NA ----> NA
Intron 1 GTACTTTCTC ... CTTTCCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.63 | 111 | 16 | 151 |
| A2 | 67.86 | 63 | 11 | 133 |
| A3 | 54.36 | 110 | 19 | 131 |
| A4 | 55.13 | 70 | 13 | 86 |
| A5 | 47.52 | 53 | 12 | 48 |
| A6 | 58.61 | 613 | 73 | 868 |
| A7 | 62.76 | 473 | 70 | 797 |
| A8 | 61.38 | 519 | 72 | 825 |
| A9 | 59.07 | 456 | 46 | 658 |
| A10 | 61.9 | 296 | 40 | 481 |
>TRINITY_DN44609_c0_g1_i13 from sample A10 / Example spliced isoformCAGATGTCATCCAAGCCGGGTGATTAAGCTCGAATAATCTGTGAATTTTTTTTAATGGTAAATAGATGAAGAGAAAATCATTCTCGATACGAACAGCGCGAACGTGGCCCGTGGGTGTCTGAATCTGAGGTTGCCTCGAGTCATGGCGGGCTTATCTGGATCGGCTCAAGATCAAAGAAACACAACGTGTCTGGATCATT
AGTTTTATAAATATCCGGGAGAGAAATATAATTATGTATATATCTCTGCCGGCGCCCGGAACGCCGGCGATTTCGCCGAGAAAGAATTACAGACTGTTGCGCACTGCCGCAAAGCCCTAAACCCCACCACCAGAAACTCGATTGGAACTCCAAACACCATATTCTCTATTCTTCAACCGGAGCCCCACAATATGTAGCAA
GTTATTATTACTAGCTTACGTTCTCCTTCTTTACATTAATAGCAGAGCAGATCAGGAGAGCAGAACAGAAGTGCATTAATGGCTTCTCTTCCTTGGGGTCTCGGCCACTATTACAGTGCTGTGGACGAGCGAATTACAGAGCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCAC
GCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCTCGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTG
GCATTGCTCTGCAGTCTCTTCGTCTCAAATATTCTGTATGGGGCAATGCTTACAAGGATGATGAGAAAGAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCG
ATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATT
CTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAA
>TRINITY_DN44609_c0_g1_i2 from sample A10 / Example unspliced isoform:ATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGgtactttctcaacacttgccactagcaccatttaatattttaattttaattttcattggcagatgattatgtatcattttaacac
tccaataactgattaaacggccatggcacccttctatttcgtggcatgaaacataccacattgatggaggaattgaacccggtgggaggaatctcaccaccccctctttaccaaccagtataatcctcaacggtgattcttttttgttatgaataccaagccaatattgttttagcttccattaactcttctcctggttt
cattttggcccgtgtagcatatttctctgcagcaatgaactcagcagttcatataatcatgtacttctattatttgctttcctcagTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTA
AAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAA
CGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAG
GAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGC
CCACTGGCAGATTCTCTTTGTAAGGAACT
Intron 2 GTGCGTCCTA ... TCGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.57 | 300 | 2 | 73 |
| A2 | 18.43 | 177 | 4 | 40 |
| A3 | 23.08 | 260 | 6 | 78 |
| A4 | 23.08 | 190 | 3 | 57 |
| A5 | 22.41 | 135 | 0 | 39 |
| A6 | 20.08 | 1576 | 6 | 396 |
| A7 | 17.38 | 1322 | 2 | 278 |
| A8 | 21.46 | 1193 | 4 | 326 |
| A9 | 18.8 | 1227 | 0 | 284 |
| A10 | 16.71 | 967 | 0 | 194 |
>TRINITY_DN41396_c0_g1_i6 from sample A6 / Example spliced isoformGATTAAGCTCGAATAATCTGTGAATTTTTTTTAATGGTAAATAGATGAAGAGAAAATCATTCTCGATACGAACAGCGCGAACGTGGCCCGTGGGTGTCTGAATCTGAGGTTGCCTCGAGTCATGGCGGGCTTATCTGGATCGGCTCAAGATCAAAGAAACACAACGTGTCTGGATCATTAGTTTTATAAATATCCGGGAG
AGAAATATAATTATGTATATACCTCTGCCGGCGCCCGGAACGCCGGCGATTTCGCCGAGAAAGAATTACAGACTGTTGCGCACTGCCGCAAAGCCCTAAACCCCACCACCAGAAACTCGATTGGAACTCCAAACACCATATTCTCTATTCTTCAACCGGAGCCCCACAATATGTAGCAAGTTATTATTACTAGCTTACGT
TCTCCTTCTTTACATTAATAGCAGAGCAGATCAGGAGAGCAGAACAGAAGTGCATTAATGGCTTCTCTTCCTTGGGGTCTCGGCCACTATTACAGTGCTGTGGACGAGCGAATTACAGAGCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGA
CAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCTCGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTGGCATTGCTCTGCAGTCTCTTC
GTCTCAAATATTCTGTATGGGGCAATGCTTACAAGGATGATGAGAAAGAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGGTGAGATCATTATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGT
GGATCATTGCCCATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAG
GCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGT
CGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTC
GACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTT
TTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTTTTGTAAGATACTATCTTTCCATAACCACTTGTCAGTTCTCGGAA
>TRINITY_DN41396_c0_g1_i7 from sample A6 / Example unspliced isoform:TGCTTGTGTTGTGCTTCTATCCATTTTTCTAGGATCTTATTAGTCATGATTTTAACATCGTTACAAATTATTTTGTCCATTCTATCCCTTGCTCACTAATGCGTTTTATCCGTTAGATGTTCTTTGCTGCTAATTTTGGGTTTTGGATTTTCAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGC
TTATGGACACGGTGAGATCATTgtgcgtcctagatctttctaaataggattgcagttctttgtcctagaatcagcttgaatattcaagttctccttttttttctttaggactttgtagacaattttaactttaatacaatatttaaaacattcccagcatctcaaaactttgtatgaagtggttgagttgttttcgtttc
cagATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAA
AGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTAAGTTGTGAAATGTAAACTCTTTTTTATTACTTTTCCAAATAGCTGACGATAATCTTATAGTACATATGGTAATCAGTTTACTATAAACAGGGTCTACTGGGTTTGCACCTTTTCTAACAAAAAATTCTATAATTTTTTAATTTATTTCCTGTTTGATCTCA
GGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGA
TAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCT
CCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTA
GAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTTTTGTAAGATACTATCTTTCCATAACCACTTGTCAGTTCTCGGAA
Intron 3 GTACTTTCTC ... GCCGGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.7 | 279.8 | 42.9 | 88 |
| A2 | 26.38 | 226 | 25.5 | 81.6 |
| A3 | 20 | 268 | 45.9 | 67.8 |
| A4 | 21.98 | 203.6 | 31.7 | 57.8 |
| A5 | 17.86 | 109.2 | 24.1 | 24 |
| A6 | 22.4 | 1573 | 210.7 | 458.9 |
| A7 | 26.1 | 1274.4 | 179.7 | 454.8 |
| A8 | 24.13 | 1394 | 188.6 | 449.2 |
| A9 | 21.17 | 1196.8 | 154.5 | 325.5 |
| A10 | 24.05 | 911.6 | 115.6 | 292.1 |
>TRINITY_DN129179_c3_g1_i8 from sample A1 / Example spliced isoformCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTTACAGTGCTGTGGACGAGCGAATTACAGAGCGAGTG
CTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCT
CGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTGGCATTGCTCTGCAGTCTCTTCGTCTCAAATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGGTGAGATCATTATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTA
TATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACA
AATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAACACAAGGTCAAGATAA
AATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCA
ATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAG
CTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTGTAAGATACCATCTTTCCATAACCACTTGTCAGTTCTCGGAGACAGCTTCGTAAGTTAATTCAATGCAAATGCATACTTGATGACAAACAAAACA
AAATGATACCATGCAAGAGCTGGGGATAAGTCCAAA
>TRINITY_DN129179_c3_g1_i2 from sample A1 / Example unspliced isoform:CCATCATGCACCAGGAGGAGATGgtactttctcaacacttgccactagcaccatttaatatttttcttttaattttcattggcagatgattatgtatcattttaacactccaataactgattaaacggccatggcacccttctatttcgtggcatgaaacataccacattgatggaggaattgaacccggtgggaggaat
ctcaccaccccctctttaccaaccagtataatcctcaacggtgattcttttttgttatgaataccaagccaatattgttttagcttccattaactcttctcctggtttcattttggcccgtgtagCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAA
GGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTAAGTTGTGAAATGTAAACTCTTTTTTATTACTTTTCCAAATAGCTGACGATAATCTTATAGGACATATGGTAATCAGTTTACTATAAACAGGGTCTACTGGGTTTGCACCTTTTCTAACAAAAAATTCTATAATTTTTTAATTTATTTCCTGTTT
GATCTCAGGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATT
GGAGTGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAA
TTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTC
AACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTGTAAGATACCATCTTTCCATAACCACTTGTCAGTTCTCGGAGACAGCTTCGTAAGTTAATTCAATGCAAATGCATACTTGATGAC
AAACAAAACAAAATGATACCATGCAAGAGCTGGGGATAAGTCCAAA
Intron 4 GTATAATCCT ... GCCCGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.19 | 89 | 7 | 74.7 |
| A2 | 45.56 | 83 | 5 | 72.6 |
| A3 | 42.93 | 67 | 3 | 56.7 |
| A4 | 41.45 | 66 | 9 | 49.9 |
| A5 | 38.48 | 29 | 0 | 20.6 |
| A6 | 43 | 475 | 20 | 391.1 |
| A7 | 44.5 | 457 | 45 | 394.1 |
| A8 | 42.32 | 472 | 31 | 381.9 |
| A9 | 40.74 | 356 | 14 | 273.1 |
| A10 | 42.84 | 307 | 18 | 251.1 |
>TRINITY_DN44248_c0_g2_i10 from sample A7 / Example spliced isoformCTGTGAAATTTTTTTAATGGTAAATAGATGAAGAGAAAATCATTCTCGATACGAACAGCGCGAACGTGGCCCGTGGGTGTCTGAATCTGAGGTTGCCTCGAGTCATGGCGGGCTTATCTGGATCGGCTCAAGATCAAAGAAACACAACGTGTCTGGATCATTAGTTTTATAAATATCCGGGAGAGAAATATAATTATGTA
TATATCTCTGCCGGCGCCCGGAACGCCGGCGATTTCGCCGAGAAAGAATTACAGACTGTTGCGCACTGCCGCAAAGCCCTAAACCCCACCACCAGAAACTCGATTGGAACTCCAAACACCATATTCTCTATTCTTCAACCGGAGCCCCACAATATGTAGTAAGTTATTATTACTAGCTTACGTTCTCCTTCTTTACATTA
ATAGCAGAGCAGATCAGGAGAGCAGAACAGAAGTGCATTAATGGCTTCTCTTCCTTGGGGTCTCGGCCACTATTACAGTGCTGTGGACGAGCGAATTACAGAGCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGA
TCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCTCGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTGGCATTGCTCTGCAGTCTCTTCGTCTCAAATATTCTGTA
TGGGGCAATGCTTACAAGGATGATGAGAAAGAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGGTGAGATCATTATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCAT
GCACCAGGAGGAGATGGTACTTTCTCAACACTTGCCACTAGCACCATTTAATATTTTAATTTTAATTTTCATTGGCAGATGATTATGTATCATTTTAACACTCCAATAACTGATTAAACGGCCATGGCACCCTTCTATTTCGTGGCATGAAACATACCACATTGTTGGAGGAATTGAACCCGGTGGGAGGAATCTCACCA
CCCCCTCTTTACCAACCACATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATT
AAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAACACAAGGTCAAGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAG
TCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCT
CGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTT
TTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTGTAAGATACCATCTTTCCATAACCACTTGTCAGTTCTCG
>TRINITY_DN44248_c0_g2_i1 from sample A7 / Example unspliced isoform:GCCAAAATGAAACCAGGAGAAGAGTTAATGGAAGCTAAAACAATATTGGCTTGGTATTCATAACAAAAAAGAATCACCGTTGAGGATTATACTGGTTGGTAAAGAGGAGATGGTACTTTCTCAACACTTGCCACTAGCACCATTTAATATTTTAATTTTAATTTTCATTGGCAGATGATTATGTATCATTTTAACACTCC
AATAACTGATTAAACGGCCATGGCACCCTTCTATTTCGTGGCATGAAACATACCACATTGTTGGAGGAATTGAACCCGGTGGGAGGAATCTCACCACCCCCTCTTTACCAACCAgtataatcctcaacggtgattcttttttgttttgaatacaaagccaatattgttttagcttccattaactcttctcctggtttcat
tttggccggtgtagCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTA
Intron 5 GTAAGTTGTG ... TTGATCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.93 | 242.1 | 69.4 | 75.9 |
| A2 | 21.14 | 229 | 70.9 | 61.1 |
| A3 | 19.56 | 226.8 | 60.7 | 55 |
| A4 | 24.35 | 143.1 | 46.9 | 45.9 |
| A5 | 26.4 | 75.5 | 18.7 | 27 |
| A6 | 24.39 | 1612.6 | 369 | 519 |
| A7 | 23.08 | 1369 | 340.5 | 409.5 |
| A8 | 23.39 | 1519.3 | 324.3 | 462.7 |
| A9 | 23.19 | 1261.2 | 260.8 | 379.9 |
| A10 | 23.39 | 870.3 | 205.8 | 265.1 |
>TRINITY_DN129179_c3_g1_i8 from sample A1 / Example spliced isoformCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTTACAGTGCTGTGGACGAGCGAATTACAGAGCGAGTG
CTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCT
CGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTGGCATTGCTCTGCAGTCTCTTCGTCTCAAATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGGTGAGATCATTATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTA
TATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACA
AATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAACACAAGGTCAAGATAA
AATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCA
ATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAG
CTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTGTAAGATACCATCTTTCCATAACCACTTGTCAGTTCTCGGAGACAGCTTCGTAAGTTAATTCAATGCAAATGCATACTTGATGACAAACAAAACA
AAATGATACCATGCAAGAGCTGGGGATAAGTCCAAA
>TRINITY_DN129179_c3_g1_i2 from sample A1 / Example unspliced isoform:CCATCATGCACCAGGAGGAGATGGTACTTTCTCAACACTTGCCACTAGCACCATTTAATATTTTTCTTTTAATTTTCATTGGCAGATGATTATGTATCATTTTAACACTCCAATAACTGATTAAACGGCCATGGCACCCTTCTATTTCGTGGCATGAAACATACCACATTGATGGAGGAATTGAACCCGGTGGGAGGAAT
CTCACCACCCCCTCTTTACCAACCAGTATAATCCTCAACGGTGATTCTTTTTTGTTATGAATACCAAGCCAATATTGTTTTAGCTTCCATTAACTCTTCTCCTGGTTTCATTTTGGCCCGTGTAGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAA
GGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAgtaagttgtgaaatgtaaactcttttttattacttttccaaatagctgacgataatcttataggacatatggtaatcagtttactataaacagggtctactgggtttgcaccttttctaacaaaaaattctataattttttaatttatttcctgttt
gatctcagGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATT
GGAGTGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAA
TTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTC
AACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTGTAAGATACCATCTTTCCATAACCACTTGTCAGTTCTCGGAGACAGCTTCGTAAGTTAATTCAATGCAAATGCATACTTGATGAC
AAACAAAACAAAATGATACCATGCAAGAGCTGGGGATAAGTCCAAA
Intron 6 GCAAGTTATT ... ACTATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.78 | 42 | 53 | 217 |
| A2 | 82.54 | 62 | 67 | 293 |
| A3 | 81 | 72 | 56 | 307 |
| A4 | 81.43 | 57 | 31 | 250 |
| A5 | 80.13 | 31 | 36 | 125 |
| A6 | 77.2 | 321.3 | 286 | 1088 |
| A7 | 77.19 | 359 | 258 | 1215 |
| A8 | 75.89 | 209.7 | 173 | 660 |
| A9 | 76.78 | 348 | 263 | 1151 |
| A10 | 76.56 | 288.7 | 251 | 943 |
>TRINITY_DN108003_c0_g1_i6 from sample A2 / Example spliced isoformCTGAATCTGAGGTTGCCTCGAGTCATGGCGGGCTTATCTGGATCGGCTCAAGATCAAAGAAACACAACGTGTCTGGATCATTAGTTTTATAAATATCCGGGAGAGAAATATAATTATGTATATACCTCTGCCGGCGCCCGGAACGCCGGCGATTTCGCCGAGAAAGAATTACAGACTGTTGCGCACTGCCGCAAAGCCCT
AAACCCCACCACCAGAAACTCGATTGGAACTCCAAACACCATATTCTCTATTCTTCAACCGGAGCCCCACAATATGTATGCTGTGGACGAGCGAATTACAGAGCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGA
TCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCTCGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTGGCATTGCTCTGCAGTCTCTTCGTCTCAAATATTCTGTA
TGGGGCAATGCTTACAAGGATGATGAGAAAGAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGG
AGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTC
CATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAACACAAGGTCAAGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTG
AAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTG
AGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTTTCCTTAG
TACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTTTTGTAAGATACTATCTTTCCATAACCACTTGTCAGTTCTCGGAGACAGCTTCGTAAGTTAATTCAATGCAAATGCATACTTGATGACAAACAAAACAAAATGATACCATGCAAGAGCTGGC
>TRINITY_DN108003_c0_g1_i7 from sample A2 / Example unspliced isoform:CTGAATCTGAGGTTGCCTCGAGTCATGGCGGGCTTATCTGGATCGGCTCAAGATCAAAGAAACACAACGTGTCTGGATCATTAGTTTTATAAATATCCGGGAGAGAAATATAATTATGTATATACCTCTGCCGGCGCCCGGAACGCCGGCGATTTCGCCGAGAAAGAATTACAGACTGTTGCGCACTGCCGCAAAGCCCT
AAACCCCACCACCAGAAACTCGATTGGAACTCCAAACACCATATTCTCTATTCTTCAACCGGAGCCCCACAATATGTAgcaagttattattactagcttacgttctccttctttacattaatagcagagcagatcaggagagcagaacagaagtgcattaatggcttctcttccttggggtctcggccactattacagTG
CTGTGGACGAGCGAATTACAGAGCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAG
AACAGAGAGCCTTTGCCCCTGCGGGTGCTCGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTGGCATTGCTCTGCAGTCTCTTCGTCTCAAATATTCTGTATGGGGCAATGCTTACAAGGATGATGAGAAAGAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCT
TATGGACACGGTGAGATCATTATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTC
CTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACT
TCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAACACAAGGTCAAGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGA
TCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCA
CCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTTTTGTAAGATACTATCTTTCC
ATAACCACTTGTCAGTTCTCGGAGACAGCTTCGTAAGTTAATTCAATGCAAATGCATACTTGATGACAAACAAAACAAAATGATACCATGCAAGAGCTGGC
Intron 7 GTGAGATCAT ... TCGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.2 | 328 | 0 | 73 |
| A2 | 16.88 | 197 | 4 | 40 |
| A3 | 21.55 | 284 | 6 | 78 |
| A4 | 21.03 | 214 | 3 | 57 |
| A5 | 21.43 | 143 | 0 | 39 |
| A6 | 18.95 | 1694 | 7 | 396 |
| A7 | 16.03 | 1456 | 2 | 278 |
| A8 | 20.32 | 1278 | 4 | 326 |
| A9 | 17.55 | 1334 | 0 | 284 |
| A10 | 15.66 | 1045 | 0 | 194 |
>TRINITY_DN41396_c0_g1_i3 from sample A6 / Example spliced isoformGATTAAGCTCGAATAATCTGTGAATTTTTTTTAATGGTAAATAGATGAAGAGAAAATCATTCTCGATACGAACAGCGCGAACGTGGCCCGTGGGTGTCTGAATCTGAGGTTGCCTCGAGTCATGGCGGGCTTATCTGGATCGGCTCAAGATCAAAGAAACACAACGTGTCTGGATCATTAGTTTTATAAATATCCGGGAG
AGAAATATAATTATGTATATACCTCTGCCGGCGCCCGGAACGCCGGCGATTTCGCCGAGAAAGAATTACAGACTGTTGCGCACTGCCGCAAAGCCCTAAACCCCACCACCAGAAACTCGATTGGAACTCCAAACACCATATTCTCTATTCTTCAACCGGAGCCCCACAATATGTAGCAAGTTATTATTACTAGCTTACGT
TCTCCTTCTTTACATTAATAGCAGAGCAGATCAGGAGAGCAGAACAGAAGTGCATTAATGGCTTCTCTTCCTTGGGGTCTCGGCCACTATTACAGTGCTGTGGACGAGCGAATTACAGAGCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTGCGCCTCCCACGCGCGGGTGGCCTGCAGTTGA
CAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCTCGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTACATGTGCTCTGGCATTGCTCTGCAGTCTCTTC
GTCTCAAATATTCTGTATGGGGCAATGCTTACAAGGATGATGAGAAAGAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCC
CATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTG
TATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAACACAAGGTCAAGATAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTT
AGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGA
TGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAAT
GTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTTTTGTAAGATACTATCTTTCCATAACCACTTGTCAGTTCTCGGAA
>TRINITY_DN41396_c0_g1_i7 from sample A6 / Example unspliced isoform:TGCTTGTGTTGTGCTTCTATCCATTTTTCTAGGATCTTATTAGTCATGATTTTAACATCGTTACAAATTATTTTGTCCATTCTATCCCTTGCTCACTAATGCGTTTTATCCGTTAGATGTTCTTTGCTGCTAATTTTGGGTTTTGGATTTTCAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGC
TTATGGACACGgtgagatcattgtgcgtcctagatctttctaaataggattgcagttctttgtcctagaatcagcttgaatattcaagttctccttttttttctttaggactttgtagacaattttaactttaatacaatatttaaaacattcccagcatctcaaaactttgtatgaagtggttgagttgttttcgtttc
cagATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGTTTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAA
AGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTAAGTTGTGAAATGTAAACTCTTTTTTATTACTTTTCCAAATAGCTGACGATAATCTTATAGTACATATGGTAATCAGTTTACTATAAACAGGGTCTACTGGGTTTGCACCTTTTCTAACAAAAAATTCTATAATTTTTTAATTTATTTCCTGTTTGATCTCA
GGTATCTCACACGAATACAAATGCTACAGTTTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGA
TAAAATCTTCTTCTCCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCT
CCAATGAATGGTTAAACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTA
GAGCTCATATGCATTTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTTTTGTAAGATACTATCTTTCCATAACCACTTGTCAGTTCTCGGAA
Intron 8 GTATCTTCTT ... TCTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.63 | 320.2 | 0 | 2 |
| A2 | 3.09 | 252.3 | 0 | 8 |
| A3 | 0.34 | 299.7 | 0 | 1 |
| A4 | 2.55 | 191.7 | 0 | 5 |
| A5 | 1.03 | 96 | 0 | 1 |
| A6 | 1.17 | 2200.7 | 0 | 26 |
| A7 | 0.4 | 1749.5 | 0 | 7 |
| A8 | 0.69 | 2171.7 | 2 | 15 |
| A9 | 0.73 | 1776.3 | 0 | 13 |
| A10 | 0.91 | 1098.8 | 2 | 10 |
>TRINITY_DN40377_c0_g1_i5 from sample A8 / Example spliced isoformCACCGAGCCGCAGATGTCATCCAAGCCGGGTGATTAAGCTCGAATAATCTGTGAATTTTTTTTAATGGTAAATAGATGAAGAGAAAATCATTCTCGATACGAACAGCGCGAACGTGGCCCGTGGGTGTCTGAATCTGAGGTTGCCTCGAGTCATGGCGGGCTTATCTGGATCGGCTCAAGATCAAAGAAACACAACGTGT
CTGGATCATTAGTTTTATAAATATCCGGGAGAGAAATATAATTATGTATATATCTCTGCCGGCGCCCGGAACGCCGGCGATTTCGCCGAGAAAGAATTACAGACTGTTGCGCACTGCCGCAAAGCCCTAAACCCCACCACCAGAAACTCGATTCGAACTCCAAACACCATATTCTCTATTCTTCAACCGGAGCCCCACAA
TATGTAGCAAGTTATTATTACTAGCTTACGTTCTCCTTCTTTACATTAATAGCAGAGCAGATCAGGAGAGCAGAACAGAAGTGCATTAATGGCTTCTCTTCCTTGGGGTCTCGGCCACTATTACAGTGCTGTGGACGAGCGAATTACAGAGCGAGTGCTGCGGATCATAAATGCGGCCACCGGGGTGGAACTGGCGAGTG
CGCCTCCCACGCGCGGGTGGCCTGCAGTTGACAGTCCGACACCCATGATCGTTGCGCTGGCGGCGTATTTGTGCGCAGTGTGCCTGGGATCGCTGTGGATTCAGGTGGCGGCGCTGAAGCCCAACAAGAACAGAGAGCCTTTGCCCCTGCGGGTGCTCGTCGTGGCGCACAACATTTTCTGCCTGCTGCTTAGTGTTTAC
ATGTGCTCTGGCATTGCTCTGCAGTCTCTTCGTCTCAAATATTCTGTATGGGGCAATGCTTACAAGGATGATGAGAAAGAGATGGCGTACTTCATCTACCTTTTCTACATTTCCAAAATTTTTGAGCTTATGGACACGATAATAATGGTCTTGAAGCGAAATGTTCATCAAATCACTGTTCTTCATGTATATCACCATGT
TTCTATAGCGATTATTTGGTGGATCATTGCCCATCATGCACCAGGAGGAGATGCATATTTCTCTGCAGCAATGAACTCAGCAGTTCATATAATCATGTACTTCTATTATTTGCTTTCCTCAGTTCTAAGGGGCAAAGAGAAACTACGACGAAAATACCTCTTTTGGGGAAAGTATCTCACACGAATACAAATGCTACAGT
TTGGTCTGAATATGGTTCAGGCTTACTATTGTATTAAAACGCATGCTCCATATCCAAGATTTCTGTGCAAGACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATAACACAAGGTCAAGATAAAATCTTCTTCT
CCCATGCCCCTATGAAAGATCAACTTTAGTTAGAGTCGTTTTTTTCTGAAAACGCTAGGTTGATTGATCATGGAGTGTAATCTTCTTCCAAGAGTCCAAGTTTTTGTATGAGCAAGATCTAGGTGAGTTGTGTGGGAGAAGTGTAATAGGACTATACTATGGTTTTATTGTATTTTCAATTGCTCTCCAATGAATGGTTA
AACGGAGTCCTACCTCCTGATAGGGGGTAGATGCTCGACATTAAGCTGAGAGGAAGCATTTTTTCAAAAGTCTCTTTATATATTTCTTTTTGCTTTGTGTTGTGCTCATTTAAGGCACCAGCCCGAAGCTTGCCTGTTGTGTATTACAGTAGTCTGAGATTAGGAATTTCTAGCCTTTCAACTCTAGAGCTCATATGCAT
TTGTGCAGACACAATTGTTATTTTTGTTAATGTTTTTTTTCCTTAGTACAGCCCACTGGCAGATTCTCTTTGTAAGGAACTAAACTTGTTTTTTTTTGTAAGATACTATCTTTCCATAA
>TRINITY_DN40377_c0_g1_i2 from sample A8 / Example unspliced isoform:GATTTCTGTGCAAGgtatcttcttttttgtcatggaacactgtttctgcagatttgacatagatggactaaccagctaacggtgtttcttctttcacagACACTATTCTACTACATGATCTCGTTGCTGCTGTTGTTCTCCAACTTCTATGTGCACAAGTACAACTCATTTCCTGCAAAGCAAAAGAAATTGGAGTGATA
A