sp|F4JKK0|SUD1_ARATH ----> Probable E3 ubiquitin ligase SUD1
Intron 1 GTTTGTCCCT ... CTGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.69 | 96 | 0 | 8 |
| A2 | 15.56 | 76 | 0 | 14 |
| A3 | 12.7 | 110 | 0 | 16 |
| A4 | 15.63 | 81 | 0 | 15 |
| A5 | 18.6 | 35 | 0 | 8 |
| A6 | 9.64 | 300 | 1 | 32 |
| A7 | 10.72 | 383 | 0 | 46 |
| A8 | 11.54 | 322 | 0 | 42 |
| A9 | 12.85 | 251 | 2 | 37 |
| A10 | 11.43 | 248 | 0 | 32 |
>TRINITY_DN40156_c0_g1_i1 from sample A9 / Example spliced isoformCGGGAGACCGGCTCAACCAGTTTCTACAGGGAGACCAGTTCCCGTCAGGGCATGGGTAAGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGTTCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCT
GTCTTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTATTGGACGCTTGACGTGCAGGAGTGAAAGGTTATCTTTAGGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTA
GCGAGCATGGCATTGGCGATACAGATACGGCCCCTCTTCTGCAACCACCATTAATTGCATTGGTCGAGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAA
TTTGTTCACCGGTCATGCCTTGATCACTGGCGTTCTGTGAAGGAAGGTTTTGCATTTTCACATTGCACTACCTGTAAAGCACAATTTCATCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAATGATTGCTGT
CATGGGTGGTATTGCATATTTGATGGACACAAATGGGCAATTCAGAAATTCATTCAGTGATGGATGGGACCGACTGTTATCAAAGCATCCGATACCATTTTACTATTGTTTTGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCTCAGTCAACAACAACGATCCATGCATGGCGG
GTTGTCGGAATTGTTGTTATGGATGGGGCATTTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTTACAAAG
GAATATATTGTTGAAGACCTGCATGGACACTATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTAAAAATGAATATAGCATGTATACTTCTCAATATGTTCTCTGATGACATTTTTCTTATAATTGACACATCTTCAAATTATATAGCTCTTTGTGCCTGTCA
AGCCTGATTTCTCTGATAGGCCTGAGTATGAATTGCTAAATATTTGGAAGTTCATTTCAATAATTACTTTGCTGCTATAACATGATGGTTCTCCATCCTTCCCGTGTGTATGTAGATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCTAACATGGGCAACCAAGGCATGTTGCTTCCAGTCCA
TGGCCACCTTGGATGCTTATGACAATTCAGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTCGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCTGAACAATTCACAATAATTAATTACAAATTC
CAAATTAAATGTGAAAGGGTTTCCCAATTTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTAGTAGTAGAAATATTGTCATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTATAGATATTTGAAT
>TRINITY_DN40156_c0_g1_i6 from sample A9 / Example unspliced isoform:TACCATTTTACTATTGTTTTGgtttgtcccttgtatctcaggtctcagttttgtctattgggttaaccttgagtggctgagaggaaaagttgtttcctccccctttcaggttcaaatcccactctgtgatacgtttgctcttcatgagctgattgttcttgagatgttgacctggccttcagccctgaagaatccaggtt
accctggttttcctgggagatgcattcccaaataaaaaaggaaaaaaaatcaatctgttgtctcagttttatacataattcctttacttgtatttaattgactaatgtctggtttatttcaaatcatttgacagtggctttgtgaagactgaacatagtaagcacacagtttgaactttgaataacccaaccaattctgc
atgcagGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCTCAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCATTTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTT
GGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACTATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTAAAAAT
GAATATAGCATGTATACTTCTCAATATGTTCTCTGATGACATTTTTCTTATAATTGACACATCTTCAAATTATATAGCTCTTTGTGCCTGTCAAGCCTGATTTCTCTGATAGGCCTGAGTATGAATTGCTAAATATTTGGAAGTTCATTTCAATAATTACTTTGCTGCTATAACATGATGGTTCTCCATCCTTCCCGTGT
GTATGTAGATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCTAACATGGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTCAGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACA
CTTTTCTTGAAGAGCTGTTAAATCGTCGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCTGAACAATTCACAATAATTAATTACAAATTCCAAATTAAATGTGAAAGGGTTTCCCAATTTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTAGTAGTAGAAATATTGTCATTTACTCTGTGTTTTC
TCAATGCATTAAGATTTCATGGTTTACTATAGATATTTGAAT
Intron 2 GTATTGGACG ... TTATCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.5 | 88 | 92 | 123 |
| A2 | 65.16 | 73.5 | 107 | 147 |
| A3 | 59.42 | 82 | 118 | 115 |
| A4 | 72.58 | 47 | 105 | 131 |
| A5 | 63.31 | 36 | 54 | 62 |
| A6 | 67.32 | 121 | 184 | 269 |
| A7 | 64.08 | 214 | 308 | 406 |
| A8 | 65.2 | 100 | 153 | 194 |
| A9 | 64.32 | 192.5 | 282 | 362 |
| A10 | 61.4 | 209.7 | 267 | 347 |
>TRINITY_DN112159_c0_g1_i6 from sample A2 / Example spliced isoformTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGTTCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCTGTCTTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTTATTGTGATCATTTTGAAGGATTAG
ACCAATTCTACGAGAAATCCGTCAG
>TRINITY_DN112159_c0_g1_i8 from sample A2 / Example unspliced isoform:TCAGACTTATTCTTCAAACTTCGAAATAACACGACATGTTCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCTGTCTTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGgtattggacgcttgacgtgcaggagtg
aaaggttatctttagGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTAGCGAGCATGGCATTGGCGATACAGATACGGCCCCTCTTCTGCAACCACCATTAATTGCATTGGTCG
AGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAATTTGTTCACCGGTCATGCCTTGATCACTGGCGTTCTGTGAAGGAAGGTTTTGCATTTTCACATTGC
ACTACCTGTAAAGCACAATTTCATCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAGTAAGTATGAGATCTTGATGACTGGCTGATAACTTGCTCCATGAGCCATGATTTCAAAAATTTATGCATGTTAGGTT
TGTTTGTATAGACAAAAACCAAAAAGAAATTAGAAGTCGATTTCTAATTACAGAACTGTATTAGTTTTTCAAACATCT
Intron 3 GTATACTTCT ... GTGTATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.73 | 24 | 79 | 37 |
| A2 | 58.21 | 28 | 34 | 44 |
| A3 | 56.12 | 45.8 | 59.3 | 58 |
| A4 | 64.01 | 27.3 | 44 | 53 |
| A5 | 61.73 | 9.9 | 17 | 15 |
| A6 | 63.36 | 159.5 | 281 | 270.7 |
| A7 | 62.22 | 175.9 | 297 | 282.3 |
| A8 | 60.1 | 226.9 | 304.5 | 379 |
| A9 | 60.41 | 187.1 | 284.3 | 286.7 |
| A10 | 61.9 | 113.4 | 206.5 | 162 |
>TRINITY_DN124152_c0_g1_i2 from sample A1 / Example spliced isoformCGGGAGACCGGCTCAACCAGTTTCTACAGGGAGACCAGTTCCCGTCAGGGCATGGGTAAGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGATCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCT
GTATTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTTATCTTTAGGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTAGCGAGCATGGCATTGGCGATACAGATACGGC
CCCTCTTCTGCAACCACCATTAATTGCATTGGTCGAGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAATTTGTTCACCGGTCATGCCTTGATCACTGGC
GTTCTGTGAAGGAAGGTTTTGCATTTTCACATTGCACTACCTGTAAAGCACAATTTCATCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAATGATTGCTGTCATGGGTGGTATTGCATATTTGATGGACACA
AATGGGCAATTCAGAAATTCATTCAGTGATGGATGGGACCGACTGTTATCAAAGCATCCGATACCATTTTACTATTGTTTTGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCTCAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCAT
TTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACT
ATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTCAAAATGAATATAGCATATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCCAACATGGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTC
AGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTTGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCTGAACAATTCACAATAATTAATTACAAATTCCAAATTAAATGTGAAAGGGTTTCCCAAT
TTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTAGTAGTAGAAATATTGTCATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTACAGATATTTGAATACCTGTTAGAATACTTGACTCTCGAAAGGAAGTATCAACGTTTTTATATTTATACACTGACGTATTATATTAGTGTGTT
TAAAATTTAAATATCAACCACTTTTGTCTGCTCTATTCTGTGTTCTTTGCATTGAAAATGCACTACAGAGGACATTTTATCTGTTTATAATATGTTTCTCATCCTTGGACTTGCATTTCTG
>TRINITY_DN124152_c0_g1_i1 from sample A1 / Example unspliced isoform:CGGGAGACCGGCTCAACCAGTTTCTACAGGGAGACCAGTTCCCGTCAGGGCATGGGTAAGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGATCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCT
GTATTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTTATCTTTAGGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTAGCGAGCATGGCATTGGCGATACAGATACGGC
CCCTCTTCTGCAACCACCATTAATTGCATTGGTCGAGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAATTTGTTCACCGGTCATGCCTTGATCACTGGC
GTTCTGTGAAGGAAGGTTTTGCATTTTCACATTGCACTACCTGTAAAGCACAATTTCATCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAATGATTGCTGTCATGGGTGGTATTGCATATTTGATGGACACA
AATGGGCAATTCAGAAATTCATTCAGTGATGGATGGGACCGACTGTTATCAAAGCATCCGATACCATTTTACTATTGTTTTGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCTCAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCAT
TTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACT
ATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTAAAAATGAATATAGCATgtatacttctcaatatgttctctaatgacatttttcttataattgacacatcttcaaattatatagctctttgtgcctgtcaagcctgatttctctgataggcctgagtatga
attgctaaatatttggaagttcatttcaataattactttgctgctataacatgatggttctccatccttcccgtgtgtatgtagATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCCAACATGGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTCAGA
TATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTTGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCTGAACAATTCACAATAATTAATTACAAATTCCAAATTAAATGTGAAAGGGTTTCCCAATTTC
GATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTAGTAGTAGAAATATTGTCATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTACAGATATTTGAATACCTGTTAGAATACTTGACTCTCGAAAGGAAGTATCAACGTTTTTATATTTATACACTGACGTATTATATTAGTGTGTTTAA
AATTTAAATATCAACCACTTTTGTCTGCTCTATTCTGTGTTCTTTGCATTGAAAATGCACTACAGAGGACATTTTATCTGTTTATAATATGTTTCTCATCCTTGGACTTGCATTTCTG
Intron 4 GTATTGGACG ... GGAGTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.43 | 113.1 | 92 | 113 |
| A2 | 52.01 | 109.3 | 105.4 | 133.2 |
| A3 | 53.12 | 101.1 | 117.6 | 112.4 |
| A4 | 59.86 | 75.3 | 103.1 | 122.5 |
| A5 | 52.75 | 49.5 | 53.7 | 57.2 |
| A6 | 53.85 | 177.2 | 182.5 | 234.3 |
| A7 | 52.48 | 301.8 | 303.9 | 367.2 |
| A8 | 53.01 | 145.6 | 151 | 179.7 |
| A9 | 52.6 | 273 | 279.5 | 329.9 |
| A10 | 51.55 | 274.9 | 266.4 | 322.2 |
>TRINITY_DN124152_c0_g1_i2 from sample A1 / Example spliced isoformCGGGAGACCGGCTCAACCAGTTTCTACAGGGAGACCAGTTCCCGTCAGGGCATGGGTAAGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGATCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCT
GTATTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTTATCTTTAGGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTAGCGAGCATGGCATTGGCGATACAGATACGGC
CCCTCTTCTGCAACCACCATTAATTGCATTGGTCGAGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAATTTGTTCACCGGTCATGCCTTGATCACTGGC
GTTCTGTGAAGGAAGGTTTTGCATTTTCACATTGCACTACCTGTAAAGCACAATTTCATCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAATGATTGCTGTCATGGGTGGTATTGCATATTTGATGGACACA
AATGGGCAATTCAGAAATTCATTCAGTGATGGATGGGACCGACTGTTATCAAAGCATCCGATACCATTTTACTATTGTTTTGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCTCAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCAT
TTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACT
ATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTCAAAATGAATATAGCATATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCCAACATGGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTC
AGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTTGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCTGAACAATTCACAATAATTAATTACAAATTCCAAATTAAATGTGAAAGGGTTTCCCAAT
TTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTAGTAGTAGAAATATTGTCATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTACAGATATTTGAATACCTGTTAGAATACTTGACTCTCGAAAGGAAGTATCAACGTTTTTATATTTATACACTGACGTATTATATTAGTGTGTT
TAAAATTTAAATATCAACCACTTTTGTCTGCTCTATTCTGTGTTCTTTGCATTGAAAATGCACTACAGAGGACATTTTATCTGTTTATAATATGTTTCTCATCCTTGGACTTGCATTTCTG
>TRINITY_DN124152_c0_g1_i15 from sample A1 / Example unspliced isoform:CGGGAGACCGGCTCAACCAGTTTCTACAGGGAGACCAGTTCCCGTCAGGGCATGGGTAAGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGATCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCT
GTATTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGgtattggacgcttgacgtgcaggagtgaaagGTTATCTTTAGGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTA
GCGAGCATGGCATTGGCGATACAGATACGGCCCCTCTTCTGCAACCACCATTAATTGCATTGGTCGAGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGGTATATTTATTCATCTTATGGTATTTTTGCATAGTGAGATTGGG
AATGCATTGGCAATTATAAATTTAGTTGATTGACTCGTATTTTTGATTCTCATGCCGGTGCTTTCTGTCGCATTTGAGTTGATTAGAGGGCCTTGGTCCAGTCAAGCTTTATCTATGTCATGGTTTGCTGTATAAGGCTATTGGGAATTGATTGATAATTGAATATATTGACTCCTAATTCTGATCCTCATTTAATAGCA
AAGTATATATGCGATTGCTATTACAAAGTGAAAAGGGGGTGTACAATTTCACACTGTCACAGTTGTTTTGGGAGTAGTCCCCTACATCGACATCCTAAGTGGAGCTCCTTAGGTGATCTAGGCCCATGTTGGCCATGTGTAGCTAGAGTTTCTTGGGCTGCTCTTTGTTGTATTGTGTCACAATGGTACCTATTCAGGTG
TTTTATCATCAGTAATTTTCATAACTATTTGTTATTGCTTAGGAAATCAAGCAGTAAATAATTTTGTCTTTGTCAGGTGTTTTATCACCGTTAATTTCCATACCTATTTGCTATTACTTCAGAAATCAAACAGTTAATCATGTTCATCTTTGTAGTGCTTCATCTGATAAAGACATAAATGCTGTTAATCATCTTCTCCA
TATTGAGAAAACATGAACTATCACAAATTCCTGACTCATCTCTTATGATAATTTGTGTGAATGTTATGATTACATTACCTATTTCAACAGCCG
Intron 5 GTTCAAATCC ... AAGAATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.93 | 96 | 19 | 7 |
| A2 | 17.39 | 76 | 21 | 11 |
| A3 | 15.38 | 110 | 25 | 15 |
| A4 | 10.99 | 81 | 7 | 13 |
| A5 | 13.58 | 35 | 4 | 7 |
| A6 | 9.91 | 300 | 40 | 26 |
| A7 | 12.26 | 383 | 61 | 46 |
| A8 | 14.81 | 322 | 71 | 41 |
| A9 | 13.6 | 251 | 42 | 37 |
| A10 | 13.29 | 248 | 40 | 36 |
>TRINITY_DN41906_c0_g1_i10 from sample A8 / Example spliced isoformAGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGTTCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCTGTCTTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTTATCTTTAGGTTATTGT
GATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTAGCGAGCATGGCATTGGCGATACAGATACGGCCCCTCTTCTGCAACCACCATTAATTGCATTGGTCGAGAAAGTCAATGAAATCGCTGAT
GAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAATTTGTTCACCGGTCATGCCTTGATCACTGGCGTTCTGTGAAGGAAGGTTTTGCATTTTCACATTGCACTACCTGTAAAGCACAATTTCA
TCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAATGATTGCTGTCATGGGTGGTATTGCATATTTGATGGACACAAATGGGCAATTCAGAAATTCATTCAGTGATGGATGGGACCGACTGTTATCAAAGCATC
CGATACCATTTTACTATTGTTTTGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCTCAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCATTTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTT
ATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACTATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCT
ATAGCTATCTTTAAAAATGAATATAGCATGTATACTTCTCAATATGTTCTCTGATGACATTTTTCTTATAATTGACACATCTTCAAATTATATAGCTCTTTGTGCCTGTCAAGCCTGATTTCTCTGATAGGCCTGAGTATGAATTGCTAAATATTTGGAAGTTCATTTCAATAATTACTTTGCTGCTATAACATGATGGT
TCTCCATCCTTCCCGTGTGTATGTAGATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCTAACATGGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTCAGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATT
TCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTTGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCTGAACAATTCACAATAATTAATTACAAATTCCAAATTAAATATGAAAGGGTTTCCCAATTTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTACTAGTAGAAATATTGT
CATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTACAGATATTTGAATACCTGTTAGAATACTTGACTCA
>TRINITY_DN41906_c0_g1_i1 from sample A8 / Example unspliced isoform:AGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGTTCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCTGTCTTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTATTGGACGCTTGACGTG
CAGGAGTGAAAGGTTATCTTTAGGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTAGCGAGCATGGCATTGGCGATACAGATACGGCCCCTCTTCTGCAACCACCATTAATTGC
ATTGGTCGAGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAATTTGTTCACCGGTCATGCCTTGATCACTGGCGTTCTGTGAAGGAAGGTTTTGCATTTT
CACATTGCACTACCTGTAAAGCACAATTTCATCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAATGATTGCTGTCATGGGTGGTATTGCATATTTGATGGACACAAATGGGCAATTCAGAAATTCATTCAGT
GATGGATGGGACCGACTGTTATCAAAGCATCCGATACCATTTTACTATTGTTTTGgttcaaatcccactttgtgatacgtttgctcttcatgagctgattgttcttgagatgttgacctggccttcagccctgaagaatccagGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCT
CAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCATTTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTAT
CACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACTATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTAAAAATGAATATAGCATGTATACTTCTCAATATGTTCTCTGATGACATTTTTCTTATAATTGACACATC
TTCAAATTATATAGCTCTTTGTGCCTGTCAAGCCTGATTTCTCTGATAGGCCTGAGTATGAATTGCTAAATATTTGGAAGTTCATTTCAATAATTACTTTGCTGCTATAACATGATGGTTCTCCATCCTTCCCGTGTGTATGTAGATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCTAACAT
GGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTCAGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTTGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCT
GAACAATTCACAATAATTAATTACAAATTCCAAATTAAATATGAAAGGGTTTCCCAATTTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTACTAGTAGAAATATTGTCATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTACAGATATTTGAATACCTGTTAGAATACTTGACTC
A
Intron 6 GTTACCCTGG ... CTGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.33 | 7 | 2 | 8 |
| A2 | 56 | 11 | 1 | 14 |
| A3 | 51.61 | 15 | 0 | 16 |
| A4 | 53.57 | 13 | 1 | 15 |
| A5 | 53.33 | 7 | 0 | 8 |
| A6 | 55.17 | 26 | 9 | 32 |
| A7 | 50 | 46 | 4 | 46 |
| A8 | 50.6 | 41 | 4 | 42 |
| A9 | 50 | 37 | 4 | 37 |
| A10 | 47.06 | 36 | 0 | 32 |
>TRINITY_DN41906_c0_g1_i1 from sample A8 / Example spliced isoformAGAAAGTGTCAGACTTATTCTTCAAACTTCGAAATAACACGACATGTTCTTGCAGACGCATTCTCGAAAGAGCCGCGTATACTGTCATACCAATTTATCGAGGACCACCTCTGGCATTCATATCTTTACGTCAAAATCCTCTGTCTTGCAATTATTTTCTAAAGACTTTGTATTTTGGGAGGTATTGGACGCTTGACGTG
CAGGAGTGAAAGGTTATCTTTAGGTTATTGTGATCATTTTGAAGGATTAGACCAATTCTACGAGAAATCCGTCAGCCTGATAGTTGTGTCAGCCTCGCGAGTTTGGTGGCAATGAAACCGGAAGGGCAATTGGAGCATGGTAGCGAGCATGGCATTGGCGATACAGATACGGCCCCTCTTCTGCAACCACCATTAATTGC
ATTGGTCGAGAAAGTCAATGAAATCGCTGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGTATCTGTCTTGAGTTAGAGGGCTGTGATCCAGCTGATGAATTGATAGCTCCTTGCTTATGCAAGGGCACACAACAATTTGTTCACCGGTCATGCCTTGATCACTGGCGTTCTGTGAAGGAAGGTTTTGCATTTT
CACATTGCACTACCTGTAAAGCACAATTTCATCTGCGGGCTGAAGTGCCAGAAGATTACTCCTTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTCGTTTTTTTGGCAGTGCAAACAATGATTGCTGTCATGGGTGGTATTGCATATTTGATGGACACAAATGGGCAATTCAGAAATTCATTCAGT
GATGGATGGGACCGACTGTTATCAAAGCATCCGATACCATTTTACTATTGTTTTGGTTCAAATCCCACTTTGTGATACGTTTGCTCTTCATGAGCTGATTGTTCTTGAGATGTTGACCTGGCCTTCAGCCCTGAAGAATCCAGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTGATAGTGCATTGTTCCT
CAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCATTTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTAT
CACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACTATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTAAAAATGAATATAGCATGTATACTTCTCAATATGTTCTCTGATGACATTTTTCTTATAATTGACACATC
TTCAAATTATATAGCTCTTTGTGCCTGTCAAGCCTGATTTCTCTGATAGGCCTGAGTATGAATTGCTAAATATTTGGAAGTTCATTTCAATAATTACTTTGCTGCTATAACATGATGGTTCTCCATCCTTCCCGTGTGTATGTAGATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCTCAACTGTATGTTTCTAACAT
GGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTCAGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTTGGTGCTTTTGTGTACAAGCAGTACTTCATGAACTCT
GAACAATTCACAATAATTAATTACAAATTCCAAATTAAATATGAAAGGGTTTCCCAATTTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTACTAGTAGAAATATTGTCATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTACAGATATTTGAATACCTGTTAGAATACTTGACTC
A
>TRINITY_DN41906_c0_g1_i8 from sample A8 / Example unspliced isoform:CTCAGTTTTGTCTATTGGGTTAACCTTGAGTGGCTGAGAGGAAAAGTTGTTTCCTCCCCCTTTCAGGTTCAAATCCCACTTTGTGATACGTTTGCTCTTCATGAGCTGATTGTTCTTGAGATGTTGACCTGGCCTTCAGCCCTGAAGAATCCAGgttaccctggttttcctgggagatgcattcccaaataaaaaaggaa
aaaaaatcaatctgttgtctcagttttatacataattcctttacttgtatttaattgactaatgtctggtttatttcaaatcatttgacagtggctttgtgaagactgaacatagtaagcacacagtttgaactttgaataacccaaccaattctgcatgcagGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGG
TCTGATAGTGCATTGTTCCTCAGTCAACAACAACGATCCATGCATGGCGGGTTGTCGGAATTGTTGTTATGGATGGGGCATTTTAGACTGTTTCCCAGCATCTATGGAAGCATGTGGAGCACTCCTAGTTATTTTTGTTATTATTTTTGCCATCCTTGGCATTGCCTATGGCCTCCTAGCTGCAACAATGGCAATTCAGA
GAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTTACAAAGGAATATATTGTTGAAGACCTGCATGGACACTATACACCTCCTAAACTAGACCCGGAACATGAAGAACGTTTGAAATCCTTGAAGCTCCTATAGCTATCTTTAAAAATGAATATAGCATGTATACTTCTCAATATGTTCTCTGATGACATT
TTTCTTATAATTGACACATCTTCAAATTATATAGCTCTTTGTGCCTGTCAAGCCTGATTTCTCTGATAGGCCTGAGTATGAATTGCTAAATATTTGGAAGTTCATTTCAATAATTACTTTGCTGCTATAACATGATGGTTCTCCATCCTTCCCGTGTGTATGTAGATAAAGGCAGTCTGCTGGTTTTAATCCAAGCTCCT
CAACTGTATGTTTCTAACATGGGCAACCAAGGCATGTTGCTTCCAGTCCATGGCCACCTTGGATGCTTATGACAATTCAGATATCTATCAGCATGGTAGTATTGTTTCTGTTGAAATAGAATTTTACCAAAATACCATTTCTGCTATACTAGTTACACTTTTCTTGAAGAGCTGTTAAATCGTTGGTGCTTTTGTGTACA
AGCAGTACTTCATGAACTCTGAACAATTCACAATAATTAATTACAAATTCCAAATTAAATATGAAAGGGTTTCCCAATTTCGATGGTTGACCTTTTTGACGAGTCAAATAAGGGTTTTTTTTACTAGTAGAAATATTGTCATTTACTCTGTGTTTTCTCAATGCATTAAGATTTCATGGTTTACTACAGATATTTGAATA
CCTGTTAGAATACTTGACTCA