NA ----> NA


Intron 1 GTTTGGGACA ... CCTTGTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A169.577824
A288.5721318
A360.44181441
A468.6381421
A5901711
A664.78282380
A766.82365491
A862.22343280
A967.874066103
A1067.24192652



>TRINITY_DN108597_c0_g1_i7 from sample A3 / Example spliced isoform
TCGCAATACGTGACCGACGTTTTGGTTCCACGAGTTTGAACAACCCAAGCCTGGCTTATGTAGGCACGTAATTTCCATGGGAAGGCAGCGTTACCGCTATTCCACAAAATGCAAAAGATCACCCTTAAACAGAGATAAATTTGCCAATATTTGAAAAAACCACATGCTAACTAGCTTGCCATACCCTCAGAAGATTCTAC
TCGCTTCAGCAGAGCTGACAAAAATAGACCAAGGCGCTTACACAGCACAGGGCAAAAGAAGAAAATCAAGGATGCCACAAAAGCGAATAAGAGATGAAGATGCTGCACCTATTCCTGAAGTGAAGGAAGAAATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGT
ACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGCTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAG
CTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAAC
AATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGG
TAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGT
GGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGG


>TRINITY_DN108597_c0_g1_i8 from sample A3 / Example unspliced isoform:
TCGCAATACGTGACCGACGTTTTGGTTCCACGAGTTTGAACAACCCAAGCCTGGCTTATGTAGGCACGTAATTTCCATGGGAAGGCAGCGTTACCGCTATTCCACAAAATGCAAAAGATCACCCTTAAACAGAGATAAATTTGCCAATATTTGAAAAAACCACATGCTAACTAGCTTGCCATACCCTCAGAAGATTCTAC
TCGCTTCAGCAGAGCTGACAAAAATAGACCAAGGCGCTTACACAGCACAGGGCAAAAGAAGAAAATCAAGGATGCCACAAAAGCGAATAAGAGATGAAGATGCTGCACCTATTCCTGAAGTGAAGGAAGAAATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGT
ACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGgtttgggacacacctaaagcgcctgaaggaccctgatcaaccaatttctctcttcattgatcgttctgcgagattagggaaacatctcattggaccaatccttgtgcagCTTCCTCCCAAGTTTGATGTGAAT
GTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTT
TCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTG
AACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATG
GGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGG




Intron 2 GTATGTTTCG ... CCTTGTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A175.4471924
A290.2421720
A370.48184541
A477.4683223
A594.4412410
A668283881
A770.12367297
A867.62346181
A971.334088111
A1077.38197753



>TRINITY_DN108597_c0_g1_i7 from sample A3 / Example spliced isoform
TCGCAATACGTGACCGACGTTTTGGTTCCACGAGTTTGAACAACCCAAGCCTGGCTTATGTAGGCACGTAATTTCCATGGGAAGGCAGCGTTACCGCTATTCCACAAAATGCAAAAGATCACCCTTAAACAGAGATAAATTTGCCAATATTTGAAAAAACCACATGCTAACTAGCTTGCCATACCCTCAGAAGATTCTAC
TCGCTTCAGCAGAGCTGACAAAAATAGACCAAGGCGCTTACACAGCACAGGGCAAAAGAAGAAAATCAAGGATGCCACAAAAGCGAATAAGAGATGAAGATGCTGCACCTATTCCTGAAGTGAAGGAAGAAATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGT
ACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGCTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAG
CTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAAC
AATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGG
TAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGT
GGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGG


>TRINITY_DN108597_c0_g1_i3 from sample A3 / Example unspliced isoform:
TTTGTATTAGTATTTACTATTCACGTGTGAGAATGAATATGAAGAGTCATAATGAATAGGAAGAGTCACCGGGAATCCAAGAGACCATTTGGAATTTAAAACCAAGGGTCATACTTCATGTATTTATATGTGTACCATCTTAATGCAATGTGTTTCTACGCTTATTCTTCATTTTGAGTGTTTCAACAGTAGTATCAAAG
ACCGATAGTTCCTAGGGCCTGGAGGAAGCTATGGTTGCTGTCCAAACCATGCTATCCATGAGAGTTCTTTCTCTTGTTGGGTGAATTTAATTACCTGGGTGAATTCCTTGTTGGGAAAATTGAAGAGAAGGTTGAATTCATTGTTGGGAAGACTCCTTGTTGGGTGAATTCACGATCTTGAAGAAGAGTCCATCGAGAAC
CACAGCTGGAAATGCACAAAATTCGACGAGAAAACACAACTGTAGAAGAAATTCGCTGTTTTTGGAGGCATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAG
CTCAG
gtatgtttcgagttggaacttcaggttatatttacaagcattggaaaggtgtagtttatccaaaggggctgccacaaaagaaatggtttgcgcattatgcacagatatttgacacagtggagatcaacaatacattttatcgcctcccttctcatgaagtatttgaatcttggcgtgatcaagctccggaaggct
tctgctatgcattgaagtttagcaggtttgggacacacctaaagcgcctgaaggaccctgatcaaccaatttctctcttcattgatcgttctgcgagattagggaaacatctcattggaccaatccttgtgcag
CTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGA
TATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCT
TCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGT
AAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAG
GCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGG




Intron 3 GTATGTTTCG ... AGTTTAGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A162.417.418.95
A258.312.91719
A366.541644.918
A461.6113.431.611
A571.966.523.99
A662.4122.337.636
A758.9652.171.178
A863.4430.160.343
A957.5564.187.486
A1067.1425.476.527



>TRINITY_DN114958_c6_g2_i9 from sample A1 / Example spliced isoform
CGAGAATCCATTCTATTCAATTGCGCTAATTTGCCTTTCCTCCGTCTTTGGTTTAATTATTAAATACGACCACGGGGAATCCAAATAGAGGAGTCCTGAAGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGC
AATCTTTGAATTTCTTACCAAAGAGCTCAGGTTTGGGACACACCTAAAGCGCCTGAAGGACCCTGATCAACCAATTTCTCTCTTCATTGATCGTTCTGCGAGATTAGGGAAACATCTCATTGGACCAATCCTTGTGCAGCTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAA
AAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAG
CAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGT
CTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATG
TTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTG
TGTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCAG


>TRINITY_DN114958_c6_g2_i13 from sample A1 / Example unspliced isoform:
AAAGACCGATAGTTCCTAGGGCCTGGAGGAAGCTATGGTTGCTGTCCAAACCATGCTATCCATGAGAGTTCTTTCTCTTGTTGGGTGAATTTAATTACCTGGGTGAATTCCTTGTTGGGAAAATTGAAGAGAAGGTTGAATTCATTGTTGGGAAGACTCCTTGTTGGGTGAATTCACGATCTTGAAGAAGAGTCCATCGA
GAACCACAGCTGGAAATGCACAAAATTCGACGAGAAAACACAACTGTAGAAGAAATTCGCTGTTTTTGGAGGCATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAA
AGAGCTCAGgtatgtttcgagttggaacttcaggttatatttacaagcattggaaaggtgtagtttatccaaaggggctgccacaaaagaaatggtttgcgcattatgcacagatatttgacacagtggagatcaacaatacattttatcgcctcccttctcatgaagtatttgaatcttggcgtgatcaagctccggaa
ggcttctgctatgcattgaagtttagcag
GTTTGGGACACACCTAAAGCGCCTGAAGGACCCTGATCAACCAATTTCTCTCTTCATTGATCGTTCTGCGAGATTAGGGAAACATCTCATTGGACCAATCCTTGTGCAGCTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAA
AGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGC
AGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGTC
TAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATGT
TCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTGT
GTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCAG




Intron 4 GTAGATGGCA ... GTCTAAACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A146.8817150
A278.573110
A35019190
A454.5510120
A5608120
A6559112
A754.1733390
A857.6922300
A953.5446533
A1048.1857530



>TRINITY_DN46225_c0_g1_i4 from sample A7 / Example spliced isoform
AAAACGAGGACTAAATCTTCTTAAGCACCCTCAAAGTCAAAATCAACTAATGTTATTTTAAGGCGTTTTGTTTTTTAATTTTCTTTTCTATACCTATAGCCACCCCTGTATAAATATTTTCGCAATACGTGACCGACGTTTTGGTTCCACGAGTTTGAACAACCCAAGCCTGGCTTATGTAGGCACGTAATTTCCATGGG
AAGGCAGCGTTACCGCTATTCCACAAAATGCAAAAGATCACCCTTAAACAGAGATAAATTTGCCAATATTTGAAAAAACCACATGCTAACTAGCTTGCCATACCCTCAGAAGATTCTACTCGCTTCAGCAGAGCTGACAAAAATAGACCAAGGCGCTTACACAGCACAGTTCTTCAGATAAATTCCACGGTGAAAGTTGA
GAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGGTATGTTTCGAGTTGGAACTTCAGGTTATATTTACAAGCATTGGAAAGGTGTAGTTTATCCAAAGGGGCTGCCACAAAAGAAATGGTTTGCGCATTATGCAC
AGATATTTGACACAGTGGAGATCAACAATACATTTTATCGCCTCCCTTCTCATGAAGTATTTGAATCTTGGCGTGATCAAGCTCCGGAAGGCTTCTGCTATGCATTGAAGTTTAGCAGGTCTTTTTGATTTGTCTGAACAAATATTTTCTTATTTGAAATTGCCTTGAAAAACTATTGAACCAATGCGATGTGCTAACAA
AACAATGGCTTTTGAGCCCTTTTTTATATTGTTCAATTTCATCCCGT


>TRINITY_DN46225_c0_g1_i5 from sample A7 / Example unspliced isoform:
AAAACGAGGACTAAATCTTCTTAAGCACCCTCAAAGTCAAAATCAACTAATGTTATTTTAAGGCGTTTTGTTTTTTAATTTTCTTTTCTATACCTATAGCCACCCCTGTATAAATATTTTCGCAATACGTGACCGACGTTTTGGTTCCACGAGTTTGAACAACCCAAGCCTGGCTTATGTAGGCACGTAATTTCCATGGG
AAGGCAGCGTTACCGCTATTCCACAAAATGCAAAAGATCACCCTTAAACAGAGATAAATTTGCCAATATTTGAAAAAACCACATGCTAACTAGCTTGCCATACCCTCAGAAGATTCTACTCGCTTCAGCAGAGCTGACAAAAATAGACCAAGGCGCTTACACAGCACAGgtagatggcaaaagaagaaaatcaaggatgc
cacaaaagcgaataagagatgaagatgctgcacctattcctgaagtgaaggaagaaattgctggagctaaggggcagaagttttacctgtttcatgtctaaacag
TTCTTCAGATAAATTCCACCGG




Intron 5 GTTTGACACA ... CCTTGTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A168.187624
A288.5721318
A361.29181740
A468.6381421
A588.241411
A662.91281976
A766.2365190
A861.36342979
A966.84061100
A1067.24192652



>TRINITY_DN40697_c0_g1_i5 from sample A9 / Example spliced isoform
CGCTTATTCTTCATTTTGAGTGTTTCAACAGTAGTATCAAAGACCGATAGTTCCTAGGGCCTGGAGGAAGCTATGGTTGCTGTCCAAACCATGCTATCCATGAGAGTTCTTTCTCTTGTTGGGTGAATTTAATTACCTGGGTGAATTCCTTGTTGGGAAAATTGAAGAGAAGGTTGAATTCATTGTTGGGAAGACTCCTT
GTTGGGTGAATTCACGATCTTGAAGAAGAGTCCATCGAGAACCACAGCTGGAAATGCACAAAATTCGACGAGAAAACACAACTGTAGAAGAAATTCGCTGTTTTTGGAGGCATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGA
GATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGCTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGT
ATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGC
AGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGA
TGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAG
AAGTGTGTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCACTTTGATAATATCCAATAATAGAGTAATGTTATCTAGAAGCAGTATAATGGTTATAAGAAATAATTAATTATAACATCAAAACTTTTCCATCCAAGGGTTGGTACTGAAGGTCAACGCTTCATAGGTAAGGCCCCGAAAGGTCTAATTGGT
CCCCAATGGTCTAAATTGAGCTCAGAGGGTTGCTCTTTAGTATAGAACGGGACATAGAATATTAAACAAGCGAATAATGATTTTCTATTTTCTCTCACATGATGCAATAGACAGCAATGAAATATTAAAACCAAATGCTAAAGGCAAAGGAATTTGAATAGAATTTGAAAGGTCTTACCTGAGTATAAAATGGGA


>TRINITY_DN40697_c0_g1_i4 from sample A9 / Example unspliced isoform:
CGCTTATTCTTCATTTTGAGTGTTTCAACAGTAGTATCAAAGACCGATAGTTCCTAGGGCCTGGAGGAAGCTATGGTTGCTGTCCAAACCATGCTATCCATGAGAGTTCTTTCTCTTGTTGGGTGAATTTAATTACCTGGGTGAATTCCTTGTTGGGAAAATTGAAGAGAAGGTTGAATTCATTGTTGGGAAGACTCCTT
GTTGGGTGAATTCACGATCTTGAAGAAGAGTCCATCGAGAACCACAGCTGGAAATGCACAAAATTCGACGAGAAAACACAACTGTAGAAGAAATTCGCTGTTTTTGGAGGCATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGA
GATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGgtttgacacacctaaagcgcctgaaggaccctgatcaaccaatttctctcttcattgatcgttctgcgagattagggaaacatctcattggaccaatccttgtgcagCTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTA
TGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCAT
TGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTC
CACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGT
TTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCACTTTGATAATATCCAATAATAGAGTAATGTTATCTAGAAGCAGT
ATAATGGTTATAAGAAATAATTAATTATAACATCAAAACTTTTCCATCCAAGGGTTGGTACTGAAGGTCAACGCTTCATAGGTAAGGCCCCGAAAGGTCTAATTGGTCCCCAATGGTCTAAATTGAGCTCAGAGGGTTGCTCTTTAGTATAGAACGGGACATAGAATATTAAACAAGCGAATAATGATTTTCTATTTTCT
CTCACATGATGCAATAGACAGCAATGAAATATTAAAACCAAATGCTAAAGGCAAAGGAATTTGAATAGAATTTGAAAGGTCTTACCTGAGTATAAAATGGGA




Intron 6 GTATGTTTCG ... CGTGATCAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A183.7831912
A283.7831714
A366.151845.425
A472.3193215
A584.623249
A669.07153829
A762.9417267
A869.23226138
A966.82378861
A1069.44227723



>TRINITY_DN43376_c1_g1_i2 from sample A6 / Example spliced isoform
CATTTTGAGTGTTTCAACAGTAGTATCAAAGACCGATAGTTCCTAGGGCCTGGAGGAAGCTATGGTTGCTGTCCAAACCATGCTATCCATGAGAGTTCTTTCTCTTGTTGGGTGAATTTAATTACCTGGGTGAATTCCTTGTTGGGAAAATTGAAGAGAAGGTTGAATTCATTGTTGGGAAGACTCCTTGTTGGGTGAAT
TCACGATCTTGAAGAAGAGTCCATCGAGAACCACAGCTGGAAATGCACAAAATTCGACGAGAAAACACAACTGTAGAAGAAATTCGCTGTTTTTGGAGGCATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGAGATCTCTCCAG
TGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGCTCCGGAAGGCTTCTGCTATGCATTGAAGTTTAGCAGGTTTGGGACACACCTAAAGCGCCTGAAGGACCCTGATCAACCAATTTCTCTCTTCATTGATCGTTCTGCGAGATTAGGGAAACATCTCATTGGACCAATCCTTGTGCAGCTTCCTCCCAAGTTTGAT
GTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCT
ACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCT
CTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGT
TATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCACTTTGATAATATCCAA
TAATAGAGTAATGTTATCTAGAAGCAGTATAATGGTTATAAGAAATAATTAATTATAACATCAAAACTTTTCCATCCAAGGGTTGGTACTGAAGGTCAACGCTTCATAGGTAAGGCCCCGAAAGGTCTAATTGGTCCCCAATGGTCTAAATTGAGCTCAGAGGGTTGCTCTTTAGTATAGAACGGGACATAGAATATTAA
ACAAGCGAATAATGATTTTCTATTTTCTCTCACATGATGCAATAGACAGCAATGAAATATTAAAACCAAATGCTAAAGGCAAAGGAATTTGAATAGAATTTGAAAGGTCTTACCTGAGTATAAAA


>TRINITY_DN43376_c1_g1_i7 from sample A6 / Example unspliced isoform:
GGCGTTTTGTTTTTTAATTTTCTTTTCTATACCTATAGCCACCCCTGTATAAATATTTTCGCAATACGTGACCGACGTTTTGGTTCCACGAGTTTGAACAACCCAAGCCTGGCTTATGTAGGCACGTAATTTCCATGGGAAGGCAGCGTTACCGCTATTCCACAAAATGCAAAAGATCACCCTTAAACAGAGATAAATTT
GCCAATATTTGAAAAAACCACATGCTAACTAGCTTGCCATACCCTCAGAAGATTCTACTCGCTTCAGCAGAGCTGACAAAAATAGACCAAGGCGCTTACACAGCACAGGGCAAAAGAAGAAAATCAAGGATGCCACAAAAGCGAATAAGAGATGAAGATGCTGCACCTATTCCTGAAGTGAAGGAAGAAATTGCTGTTCT
TCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGgtatgtttcgagttggaacttcaggttatatttacaagcattggaaaggtgtagtttatccaaaggggctgccac
aaaagaaatggtttgcgcattatgcacagatatttgacacagtggagatcaacaatacattttatcgcctcccttctcatgaagtatttgaatcttggcgtgatcaag
CTCCGGAAGGCTTCTGCTATGCATTGAAGTTTAGCAGGTTTGGGACACACCTAAAGCGCCTGAAGGACCCTGATCAACCAATTTCTCTCTTC
ATTGATCGTTCTGCGAGATTAGGGAAACATCTCATTGGACCAATCCTTGTGCAGCTTCCTCCCAAGTTTGATGTGAATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTC
AATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTTTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTG
GTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTTGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTC
TAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATATGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTG
GCATCAGAAGTGTGTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCACTTTGATAATATCCAATAATAGAGTAATGTTATCTAGAAGCAGTATAATGGTTATAAGAAATAATTAATTATAACATCAAAACTTTTCCATCCAAGGGTTGGTACTGAAGGTCAACGCTTCATAGGTAAGGCCCCGAAAGGTCT
AATTGGTCCCCAATGGTCTAAATTGAGCTCAGAGGGTTGCTCTTTAGTATAGAACGGGACATAGAATATTAAACAAGCGAATAATGATTTTCTATTTTCTCTCACATGATGCAATAGACAGCAATGAAATATTAAAACCAAATGCTAAAGGCAAAGGAATTTGAATAGAATTTGAAAGGTCTTACCTGAGTATAAAA




Intron 7 GTATGTTTCG ... TTATGCACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A171.188.31922
A279.393.7179.5
A365.96194528.5
A472.22103220
A567.0810.72419
A671.65153837
A756.9649.37257
A868.6523.76142
A963.8143.38864
A1075.22207743



>TRINITY_DN114958_c6_g2_i6 from sample A1 / Example spliced isoform
AAGATGTTTAAGCACAGCAGATGTTTCTACAATTAGTGAAAGGGCAAAAGAAGAAAATCAAGGATGCCACAAAAGCGAATAAGAGATGAAGATGCTGCACCTATTCCTGAAGTGAAGGAAGAAATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAG
AGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGATATTTGACACAGTGGAGATCAACAATACATTTTATCGCCTCCCTTCTCATGAAGTATTTGAATCTTGGCGTGATCAAGCTCCGGAAGGCTTCTGCTATGCATTGAAGTTTAGCAGGT


>TRINITY_DN114958_c6_g2_i5 from sample A1 / Example unspliced isoform:
CGTGACCGACGTTTTGGTTCCACGAGTTTGAACAACCCAAGCCTGGCTTATGTAGGCACGTAATTTCCATGGGAAGGCAGCGTTACCGCTATTCCACAAAATGCAAAAGATCACCCTTAAACAGAGATAAATTTGCCAATATTTGAAAAAACCACATGCTAACTAGCTTGCCATACCCTCAGAAGATTCTACTCGCTTCA
GCAGAGCTGACAAAAATAGACCAAGGCGCTTACACAGCACAGGGCAAAAGAAGAAAATCAAGGATGCCACAAAAGCGAATAAGAGATGAAGATGCTGCACCTATTCCTGAAGTGAAGGAAGAAATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAG
AGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGgtatgtttcgagttggaacttcaggttatatttacaagcattggaaaggtgtagtttatccaaaggggctgccacaaaagaaatggtttgcgcattatgcacagATATTTGACACAGTGGAGATCAACAATACATTTTATC
GCCTCCCTTCTCATGAAGTATTTGAATCTTGGCGTGATCAAGCTCCGGAAGGCTTCTGCTATGCATTGAAGTTTAGCAGGTCTTTTTGATTTGTCTGAACAAATATTTTCTTATTTGAAATTGCCTTGAAAAACTATTGAACCAATGCGATGTGCTAACAAAACAATGGCTTTTGAGCCCTTTTTTATATTGTTCAATTT
CATCCCGTGAGATTTATAATTG




Intron 8 GTATGTTTCG ... GCCACAAAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A163.08121922
A272.225179
A368.121745.727
A461.8173223
A57092418
A667.86183838
A757.89447249
A865.61276142
A965.96408867
A1078.67167741



>TRINITY_DN43376_c1_g1_i4 from sample A6 / Example spliced isoform
TTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGGAGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGAAATGGTTTGCGCATTATGCACAGATATTTGACACAGTGGAGATCAACAATACATTTTATCGCCTCCCTTC
TCATGAAGTATTTGAATCTTGGCGTGATCAAGCTCCGGAAGGCTTCTGCTATGCATTGAAGTTTAGCAGGTTTGGGACACACCTAAAGCGCCTGAAGGACCCTGATCAACCAATTTCTCTCTTCATTGATCGTTCTGCGAGATTAGGGAAACATCTCATTGGACCAATCCTTGTGCAGCTTCCTCCCAAGTTTGATGTGA
ATGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGT
TTTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTT
TGAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATA
TGGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCACTTTGATAATATCCAATAAT
AGAGTAATGTTATCTAGAAGCAGTATAATGGTTATAAGAAATAATTAATTATAACATCAAAACTTTTCCATCCAAGGGTTGGTACTGAAGGTCAACGCTTCATAGGTAAGGCCCCGAAAGGTCTAATTGGTCCCCAATGGTCTAAATTGAGCTCAGAGGGTTGCTCTTTAGTATAGAACGGGACATAGAATATTAAACAA
GCGAATAATGATTTTCTATTTTCTCTCACATGATGCAATAGACAGCAATGAAATATTAAAACCAAATGCTAAAGGCAAAGGAATTTGAATAGAATTTGAAAGGTCTTACCTGAGTATAAAA


>TRINITY_DN43376_c1_g1_i9 from sample A6 / Example unspliced isoform:
GCACAGCAGATGTTTCTACAATTAGTGAAAGGGCAAAAGAAGAAAATCAAGGATGCCACAAAAGCGAATAAGAGATGAAGATGCTGCACCTATTCCTGAAGTGAAGGAAGAAATTGCTGTTCTTCAGATAAATTCCACGGTGAAAGTTGAGAAAGATAGAAATGCTGCAGAAAATGATTGTACCATTAGAGTGAAACAGG
AGATCTCTCCAGTGCAGCAATCTTTGAATTTCTTACCAAAGAGCTCAGgtatgtttcgagttggaacttcaggttatatttacaagcattggaaaggtgtagtttatccaaaggggctgccacaaaagAAATGGTTTGCGCATTATGCACAGATATTTGACACAGTGGAGATCAACAATACATTTTATCGCCTCCCTTCT
CATGAAGTATTTGAATCTTGGCGTGATCAAGCTCCGGAAGGCTTCTGCTATGCATTGAAGTTTAGCAGGTTTGGGACACACCTAAAGCGCCTGAAGGACCCTGATCAACCAATTTCTCTCTTCATTGATCGTTCTGCGAGATTAGGGAAACATCTCATTGGACCAATCCTTGTGCAGCTTCCTCCCAAGTTTGATGTGAA
TGTGGAGCGCCTGAGAGATTTTATGCAATCTGCCCCAAAAGGATATCGTTGGGCTGTTGAATTTAGGGATACAAGATGGTTCTGTGAGGATGTTTATGGACTACTTCGAGCTCATAATGCTTCAATTTGTATACATGATCATGAAGATATCTCATGCGTACATCCACAGGTCCTGACGGCGGATTGGATCTATCTACGTT
TTCATGGAAAAAATTACAAGCATTGCTACAATACTGAGCAGCTTCAGGAACATGCTTCATGGATTCAAAAGCAACTTGCTCAAGGATTGGATGTGTTTGCATACTTTAACAATGACTATTGTGGTTATGCAGTGTCTAATGCAGTGGAGCTACGTGAACTTGTTACTGGGTTGAAATAATGTAATGAACTGCTCTCTTTT
GAACTTTTATTTCATAAAATCTCCACGTGCAAGTGGGTTTGGTAAAAAGAAGAATGGAATCCATGGTTGCATTTAAAAGAGTACTAGTTTTCTTCTCATTGAAGCCCTGGTAGAACCCAACTCTAGCAGATGATGTTCCTATGCCCTTTGAGAAAGCTATTAATGCAAAGCAGGTCTGATTCCAGGGTGATATGTTATAT
GGGTGTTTTGTCAAATGAGAAGTTTCTGCAGAAAATTTTGCAGGCTATGCATAACTTATTCTAAGATACTAACAAGGCCACAGAATATTTTGGTGGGCGTATTATGCTGTGGAATTTTTGGTGGCATCAGAAGTGTGTTCCAAGAATGGATTGGGGACAACTGTAGTCTTAGAGAACCACTTTGATAATATCCAATAATA
GAGTAATGTTATCTAGAAGCAGTATAATGGTTATAAGAAATAATTAATTATAACATCAAAACTTTTCCATCCAAGGGTTGGTACTGAAGGTCAACGCTTCATAGGTAAGGCCCCGAAAGGTCTAATTGGTCCCCAATGGTCTAAATTGAGCTCAGAGGGTTGCTCTTTAGTATAGAACGGGACATAGAATATTAAACAAG
CGAATAATGATTTTCTATTTTCTCTCACATGATGCAATAGACAGCAATGAAATATTAAAACCAAATGCTAAAGGCAAAGGAATTTGAATAGAATTTGAAAGGTCTTACCTGAGTATAAAA