NA ----> NA
Intron 1 GTGAGTCATG ... GAATGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.82 | 30 | 14 | 2 |
| A2 | 33.33 | 10 | 5 | 8 |
| A3 | 10 | 18 | 2 | 4 |
| A4 | 26 | 37 | 13 | 2 |
| A5 | 25 | 3 | 1 | 2 |
| A6 | 32.35 | 23 | 11 | 0 |
| A7 | 21.54 | 51 | 14 | 0 |
| A8 | 26.53 | 36 | 13 | 0 |
| A9 | 22.5 | 31 | 9 | 0 |
| A10 | 30.56 | 50 | 22 | 1 |
>TRINITY_DN122840_c4_g1_i1 from sample A1 / Example spliced isoformTTTCTTTTGACTGTACGTTCTTGTTTACAAATATCTCTGCTCCCTCGTATCTTTATATAGTTAAAACGAGGACTTGTCTTCAATCCCGTTCTTTCTCACGTCTCGTGTTCGATTCCGTCCATTGTTGTTTCACCTGTTAAAACCACACCAGGAAACGAAGCAGAGCAGCCGACATCTCTCAACTTCCATCAAAATGCACT
TCATCAGGAGGAAAACCCTTGCCTGGGCCAGTCAGATTTCCAGAACCACGACGGGCCACGCATCCTGTCAATTTAACCAGGCATTGTGCTCAAAGGCAGCCTTGAGTGAAGTGCGAGCATTGCATGGCGCAAGTTCAAAAGGGAGTGTAATAGAGGGAAAGATGGATGATGGGAAAGATGAAGATTGCCAGCAATTAAGC
AGTGGACAGGCACTAGAAAGTGAGATGTTAAGTTGTGATAATCCTCAAGCTCTTGTGAATAGTGCTGTGACCGAAGGTGAAACTGCAAAAATTCAAAGAGAGTTTGATGCTGCGAGAGAGAGTTTCCAAAACATTCCTGCAGCACTTCGTATGATGCCCAAAATGGATCCATGTGGTGTTTATGCAAATGACAATTTAAG
ATTGGATCAACTTGAAGTATATGGATTTGATTATGATTATACATTGGCTCATTACAGTGGCAACTTACAAACATTAATCTATGATCTTGCAAAGGAGCATATTGTCAAAGAGCACAGATATCCAAAAAGCTGCTTACAGTTTCAGTATGATCCCGAGTTCCCTATAAGAGGGCTTTTTTATGACAAAAAGAATGGATGTT
TATTGAAGTTGGACTTTTTCCACAATATTGAACCTGATGGATGCTACTATGGACGCCGTAAGATGAGCAGGGAAGAACTTGAACACATTTATGGAAGCAGGCATGTAAGCAGAGATTATTCTTCAAATCTTGTTGGTCTTATGGACCTGTTTTGCTTCAGCGAGGCATGCCTTATATCAGACATTATTCAGCATTTTGTT
GATGAAAGGCTGGACTTTGATGCATGTTATGTTTACGAAGATGTGAAGCGCGCAATCGGCTATGTTCATCAAAGTGGGCTTGTTCATAGAAGAATTCTTGCAGAGCCAGATAAATATTTGGTGAAAAATGCTGCAGTGTTGAAATTCTTGAGAACACTAAGAGAAAGGGGGAAGAAACTCTTTTTGTTGACAAACTCACC
ATTCTATTTTGTAGATGGGGGGATGCGCTTTATGTTCCAGGATTTTGGGGTTAAAGGGGATTCATGGCTTGACTTGTTCGAAGTGGTGATTGCTCTTTCTGACAAACCAAATTTCTACACTTCAGATCGGCCTTTCAGGCGCTATGACATGGAGAAGGATATTGTAACATTTTCAAAGGTCAATGCATTCCAACCTCATA
CAGTTTATTATCACGGATGCTTGAAGTCTTTTCTTGAAATAACAAAATGGAAAGGGTCTGAGGTGATATATTTTGGTGACCACTTATTCAGTGATTTAAGAGGACCTACAAAGGCTGGATGGCGAACTGCTGCTATAATTAAGGAACTCGAGAAGGAAATAATGACGCAAAATAAAGATAAATATCGCTTTCAACAAGCT
AAATTCCACATAGTACAAGAATTTCTGGGAAAATTTCACTCGTTGCTAACAAAAAAGCCAAGAAAAGATGAAGACAATGTTCTCCTGAATGCATTAAATGAAGAACGACAAAAGTCACGTTCTGCAATGAAGGCTATGTTCAATCCTTACTTTGGTGCAGCCTTTCTTACAGACACAGGAAGGGAGTCTGCCTTTGCTTA
TAATATCCAACGATATGCCGACGTGTATACAAGCAAACTAGAAAATTTTTTGAACTACTCAAGTGAAGCTTGGCTGGATCCACCCTATGATGTCAAGATCATGCCACATCATGTGAAGATACCATCAAGTGTGTTGAAGACCAAGGCTCAGCAGGAGGGTTAGCTTGACTTTTTCAATTTATGCTTTCAACGAGACACAA
CTATGCAGATACCATCAAGTGTGTGGAAGACCAAGGCTCAGAAGGAGGGTTAGCTTGACTTTTTCAATTTGTGCTTTCAAAAGATGCAACTTTGTTGAAATTGTAGATTATTTGTTGCAACGAGCATCCAATTTTGTCATCCTCATATTTTTGGGATATCGATAGTTAATTCCTGTACGTAAACTCTTGAGGTGTCTCTT
TTTAATGTAACATTACATAAAAGGCGAAATGGTCTTCCTTGAGGATCTAAATATCAAAATTCTAGCATCATCATGAGTCATGGGCTGTGTGATTTGCTTATTTGATATTTTATCTTATTTGAAAGAATTCCATTGACCCATTTTGATCATTTGTGGAAATTAATATACTT
>TRINITY_DN122840_c4_g1_i11 from sample A1 / Example unspliced isoform:TTTCTTTTGACTGTACGTTCTTGTTTACAAATATCTCTGCTCCCTCGTATCTTTATATAGTTAAAACGAGGACTTGTCTTCAATCCCGTTCTTTCTCACGTCTCGTGTTCGATTCCGTCCATTGTTGTTTCACCTGTTAAAACCACACCAGGAAACGAAGCAGAGCAGCCGACATCTCTCAACTTCCATCAAAATGCACT
TCATCAGGAGGAAAACCCTTGCCTGGGCCAGTCAGATTTCCAGAACCACGACGGGCCACGCATCCTGTCAATTTAACCAGGCATTGTGCTCAAAGGCAGCCTTGAGTGAAGTGCGAGCATTGCATGGCGCAAGTTCAAAAGGGAGTGTAATAGAGGGAAAGATGGATGATGGGAAAGATGAAGATTGCCAGCAATTAAGC
AGTGGACAGGCACTAGAAAGTGAGATGTTAAGTTGTGATAATCCTCAAGCTCTTGTGAATAGTGCTGTGACCGAAGGTGAAACTGCAAAAATTCAAAGAGAGTTTGATGCTGCGAGAGAGAGTTTCCAAAACATTCCTGCAGCACTTCGTATGATGCCCAAAATGGATCCATGTGGTGTTTATGCAAATGACAATTTAAG
ATTGGATCAACTTGAAGTATATGGATTTGATTATGATTATACATTGGCTCATTACAGTGGCAACTTACAAACATTAATCTATGATCTTGCAAAGGAGCATATTGTCAAAGAGCACAGATATCCAAAAAGCTGCTTACAGTTTCAGTATGATCCCGAGTTCCCTATAAGAGGGCTTTTTTATGACAAAAAGAATGGATGTT
TATTGAAGTTGGACTTTTTCCACAATATTGAACCTGATGGATGCTACTATGGACGCCGTAAGATGAGCAGGGAAGAACTTGAACACATTTATGGAAGCAGGCATGTAAGCAGAGATTATTCTTCAAATCTTGTTGGTCTTATGGACCTGTTTTGCTTCAGCGAGGCATGCCTTATATCAGACATTATTCAGCATTTTGTT
GATGAAAGGCTGGACTTTGATGCATGTTATGTTTACGAAGATGTGAAGCGCGCAATCGGCTATGTTCATCAAAGTGGGCTTGTTCATAGAAGAATTCTTGCAGAGCCAGATAAATATTTGGTGAAAAATgtgagtcatgttatttgaaacaccagctctttgatgaaatgatgatgctcatgaccacatatcagtagatt
catttttctgtgcttttgatatcccaatatggcacgctaattagatagagggtcttctgataattgtgcaatggactggtgatcccttaaattttaatataactagcatgtttccaaaacctaatgtttctggtgtcaagtgagatgacttacaaaagcattgctgatgctgatgggatctgctgcatctgatggtttac
ttatgtctttaagtcatgatcatcaacacttttttgctaagtagggaatgctaattcaaaacattaagaatacatgaaaaatgaagccttcagttagcagatcattgaaattatatctgccttattgtcattaagaatagggaaaatgctttcggtgctgacatggatttgttacattttgaatggacagGCTGCAGTGT
TGAAATTCTTGAGAACACTAAGAGAAAGGGGGAAGAAACTCTTTTTGTTGACAAACTCACCATTCTATTTTGTAGATGGGGGGATGCGCTTTATGTTCCAGGTTGGTTCCTTATTCCATAACTATGTCCTCATTCACAGTCCTTTTTTTTGGAAGAACAGTCTTAAAAACAGAATTTTGAAAGTACACTACATGCATTTG
AGGGCTTTGCTCTCTCTGCCTGAGGCAGGCCAGAAAAGCCAACTTGTCTGACTCTTCCCTACCATCAACATTCATAACATAATCTCTAAGAACATGACTCTAGTAGATATTAGATTTGACTCGTTTTCTAGATCATCCAGGAGCCTATGAAAGACTATGCTCCCATAAGTACTTCTGCTGCCTTAAAAGGAAGTACGATG
AATAGATTGCAGCAAGGGGAAGGTTGTAAATCTTAGTGTGGACCAGGAGGGCCAAAAAACTGCATATTGCAAGTTTGAATCATCAAGAAGTGCTGCCCTCCATTGCAGAGGCCTTAGAAACACGGAGGAGAGATGCAGAGTATCCTCCTTTTATTAAGAGGATGTTTGTAGCTCCAGGCTTTGAGATTATGCCTTTGTAA
TGGTAATCAAGTATATATAATAATGTCTATACAAAAATGTATTTACAGTAAAGGAAGCAAGCAGAATCTAGAGCTGCTGTTTGAAAATCCATGGATCACAAGTTAGCATGTATATGCTATAATTGTTGACATTTGGTAGACAAAAGACTGTAGAAGCATGTGTGGTTTGTGTCTTATACATGAGAATCTATAGATAAGGA
AAAGTAGGCAGTGAATACTTTTATACCTTGAGAGATTAAAACAATTCAGTCATGAAAGAAACCTTGTTCTGCAGGTCTCACAGCTG
Intron 2 GCTGCAGTGT ... TATGTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.76 | 8 | 30 | 20 |
| A2 | 68.63 | 8 | 10 | 25 |
| A3 | 89.19 | 2 | 18 | 15 |
| A4 | 77.46 | 8 | 37 | 18 |
| A5 | 84.62 | 1 | 3 | 8 |
| A6 | 62.07 | 11 | 23 | 13 |
| A7 | 81.82 | 12 | 51 | 57 |
| A8 | 77.19 | 13 | 36 | 52 |
| A9 | 79.31 | 9 | 31 | 38 |
| A10 | 68.12 | 22 | 50 | 44 |
>TRINITY_DN116476_c5_g4_i2 from sample A2 / Example spliced isoformCGAGGACTTGTCTTCAATCCCGTTCTTTCTCACGTCTCGTGTTCGATTCCGTCCATTGTTGTTTCACCTGTTAAAACCACACCAGGAAACGAAGCAGAGCAGCCGACATCTCTCAACTTCCATCAAAATGCACTTCATCAGGAGGAAAACCCTTGCCTGGGCCAGTCAGATTTCCAGAACCACGACGGGCCACGCATCCT
GTCAATTTAACCAGGCATTGTGCTCAAAGGCAGCCTTGAGTGAAGTGCGAGCATTGCATGGCGCAAGTTCAAAAGGGAGTGTAATAGAGGGAAAGATGGATGATGGGAAAGATGAAGATTGCCAGCAATTAAGCAGTGGACAGGCACTAGAAAGTGAGATGTTAAGTTGTGATAATCCTCAAGCTCTTGTGAATAGTGCT
GTGACCGAAGGTGAAACTGCAAAAATTCAAAGAGAGTTTGATGCTGCGAGAGAGAGTTTCCAAAACATTCCTGCAGCACTTCGTATGATGCCCAAAATGGATCCATGTGGTGTTTATGCAAATGACAATTTAAGATTGGATCAACTTGAAGTATATGGATTTGATTATGATTATACATTGGCTCATTACAGTGGCAACTT
ACAAACATTAATCTATGATCTTGCAAAGGAGCATATTGTCAAAGAGCACAGATATCCAAAAAGCTGCTTACAGTTTCAGTATGATCCCGAGTTCCCTATAAGAGGGCTTTTTTATGACAAAAAGAATGGATGTTTATTGAAGTTGGACTTTTTCCACAATATTGAACCTGATGGATGCTACTATGGACGCCGTAAGATGA
GCAGGGAAGAACTTGAACACATTTATGGAAGCAGGCATGTAAGCAGAGATTATTCTTCAAATCTTGTTGGTCTTATGGACCTGTTTTGCTTCAGCGAGGCATGCCTTATATCAGACATTATTCAGCATTTTGTTGATGAAAGGCTGGACTTTGATGCATGTTATGTTTACGAAGATGTGAAGCGCGCAATCGGCTATGTT
CATCAAAGTGGGCTTGTTCATAGAAGAATTCTTGCAGAGCCAGATAAATATTTGGTGAAAAATGATTTTGGGGTTAAAGGGGATTCATGGCTTGACTTGTTCGAAGTGGTGATTGCTCTTTCTGACAAACCAAATTTCTACACTTCAGATCGGCCTTTCAGG
>TRINITY_DN116476_c5_g4_i3 from sample A2 / Example unspliced isoform:CGAGGACTTGTCTTCAATCCCGTTCTTTCTCACGTCTCGTGTTCGATTCCGTCCATTGTTGTTTCACCTGTTAAAACCACACCAGGAAACGAAGCAGAGCAGCCGACATCTCTCAACTTCCATCAAAATGCACTTCATCAGGAGGAAAACCCTTGCCTGGGCCAGTCAGATTTCCAGAACCACGACGGGCCACGCATCCT
GTCAATTTAACCAGGCATTGTGCTCAAAGGCAGCCTTGAGTGAAGTGCGAGCATTGCATGGCGCAAGTTCAAAAGGGAGTGTAATAGAGGGAAAGATGGATGATGGGAAAGATGAAGATTGCCAGCAATTAAGCAGTGGACAGGCACTAGAAAGTGAGATGTTAAGTTGTGATAATCCTCAAGCTCTTGTGAATAGTGCT
GTGACCGAAGGTGAAACTGCAAAAATTCAAAGAGAGTTTGATGCTGCGAGAGAGAGTTTCCAAAACATTCCTGCAGCACTTCGTATGATGCCCAAAATGGATCCATGTGGTGTTTATGCAAATGACAATTTAAGATTGGATCAACTTGAAGTATATGGATTTGATTATGATTATACATTGGCTCATTACAGTGGCAACTT
ACAAACATTAATCTATGATCTTGCAAAGGAGCATATTGTCAAAGAGCACAGATATCCAAAAAGCTGCTTACAGTTCAGTATGATCCCGAGTTCCCTATAAGAGGGCTTTTTTATGACAAAAAGAATGGATGTTTATTGAAGTTGGACTTTTTCCACAATATTGAACCTGATGGATGCTACTATGGACGCCGTAAGATGAG
CAGGGAAGAACTTGAACACATTTATGGAAGCAGGCATGTAAGCAGAGATTATTCTTCAAATCTTGTTGGTCTTATGGACCTGTTTTGCTTCAGCGAGGCATGCCTTATATCAGACATTATTCAGCATTTTGTTGATGAAAGGCTGGACTTTGATGCATGTTATGTTTACGAAGATGTGAAGCGCGCAATCGGCTATGTTC
ATCAAAGTGGGCTTGTTCATAGAAGAATTCTTGCAGAGCCAGATAAATATTTGGTGAAAAATgctgcagtgttgaaattcttgagaacactaagagaaagggggaagaaactctttttgttgacaaactcaccattctattttgtagatggggggatgcgctttatgttccagGATTTTGGGGTTAAAGGGGATTCATGG
CTTGACTTGTTCGAAGTGGTGATTGCTCTTTCTGACAAACCAAATTTCTACACTTCAGATCGGCCTTTCAGGCGCTATGACATGGAGAAGGATATTGTAACATTTTCAAAGGTCAATGCATTCCAACCTCATACAGTTTATTATCACGGATGCTTGAAGTCTTTTCTTGAAATAACAAAATGGAAAGGGTCTGAGGTGAT
ATATTTTGGTGACCACTTATTCAGTGATTTAAGAGGACCTACAAAGGCTGGATGGCGAACTGCTGCTATAATTAAGGAACTCGAGAAGGAAATAATGACGCAAAATAAAGATAAATATCGCTTTCAACAAGCTAAATTCCACATAGTACAAGAATTTCTGGGAAAATTTCACTCGTTGCTAACAAAAAAGCCAAGAAAAG
ATGAAGACAATGTTCTCCTGAATGCATTAAATGAAGAACGACAAAAGTCACGTTCTGCAATGAAGGCTATGTTCAATCCTTACTTTGGTGCAGCCTTTCTTACAGACACAGGAAGGGAGTCTGCCTTTGCTTATAATATCCAACGATATGCCGACGTGTATACAAGCAAACTAGAAAATTTTTTGAACTACTCAAGTGAA
GCTTGGCTGGATCCACCCTATGATGTCAAGATCATGCCACATCATGTGAAGATACCATCAAGTGTGTTGAAGACCAAGGCTCAGCAGGAGGGTTAGCTTGACTTTTTCAATTTATGCTTTCAACGAGACACAACTATGCAGATACCATCAAGTGTGTGGAAGACCAAGGCTCAGAAGGAGGGTTAGCTTGACTTTTTCAA
TTT
Intron 3 GTTACTGATT ... ATTGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.88 | 25 | 8 | 6 |
| A2 | 36.59 | 26 | 23 | 7 |
| A3 | 29.27 | 29 | 12 | 12 |
| A4 | 23.4 | 18 | 8 | 3 |
| A5 | 20 | 6 | 2 | 1 |
| A6 | 11.48 | 27 | 6 | 1 |
| A7 | 16.02 | 97 | 19 | 18 |
| A8 | 18.14 | 88 | 25 | 14 |
| A9 | 15.7 | 94 | 13 | 22 |
| A10 | 20.93 | 68 | 25 | 11 |
>TRINITY_DN122840_c4_g1_i1 from sample A1 / Example spliced isoformTTTCTTTTGACTGTACGTTCTTGTTTACAAATATCTCTGCTCCCTCGTATCTTTATATAGTTAAAACGAGGACTTGTCTTCAATCCCGTTCTTTCTCACGTCTCGTGTTCGATTCCGTCCATTGTTGTTTCACCTGTTAAAACCACACCAGGAAACGAAGCAGAGCAGCCGACATCTCTCAACTTCCATCAAAATGCACT
TCATCAGGAGGAAAACCCTTGCCTGGGCCAGTCAGATTTCCAGAACCACGACGGGCCACGCATCCTGTCAATTTAACCAGGCATTGTGCTCAAAGGCAGCCTTGAGTGAAGTGCGAGCATTGCATGGCGCAAGTTCAAAAGGGAGTGTAATAGAGGGAAAGATGGATGATGGGAAAGATGAAGATTGCCAGCAATTAAGC
AGTGGACAGGCACTAGAAAGTGAGATGTTAAGTTGTGATAATCCTCAAGCTCTTGTGAATAGTGCTGTGACCGAAGGTGAAACTGCAAAAATTCAAAGAGAGTTTGATGCTGCGAGAGAGAGTTTCCAAAACATTCCTGCAGCACTTCGTATGATGCCCAAAATGGATCCATGTGGTGTTTATGCAAATGACAATTTAAG
ATTGGATCAACTTGAAGTATATGGATTTGATTATGATTATACATTGGCTCATTACAGTGGCAACTTACAAACATTAATCTATGATCTTGCAAAGGAGCATATTGTCAAAGAGCACAGATATCCAAAAAGCTGCTTACAGTTTCAGTATGATCCCGAGTTCCCTATAAGAGGGCTTTTTTATGACAAAAAGAATGGATGTT
TATTGAAGTTGGACTTTTTCCACAATATTGAACCTGATGGATGCTACTATGGACGCCGTAAGATGAGCAGGGAAGAACTTGAACACATTTATGGAAGCAGGCATGTAAGCAGAGATTATTCTTCAAATCTTGTTGGTCTTATGGACCTGTTTTGCTTCAGCGAGGCATGCCTTATATCAGACATTATTCAGCATTTTGTT
GATGAAAGGCTGGACTTTGATGCATGTTATGTTTACGAAGATGTGAAGCGCGCAATCGGCTATGTTCATCAAAGTGGGCTTGTTCATAGAAGAATTCTTGCAGAGCCAGATAAATATTTGGTGAAAAATGCTGCAGTGTTGAAATTCTTGAGAACACTAAGAGAAAGGGGGAAGAAACTCTTTTTGTTGACAAACTCACC
ATTCTATTTTGTAGATGGGGGGATGCGCTTTATGTTCCAGGATTTTGGGGTTAAAGGGGATTCATGGCTTGACTTGTTCGAAGTGGTGATTGCTCTTTCTGACAAACCAAATTTCTACACTTCAGATCGGCCTTTCAGGCGCTATGACATGGAGAAGGATATTGTAACATTTTCAAAGGTCAATGCATTCCAACCTCATA
CAGTTTATTATCACGGATGCTTGAAGTCTTTTCTTGAAATAACAAAATGGAAAGGGTCTGAGGTGATATATTTTGGTGACCACTTATTCAGTGATTTAAGAGGACCTACAAAGGCTGGATGGCGAACTGCTGCTATAATTAAGGAACTCGAGAAGGAAATAATGACGCAAAATAAAGATAAATATCGCTTTCAACAAGCT
AAATTCCACATAGTACAAGAATTTCTGGGAAAATTTCACTCGTTGCTAACAAAAAAGCCAAGAAAAGATGAAGACAATGTTCTCCTGAATGCATTAAATGAAGAACGACAAAAGTCACGTTCTGCAATGAAGGCTATGTTCAATCCTTACTTTGGTGCAGCCTTTCTTACAGACACAGGAAGGGAGTCTGCCTTTGCTTA
TAATATCCAACGATATGCCGACGTGTATACAAGCAAACTAGAAAATTTTTTGAACTACTCAAGTGAAGCTTGGCTGGATCCACCCTATGATGTCAAGATCATGCCACATCATGTGAAGATACCATCAAGTGTGTTGAAGACCAAGGCTCAGCAGGAGGGTTAGCTTGACTTTTTCAATTTATGCTTTCAACGAGACACAA
CTATGCAGATACCATCAAGTGTGTGGAAGACCAAGGCTCAGAAGGAGGGTTAGCTTGACTTTTTCAATTTGTGCTTTCAAAAGATGCAACTTTGTTGAAATTGTAGATTATTTGTTGCAACGAGCATCCAATTTTGTCATCCTCATATTTTTGGGATATCGATAGTTAATTCCTGTACGTAAACTCTTGAGGTGTCTCTT
TTTAATGTAACATTACATAAAAGGCGAAATGGTCTTCCTTGAGGATCTAAATATCAAAATTCTAGCATCATCATGAGTCATGGGCTGTGTGATTTGCTTATTTGATATTTTATCTTATTTGAAAGAATTCCATTGACCCATTTTGATCATTTGTGGAAATTAATATACTT
>TRINITY_DN122840_c4_g1_i10 from sample A1 / Example unspliced isoform:TTTCTTTTGACTGTACGTTCTTGTTTACAAATATCTCTGCTCCCTCGTATCTTTATATAGTTAAAACGAGGACTTGTCTTCAATCCCGTTCTTTCTCACGTCTCGTGTTCGATTCCGTCCATTGTTGTTTCACCTGTTAAAACCACACCAGGAAACGAAGCAGAGCAGCCGACATCTCTCAACTTCCATCAAAATGCACT
TCATCAGGAGGAAAACCCTTGCCTGGGCCAGTCAGATTTCCAGAACCACGACGGGCCACGCATCCTGTCAATTTAACCAGGCATTGTGCTCAAAGGCAGCCTTGAGTGAAGTGCGAGCATTGCATGGCGCAAGTTCAAAAGGGAGTGTAATAGAGGGAAAGATGGATGATGGGAAAGATGAAGATTGCCAGCAATTAAGC
AGTGGACAGGCACTAGAAAGTGAGATGTTAAGTTGTGATAATCCTCAAGCTCTTGTGAATAGTGCTGTGACCGAAGGTGAAACTGCAAAAATTCAAAGAGAGTTTGATGCTGCGAGAGAGAGTTTCCAAAACATTCCTGCAGCACTTCGTATGATGCCCAAAATGGATCCATGTGGTGTTTATGCAAATGACAATTTAAG
ATTGGATCAACTTGAAGTATATGGATTTGATTATGATTATACATTGGCTCATTACAGTGGCAACTTACAAACATTAATCTATGATCTTGCAAAGGAGCATATTGTCAAAGAGCACAGATATCCAAAAAGCTGCTTACAGTTTCAGTATGATCCCGAGTTCCCTATAAGAGGGCTTTTTTATGACAAAAAGAATGGATGTT
TATTGAAGTTGGACTTTTTCCACAATATTGAACCTGATGGATGCTACTATGGACGCCGTAAGATGAGCAGGGAAGAACTTGAACACATTTATGGAAGCAGGCATGTAAGCAGAGATTATTCTTCAAATCTTGTTGGTCTTATGGACCTGTTTTGCTTCAGCGAGGCATGCCTTATATCAGACATTATTCAGCATTTTGTT
GATGAAAGGCTGGACTTTGATGCATGTTATGTTTACGAAGATGTGAAGCGCGCAATCGGCTATGTTCATCAAAGTGGGCTTGTTCATAGAAGAATTCTTGCAGAGCCAGATAAATATTTGGTGAAAAATGCTGCAGTGTTGAAATTCTTGAGAACACTAAGAGAAAGGGGGAAGAAACTCTTTTTGTTGACAAACTCACC
ATTCTATTTTGTAGATGGGGGGATGCGCTTTATGTTCCAGGATTTTGGGGTTAAAGGGGATTCATGGCTTGACTTGTTCGAAGTGGTGATTGCTCTTTCTGACAAACCAAATTTCTACACTTCAGATCGGCCTTTCAGgttactgattacatattgaacaatgagaaggaaatacgtacttgaatagtgtcaaagaagaa
aaagcaagtacatgaaaatggcaaatataaaggacatttctgaccataaaacaaatgaaaggtacataatggttttctgtttaattttggttgtactttgaattagggtctgggatattttcttaagtacgcatacatgttatactaaagagagaaaagtagccttttgggattgggatttgcatattcttattcaggtc
attataacattgattcagGCGCTATGACATGGAGAAGGATATTGTAACATTTTCAAAGGTCAATGCATTCCAACCTCATACAGTTTATTATCACGGATGCTTGAAGTCTTTTCTTGAAATAACAAAATGGAAAGGGTCTGAGGTAGGCAGTTTTGATCGCTATAATGTCCTTCCTTTTTCCTTTTGACCTGTTTTATGTA
TGGCATGTCAAGTTTTTATTATGTTTTGTGTTGAATTTAATCATGAAAGTATGGTGC
Intron 4 GTTACTGATT ... CAAATGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.02 | 25 | 6.8 | 5 |
| A2 | 41.17 | 26 | 22.4 | 14 |
| A3 | 27.29 | 29 | 9.9 | 12 |
| A4 | 18.69 | 18 | 5.6 | 3 |
| A5 | 20 | 6 | 2 | 1 |
| A6 | 13.45 | 27 | 5.4 | 3 |
| A7 | 19.24 | 97 | 16.3 | 30 |
| A8 | 19.24 | 88 | 21.1 | 21 |
| A9 | 13.99 | 94 | 9.7 | 21 |
| A10 | 23.83 | 68 | 21.7 | 21 |
>TRINITY_DN116476_c5_g4_i3 from sample A2 / Example spliced isoformCGAGGACTTGTCTTCAATCCCGTTCTTTCTCACGTCTCGTGTTCGATTCCGTCCATTGTTGTTTCACCTGTTAAAACCACACCAGGAAACGAAGCAGAGCAGCCGACATCTCTCAACTTCCATCAAAATGCACTTCATCAGGAGGAAAACCCTTGCCTGGGCCAGTCAGATTTCCAGAACCACGACGGGCCACGCATCCT
GTCAATTTAACCAGGCATTGTGCTCAAAGGCAGCCTTGAGTGAAGTGCGAGCATTGCATGGCGCAAGTTCAAAAGGGAGTGTAATAGAGGGAAAGATGGATGATGGGAAAGATGAAGATTGCCAGCAATTAAGCAGTGGACAGGCACTAGAAAGTGAGATGTTAAGTTGTGATAATCCTCAAGCTCTTGTGAATAGTGCT
GTGACCGAAGGTGAAACTGCAAAAATTCAAAGAGAGTTTGATGCTGCGAGAGAGAGTTTCCAAAACATTCCTGCAGCACTTCGTATGATGCCCAAAATGGATCCATGTGGTGTTTATGCAAATGACAATTTAAGATTGGATCAACTTGAAGTATATGGATTTGATTATGATTATACATTGGCTCATTACAGTGGCAACTT
ACAAACATTAATCTATGATCTTGCAAAGGAGCATATTGTCAAAGAGCACAGATATCCAAAAAGCTGCTTACAGTTCAGTATGATCCCGAGTTCCCTATAAGAGGGCTTTTTTATGACAAAAAGAATGGATGTTTATTGAAGTTGGACTTTTTCCACAATATTGAACCTGATGGATGCTACTATGGACGCCGTAAGATGAG
CAGGGAAGAACTTGAACACATTTATGGAAGCAGGCATGTAAGCAGAGATTATTCTTCAAATCTTGTTGGTCTTATGGACCTGTTTTGCTTCAGCGAGGCATGCCTTATATCAGACATTATTCAGCATTTTGTTGATGAAAGGCTGGACTTTGATGCATGTTATGTTTACGAAGATGTGAAGCGCGCAATCGGCTATGTTC
ATCAAAGTGGGCTTGTTCATAGAAGAATTCTTGCAGAGCCAGATAAATATTTGGTGAAAAATGCTGCAGTGTTGAAATTCTTGAGAACACTAAGAGAAAGGGGGAAGAAACTCTTTTTGTTGACAAACTCACCATTCTATTTTGTAGATGGGGGGATGCGCTTTATGTTCCAGGATTTTGGGGTTAAAGGGGATTCATGG
CTTGACTTGTTCGAAGTGGTGATTGCTCTTTCTGACAAACCAAATTTCTACACTTCAGATCGGCCTTTCAGGCGCTATGACATGGAGAAGGATATTGTAACATTTTCAAAGGTCAATGCATTCCAACCTCATACAGTTTATTATCACGGATGCTTGAAGTCTTTTCTTGAAATAACAAAATGGAAAGGGTCTGAGGTGAT
ATATTTTGGTGACCACTTATTCAGTGATTTAAGAGGACCTACAAAGGCTGGATGGCGAACTGCTGCTATAATTAAGGAACTCGAGAAGGAAATAATGACGCAAAATAAAGATAAATATCGCTTTCAACAAGCTAAATTCCACATAGTACAAGAATTTCTGGGAAAATTTCACTCGTTGCTAACAAAAAAGCCAAGAAAAG
ATGAAGACAATGTTCTCCTGAATGCATTAAATGAAGAACGACAAAAGTCACGTTCTGCAATGAAGGCTATGTTCAATCCTTACTTTGGTGCAGCCTTTCTTACAGACACAGGAAGGGAGTCTGCCTTTGCTTATAATATCCAACGATATGCCGACGTGTATACAAGCAAACTAGAAAATTTTTTGAACTACTCAAGTGAA
GCTTGGCTGGATCCACCCTATGATGTCAAGATCATGCCACATCATGTGAAGATACCATCAAGTGTGTTGAAGACCAAGGCTCAGCAGGAGGGTTAGCTTGACTTTTTCAATTTATGCTTTCAACGAGACACAACTATGCAGATACCATCAAGTGTGTGGAAGACCAAGGCTCAGAAGGAGGGTTAGCTTGACTTTTTCAA
TTT
>TRINITY_DN116476_c5_g4_i7 from sample A2 / Example unspliced isoform:TGAAACACCAGCTCGTTGATGAAATGATGATGCTCATGACCACATATCAGTAGATTCATTTTTCTGTGCTTTTGATATCCCAATATGGCACGCTAATTAGATAGAGGGTCTTCTGATAATTGTGCAATGGACTGGTGATCCCTTAAATTTTAATATAACTAGCATGTTTCCAAAACCTAATGTTTCTGGTGTCAAGTGAG
ATGACTTACAAAAGCATTGCTGATGCTGATGGGATCTGCTGCATCTGATGGTTTACTTATGTCTTTAAGTCATGATCATCAACACTTTTTTGCTAAGTAGGGAATGCTAATTCAAAACATTAAGAATACATGAAAAATGAAGCCTTCAGTTAGCAGATCATTGAAATTATATCTGCCTTATTGTCATTAAGAATAGGGAA
AATGCTTTCGGTGCTGTGTGAGTCATGTTATTTGAAACACCAGCTCTTTGATGAAATGATGATGCTCATGACCACATATCAGTAGATTCATTTTTCTGTGCTTTTGATATCCCAATATGGCACGCTAATTAGATAGAGGGTCTTCTGATAATTGTGCAATGGACTGGTGATCCCTTAAATTTTAATATAACTAGCATGTT
TCCAAAACCTAATGTTTCTGGTGTCAAGTGAGATGACTTACAAAAGCATTGCTGATGCTGATGGGATCTGCTGCATCTGATGGTTTACTTATGTCTTTAAGTCATGATCATCAACACTTTTTTGCTAAGTAGGGAATGCTAATTCAAAACATTAAGAATACATGAAAAATGAAGCCTTCAGTTAGCAGATCATTGAAATT
ATATCTGCCTTATTGTCATTAAGAATAGGGAAAATGCTTTCGGTGCTGACATGGATTTGTTACATTTTGAATGGACAGGCTGCAGTGTTGAAATTCTTGAGAACACTAAGAGAAAGGGGGAAGAAACTCTTTTTGTTGACAAACTCACCATTCTATTTTGTAGATGGGGGGATGCGCTTTATGTTCCAGGATTTTGGGGT
TAAAGGGGATTCATGGCTTGACTTGTTCGAAGTGGTGATTGCTCTTTCTGACAAACCAAATTTCTACACTTCAGATCGGCCTTTCAGgttactgattacatattgaacaatgagaaggaaatacgtacttgaatagtgtcaaagaagaaaaagcaagtacatgaaaatggcaaatataaaggacatttctgaccataaaa
caaatgaaagGCGCTATGACATGGAGAAGGATATTGTAACATTTTCAAAGGTCAATGCATTCCAACCTCATACAGTTTATTATCACGGATGCTTGAAGTCTTTTCTTGAAATAACAAAATGGAAAGGGTCTGAGGTGATATATTTTGGTGACCACTTATTCAGTGATTTAAGAGGACCTACAAAGGCTGGATGGCGAACT
GCTGCTATAATTAAGGAACTCGAGAAGGAAATAATGACGCAAAATAAAGATAAATATCGCTTTCAACAAGCTAAATTCCACATAGTACAAGAATTTCTGGGAAAATTTCACTCGTTGCTAACAAAAAAGCCAAGAAAAGATGAAGACAATGTTCTCCTGAATGCATTAAATGAAGAACGACAAAAGTCACGTTCTGCAAT
GAAGGCTATGTTCAATCCTTACTTTGGTGCAGCCTTTCTTACAGACACAGGAAGGGAGTCTGCCTTTGCTTATAATATCCAACGATATGCCGACGTGTATACAAGCAAACTAGAAAATTTTTTGAACTACTCAAGTGAAGCTTGGCTGGATCCACCCTATGATGTCAAGATCATGCCACATCATGTGAAGATACCATCAA
GTGTGTTGAAGACCAAGGCTCAGCAGGAGGGTTAGCTTGACTTTTTCAATTTATGCTTTCAACGAGACACAACTATGCAGATACCATCAAGTGTGTGGAAGACCAAGGCTCAGAAGGAGGGTTAGCTTGACTTTTTCAATTT