NA ----> NA

Intron 1 GTAAGTTCAA ... TATCTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	26.67	33	2	12
A2	15	17	0	3
A3	37.04	17	0	10
A4	23.08	10	1	3
A5	33.33	14	1	7
A6	22.18	221	1	63
A7	25.31	180	0	61
A8	22.64	246	0	72
A9	27.42	180	0	68
A10	24.06	101	0	32

>TRINITY_DN92988_c0_g1_i5 from sample A4 / Example spliced isoform

CCCGTTTGGCACATATATGCGAGGAAGTCCTTGCAATACACAGCCATGGGGGCAACCGGTGTACTTGCGATAAGTATAGCGCTACCATCTGCTAAAACCACATTCAATCGTCCCACCTCTAAATATGGCGCGTCCTACCAAAATTTGACCACAGGAAACGGCAGAATATTATCACCATGGCAGGCTTTGCCCTTCCACAG
GCAGCGATCGAGCAGACAGGGCTTGATTTCAACCAATGGGAGGCGTCCGACGACAATGGCGTGGCAGGATAACACGGCTCGAGTGGAAGTTGATGTCCCTTTGTCTGTGGCCTGGGAATTGTGGTCTGACAGGGAAGGTGTGAACCGTTGGATGCCTTGGATTGCTTCCGTAAAGATCTTAAAGGATCAGCCAGAGCTGT
CAGAATGGACTTTGAAATATAATGCATTTGGCAGGGATCTTGAATTTTCTTGGCTTGCTCGCAATCTGCAGCCAATCCAAAATCAGAAGATACACTGGCGTTCTTTAGATGGTCTTCCAAATAGAGGAGCTGTGCGCTTTTATCCTAGGGGTCCAGCTTCATGTGGTGTGGAACTTACTATATCTTATGAAGTTCCCGAA
ATCCTTTCAGGTGTTGCTTCAGGACTATCCCCCTTGGTTGAGAATATTCTTCAAAGAGATTTGGAACGCTTTGCATCATTTGCAAAAAAATATCAATCCAAATCTTCACTTAAATAAGTGTGGTGCTATAAGTGCGGTGTTGTTCAAGAATAAAGATAGTTGTTTCAAAAGCTTGATATGTGTTGATGGC

>TRINITY_DN92988_c0_g1_i1 from sample A4 / Example unspliced isoform:

GCTTCATGTGGTGTGGAAgtaagttcaattctatagactgctgaaactttaattcatcatgttaatggaatttttctctcattgtttaaaacgttggctattatgatattctgctacccatactaattaaagatcagtgctctattggcaagatatttttttctattagaagtccttacaatattcaagttggagctgag
ctaaattatcttgcagCTTACTATATCTTATGAAGTTCCCGAAATCCTTTCAGGTGTTGCTTCAGGACTATCCCCCTTGGTTGAGAATATTCTTCAAAGAGATTTGGAACGCTTTGCATCATTTGCAAAAAAATATCAATCCAAATCTTCACTTAAATAAGTGTGGTGCTATAAGTGCGGTGTTGTTCAAGAATAAAGAT
AGTTGTTTCAAAAGCTTGATATGTGTTGATGGC

Intron 2 GTAAGTTCAA ... TATTGGCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	28.57	15	2	6
A2	0	2	0	0
A3	0	3	0	0
A4	41.67	7	1	5
A5	33.33	8	1	4
A6	19.81	85	1	21
A7	18.07	68	0	15
A8	17.54	94	0	20
A9	19.82	89	0	22
A10	12.96	47	0	7

>TRINITY_DN92988_c0_g1_i3 from sample A4 / Example spliced isoform

CCCGTTTGGCACATATATGCGAGGAAGTCCTTGCAATACACAGCCATGGGGGCAACCGGTGTACTTGCGATAAGTATAGCGCTACCATCTGCTAAAACCACATTCAATCGTCCCACCTCTAAATATGGCGCGTCCTACCAAAATTTGACCACAGGAAACGGCAGAATATTATCACCATGGCAGGCTTTGCCCTTCCACAG
GCAGCGATCGAGCAGACAGGGCTTGATTTCAACCAATGGGAGGCGTCCGACGACAATGGCGTGGCAGGATAACACGGCTCGAGTGGAAGTTGATGTCCCTTTGTCTGTGGCCTGGGAATTGTGGTCTGACAGGGAAGGTGTGAACCGTTGGATGCCTTGGATTGCTTCCGTAAAGATCTTAAAGGATCAGCCAGAGCTGT
CAGAATGGACTTTGAAATATAATGCATTTGGCAGGGATCTTGAATTTTCTTGGCTTGCTCGCAATCTGCAGCCAATCCAAAATCAGAAGATACACTGGCGTTCTTTAGATGGTCTTCCAAATAGAGGAGCTGTGCGCTTTTATCCTAGGGGTCCAGCTTCATGTGGTGTGGAAATATTTTTTTCTATTAGAAGTCCTTAC
AATATTCAAGTTGGAGCTGAGCTAAATTATCTTGCAGCTTACTATATCTTATGAAGTTCCCGAAATCCTTTCAGGTGTTGCTTCAGGACTATCCCCCTTGGTTGAGAATATTCTTCAAAGAGATTTGGAACGCTTTGCATCATTTGCAAAAAAATATCAATCCAAATCTTCACTTAAATAAGTGTGGTGCTATAAGTGCG
GTGTTGTTCAAGAATAAAGATAGTTGTTTCAAAAGCTTGATATGTGTTGATGGC

>TRINITY_DN92988_c0_g1_i1 from sample A4 / Example unspliced isoform:

GCTTCATGTGGTGTGGAAgtaagttcaattctatagactgctgaaactttaattcatcatgttaatggaatttttctctcattgtttaaaacgttggctattatgatattctgctacccatactaattaaagatcagtgctctattggcaagATATTTTTTTCTATTAGAAGTCCTTACAATATTCAAGTTGGAGCTGAG
CTAAATTATCTTGCAGCTTACTATATCTTATGAAGTTCCCGAAATCCTTTCAGGTGTTGCTTCAGGACTATCCCCCTTGGTTGAGAATATTCTTCAAAGAGATTTGGAACGCTTTGCATCATTTGCAAAAAAATATCAATCCAAATCTTCACTTAAATAAGTGTGGTGCTATAAGTGCGGTGTTGTTCAAGAATAAAGAT
AGTTGTTTCAAAAGCTTGATATGTGTTGATGGC