sp|Q9ZUT5|PP191_ARATH ----> Pentatricopeptide repeat-containing protein At2g37310

Intron 1 GTTAAGTATC ... TAACATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.53	9.5	39	32.7
A2	76.37	10.8	42	27.2
A3	84.87	11	71	52.4
A4	65.44	20.6	41	36.2
A5	73.2	4.6	11	14
A6	70.77	49.3	136	101.5
A7	74.1	83.8	277	197.7
A8	69.78	64.8	181	115.9
A9	64.81	112.3	248	163.2
A10	71.22	94.6	300	166.5

>TRINITY_DN112559_c2_g2_i2 from sample A3 / Example spliced isoform

GACATTTTCTCAATGAGAAAGGGTTTCTTGGTACTATAGCTAGATTCATCATCTATCAGACGAATGAAATCTCGCTCCCACGTGCATCCTCACCCTTCATGTCAAATTCACCACGTCATTCGTCATCGACTTGTACTCTTTTGCTTGCTTGAAGATCACATACCCTAGTTGTATTTCTACAGGCGTGGGTCGAAGCCTAT
AGTGGCACCAAGAAGAGCCCCAATTGAGGGCATGGATGAGAGCGAAGCACCAATGGATTTGGTGGAATATTACTTACCTCATCAAAGAGGGCATTTGATAACGAAAGGGTTTTCTGTCAATCTTGCCAAAGGTATTTCTTTTGTTGCCAGCCAAGACAGCGAAGTTCGACCAGTCGTGGTAAGTAGAAGCTAGAACCATT
GCTTTACCTTTTCATTGGCTCTATCTTTGATCAAAAATTTGAAATTGTAAATAGAATCTTGACAGTAATGTGGATACACAGATACTATATTTCTA

>TRINITY_DN112559_c2_g2_i10 from sample A3 / Example unspliced isoform:

GACATTTTCTCAATGAGAAAGGGTTTCTTGGTACTATAGCTAGATTCATCATCTATCAGACGAATGAAATCTCGCTCCCACGTGCATCCTCACCCTTCATGTCAAATTCACCACGTCATTCGTCATCGACTTGTACTCTTTTGCTTGCTTGAAGATCACATACCCTAGTTGTATTTCTACAGGCGTGGGTCGAAGCCTAT
AGTGGCACCAAGAAGAGCCCCAATTGAGGGCATGGATGAGAGCGAAGCACCAATGGATTTGGTGGAATATTACTTACCTCATCAAAGAGgttaagtatcgattaaatcaaggttcttaattaattacagatggattaacagtcaacattttctttataacatgcagGGCATTTGATAACGAAAGGGTTTTCTGTCAATCT
TGCCAAAGGTATTTCTTTTGTTGCCAGCCAAGACAGCGAAGTTCGACCAGTCGTGGTAATTGTGCCTCATCCGGCGGTCAGATCACTCTTAATACAGAAATAATTAGGGAAGAGAAGAGGTAACTGGGTGACTGCCATCCAAGAATATGACCTCGAATTTAAGCCAGCCAAAATGGTTAAAGGTAAAGGATTATGCAAAC
TGGTTGCTGCTGGAGCCTTAGACCCAACAGGTAAAGGATTATGCAAACTGGTTGCTGCTGGAGCCTTAGACCCAACAGAGGAAACTGAAGAAGGTTGAGAGAACGATATATTGCTTTATGCCCAAGAGGTCCTATATATTCTTGCTAACACCTCAAATTTGAATTTCCAAAGTAGGTGGAGTTATTATTTGGCCAAATAA
CATTAGAGAGGAATTAAATGAGCCCCAATGTGTCATTCTCACGTAAAAATAACATTTATTAATATTTTATTGAATATTTGTGAGAGAATTATAGAATGAGGGGGAAATGCTCTATGAAGATTTATAAAAG

Intron 2 GTAAAGGATT ... AACCCAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	40.53	13.8	7	11.8
A2	52.48	15.7	16.5	17
A3	42.63	27.6	21.1	18.5
A4	53.04	8.7	9.5	10
A5	49.13	10.2	11.6	8.1
A6	51.15	116	112.5	123
A7	52.02	204.5	211.7	219
A8	50.73	258	248	269.1
A9	49.25	224.7	201.8	223.8
A10	50.84	144.6	145.2	146.7

>TRINITY_DN123100_c3_g2_i6 from sample A1 / Example spliced isoform

ACCCAACAGAGGAAACTGAAGAAGGTTGAGAGAACGATATATTGCTTTATGCCCAAGAGGTCCTATATATTCCTGCTAAACATAAATGCAATTAATAAGAAAAAATGAAAATTATGGCAATTATGATAGACTATCAAAAAAAATCTCGCTCCCACGTGCATCCTCACCCTTCATGTCAAATTCACCACGTCATTCGTCAT
CGACTTGTACTCTTTTGCTTGCTTGAAGATCACATACCCTAGTTGTATTTCTACAGGCGTGGGTCGAAGCCTATAGTGGCACCAAGAAGAGCCCCAATTGAGGGCATGGATGAGAGCGAAGCACCAATGGATTTGGTGGAATATTACTTACCTCATCAAAGAGGTTAAGTATCGATTAAATCAAGGTTCTTAATTAATTA
CAGATGGATTAACAGTCAACATTTTCTTTATAACATGCAGGGCATTTGATAACGAAAGGGTTTTCTGTCAATCTTGCCAAAGGTATTTCTTTTGTTGCCAGCCAAGACAGCGAAGTTCGACCAGTCGTGGTAATTGTGCCTCATCCGGCGGTCAGATCACTCTTAATACAGAAATAATTAGGGAAGAGAAGAGGTAACTG
GGTGACTGCCATCCAAGAATATGACCTCGAATTTAAGCCAGCCAAAATGGTTAAAGGTAAAGGATTATGCAAACTGGTTGCTGCTGGAGCCTTAGACCCAACAGAGGAAACTGAAGAAGGTTGAGAGAACGATATATTGCTTTATGCCCAAGAGGTCCTATATATTCCTGCTAAACATAAATGCAATTAATAAGAAAAAA
TGAAAATTATGGCAATTATGATAGACTATCATTTTCTTTCAAATATGATATAATCTAGGTGGAGTATTTGGTGATTTTTCAGATATGATATAATTTAGGCGGAATATTTGGTGAAGGA

>TRINITY_DN123100_c3_g2_i5 from sample A1 / Example unspliced isoform:

ACCCAACAGAGGAAACTGAAGAAGGTTGAGAGAACGATATATTGCTTTATGCCCAAGAGGTCCTATATATTCCTGCTAAACATAAATGCAATTAATAAGAAAAAATGAAAATTATGGCAATTATGATAGACTATCAAAAAAAATCTCGCTCCCACGTGCATCCTCACCCTTCATGTCAAATTCACCACGTCATTCGTCAT
CGACTTGTACTCTTTTGCTTGCTTGAAGATCACATACCCTAGTTGTATTTCTACAGGCGTGGGTCGAAGCCTATAGTGGCACCAAGAAGAGCCCCAATTGAGGGCATGGATGAGAGCGAAGCACCAATGGATTTGGTGGAATATTACTTACCTCATCAAAGAGGTTAAGTATCGATTAAATCAAGGTTCTTAATTAATTA
CAGATGGATTAACAGTCAACATTTTCTTTATAACATGCAGGGCATTTGATAACGAAAGGGTTTTCTGTCAATCTTGCCAAAGGTATTTCTTTTGTTGCCAGCCAAGACAGCGAAGTTCGACCAGTCGTGGTAATTGTGCCTCATCCTGCGGTCAGATCACTCTTAATACAGAAATAATTAGGGAAGAGAAGAGGTAACTG
GGTGACTGCCATCCAAGAATATGACCTCGAATTTAAGCCAGCCAAAATGGTTAAAGGTAAAGGATTATGCAAACTGGTTGCTGCTGGAGCCTTAGACCCAACAGgtaaaggattatgcaaactggttgctgctggagccttaaacccaacagAGGAAACTGAAGAAGGTTGAGAGAACGATATATTGCTTTATGCCCAAG
AGGTCCTATATATTCCTGCTAAACATAAATGCAATTAATAAGAAAAAATGAAAATTATGGCAATTATGATAGACTATCATTGTTCTTTCAAATATGATATAATCTAGGTGGAGTATTTGGTGATTTTTCAGATATGATATAATTTAGGTGGAATATTTGGTGAAGGAACATAAGTTAATATGTCGTAAAATTTTTCATAA
AAAGATGTTAATGAGCCC

Intron 3 GTTCTTAATT ... CTTGCCAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	67.22	15.9	45	20.1
A2	58.35	22.9	46	18
A3	73.62	19.4	75	33.4
A4	72.44	13	40	28.4
A5	68.24	6.4	16	11.6
A6	63.94	63.7	148	75.9
A7	63.01	125.3	288	138.4
A8	63.4	79.4	182	91.7
A9	59.07	132.4	255	127.7
A10	60	138.7	304	111.6

>TRINITY_DN38319_c0_g2_i7 from sample A6 / Example spliced isoform

CGAAGACATTTTCTCAATGAGAAAGGGTTTCTTGGTACTATAGCTAGATTCATCATCTATCAGACGAATGAAATCTCGCTCCCACGTGCATCCTCACCCTTCATGTCAAATTCACCACGTCATTCGTCATCGACTTGTACTCTTTTGCTTGCTTGAAGATCACATACCCTAGTTGTATTTCTACAGGCGTGGGTCGAAGC
CTATAGTGGCACCAAGAAGAGCCCCAATTGAGGGCATGGATGAGAGCGAAGCACCAATGGATTTGGTGGAATATTACTTACCTCATCAAAGAGGTTAAGTATCGATTAAATCAAGGTATTTCTTTTGTTGCCAGCCAAGACAGCGAAGTTCGACCAGTCGTGGTAA

>TRINITY_DN38319_c0_g2_i10 from sample A6 / Example unspliced isoform:

CGAAGACATTTTCTCAATGAGAAAGGGTTTCTTGGTACTATAGCTAGATTCATCATCTATCAGACGAATGAAATCTCGCTCCCACGTGCATCCTCACCCTTCATGTCAAATTCACCACGTCATTCGTCATCGACTTGTACTCTTTTGCTTGCTTGAAGATCACATACCCTAGTTGTATTTCTACAGGCGTGGGTCGAAGC
CTATAGTGGCACCAAGAAGAGCCCCAATTGAGGGCATGGATGAGAGCGAAGCACCAATGGATTTGGTGGAATATTACTTACCTCATCAAAGAGGTTAAGTATCGATTAAATCAAGgttcttaattaattacagatggattaacagtcaacattttctttataacatgcagggcatttgataacgaaagggttttctgtca
atcttgccaaagGTATTTCTTTTGTTGCCAGCCAAGACAGCGAAGTTCGACCAGTCGTGGTAAGTAGAAGCTAGAACCATTGCTTTACCTTTTCATTGGCTCTATCTTTGATCAAAAATTTGAAATTGTAAATACAATCTTGACAGTAATGTGGATACACAGATACTATATTTCTACTATGTTTGACACAGATACTATGT
TTTGCTCTGGGACTTTCCTGGAATCATTTTCCCTAAATGACAACATATTTTGGAAAATTTTGCCATGATTTTGAGATTTTTGGCCCGACTTTGATATCATCAAGAATTTTTCAGGGTA