NA ----> NA
Intron 1 GTCATATTTG ... AAATTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.92 | 8 | 28.2 | 15 |
| A2 | 82.04 | 1 | 6.2 | 3 |
| A3 | 53.77 | 5 | 4.7 | 7 |
| A4 | 71.32 | 6 | 10.8 | 19 |
| A5 | 32.3 | 4 | 3.8 | 0 |
| A6 | 61.75 | 8 | 8.8 | 17 |
| A7 | 54.04 | 14 | 11.9 | 21 |
| A8 | 53.55 | 9 | 7.8 | 13 |
| A9 | 49.56 | 17 | 13.5 | 20 |
| A10 | 51.52 | 20 | 12.5 | 30 |
>TRINITY_DN40004_c0_g1_i4 from sample A6 / Example spliced isoformACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCACAGTAGTTGATGCTCATTAATATGACTATTCGCAG
AGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATGACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTG
CAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTGCTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCAAGCTTTAGACTCCATAAACCAGTATCGGCTGTCA
CTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTGCTTTTCAATTTTACATTGCACAGCACTGTTGCAC
AAGTTGTTCAAAATCTAGCCCAAATGAAAAATCAATTGAAGATTGGCTTATTTGTGCGACCAAATGAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAACTCCTCCAAGACTAAGGCAGTTGGCTCATGAAATC
ACTCCTGCAAGGAATTTAGGGCTAAATCACACTCTTTTTGGCAAAGTAAAGCAAATTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCCCATCAACCCGCCCTTTTGCTTCCATACCCCCCTC
TAAAGGACAACGTGCCGTGGCTCCATCTCCCGACTACAGTGGCCATGCACCCATTCACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATGCCCCCATATCATCACCGTGTAGGTGCACCCTCTT
ATCATCATCCCCTCATGCATTGTGATTGGCATCATGCTTCTGATCGTTCTAAATGTGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGATGTGGGAGCAGCTCCAGGACCTCTTTTTGTGACT
TCTGTACCTCCTGCCATTTCTCCGCAGTATGGTCCTCCTAAAGCCCAACATCGGAATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTTTTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGAGGCTTTGGGCTTATCTCCTCATTTCTCATTTCTCTCACC
AGAAGGCTTGACTCATTCTGCACCTCCAGAAATGAGTAAGATGCCTCATTCTGCACCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCTCCAGTTCCAGCCTTCTCATATGTTTCAGCTTCGACATATGGTCGAAGTCCTGTTCAGTGGATCATTGTGTCACTGGTTTTAACCGAAACTGTTT
TATATTTGTCAGTTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAGTTGGAATTATTACATTTTTTCCATCATGTGATTCTGTTTTCGGGAGTTCTCATTTATCTTTATCAGAATAAAGTTACTAGCAAGATTCCAGCTGTTGAGCATGCTGCCTAATCTGGTTTCTAATGACAGGAACTTGTGATAGAAAGCACAAA
TTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACTTACACTGTTGTCATTTGAGCTTTAGAATAGCAAGTTGAGCAACATCCAATTCAGAATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCATATCCGTCTGTATATAAGTGCTGCTTGTTTACAT
AAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCATGATCACATCTATTTCTAATAATATGGTGAACTATGAAATCCCCATCGGGGTTTTTGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCATGATGAAGTCTCTTTCCTATTTTGTGGCATATCCC
TGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACTCAACTAACCTTTTCAAAGCTGGTTGTGATGTTGCCAATTCTTTATCATGGCATCTCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAATGGTTATTTATTTTTCTTGGTGTGTAATCGAAGC
ATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGGCCTCGGTTGTTTTGCTCTAGACTTTCTTATTTTATGGCTAATGAATTTGTCTCCTACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATTCCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGA
AATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCCCGTCGTTTAAAATTTTAAACCGTTTACTGGTTTATCTATAG
>TRINITY_DN40004_c0_g1_i8 from sample A6 / Example unspliced isoform:ACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCACAGTAGTTGATGCTCATTAATATGACTATTCGCAG
AGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATGACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTG
CAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTGCTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCAAGCTTTAGACTCCATAAACCAGTATCGGCTGTCA
CTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGgtcatatttggtgttcttccagattcaaagaacacatcaatttcatcatatggcctcatttcgctaaaggaaacatttataactctacta
ttagggagttataatatttctctagcatcagaggctttagggtttgcttattttttccaaatgttgaaatttccagGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTGCTTTTCAATTTTACATTGCACAGCACTGTTGCACAAGTTGTTCAAAATCTAGCCCAAATGAAAAATCA
ATTGAAGATTGGCTTATTTGTGCGACCAAATGAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAACTCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTC
TTTTTGGCAAAGTAAAGCAAATTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCCCATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGAC
TACAGTGGCCATGCACCCATTCACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATGCCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCA
TGCTTCTGATCGTTCTAAATGTGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGATGTGGGAGCACCTCCAGGACCTCTTGTTGTGAATCC
Intron 2 GTTTGTTATC ... GTAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 16 | 9 | 3 |
| A2 | 38.46 | 4 | 2 | 3 |
| A3 | 0 | 1 | 0 | 0 |
| A4 | 22.22 | 7 | 0 | 4 |
| A5 | 20 | 6 | 2 | 1 |
| A6 | 29.73 | 13 | 7 | 4 |
| A7 | 26.47 | 25 | 5 | 13 |
| A8 | 28.3 | 19 | 3 | 12 |
| A9 | 27.87 | 22 | 7 | 10 |
| A10 | 40 | 9 | 6 | 6 |
>TRINITY_DN44299_c0_g1_i4 from sample A7 / Example spliced isoformGAAACCCTACGCGACAAGCCCCTCACAACCCGCCACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCAC
AGTAGTTGATGCTCATTAATATGACTATTCGCAGAGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATG
ACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTGCAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTACTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCA
AGCTTTAGACTCCATAAACCAGTATCGGCTGTCACTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTG
CTTTTCAATTTTACATTGCACAGCACTGTTGCACAAGTTGTTCAAAATCTAGCCCAAATGAAAAATCAATTGAAGATTGGCTTATTTGTGCGACCAAATGAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAAC
TCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTCTTTTTGGCAAAGTAAAGCAAATTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCC
CATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGACTACAGTGGCCATGCACCCATTCACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATG
CCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCATGCTTCTGATCGTTCTAAATGTGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGA
TGTGGGAGCAGCTCCAGGACCTCTTGTTGTGAATTCTGTACCTCCTGCCATTTCTCCGCAGTATGGTCCTCCTAAAGCCCAACATCGGAATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTTTTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGATGCTT
TGGGCTTATCTCCTCATTTCTCATTTCTCTCACCAGAAGGCTTGACTCATTCTGCACCTCCAGAAATGAGTAAGATGCCTCATTCTGCATCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCTCCAGTTCCAGCCTTCTCATATGTTTCAGCTTCGACATATGGTCGAAGTCCTGTTCAGTGG
ATCATTGTGTCACTGGTTTTAACCGAAACTGTTTTATATTTGTCAGTTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAGTTGGAATTATTACATTTTTTCCATCATGTGATTCTGTTTTCGGGAGTTCTCATTTATCTTTATCAGAATAAAGTTACTAGCAAGATTCCAGCTGTTGAGCATGCTGCCTAATCTGGTT
TCTAATGACAGGAACTTGTGATAGAAAGCACAAATTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACTTACACTGTTGTCATTTGAGCTTTAGAATAGCAAGTTGAGCAACATCCAATTCAGAATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCA
TATCCGTCTGTATATAAGTGCTGCTTGTTTACATAAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCATGATCACATCTATTTCTAATAATATGGTGAACTATGAAATCCCCATCGGGGTTTTTGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCAT
GATGAAGTCTCTTTCCTATTTTGTGGCATATCCCTGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACTCAACTAACCTTTTCAAAGCTGGTTGTGATGTTGCCAATTCTTTATCATGGCATCTCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAA
TGGTTATTTATTTTTCTTGGTGTGTAATCGAAGCATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGGCCTCGGTTGTTTTGCTTTAGACTTTCTTATTTTATGGCTAATGAATTTGTCTCCTACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATT
CCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGAAATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCCCGC
>TRINITY_DN44299_c0_g1_i6 from sample A7 / Example unspliced isoform:GAAACCCTACGCGACAAGCCCCTCACAACCCGCCACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCAC
AGTAGTTGATGCTCATTAATATGACTATTCGCAGAGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATG
ACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTGCAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTACTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCA
AGCTTTAGACTCCATAAACCAGTATCGGCTGTCACTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGTCATATTTGGTGTTCTTCCAGATTCAAAGAACACATCAATTTCATCATATGGCCT
CATTTCGCTAAAGGAAACATTTATAACTCTACTATTAGGGAGTTATAATATTTCTCTAGCATCAGAGGCTTTAGGGTTTGCTTATTTTTTCCAAATGTTGAAATTTCCAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTGCTTTTCAATTTTACATTGCACAGCACTGTTGCAC
AAGTTGTTCAAAATCTAGCCCAAATGAAAAATCAATTGAAGATTGGCTTATTTGTGCGACCAAATGAGgtttgttatcaatgtttccatttcagacttttgtttttcctgatgcatctgtgatttttatgacaatttactgtctaaatcttagtttttgtaaattgtttacaaatatattttggattattatgtgttatg
cctgtaaatgcagAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAACTCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTCTTTTTGGCAAAGTAAAGCAAA
TTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCCCATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGACTACAGTGGCCATGCACCCATT
CACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATGCCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCATGCTTCTGATCGTTCTAAATG
TGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGATGTGGGAGCAGCTCCAGGACCTCTTGTTGTGAATTCTGTACCTCCTGCCATTTCTCCGCAGTATGGTCCTCCTAAAGCCCAACATCGGA
ATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTTTTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGATGCTTTGGGCTTATCTCCTCATTTCTCATTTCTCTCACCAGAAGGCTTGACTCATTCTGCACCTCCAGAAATGAGTAAGATGCCTCATTCTGCA
TCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCTCCAGTTCCAGCCTTCTCATATGTTTCAGCTTCGACATATGGTCGAAGTCCTGTTCAGTGGATCATTGTGTCACTGGTTTTAACCGAAACTGTTTTATATTTGTCAGTTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAGTTGGAAT
TATTACATTTTTTCCATCATGTGATTCTGTTTTCGGGAGTTCTCATTTATCTTTATCAGAATAAAGTTACTAGCAAGATTCCAGCTGTTGAGCATGCTGCCTAATCTGGTTTCTAATGACAGGAACTTGTGATAGAAAGCACAAATTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACT
TACACTGTTGTCATTTGAGCTTTAGAATAGCAAGTTGAGCAACATCCAATTCAGAATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCATATCCGTCTGTATATAAGTGCTGCTTGTTTACATAAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCAT
GATCACATCTATTTCTAATAATATGGTGAACTATGAAATCCCCATCGGGGTTTTTGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCATGATGAAGTCTCTTTCCTATTTTGTGGCATATCCCTGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACT
CAACTAACCTTTTCAAAGCTGGTTGTGATGTTGCCAATTCTTTATCATGGCATCTCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAATGGTTATTTATTTTTCTTGGTGTGTAATCGAAGCATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGG
CCTCGGTTGTTTTGCTTTAGACTTTCTTATTTTATGGCTAATGAATTTGTCTCCTACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATTCCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGAAATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCC
CGC
Intron 3 GTGAGTTCAG ... CCCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.65 | 10 | 3.1 | 10 |
| A2 | 20 | 2 | 0 | 1 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 23.08 | 15 | 2 | 7 |
| A5 | 33.33 | 2 | 1 | 1 |
| A6 | 35.71 | 9 | 2 | 8 |
| A7 | 28.1 | 38 | 13 | 16.7 |
| A8 | 24.44 | 34 | 11 | 11 |
| A9 | 28.09 | 32 | 9 | 16 |
| A10 | 25.93 | 20 | 3 | 11 |
>TRINITY_DN44299_c0_g1_i4 from sample A7 / Example spliced isoformGAAACCCTACGCGACAAGCCCCTCACAACCCGCCACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCAC
AGTAGTTGATGCTCATTAATATGACTATTCGCAGAGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATG
ACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTGCAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTACTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCA
AGCTTTAGACTCCATAAACCAGTATCGGCTGTCACTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTG
CTTTTCAATTTTACATTGCACAGCACTGTTGCACAAGTTGTTCAAAATCTAGCCCAAATGAAAAATCAATTGAAGATTGGCTTATTTGTGCGACCAAATGAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAAC
TCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTCTTTTTGGCAAAGTAAAGCAAATTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCC
CATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGACTACAGTGGCCATGCACCCATTCACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATG
CCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCATGCTTCTGATCGTTCTAAATGTGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGA
TGTGGGAGCAGCTCCAGGACCTCTTGTTGTGAATTCTGTACCTCCTGCCATTTCTCCGCAGTATGGTCCTCCTAAAGCCCAACATCGGAATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTTTTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGATGCTT
TGGGCTTATCTCCTCATTTCTCATTTCTCTCACCAGAAGGCTTGACTCATTCTGCACCTCCAGAAATGAGTAAGATGCCTCATTCTGCATCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCTCCAGTTCCAGCCTTCTCATATGTTTCAGCTTCGACATATGGTCGAAGTCCTGTTCAGTGG
ATCATTGTGTCACTGGTTTTAACCGAAACTGTTTTATATTTGTCAGTTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAGTTGGAATTATTACATTTTTTCCATCATGTGATTCTGTTTTCGGGAGTTCTCATTTATCTTTATCAGAATAAAGTTACTAGCAAGATTCCAGCTGTTGAGCATGCTGCCTAATCTGGTT
TCTAATGACAGGAACTTGTGATAGAAAGCACAAATTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACTTACACTGTTGTCATTTGAGCTTTAGAATAGCAAGTTGAGCAACATCCAATTCAGAATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCA
TATCCGTCTGTATATAAGTGCTGCTTGTTTACATAAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCATGATCACATCTATTTCTAATAATATGGTGAACTATGAAATCCCCATCGGGGTTTTTGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCAT
GATGAAGTCTCTTTCCTATTTTGTGGCATATCCCTGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACTCAACTAACCTTTTCAAAGCTGGTTGTGATGTTGCCAATTCTTTATCATGGCATCTCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAA
TGGTTATTTATTTTTCTTGGTGTGTAATCGAAGCATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGGCCTCGGTTGTTTTGCTTTAGACTTTCTTATTTTATGGCTAATGAATTTGTCTCCTACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATT
CCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGAAATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCCCGC
>TRINITY_DN44299_c0_g1_i5 from sample A7 / Example unspliced isoform:GAAACCCTACGCGACAAGCCCCTCACAACCCGCCACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCAC
AGTAGTTGATGCTCATTAATATGACTATTCGCAGAGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATG
ACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTGCAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTACTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCA
AGCTTTAGACTCCATAAACCAGTATCGGCTGTCACTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGTCATATTTGGTGTTCTTCCAGATTCAAAGAACACATCAATTTCATCATATGGCCT
CATTTCGCTAAAGGAAACATTTATAACTCTACTATTAGGGAGTTATAATATTTCTCTAGCATCAGAGGCTTTAGGGTTTGCTTATTTTTTCCAAATGTTGAAATTTCCAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTGCTTTTCAATTTTACATTGCACAGCACTGTTGCAC
AAGTTGTTCAAAATCTAGCCCAAATGAAAAATCAATTGAAGATTGGCTTATTTGTGCGACCAAATGAGGTTTGTTATCAATGTTTCCATTTCAGACTTTTGTTTTTCCTGATGCATCTGTGATTTTTATGACAATTTACTGTCTAAATCTTAGTTTTTGTAAATTGTTTACAAATATATTTTGGATTATTATGTGTTATG
CCTGTAAATGCAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAACTCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTCTTTTTGGCAAAGTAAAGCAAA
TTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCCCATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGACTACAGTGGCCATGCACCCATT
CACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATGCCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCATGCTTCTGATCGTTCTAAATG
TGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGATGTGGGAGCAGCTCCAGGACCTCTTGTTGTGAATTCTGTACCTCCTGCCATTTCTCCGCAGTATGGTCCTCCTAAAGCCCAACATCGGA
ATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTTTTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGATGCTTTGGGCTTATCTCCTCATTTCTCATTTCTCTCACCAGAAGGCTTGACTCATTCTGCACCTCCAGAAATGAGTAAGATGCCTCATTCTGCA
TCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCTCCAGTTCCAGCCTTCTCATATGTTTCAGCTTCGAgtgagttcagtgtagccttattctgatgtttttatgaacttttatcttcagaataaacatgcgatgccttaagctgttatagctcgagtgcacagtctatggggcatctttcaag
ttctgaagattgttttgttttcccttcgcagCATATGGTCGAAGTCCTGTTCAGTGGATCATTGTGTCACTGGTTTTAACCGAAACTGTTTTATATTTGTCAGTTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAGTTGGAATTATTACATTTTTTCCATCATGTGATTCTGTTTTCGGGAGTTCTCATTTATCTTT
ATCAGAATAAAGTTACTAGCAAGATTCCAGCTGTTGAGCATGCTGCCTAATCTGGTTTCTAATGACAGGAACTTGTGATAGAAAGCACAAATTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACTTACACTGTTGTCATTTGAGCTTTAGAATAGCAAGTTGAGCAACATCCAATTCAG
AATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCATATCCGTCTGTATATAAGTGCTGCTTGTTTACATAAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCATGATCACATCTATTTCTAATAATATGGTGAACTATGAAATCCCCATCGGGGTTTT
TGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCATGATGAAGTCTCTTTCCTATTTTGTGGCATATCCCTGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACTCAACTAACCTTTTCAAAGCTGGTTGTGATGTTGCCAATTCTTTATCATGGCATC
TCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAATGGTTATTTATTTTTCTTGGTGTGTAATCGAAGCATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGGCCTCGGTTGTTTTGCTTTAGACTTTCTTATTTTATGGCTAATGAATTTGTCTCC
TACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATTCCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGAAATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCCCGC
Intron 4 GTTGGAATTA ... CTAATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.3 | 7 | 17.2 | 16 |
| A2 | 67.53 | 5 | 5.8 | 15 |
| A3 | 100 | 0 | 8.8 | 10 |
| A4 | 63.36 | 8 | 16.4 | 12 |
| A5 | 79.56 | 1 | 3.8 | 4 |
| A6 | 76.11 | 11 | 29.4 | 41 |
| A7 | 70.22 | 26 | 54 | 70 |
| A8 | 70.68 | 29 | 48.2 | 92 |
| A9 | 67.7 | 34 | 56 | 87 |
| A10 | 66.83 | 30 | 40.2 | 81 |
>TRINITY_DN40004_c0_g1_i6 from sample A6 / Example spliced isoformAAGGGATTCTCCAGTTCCAGCCTACTCATATGTTTCAGCTTCGAGTGAGTTCAGTGTAGCCTTATTCTGATGTTTTTATGAACTTTTATCTTCAGAATAAACATGCGATGCCTTAAGCTGTTATAGCTCGAGTGCACAGTCTATGGGGCATCTTTCAAGTTCTGAAGATTGTTTTGTTTTCCCTTCGCAGCATATGGTCG
AAGTCCTGTTCAGTGGATCATTGTGTCACTGGTTTTAACCGAAACTGTTTTATATTTGTCAGTTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAGAACTTGTGATAGAAAGCACAAATTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACTTACACTGTTGTCATTTGAGCTTTAG
AATAGCAAGTTGAGCAACATCCAATTCAGAATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCATATCCGTCTGTATATAAGTGCTGCTTGTTTACATAAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCATGATCACATCTATTTCTAATAATATG
GTGAACTATGAAATCCCCATCGGGGTTTTTGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCATGATGAAGTCTCTTTCCTATTTTGTGGCATATCCCTGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACTCAACTAACCTTTTCAAAGCTGGTTG
TGATGTTGCCAATTCTTTATCATGGCATCTCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAATGGTTATTTATTTTTCTTGGTGTGTAATCGAAGCATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGGCCTCGGTTGTTTTGCTCTAGACTTT
CTTATTTTATGGCTAATGAATTTGTCTCCTACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATTCCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGAAATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCCCGTCGTTTAAAATTTTAAACCGTTT
ACTGGTTTATCTATAG
>TRINITY_DN40004_c0_g1_i7 from sample A6 / Example unspliced isoform:ACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCACAGTAGTTGATGCTCATTAATATGACTATTCGCAG
AGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATGACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTG
CAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTGCTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCAAGCTTTAGACTCCATAAACCAGTATCGGCTGTCA
CTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGTCATATTTGGTGTTCTTCCAGATTCAAAGAACACATCAATTTCATCATATGGCCTCATTTCGCTAAAGGAAACATTTATAACTCTACTA
TTAGGGAGTTATAATATTTCTCTAGCATCAGAGGCTTTAGGGTTTGCTTATTTTTTCCAAATGTTGAAATTTCCAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTGCTTTTCAATTTTACATTGCACAGCACTGTTGCACAAGTTGTTCAAAATCTAGCCCAAATGAAAAATCA
ATTGAAGATTGGCTTATTTGTGCGACCAAATGAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAACTCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTC
TTTTTGGCAAAGTAAAGCAAATTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCCCATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGAC
TACAGTGGCCATGCACCCATTCACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATGCCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCA
TGCTTCTGATCGTTCTAAATGTGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGATGTGGGAGCAGCTCCAGGACCTCTTTTTGTGACTTCTGTACCTCCTGCCATTTCTCCGCAGTATGGTC
CTCCTAAAGCCCAACATCGGAATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTTTTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGAGGCTTTGGGCTTATCTCCTCATTTCTCATTTCTCTCACCAGAAGGCTTGACTCATTCTGCACCTCCAGAAATG
AGTAAGATGCCTCATTCTGCACCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCTCCAGTTCCAGCCTTCGCATATGTTTCAGCTTCGATTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAgttggaattattacattttttccatcatgtgattctgttttcgggagttctcatttatc
tttatcagaataaagttactagcaagattccagctgttgagcatgctgcctaatctggtttctaatgacagGAACTTGTGATAGAAAGCACAAATTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACTTACACTGTTGTCATTTGAGCTTTAGAATAGCAAGTTGAGCAACATCCAATT
CAGAATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCATATCCGTCTGTATATAAGTGCTGCTTGTTTACATAAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCATGATCACATCTATTTCTAATAATATGGTGAACTATGAAATCCCCATCGGGGT
TTTTGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCATGATGAAGTCTCTTTCCTATTTTGTGGCATATCCCTGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACTCAACTAACCTTTTCAAAGCTGGTTGTGATGTTGCCAATTCTTTATCATGGC
ATCTCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAATGGTTATTTATTTTTCTTGGTGTGTAATCGAAGCATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGGCCTCGGTTGTTTTGCTCTAGACTTTCTTATTTTATGGCTAATGAATTTGTC
TCCTACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATTCCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGAAATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCCCGTCGTTTAAAATTTTAAACCGTTTACTGGTTTATCTATAG
Intron 5 GTGAAATAGA ... GAATGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.74 | 30.3 | 0 | 10 |
| A2 | 22.22 | 14.3 | 1 | 7 |
| A3 | 4.76 | 10 | 1 | 0 |
| A4 | 48.63 | 6 | 4 | 7 |
| A5 | 8.62 | 5.3 | 0 | 1 |
| A6 | 8.58 | 10.7 | 1 | 1 |
| A7 | 34.43 | 20 | 11 | 10 |
| A8 | 10.16 | 13.3 | 1 | 2 |
| A9 | 10.16 | 31 | 3 | 4 |
| A10 | 22.11 | 24.7 | 10 | 4 |
>TRINITY_DN44299_c0_g1_i4 from sample A7 / Example spliced isoformGAAACCCTACGCGACAAGCCCCTCACAACCCGCCACCACGAGCTCAGTACGGGAAAATGGATTAGCCTAGGGAGGGAACGGTGACCAAACAACCACTCAAAGCTTACAAACCTCTGCTCCCCTTTTCAGGCTTTTTATAACGTTTCTTAGCTGTAAGATCCGTTCAAGCCTGCAGATCCAAATGAAATGACATGGCTCAC
AGTAGTTGATGCTCATTAATATGACTATTCGCAGAGCCAAAACCTACTTGAGATTCGAGGAGACAAGCATAATAACCCATGTTACACCCTCTTCTCGGTTCGCAATGTGGAGTAATCAGATCTACCAATGCTTTAGCAGCTGACATTGTTATCTTCTGGCATGATGGGGAAAACGAACGAGGGTTCGAATCCCACCAATG
ACGAGGAAGAGGGTAATGCAGATTGTAGCTGCTGCAGCGCTTGTGCTTCAAATGTCTGTTCTATAACAACCTTGAAATGGGTCGTTGCTGTGGCTGTGAGTTTGAACTTGTTAGTTTTTGTGGTACTGTCCTTTCCCATCTCCGGCAAGGGCAATGGGAGGCCTGCACCAGGAAAAGACCCTCAAGTTCAAATAGAGGCA
AGCTTTAGACTCCATAAACCAGTATCGGCTGTCACTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGGTAACAGTGATATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTG
CTTTTCAATTTTACATTGCACAGCACTGTTGCACAAGTTGTTCAAAATCTAGCCCAAATGAAAAATCAATTGAAGATTGGCTTATTTGTGCGACCAAATGAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAACTGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAAC
TCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTCTTTTTGGCAAAGTAAAGCAAATTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATGTTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCC
CATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGACTACAGTGGCCATGCACCCATTCACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGTGGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATG
CCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCATGCTTCTGATCGTTCTAAATGTGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACCCTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGA
TGTGGGAGCAGCTCCAGGACCTCTTGTTGTGAATTCTGTACCTCCTGCCATTTCTCCGCAGTATGGTCCTCCTAAAGCCCAACATCGGAATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTTTTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGATGCTT
TGGGCTTATCTCCTCATTTCTCATTTCTCTCACCAGAAGGCTTGACTCATTCTGCACCTCCAGAAATGAGTAAGATGCCTCATTCTGCATCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCTCCAGTTCCAGCCTTCTCATATGTTTCAGCTTCGACATATGGTCGAAGTCCTGTTCAGTGG
ATCATTGTGTCACTGGTTTTAACCGAAACTGTTTTATATTTGTCAGTTTGAGGAAGGAGAAAGGAGCTTAAAGGCTGATAAGTTGGAATTATTACATTTTTTCCATCATGTGATTCTGTTTTCGGGAGTTCTCATTTATCTTTATCAGAATAAAGTTACTAGCAAGATTCCAGCTGTTGAGCATGCTGCCTAATCTGGTT
TCTAATGACAGGAACTTGTGATAGAAAGCACAAATTTGTGTCTCTCTTCCAGCAACTTCTACAAGGGCCAATGTTGGGTTGTGGCAACTTACACTGTTGTCATTTGAGCTTTAGAATAGCAAGTTGAGCAACATCCAATTCAGAATGATCCTAAATCAGTCAAGGTGGGATATGCTATTGGGTTTTGTAATGGAAGGGCA
TATCCGTCTGTATATAAGTGCTGCTTGTTTACATAAAAATGTAAGCAAATATGTATTTTCTGGTCAAAGCTGCAAAGGTGGCAGGCCATGATCACATCTATTTCTAATAATATGGTGAACTATGAAATCCCCATCGGGGTTTTTGGTTTCATAAGAAGTTCCCTTGCTTCCAAAGTTTTTTCTTGCAATAAGTTCAGCAT
GATGAAGTCTCTTTCCTATTTTGTGGCATATCCCTGGGGTGGGATTTTATTCCACATTAATACAACTCTACTCCTGGACACTGGCTACTCAACTAACCTTTTCAAAGCTGGTTGTGATGTTGCCAATTCTTTATCATGGCATCTCCCATAATCCTGTGGGAAGGCAATGTAAGGTGGCTTCTTTGTCTTGGATCCAAAAA
TGGTTATTTATTTTTCTTGGTGTGTAATCGAAGCATTTGTTCTGCGGATTTGTGCTGTGATGCATGTTATTGCAGAAGAAAACTTTGGGCCTCGGTTGTTTTGCTTTAGACTTTCTTATTTTATGGCTAATGAATTTGTCTCCTACGAAAATATCTACAGGCACAGATAAGCTATCTTGAGATTAGAATTGCAGGACATT
CCTTGTACAAGCCATGGTGGAGTTTCTTTTTTGAAATTGCATGCATGTATTTTTGGAGTAATTTGGAGCTTTAATATTTTCCTTTCTCCCGC
>TRINITY_DN44299_c0_g1_i3 from sample A7 / Example unspliced isoform:GCTCTTTTAAATTTCTTACAACTCCTGAAATAAGGTCCCCTTTCATTTTTTCTTATCCTTTTGTATGTCGTAGCATTTATAGATCCAAGGGTCAAATTTATGTTTTTGTTTTCCTCCATTCATTTGCACTATTCATTATCCACCCATCTGATGCGTAGATTCATTTTATTGCCTTTGATTGCATTTCTCAGTTCAAATAG
AGGCAAGCTTTAGACTCCATAAACCAGTATCGGCTGTCACTGCAAATATACCAAATTTGGAGTCTGCTATATGGGAGGAAATTGCCATCCCCTATGCACAGgtgaaatagacaaatttatttttcagtatgattgattttttataaaatctctttttagttatttagattacaatttcctgaatgtgtagGTAACAGTGA
TATCGGTGGAACCAGTAAATGCACCAAACTCTACAGAGGTCATATTTGGTGTTCTTCCAGATTCAAAGAACACATCAATTTCATCATATGGCCTCATTTCGCTAAAGGAAACATTTATAACTCTACTATTAGGGAGTTATAATATTTCTCTAGCATCAGAGGCTTTAGGGTTTGCTTATTTTTTCCAAATGTTGAAATTT
CCAGGAGGAATTACAATTATTCCCAAACAGAGTTTTTTCCCTTTGCAACCAAACCAGGTGCTTTTCAATTTTACATTGCACAGCACTGTTGCACAAGTTGTTCAAAATCTAGCCCAAATGAAAAATCAATTGAAGATTGGCTTATTTGTGCGACCAAATGAGAATCTGTTCGTCCAGTTGACAAATTTGCAGGGGTCAAC
TGTTGATCCCCCAATTATAGTTGAGACATTTATTGTGCCAGTTGTGGGGAAGGATCTAACTCCTCCAAGACTAAGGCAGTTGGCTCATGAAATCACTCCTGCAAGGAATTTAGGGCTAAATCACACTCTTTTTGGCAAAGTAAAGCAAATTCAGTTGTCATCATATCTGAGATACCCTTCAACCCCCCCAGCTTATCATG
TTCTTAGTCCAGCTCCAGTTCCAGCTGCATTACCTTCACATTCTTCTTTACGTTCACCCCCATCAACCCGCCCTTTTGCTTCCATACCCCCCTCTAAAGGACAACGTGCCGTGGCTCCATCTCCCGACTACAGTGGCCATGCACCCATTCACCACCACTTTCGAGGGCGGCGTACCATGGCTCCATCTCCTCACGACAGT
GGCCTTACACCTATTCACCACCACCATGTGATGTCTCCTTTGCATCACCACTCTGCCATGCCCCCATATCATCACCGTGTAGGTGCACCCTCTTATCATCATCCCCTCATGCATTGTGATTGGCATCATGCTTCTGATCGTTCTAAATGTGGACACCAGCATGCCAAACATGCTCCCGTCTCTGGATTGAATGGAGCACC
CTCCCCCTCACCTGATAATTCTAAGTCTCATGAAAGCAGGCCTTTCAGGCACCACCATGATGTGGGAGCAGCTCCAGGACCTCTTTTTGTGACTTCTGTACCTCCTGCCATTTCTCCGCAGTATGGTCCTCCTAAAGCCCAACATCGGAATTGTCACTTGCCTTCCTTTCCACTGGCTTCACCCGCCCCTTCATCAGGTT
TTCTATCCCGTGGACCAGCTCATTCTGCCACTAAAAGTTCTTCACCTGCACCAGATGCTTTGGGCTTATCTCCTCATTTCTCATTTCTCTCACCAGAAGGCTTGACTCATTCTGCACCTCCAGAAATGAGTAAGATGCCTCATTCTGCATCTCCAGGAATGAGTAGGATGCCTCATCCAGAGCTTCCTGAAAGGGATTCT
CCAGTTCCAGCCTTCTCATATGTTTCAGCTTCGA