATGGTTAAGATCAGCCCTGATACACCAGATATGGAAATTTTAGCATCTTGGCATCAGGAGCCAGCTAATAGGAAGGATCCTGTTGTCATTGTAATTGAGGATGTGGAGCGCTGTCACTGCTCCGTGCTAGCTGAATTTATCAATCTGTTAAGTGAATGGGTTG
TTCAAATACCAGTTGTTCTTGTAATGGGAATGGCAACAACAGTTGATGCTCTAAGGAAACTGCTGCCATCGAGTGCAATACAACATCTACATCCTCAAAGGTTCAACTTAAAGTATCCTCTTGAACGCCTTGAGGCTGTTCTTACTGCTGTACTGATTAAATCCTTCTATGGATTTTATATTGGACACAAAGTTGCAAAG
TTTCTCTACAATTTTTTTGTGAGGCAGGATGGCACTGTGACATCCTTTTTGAGGGCTCTGAAGgtcagcttccaaattggtatatcagatatcttttgtatagtgaagtatagttccgatggagtagagatatcaatggtcttacatcagctgaagttgattagtaatcaattcgttatccatggattttgcagATTGCA
AGCATGGAACACTTTTACAGTGAACCTTTGAGCTTTCTATGCAATGAATTAGTGCAGGACCTGAGGCAGGTTTGTTCTCATCTATCTTTTATTCATCCTTACTGATAGTATTATCATATATGTTTGG