sp|Q56YN8|SMC3_ARATH ----> Structural maintenance of chromosomes protein 3
Intron 1 GTGAGGAGGG ... TTTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 118 | 33 | 26 |
| A2 | 22.87 | 86 | 33 | 18 |
| A3 | 25.32 | 59 | 27 | 13 |
| A4 | 23.61 | 55 | 24 | 10 |
| A5 | 30.23 | 15 | 9 | 4 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 23.29 | 56 | 18 | 16 |
| A8 | 28.16 | 37 | 19 | 10 |
| A9 | 19.44 | 58 | 12 | 16 |
| A10 | 22.58 | 60 | 18 | 17 |
>TRINITY_DN114074_c0_g1_i7 from sample A3 / Example spliced isoformCCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCCTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCAGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATT
ATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATT
GTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAAC
AGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAG
GAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCT
GAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAA
GAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCA
TCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAA
ACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGCTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTG
CTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCG
TCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAG
ACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACGGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTA
AGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAAT
AGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTAC
AGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCAT
CAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGGTGTGATAGTTTGTT
CAAGCTAATGTTACTTGTTTCCTTCCTTCTGTTGACAATATAAATTAGAGACGAGATTTATTCTTGCATATTTAATATATATAATGTTATTTAAACAAGCCAGAAGATCAAAGCCAAATGGTTATCTTTGCAGTTGATTGACT
>TRINITY_DN114074_c0_g1_i6 from sample A3 / Example unspliced isoform:CCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCCTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCAGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATT
ATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATT
GTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAAC
AGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAG
GAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCT
GAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAA
GAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCA
TCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAA
ACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGCTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTG
CTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCG
TCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGgtgaggagggcatgttagatgaaaatttatccttgtatggttgcttttataatgctttttagcttataatgtattttaaaccatt
ttttccagGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGA
AGACGGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATT
GATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGA
ATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAA
AAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCA
TTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTAATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGG
TTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACACAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGA
CACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGGTAATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCACTTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATG
CACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTAATACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACATATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGAC
AAAAGGGCAAAGAAGCTTTTTTTGAACATTCTTATCCCATGTACACTACATGCTCATGATTGAGTGAATTACAGATTCAATTAAAACTTTCCCTCAAGATTGACTGGTATTATTTTCAGACAAGCAAGAAAGAGCATATGGGACACCATAAGCCTAGCATCTTCTTCCTGTCGAAAAGGCATTGCCAGGAAAACTTTAAT
GTAGATACTACTATGTTACGTTTGAGTGAATTGCAGACTTACATATAAGATTTAGCCATTTAATATCATGCTCAAATAGACACTCTAGAAAGATTCGGATTATCTTGCAATCGGTACCAAAACAGACACGTTGGCTCTTCTTGCCTATGTTATGAAGGGAAACTAATGCTTCTGTTTCTTCCAAGTAATTTATTATTTTA
TGATGCATCTTTCGTGA
Intron 2 GTGTGATAGT ... ATTATAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.6 | 80 | 10 | 29 |
| A2 | 23.08 | 85 | 9 | 42 |
| A3 | 17.12 | 46 | 10 | 9 |
| A4 | 13.51 | 32 | 1 | 9 |
| A5 | 33.33 | 9 | 6 | 3 |
| A6 | 22.33 | 40 | 2 | 21 |
| A7 | 19.11 | 163 | 27 | 50 |
| A8 | 17.59 | 164 | 27 | 43 |
| A9 | 18.24 | 121 | 16 | 38 |
| A10 | 16.49 | 157 | 21 | 41 |
>TRINITY_DN119199_c0_g6_i4 from sample A2 / Example spliced isoformATTTTTTTCTTATTGTTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAA
AGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACAT
GAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTC
AAATCCATACTATGTTGTGCAACAGGGAAAGATAGCTTCCTTAACATTAATGAAAGATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGAT
TAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGT
TTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGTTTGCCAATAGGCCTGTATTTAAATTTC
TGAACTTTTGGTTGGTTCTGGCAAACTGAAGTATATAATATATTGCACCACTTACAGTGTTTTCTTGTCTTCATATGCATCATGAATTAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGA
GATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAGGAGT
TTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCA
GAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGAT
CTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCGCATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACT
TGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCT
ATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCT
TAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTG
TCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAA
TTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCA
CAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTAATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGG
CAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACA
CAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGGTAATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCAC
TTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTAATACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACAT
ATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAGAAGCTTTTGTTGAAGATTCTTATCCCATGTACACTACATGCTCATGATTGAGTGAATTACAGATTCAATTAAAACTTTCCCTCAAGATTGACTGGTATTATTTTCAGACAAGCAAGAAAGAGCATATGGGACACCATAA
GCCTAGCATCTTCTTCCTGTCGAAAAGGCATTGCCAGGAAAACTTTAATGTAGATACTACTATGTTACGTTTGAGTGAATTGCAGACTTACATATAAGATTTAGCCATTTAATATCATGCTCAAATAGACACTCTATAAAGATTCAGATTATCTTGCAATCGGTACCAAAACAGACACGTTGGCTCTTCTTGCCTATGTT
ATGAAGGGAAACTAATGCTTCTGTTTCTTCCAAGTAATTTATTATTTTATGATGCATCTTTCGTGAGCAAGAATGAAAAATAAAATGCATTGCCCTCTTTAAAACAAAAAGCACTGATATTGATTGCATTCTCTAGTGCTTGTGGAATATGCATTGTTGACCTTAATTATTTTAGGATGTTATGAGAACAGAATTGAAGC
CGGTAAGGTCAATATAGCATGTTATTGGACTAGAATTATAGTTCTTCCCAGACTATCACAATGCTTTATATAGCAATATTGAAAGCAATTTTGAGTTAATCTTATTTGACTGCAATTCATGACACATCCATGTATTTTTCCTTTTCTATTTTATGCATGGGTATTGTATCAAGGGTAGATAATTGCGAATAAGATCAGTT
CCAATTGGGTTTTGTTTGGATGGTATTGATTGCAATATCACTGAGGGTTTATTGTTATATTTTCGACCCTATAATTTGTTTTCCAAAAATGCATTGGTGAGTGGATTGGTTTGTTGGACTTCTGGAACTGCTCTGTTTATACTTTATTGTTAACCACTTAAATCCTTTGTGGT
>TRINITY_DN119199_c0_g6_i1 from sample A2 / Example unspliced isoform:ATTTTTTTCTTATTGTTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAA
AGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACAT
GAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTC
AAATCCATACTATGTTGTGCAACAGGGAAAGATAGCTTCCTTAACATTAATGAAAGATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGAT
TAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGT
TTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCT
TGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTG
ATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAGGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAA
GAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGA
TTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCGCATAATCCAGATGTTGTTCCTC
TGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAA
TTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCAC
AAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGA
AACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCT
GCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAAT
TCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTG
GTGATGAGgtgtgatagtttgttcaagctaatgttacttgtttccttccttctgttgacaatataaattagagacgagatttattcttgcatatttaatatatataatgttatttaaacaagccagaagatcaaagccaaatggttatctttgcagttgattgacttgtgaattataacagAAAATCAGAGAATTAATTT
CAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTA
GAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACACAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGG
TAGTATCCTGCTTTGTACTTCAAAGCCTTTTACCTCCTTCCTATGACCTTTTTTTGGTATGCATTCATACTTAGGTGTATATAGTTTGTCTGTTGCACTGGCCAGATATTAAGTGAAGTGTTTGCTTGCTTTGTAAAACTAAATCAGTAGTAGTTTTTCATTGCATTGGTATAAAATCTCGTGGATTTTCTCCTTGACGA
TTATTTGAAGATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCACTTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTA
ATACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACATATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAGAAGCTTTT
Intron 3 GTATCCTGCT ... TTATTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.95 | 123 | 34.6 | 26 |
| A2 | 24.44 | 136 | 44 | 21.2 |
| A3 | 23.95 | 153 | 48.2 | 16 |
| A4 | 25.6 | 93 | 32 | 12 |
| A5 | 30.22 | 18 | 7.8 | 4.8 |
| A6 | 21.57 | 141 | 38.8 | 21.6 |
| A7 | 23.2 | 337 | 101.8 | 46.4 |
| A8 | 21.3 | 427 | 115.6 | 74.6 |
| A9 | 22.64 | 287 | 84 | 40.8 |
| A10 | 24.27 | 176 | 56.4 | 21.6 |
>TRINITY_DN119199_c0_g6_i4 from sample A2 / Example spliced isoformATTTTTTTCTTATTGTTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAA
AGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACAT
GAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTC
AAATCCATACTATGTTGTGCAACAGGGAAAGATAGCTTCCTTAACATTAATGAAAGATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGAT
TAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGT
TTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGTTTGCCAATAGGCCTGTATTTAAATTTC
TGAACTTTTGGTTGGTTCTGGCAAACTGAAGTATATAATATATTGCACCACTTACAGTGTTTTCTTGTCTTCATATGCATCATGAATTAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGA
GATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAGGAGT
TTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCA
GAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGAT
CTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCGCATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACT
TGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCT
ATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCT
TAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTG
TCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAA
TTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCA
CAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTAATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGG
CAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACA
CAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGGTAATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCAC
TTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTAATACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACAT
ATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAGAAGCTTTTGTTGAAGATTCTTATCCCATGTACACTACATGCTCATGATTGAGTGAATTACAGATTCAATTAAAACTTTCCCTCAAGATTGACTGGTATTATTTTCAGACAAGCAAGAAAGAGCATATGGGACACCATAA
GCCTAGCATCTTCTTCCTGTCGAAAAGGCATTGCCAGGAAAACTTTAATGTAGATACTACTATGTTACGTTTGAGTGAATTGCAGACTTACATATAAGATTTAGCCATTTAATATCATGCTCAAATAGACACTCTATAAAGATTCAGATTATCTTGCAATCGGTACCAAAACAGACACGTTGGCTCTTCTTGCCTATGTT
ATGAAGGGAAACTAATGCTTCTGTTTCTTCCAAGTAATTTATTATTTTATGATGCATCTTTCGTGAGCAAGAATGAAAAATAAAATGCATTGCCCTCTTTAAAACAAAAAGCACTGATATTGATTGCATTCTCTAGTGCTTGTGGAATATGCATTGTTGACCTTAATTATTTTAGGATGTTATGAGAACAGAATTGAAGC
CGGTAAGGTCAATATAGCATGTTATTGGACTAGAATTATAGTTCTTCCCAGACTATCACAATGCTTTATATAGCAATATTGAAAGCAATTTTGAGTTAATCTTATTTGACTGCAATTCATGACACATCCATGTATTTTTCCTTTTCTATTTTATGCATGGGTATTGTATCAAGGGTAGATAATTGCGAATAAGATCAGTT
CCAATTGGGTTTTGTTTGGATGGTATTGATTGCAATATCACTGAGGGTTTATTGTTATATTTTCGACCCTATAATTTGTTTTCCAAAAATGCATTGGTGAGTGGATTGGTTTGTTGGACTTCTGGAACTGCTCTGTTTATACTTTATTGTTAACCACTTAAATCCTTTGTGGT
>TRINITY_DN119199_c0_g6_i1 from sample A2 / Example unspliced isoform:ATTTTTTTCTTATTGTTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAA
AGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACAT
GAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTC
AAATCCATACTATGTTGTGCAACAGGGAAAGATAGCTTCCTTAACATTAATGAAAGATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGAT
TAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGT
TTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCT
TGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTG
ATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAGGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAA
GAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGA
TTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCGCATAATCCAGATGTTGTTCCTC
TGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAA
TTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCAC
AAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGA
AACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCT
GCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAAT
TCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTG
GTGATGAGGTGTGATAGTTTGTTCAAGCTAATGTTACTTGTTTCCTTCCTTCTGTTGACAATATAAATTAGAGACGAGATTTATTCTTGCATATTTAATATATATAATGTTATTTAAACAAGCCAGAAGATCAAAGCCAAATGGTTATCTTTGCAGTTGATTGACTTGTGAATTATAACAGAAAATCAGAGAATTAATTT
CAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTA
GAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACACAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGG
TAgtatcctgctttgtacttcaaagccttttacctccttcctatgacctttttttggtatgcattcatacttaggtgtatatagtttgtctgttgcactggccagatattaagtgaagtgtttgcttgctttgtaaaactaaatcagtagtagtttttcattgcattggtataaaatctcgtggattttctccttgacga
ttatttgaagATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCACTTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTA
ATACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACATATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAGAAGCTTTT
Intron 4 ATGCAAAAGT ... ATGAAAAGAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.41 | 164 | 148 | 114 |
| A2 | 44.14 | 181 | 160 | 126 |
| A3 | 45.51 | 164 | 147 | 127 |
| A4 | 42.86 | 50 | 43 | 32 |
| A5 | 45.16 | 17 | 16 | 12 |
| A6 | 33.33 | 2 | 2 | 0 |
| A7 | 46.96 | 61 | 59 | 49 |
| A8 | 44.44 | 15 | 14 | 10 |
| A9 | 50 | 21 | 18 | 24 |
| A10 | 40.1 | 59 | 48 | 31 |
>TRINITY_DN114074_c0_g1_i7 from sample A3 / Example spliced isoformCCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCCTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCAGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATT
ATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATT
GTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAAC
AGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAG
GAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCT
GAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAA
GAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCA
TCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAA
ACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGCTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTG
CTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCG
TCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAG
ACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACGGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTA
AGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAAT
AGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTAC
AGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCAT
CAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGGTGTGATAGTTTGTT
CAAGCTAATGTTACTTGTTTCCTTCCTTCTGTTGACAATATAAATTAGAGACGAGATTTATTCTTGCATATTTAATATATATAATGTTATTTAAACAAGCCAGAAGATCAAAGCCAAATGGTTATCTTTGCAGTTGATTGACT
>TRINITY_DN114074_c0_g1_i1 from sample A3 / Example unspliced isoform:CCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCCTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCAGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATT
ATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATT
GTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAAC
AGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAG
GAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCT
GAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACatgcaaaagttgagctggatgtcagagatttagaagagaaaatcaatggcgaaggacggatgaaggaagatgaagcgaaaaacagaagcaatgaaaagacATGCAAAAGTTGAGCTG
GATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCT
TTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAAT
TGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGCTTGGACCATGCTGCTCCTGGTGACATAAGAAGG
GGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGG
GAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATT
GTATCACAATGGAAGG
Intron 5 GTTTGCCAAT ... CATGAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.34 | 258 | 45 | 121 |
| A2 | 22.67 | 249 | 48 | 98 |
| A3 | 23.36 | 269 | 44 | 120 |
| A4 | 26.9 | 72 | 14 | 39 |
| A5 | 26.76 | 26 | 4 | 15 |
| A6 | 30 | 7 | 2 | 4 |
| A7 | 21.7 | 83 | 23 | 23 |
| A8 | 28.77 | 26 | 9 | 12 |
| A9 | 23.38 | 59 | 4 | 32 |
| A10 | 23.77 | 101 | 16 | 47 |
>TRINITY_DN119199_c0_g6_i3 from sample A2 / Example spliced isoformATTTTTTTCTTATTGTTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAA
AGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACAT
GAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTC
AAATCCATACTATGTTGTGCAACAGGGAAAGATAGCTTCCTTAACATTAATGAAAGATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGAT
TAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGT
TTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCT
TGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTG
ATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAGGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAA
GAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGTTTGGACCATGCTGCTCCTGGTGTAAGTACCTCACTATATTGATTTGTATTTGTTGCATGATTCATAAATTGAGTTATTCTGCT
>TRINITY_DN119199_c0_g6_i8 from sample A2 / Example unspliced isoform:ATTTTTTTCTTATTGTTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAA
AGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACAT
GAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTC
AAATCCATACTATGTTGTGCAACAGGGAAAGATAGCTTCCTTAACATTAATGAAAGATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGAT
TAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGT
TTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGgtttgccaataggcctgtatttaaatttc
tgaacttttggttggttctggcaaactgaagtatataatatattgcaccacttacagtgttttcttgtcttcatatgcatcatgaattagGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGA
GATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAGGAGT
TTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCA
GAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGAT
CTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCGCATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACT
TGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCT
ATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCT
TAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTG
TCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAA
TTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCA
CAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTAATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGG
CAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACA
CAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGGTAGTATCCTGCTTTGTACTTCAAAGCCTTTTACCTCCTTCCTATGACCTTTTTT
TGGTATGCATTCATACTTAGGTGTATATAGTTTGTCTGTTGCACTGGCCAGATATTAAGTGAAGTGTTTGCTTGCTTTGTAAAACTAAATCAGTAGTAGTTTTTCATTGCATTGGTATAAAATCTCGTGGATTTTCTCCTTGACGATTATTTGAAGATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATA
ACGACCACTTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTAATACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGT
GAGTACATATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAGAAGCTTTT
Intron 6 GCATTGTACA ... ATTATGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.81 | 163 | 125 | 119 |
| A2 | 37.57 | 108 | 87 | 43 |
| A3 | 40.62 | 144 | 96 | 101 |
| A4 | 41.44 | 65 | 47 | 45 |
| A5 | 38.82 | 26 | 17 | 16 |
| A6 | 41.18 | 5 | 4 | 3 |
| A7 | 40.54 | 33 | 20 | 25 |
| A8 | 40 | 6 | 5 | 3 |
| A9 | 41.18 | 20 | 18 | 10 |
| A10 | 44.36 | 37 | 31 | 28 |
>TRINITY_DN108115_c1_g1_i6 from sample A5 / Example spliced isoformCACGGGGATATATATTTCATTTTTAAAATTTATATTTTTTTCTTCTTGCTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTT
CTGCACTCTCGGCCGCGGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAACCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAAT
CTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTAT
GAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAACAGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAA
TTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGC
ATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAAAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCAATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGAT
GAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAG
CCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTT
GCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCC
TGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATG
TTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATG
ACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAAATCTGAGTT
GGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCC
AATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAG
CTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCT
TCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGG
AGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTAATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAG
GTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACACAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCC
ATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGGTAATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAA
>TRINITY_DN108115_c1_g1_i3 from sample A5 / Example unspliced isoform:CACGGGGATATATATTTCATTTTTAAAATTTATATTTTTTTCTTCTTGCTTTCCGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCTTGTAAACTTGAACTCGGCTGATTT
CTGCACTCTCGGCCGCGGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAACCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAAT
CTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAgcattgtacatatttattatgctagGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAA
AACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAACAGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAG
GAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAAC
TAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAAAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCAATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAG
AGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGA
CGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACT
TATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAA
GAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCT
CTGAATCGAATCAGAGCTCCACATGTTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGA
TCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAA
AACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACC
CCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGC
TGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAAC
AACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATAT
GTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTAATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAAT
GATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAGGGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACACAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTG
CAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTGTTGGTAATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCACTTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGA
GTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTAATACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACATATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAG
AAGCTTTTTTTGAACATTCTTATCCCATGTACACTACATGCTCATGATTGAGTGAATTACAGATTCAATTAAAACTTTCCCTCAAGATTGACTGGTATTATTTTCAGACAAGCAAGAAAGAGCATATGGGACACCATAAGCCTAGCATCTTCTTCCTGTCGAAAAGGCATTGCCAGGAAAACTTTAATGTAGATACTACT
ATGTTACGTTTGAGTGAATTGCAGACTTACATATAAGATTTAGCCATTTAATATCATGCTCAAATAGACACTCTAGAAAGATTCGGATTATCTTGCAATCGGTACCAAAACAGACACGTTGGCTCTTCTTGCCTATGTTATGAAGGGAAACTAATGCTTCTGTTTCTTCCAAG
Intron 7 ATGCAAAAGT ... ATGAAAAGAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.95 | 145 | 70 | 14 |
| A2 | 31 | 160.3 | 70 | 14 |
| A3 | 28.42 | 143.3 | 55 | 17 |
| A4 | 38.28 | 47 | 29 | 4 |
| A5 | 35.37 | 15 | 8 | 1 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 25.36 | 54.3 | 18 | 8 |
| A8 | 33.49 | 14 | 7 | 2 |
| A9 | 20.19 | 17.3 | 4 | 2 |
| A10 | 31.69 | 51.3 | 23 | 0 |
>TRINITY_DN107951_c4_g2_i4 from sample A4 / Example spliced isoformGACCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCCTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGA
TTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAACCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTA
TTGTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGATTTTCTCGTTCAAATCCATACTATGTTGTGCA
ACAGGGAAAGATAGCTTCCTTAACATTAATGAAAGATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGA
AGGAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGAT
CTGAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAAAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCAATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACA
AAGAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTAT
CATCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAGGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGG
AAACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGTTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTAC
TGCTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCGCATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCT
CGTCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATT
AGACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACAGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATC
TAAGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAA
ATAGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATT
ACAGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCC
ATCAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAAT
TAATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCA
AGGGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACACAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGC
TGTTGGTAATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCACTTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTAAT
ACTAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACATATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAGAAGCTTTTGTTGAAGATTCTTATCCCATGTACACTACATGCTCATGATTGAGTGAATTACAGATTCAATTAAAACTTTC
CCTCAAGATTGACTGGTATTATTTTCAGACAAGCAAGAAAGAGCATATGGGACACCATAAGCCTAGCATCTTCTTCCTGTCGAAAAGGCATTGCCAGGAAAACTTTAATGTAGATACTACTATGTTACGTTTGAGTGAATTGCAGACTTACATATAAGATTTAGCCATTTAATATCATGCTCAAATAGACACTCTAGAAA
GATTCGGATTATCTTGCAATCGGTACCAAAACAGACACGTTGGCTCTTCTTGCCTATGTTATGAAGG
>TRINITY_DN107951_c4_g2_i3 from sample A4 / Example unspliced isoform:TGATAGATCAATTTTCCGGTAGGCTCATTCTTTCAGATGGTGAAAATTTCTCATTTTGTTCAGTTATGTACATTCATCAGGAATGTCTCCAAAGTTGGCTGGAATGTCCAGTTGCTTAAGTTTGTCCATTTTAAAATAAATGTTTTTAATTCAATGGTGATTTTTTCTGCCCATTATTTTATGGTATCTAACTTGTAATA
CTCTTTATATCATACAGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCGGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATTATTGAGGGTTTCAAAAGTTACAAGGAGCAGGT
TGCGACAGAACCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATTGTCAGCATTTGTGGAGATAGTTTTTGATAACT
CCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGATTTTCTCGTTCAAATCCATACTATGTTGTGCAACAGGGAAAGATAGCTTCCTTAACATTAATGAAA
GATGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAGGAAGAACTGAAAAAATACCAGCAATTGGACAA
GCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCTGAAAAATTTAAGCAAGGAATCTCAAGTCATGG
TGAAGGAAAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCAATGAAAAGACatgcaaaagttgagctggatgtcagagaagcgaaaaacagaagcgatgaaaagacATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGG
Intron 8 GTAAGGTTAC ... GCTTCTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.54 | 191 | 88 | 0 |
| A2 | 33.64 | 217 | 110 | 1 |
| A3 | 30.54 | 166 | 73 | 5 |
| A4 | 27.78 | 117 | 45 | 0 |
| A5 | 36.67 | 19 | 11 | 1 |
| A6 | 21.9 | 107 | 30 | 0 |
| A7 | 26.72 | 384 | 140 | 0 |
| A8 | 24.78 | 504 | 166 | 1 |
| A9 | 28.08 | 292 | 114 | 1 |
| A10 | 28.32 | 281 | 111 | 0 |
>TRINITY_DN114074_c0_g1_i9 from sample A3 / Example spliced isoformCCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCCTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCAGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATT
ATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATT
GTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAAC
AGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAG
GAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCT
GAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAA
GAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCA
TCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAA
ACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGCTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTG
CTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCG
TCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAG
ACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACGGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTA
AGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAAT
AGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTAC
AGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCAT
CAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTA
ATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAG
GGTAGAGAAGTACATAGGTGTTAAAGTGAGGGTTTCATTTACGGGGCAAGGCGAGACACAATCAATGAAGCAACTCTCTGGTGGCCAGAAAACAGTTGTAGCATTGACACTGATCTTTGCAATTCAGCGCTGTGATCCTGCTCCATTTTATCTTTTTGATGAAATAGATGCAGCACTTGATCCACAGTACAGAACAGCTG
TTGGTAATATGATTAAGCGCCAGGCGGACACTGCAAACACACAGTTTATAACGACCACTTTCAGGCCAGAGCTCGCGAAAGTTGCAGATAAGATTTATGGTGTAATGCACAAAAACAGAGTCAGTCGTGTTGATGTCATAACAAAAGAAGATGCACTCTACTTCATTGAGCAGGATCAGAGCCACCAACGCGAGTAATAC
TAATAATAATATCTGGCGTTTTTGTACAAAGGCCTGTATATTCTTCTAGTGAGTACATATATAACTGTTTGGAGTTATGATATTCTATGTACTAATAGGTTAAGGACAAAAGGGCAAAGAAGCTTTTTTTGAACATTCTTATCCCATGTACACTACATGCTCATGATTGAGTGAATTACAGATTCAATTAAAACTTTCCC
TCAAGATTGACTGGTATTATTTTCAGACAAGCAAGAAAGAGCATATGGGACACCATAAGCCTAGCATCTTCTTCCTGTCGAAAAGGCATTGCCAGGAAAACTTTAATGTAGATACTACTATGTTACGTTTGAGTGAATTGCAGACTTACATATAAGATTTAGCCATTTAATATCATGCTCAAATAGACACTCTAGAAAGA
TTCGGATTATCTTGCAATCGGTACCAAAACAGACACGTTGGCTCTTCTTGCCTATGTTATGAAGGGAAACTAATGCTTCTGTTTCTTCCAAGTAATTTATTATTTTATGATGCATCTTTCGTGA
>TRINITY_DN114074_c0_g1_i8 from sample A3 / Example unspliced isoform:CCGAGGGAATGTAAAATGCCGGAGGAGACTTCAAGCTTATGGCAGAAGATATTTCCCGCTCGATGAAACATCTCTCGGCCCCGTAAATATTTGCGATTCGGAGGTGAGCGGTTCCACTCCTGTAAACTTGAACTCGGCTGATTTCTGCACTCTCGGCCGCAGGATTTCCAGCTTCAAAGATGTACATAAAGCAGGTGATT
ATTGAGGGTTTCAAAAGTTACAAGGAGCAGGTTGCGACAGAGCCATTTAGTCCTAAGCATAATTGTGTGGTTGGCGCCAATGGGTCAGGGAAGACAAATTTTTTTCATGCTATACGGTTTGTTCTCAGTGACTTATTCCACAATCTCCGTGCTGAAGATAGACAAGCACTGTTACATGAAGGTGCAGGCCATCAAGTATT
GTCAGCATTTGTGGAGATAGTTTTTGATAACTCCGATAATCGCATTCCAGTTGACAGGGAGGAGGTGCGTTTGCGAAGGACTATTGGTTTGAAAAAAGACGAGTACTTTTTGGACAAAAAACATATCACGAAAACGGAGGTTATGAATCTGTTAGAAAGTGCTGGGTTTTCTCGTTCAAATCCATACTATGTTGTGCAAC
AGGGAAAGATTGCTTCCTTAACATTAATGAAAGACGCAGAACGATTGGATTTGCTCAAGGAAATAGGGGGTACCCGTGTATATGAGGAGCGACGCAAGGAAAGTTTAAAAATTATGCAGGAAACTGAAAACAAGAGGAAACAAATTATTGAAGTTGTTCAGTACATTGAGGAAAGATTAAAGGAACTCGATGAAGAGAAG
GAAGAACTGAAAAAATACCAGCAATTGGACAAGCAACGAAGGTCACTGGAGTATACAATTTTTGAAAAGGAATTGCAGGATGCAAAGACGAAACTAGAGGAGATTGAAGAAGCTCGAACTAAAGTATCTGAAAAATCAACAAGCATGTATAATAGTGTTCTTGAGGCGCATGAGCGTTTTAAGACATTGGAGAAAGATCT
GAAAAATTTAAGCAAGGAATCTCAAGTCATGGTGAAGGAGAAGGATGCTGCAGAGAAGCGAAAAACAGAAGCGATGAAAAGACATGCAAAAGTTGAGCTGGATGTCAGAGATTTAGAAGAGAAAATCAATGGCGAAGGACGGATGAAGGAAGATGTAGCGAAGGAACTAAAAGGCCTTGAAAAAGAGATTCAAAAACAAA
GAAGAGAACTGGAAAAGGTTAGGCCCTTGCACGAACAGCAATTGATTGAAGAAGAGGAGATAACTAGAGGGATTATGGAACGCGAAAAGCAACTGAGTCTTTTGTACCAAAAACAAGGACGTGCAACACAATTTTCAACCAAAGCCGCCAGAGACAAGTGGTTGCAGAAAGAGATTGATGATCTACAGCGTGTACTATCA
TCAACTACAGCTCAGGAAGAAAAGCTCCAGGAGGAGATAGGACAACTCAATGAAGAGTTTGCCCAACAGGAGAAAAATATAGAAGTTCGCTCATCAGAATTGCAGGATCAAGAGTCACTTATTTCCAAGTGCCAGGGAGATTTTGCTACTCTTAAAATAGAGAGGGATGAACTACAAGAGACTAGAAAGAAACTCTGGAA
ACAGGAGAATCAACTCACGTCCGAAATTGATAGATTAAAGTCAGAAATTGTGAAGGCAGAAAAAAGCTTGGACCATGCTGCTCCTGGTGACATAAGAAGGGGCCTTAATTCAGTCAGAAGAATTTGCAGGGATCACAGCATCCCTGGTGTGTTTGGTCCACTCTGTGAATTGCTGGATTGCGATGATAAATTTTTTACTG
CTGTGGAAGTTACTGCTGGGAATAGTTTGTTTCATGTTGTAGTAGAATCAGATGAGATCTCAACCAGAATAATCAGATACCTAACTGCTGAGAAAGGTGGGAGGGTGACTTTTATGCCTCTGAATCGAATCAGAGCTCCACATGTTAATTATCCACATAATCCAGATGTTGTTCCTCTGCTGAAGAAACTGAAATTCTCG
TCACGGTTTGCACCTGCTTTTGCTCAGGTTTTTGCAAGAACGGTCATCTGTCGTGACTTGGATGTCGCTACAAAGGTTGCTCGGACTGATGGATTGGATTGTATCACAATGGAAGGCGATCAAGTGAGCAAAAAAGGTGGCATGACAGGAGGCTTTTATGACTATAGAAGGTCAAAATTAAAACTTATGAACGTTATTAG
ACAGAACACGAAGGCTATAAATTCAAAGCAAGAGGAATTGGCAAACGTCAGGACTTCTATTCAAGAGATAGACCAGAGGATTACAACAATTGTCAGTGAACAGCAGAAGACGGATGCAAAACGGGGTCATCATAAATCTGAGTTGGAGCAACTTAAGCATGATATTGCTAATGCCACAAAGCAACGGATGTCTATATCTA
AGGCTCTTGAAAAGAAGAAAAAGTTGCTTGCAAATGCTCATAATCAAATTGATCAGCTTAGAGCAGGCATGGCGATGAAACGAGCAGAAATGGGTACTGAACTCATTGATCAGTTGACCCCTGAAGAGAAGGCTCTACTTTCCCAATTAAATCCTGAGATTACACAGTTCAAAGAGAAACGTATTTTGTGCAAGAGAAAT
AGAATTGAGACTGAGACAAGGAAGAGTGAACTTGAGACGAATCTATCAACGAATCTTGTCAGACGACAACAAGAGTTAGAAGCACAGCTTGTGTCTGCTGATTCAGAATCTTTGTCTGCTGAGCTTGAGCTTAAATTGCAGGAGCTAAGAGATGCAAAGGCATCTGTTGATGAAGCTGCCCAGCAGCTAAAAGCAATTAC
AGACCAAATAGAAAATTACACGAAACAAATAAGAGATATGAAGAATGCAAAAGATGAATTGAAGGCATTGGAAGACAACTATGAGCGCACACTTCAGGATGAAGCAAAAGACCTTGAACAACTTCTAAATAAGCGAAACCTTCTTCAGGCAAAACGAGAAGATTACATGAAGAAAATTCGAGAATTGGGTTCACTGCCAT
CAGATGCATTTGAAAAATACAAGCGCAAGAATCTTAAAGAATTGCACAAAATGCTTCACAAATGCAATGAGCAGCTTAAAAAGTTCAGTCATGTCAACAAGAAAGCATTGGATCAATATGTCAATTTTACAGAACAAAGAGAGGAGTTACATAAAAGACAAGCAGAACTTGATGCTGGTGATGAGAAAATCAGAGAATTA
ATTTCAGTCTTGGACCAACGTAAGGATGAATCCATTGAGAGGACATTTAAAGGTGTGGCAAAGAACTTTAGGGAAGCATTTTCAGAGCTTGTACAAGGTGGGCACGGTTCTCTCGTAATGATGAAGAAAAAGAAGGCTGGTGAGGTTGATGATGATGATCATGATGATGATGGATATCGAGATTCAGATCCTGATGCAAG
GGTAGAGAAGTACATAGGTGTTAAAGTGAGGgtaaggttactgccaacctaagaagaatacgcaatcaggtcattgatcttttttgttcttttaacttgtgtgaatatgcctgttttctcaaaaacttgagcttctgaagGTTTCATTTACGG